<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-10-08 04:59:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744769" ref_strand="+" ref_description="SGN-E744769 [GI|13186137]">
      <seq>cttcaaacccttgccttcatttgggttccaacatttatagagttttctttttacttccttctttggttgattaaaaccggaaattgaaggtcgggtggagtttcggtagattccggcaggcgcgtagctgtcacgtacctctttaatttcatgatttcaacaccatttgataacgataaattccaccagacgaacgccggtattaagatttgccggtgtaattcatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgcaggtggtggattcatggggaaaaccccttattctcatacgcaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatggatgattcgccagcagtgacgcaaacggcgtctgatgatgcctactcgttcaatcaacggccgattgaatcaacgaccaacgttgacggcctgaatttcggaggatatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccagatctcaaggcaaatcgaagaaacaatctggaaataaacggcctaccccttccggatccagtaaggatctgaagaagctcccaaacggagttgaaaataggaattttggtaatccaggtggtgtggatggtgtgaaggccatcggaacggaaagtatgatgaaggaatgtaggcagattttggcaaagctgatgaagcacaaaaatgggtggattttcaatatccctgttgatgctgaagccttgggtcttcatgattaccaccaaattattaagcgacccatggatttggggacggttaaatcaaatttggctaagaatttttacccttccccttttgaatttgctgctgatgttaggcttactttcaataatgccttgttgtataaccctaaaacagatcaagttaatgcgttcgctgagcagcttctcggacgatttgaggacatgtttagaccgctccaggataaaatgaataagcttgaaggcggcaggcgggattatcaccctgtagatgagttgcaggggagttcttggaatcacatacctactcccgagagagtgaagaaacccaaacctaccccagtccctaacatttcaaagaagcaagagcggatgcaaaatcattctagtgcgtcaacaccctctttgccagtgccaccacccaatccaccagcccgacagcagtcaccattgtcaactccgtccccagtgagggcaccagctgcgaagcctcaatcagctgctaaagttcctactatgggaaagcaacctaaaccgagggccaaggatccaaataaaagagagatgaatatggaggaaaagcataaattaggagttgggttgcaaagtttgccacaagagaagatgccgcagttggtgcagattataaggaagaggaatgaacatttagcccaagacggtgatgagattgagctcgacattgaggcccttgacaccgagactctatgggagcttgatcggtttgtgaccaattggaagaagatggtgagcaaaaccaagaggcaagccttgatgaacaatttgggaccaccatccgccagtgctgcagcttcagctgcaactacatccgttgccgaagcagatgggcctactactagtgagaaaaacgattccttcaaaaaggccaagaagggtgatgttggtgaagaggatgtagagatagaggatgatgaaccagctacccattttcctcccgtagaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatgataacacatgacactttctacttctttggtttcaagctccatcaacttaaaacatattgtttgtggtacattgtgttgttcggtgaccagccactaattgtgccaacagctttgagaaaaaagaaatgtggcaaatatgttaaaagttgctggcttaaccatgttctaatcgaccctaaaatgattgggaatagtttattttggcctgagagcagaatgaagatttaagaaagcattcaacgtgtttgaagagaatggtgtatgcgaacaattattttcatatatttaaattctcaggtacttgtattatttaatgggtagctgtgcagttacatgattacttaaaacaagtgctggtagaaactttctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5779" stop="2242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5479" g_stop="3729" g_length="1751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1751" r_length="1751" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3624" g_stop="3402" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1752" r_stop="1974" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3316" g_stop="2542" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="1975" r_stop="2749" r_length="775" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2750" polyA_stop="2770"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E744769" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2749</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5479" e_stop="3729"/>
          <exon e_start="3624" e_stop="3402"/>
          <exon e_start="3316" e_stop="2542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTTCTTTGGTTTCAAGCTCCATCAACTTAAAACATATTGTTTGTGGTACATTGTGTTGGTCGGTTGACCAGCCACTAATTGTGCCAACAGCTTTGAGAAAAAAGAAATGTGGCAAATATGTTAAAAGTTGCTGGCTTAACCATGTTCTAATCGACCCTAAAATGATTGGGAATAGTTTATTTTGGCCTGAGAGCAGAATGAAGATTTAAGAAAGCATTCAACGTGTTTGAAGAGAATGGTGTATGCGAACAATTATTTTCATATATTTAAATTCTTAGGTACTTGTATTATTTAATGGGTAGCTGTGCAGTTACAGTATTACTT-AAACAAGTGCTGGTAGAAACTTTCT</genome_strand>
        <mrna_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGCGTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGG........................................................................................................CCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTTCTTTGGTTTCAAGCTCCATCAACTTAAAACATATTGTTTGTGGTACATTGTGTTGTTCGG-TGACCAGCCACTAATTGTGCCAACAGCTTTGAGAAAAAAGAAATGTGGCAAATATGTTAAAAGTTGCTGGCTTAACCATGTTCTAATCGACCCTAAAATGATTGGGAATAGTTTATTTTGGCCTGAGAGCAGAATGAAGATTTAAGAAAGCATTCAACGTGTTTGAAGAGAATGGTGTATGCGAACAATTATTTTCATATATTTAAATTCTCAGGTACTTGTATTATTTAATGGGTAGCTGTGCAGTTACATGATTACTTAAAACAAGTGCTGGTAGAAACTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747235" ref_strand="+" ref_description="SGN-E747235 [GI|10179607]">
      <seq>cttcaaacccttgccttcatttgggttccaacatttatagagttttctttttacttccttctttggttgattaaaaccggaaattgaaggtcgggtggagtttcggtagattccggcaggcgcgtagctgtcacgtacctctttaatttcatgatttcaacaccatttgataacgataaattccaccagacgaacgccggtattaagatttgccggtgtaattcatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgcaggtggtggattcatggggaaaaccccttattctcatacgcaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatggatgattcgccagcagtgacgcaaacggcgtctgatgatgcctactcgttcaatcaacggccgattgaatcaacgaccaacgttgacggcctgaatttcggaggatatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccagatctcaaggcaaatcgaagaaacaatctggaaataaacggcctaccccttccggatccagtaaggatctgaagaagctcccaaacggagttgaaaataggaattttggtaatccaggtggtgtggatggtgtgaaggccatcggaacggaaagtatgatgaaggaatgtaggcagattttggcaaagctgatgaagcacaaaaatgggtggattttcaatatccctgttgatgctgaagccttgggtcttcatgattaccaccaaattattaagcgacccatggatttggggacggttaaatcaaatttggctaagaatttttacccttccccttttgaatttgctgctgatgttaggcttactttcaataatgccttgttgtataaccctaaaacagatcaagttaatgcgttcgctgagcagcttctcggacgatttgaggacatgtttagaccgctccaggataaaatgaataagcttgaaggcggcaggcgggattatcaccctgtagatgagttgcaggggagttcttggaatcacatacctactcccgagagagtgaagaaacccaaacctaccccagtccctaacatttcaaagaagcaagagcggatgcaaaatcattctagtgcgtcaacaccctctttgccagtgccaccacccaatccaccagcccgacagcagtcaccattgtcaactccgtccccagtgagggcaccagctgcgaagcctcaatcagctgctaaagttcctactatgggaaagcaacctaaaccgagggccaaggatccaaataaaagagagatgaatatggaggaaaagcataaattaggagttgggttgcaaagtttgccacaagagaagatgccgcagttggtgcagattataaggaagaggaatgaacatttagcccaagacggtgatgagattgagctcgacattgaggcccttgacaccgagactctatgggagcttgatcggtttgtgaccaattggaagaagatggtgagcaaaaccaagaggcaagccttgatgaacaatttgggaccaccatccgccagtgctgcagcttcagctgcaactacatccgttgccgaagcagatgggcctactactagtgagaaaaacgattccttcaaaaaggccaagaagggtgatgttggtgaagaggatgtagagatagaggatgatgaaccagctacccattttcctcccgtagaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatgataacacatgacactttctacttctttggtttcaagctccatcaacttaaaacatattgtttgtggtacattgtgttgttcggtgaccagccactaattgtgccaacagctttgagaaaaaagaaatgtggcaaatatgttaaaagttgctggcttaaccatgttctaatcgaccctaaaatgattgggaatagtttattttggcctgagagcagaatgaagatttaagaaagcattcaacgtgtttgaagagaatggtgtatgcgaacaattattttcatatatttaaattctcaggtacttgtattatttaatgggtagctgtgcagttacatgattacttaaaacaagtgctggtagaaactttctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5779" stop="2242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5479" g_stop="3729" g_length="1751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1751" r_length="1751" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3624" g_stop="3402" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1752" r_stop="1974" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3316" g_stop="2542" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="1975" r_stop="2749" r_length="775" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2750" polyA_stop="2770"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E747235" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2749</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5479" e_stop="3729"/>
          <exon e_start="3624" e_stop="3402"/>
          <exon e_start="3316" e_stop="2542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTTCTTTGGTTTCAAGCTCCATCAACTTAAAACATATTGTTTGTGGTACATTGTGTTGGTCGGTTGACCAGCCACTAATTGTGCCAACAGCTTTGAGAAAAAAGAAATGTGGCAAATATGTTAAAAGTTGCTGGCTTAACCATGTTCTAATCGACCCTAAAATGATTGGGAATAGTTTATTTTGGCCTGAGAGCAGAATGAAGATTTAAGAAAGCATTCAACGTGTTTGAAGAGAATGGTGTATGCGAACAATTATTTTCATATATTTAAATTCTTAGGTACTTGTATTATTTAATGGGTAGCTGTGCAGTTACAGTATTACTT-AAACAAGTGCTGGTAGAAACTTTCT</genome_strand>
        <mrna_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGCGTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGG........................................................................................................CCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTTCTTTGGTTTCAAGCTCCATCAACTTAAAACATATTGTTTGTGGTACATTGTGTTGTTCGG-TGACCAGCCACTAATTGTGCCAACAGCTTTGAGAAAAAAGAAATGTGGCAAATATGTTAAAAGTTGCTGGCTTAACCATGTTCTAATCGACCCTAAAATGATTGGGAATAGTTTATTTTGGCCTGAGAGCAGAATGAAGATTTAAGAAAGCATTCAACGTGTTTGAAGAGAATGGTGTATGCGAACAATTATTTTCATATATTTAAATTCTCAGGTACTTGTATTATTTAATGGGTAGCTGTGCAGTTACATGATTACTTAAAACAAGTGCTGGTAGAAACTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744770" ref_strand="+" ref_description="SGN-E744770 [GI|13186135]">
      <seq>cttcaaacccttgccttcatttgggttccaacatttatagagttttctttttacttccttctttggttgattaaaaccggaaattgaaggtcgggtggagtttcggtagattccggcaggcgcgtagctgtcacgtacctctttaatttcatgatttcaacaccatttgataacgataaattccaccagacgaacgccggtattaagatttgccggtgtaattcatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgcaggtggtggattcatggggaaaaccccttattctcatacgcaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatggatgattcgccagcagtgacgcaaacggcgtctgatgatgcctactcgttcaatcaacggccgattgaatcaacgaccaacgttgacggcctgaatttcggaggatatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccagatctcaaggcaaatcgaagaaacaatctggaaataaacggcctaccccttccggatccagtaaggatctgaagaagctcccaaacggagttgaaaataggaattttggtaatccaggtggtgtggatggtgtgaaggccatcggaacggaaagtatgatgaaggaatgtaggcagattttggcaaagctgatgaagcacaaaaatgggtggattttcaatatccctgttgatgctgaagccttgggtcttcatgattaccaccaaattattaagcgacccatggatttggggacggttaaatcaaatttggctaagaatttttacccttccccttttgaatttgctgctgatgttaggcttactttcaataatgccttgttgtataaccctaaaacagatcaagttaatgcgttcgctgagcagcttctcggacgatttgaggacatgtttagaccgctccaggataaaatgaataagcttgaaggcggcaggcgggattatcaccctgtagatgagttgcaggggagttcttggaatcacatacctactcccgagagagtgaagaaacccaaacctaccccagtccctaacatttcaaagaagcaagagcggatgcaaaatcattctagtgcgtcaacaccctctttgccagtgccaccacccaatccaccagcccgacagcagtcaccattgtcaactccgtccccagtgagggcaccagctgcgaagcctcaatcagctgctaaagttcctactatgggaaagcaacctaaaccgagggccaaggatccaaataaaagagagatgaatatggaggaaaagcataaattaggagttgggttgcaaagtttgccacaagagaagatgccgcagttggtgcagattataaggaagaggaatgaacatttagcccaagacggtgatgagattgagctcgacattgaggcccttgacaccgagactctatgggagcttgatcggtttgtgaccaattggaagaagatggtgagcaaaaccaagaggcaagccttgatgaacaatttgggaccaccatccgccagtgctgcagcttcagctgcaactacatccgttgccgaagcagatgggcctactactagtgagaaaaacgattccttcaaaaaggccaagaagggtgatgttggtgaagaggatgtagagatagaggatgatgaaccagctacccattttcctcccgtagaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatgataacacatgacactttctacttctttggtttcaagctccatcaacttaaaacatattgtttgtggtacattgtgttgttcggtgaccagccactaattgtgccaacagctttgagaaaaaagaaatgtggcaaatatgttaaaagttgctggcttaaccatgttctaatcgaccctaaaatgattgggaatagtttattttggcctgagagcagaatgaagatttaagaaagcattcaacgtgtttgaagagaatggtgtatgcgaacaattattttcatatatttaaattctcaggtacttgtattatttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5779" stop="2296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5479" g_stop="3729" g_length="1751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1751" r_length="1751" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3624" g_stop="3402" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1752" r_stop="1974" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3316" g_stop="2597" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1975" r_stop="2693" r_length="719" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2694" polyA_stop="2713"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E744770" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2694</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5479" e_stop="3729"/>
          <exon e_start="3624" e_stop="3402"/>
          <exon e_start="3316" e_stop="2597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTTCTTTGGTTTCAAGCTCCATCAACTTAAAACATATTGTTTGTGGTACATTGTGTTGGTCGGTTGACCAGCCACTAATTGTGCCAACAGCTTTGAGAAAAAAGAAATGTGGCAAATATGTTAAAAGTTGCTGGCTTAACCATGTTCTAATCGACCCTAAAATGATTGGGAATAGTTTATTTTGGCCTGAGAGCAGAATGAAGATTTAAGAAAGCATTCAACGTGTTTGAAGAGAATGGTGTATGCGAACAATTATTTTCATATATTTAAATTCTTAGGTACTTGTATTATTTA</genome_strand>
        <mrna_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGCGTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGG........................................................................................................CCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTTCTTTGGTTTCAAGCTCCATCAACTTAAAACATATTGTTTGTGGTACATTGTGTTGTTCGG-TGACCAGCCACTAATTGTGCCAACAGCTTTGAGAAAAAAGAAATGTGGCAAATATGTTAAAAGTTGCTGGCTTAACCATGTTCTAATCGACCCTAAAATGATTGGGAATAGTTTATTTTGGCCTGAGAGCAGAATGAAGATTTAAGAAAGCATTCAACGTGTTTGAAGAGAATGGTGTATGCGAACAATTATTTTCATATATTTAAATTCTCAGGTACTTGTATTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747236" ref_strand="+" ref_description="SGN-E747236 [GI|10179605]">
      <seq>cttcaaacccttgccttcatttgggttccaacatttatagagttttctttttacttccttctttggttgattaaaaccggaaattgaaggtcgggtggagtttcggtagattccggcaggcgcgtagctgtcacgtacctctttaatttcatgatttcaacaccatttgataacgataaattccaccagacgaacgccggtattaagatttgccggtgtaattcatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgcaggtggtggattcatggggaaaaccccttattctcatacgcaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatggatgattcgccagcagtgacgcaaacggcgtctgatgatgcctactcgttcaatcaacggccgattgaatcaacgaccaacgttgacggcctgaatttcggaggatatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccagatctcaaggcaaatcgaagaaacaatctggaaataaacggcctaccccttccggatccagtaaggatctgaagaagctcccaaacggagttgaaaataggaattttggtaatccaggtggtgtggatggtgtgaaggccatcggaacggaaagtatgatgaaggaatgtaggcagattttggcaaagctgatgaagcacaaaaatgggtggattttcaatatccctgttgatgctgaagccttgggtcttcatgattaccaccaaattattaagcgacccatggatttggggacggttaaatcaaatttggctaagaatttttacccttccccttttgaatttgctgctgatgttaggcttactttcaataatgccttgttgtataaccctaaaacagatcaagttaatgcgttcgctgagcagcttctcggacgatttgaggacatgtttagaccgctccaggataaaatgaataagcttgaaggcggcaggcgggattatcaccctgtagatgagttgcaggggagttcttggaatcacatacctactcccgagagagtgaagaaacccaaacctaccccagtccctaacatttcaaagaagcaagagcggatgcaaaatcattctagtgcgtcaacaccctctttgccagtgccaccacccaatccaccagcccgacagcagtcaccattgtcaactccgtccccagtgagggcaccagctgcgaagcctcaatcagctgctaaagttcctactatgggaaagcaacctaaaccgagggccaaggatccaaataaaagagagatgaatatggaggaaaagcataaattaggagttgggttgcaaagtttgccacaagagaagatgccgcagttggtgcagattataaggaagaggaatgaacatttagcccaagacggtgatgagattgagctcgacattgaggcccttgacaccgagactctatgggagcttgatcggtttgtgaccaattggaagaagatggtgagcaaaaccaagaggcaagccttgatgaacaatttgggaccaccatccgccagtgctgcagcttcagctgcaactacatccgttgccgaagcagatgggcctactactagtgagaaaaacgattccttcaaaaaggccaagaagggtgatgttggtgaagaggatgtagagatagaggatgatgaaccagctacccattttcctcccgtagaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatgataacacatgacactttctacttctttggtttcaagctccatcaacttaaaacatattgtttgtggtacattgtgttgttcggtgaccagccactaattgtgccaacagctttgagaaaaaagaaatgtggcaaatatgttaaaagttgctggcttaaccatgttctaatcgaccctaaaatgattgggaatagtttattttggcctgagagcagaatgaagatttaagaaagcattcaacgtgtttgaagagaatggtgtatgcgaacaattattttcatatatttaaattctcaggtacttgtattatttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5779" stop="2296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5479" g_stop="3729" g_length="1751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1751" r_length="1751" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3624" g_stop="3402" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1752" r_stop="1974" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3316" g_stop="2597" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1975" r_stop="2693" r_length="719" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2694" polyA_stop="2713"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E747236" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2694</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5479" e_stop="3729"/>
          <exon e_start="3624" e_stop="3402"/>
          <exon e_start="3316" e_stop="2597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTTCTTTGGTTTCAAGCTCCATCAACTTAAAACATATTGTTTGTGGTACATTGTGTTGGTCGGTTGACCAGCCACTAATTGTGCCAACAGCTTTGAGAAAAAAGAAATGTGGCAAATATGTTAAAAGTTGCTGGCTTAACCATGTTCTAATCGACCCTAAAATGATTGGGAATAGTTTATTTTGGCCTGAGAGCAGAATGAAGATTTAAGAAAGCATTCAACGTGTTTGAAGAGAATGGTGTATGCGAACAATTATTTTCATATATTTAAATTCTTAGGTACTTGTATTATTTA</genome_strand>
        <mrna_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGCGTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGG........................................................................................................CCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTTCTTTGGTTTCAAGCTCCATCAACTTAAAACATATTGTTTGTGGTACATTGTGTTGTTCGG-TGACCAGCCACTAATTGTGCCAACAGCTTTGAGAAAAAAGAAATGTGGCAAATATGTTAAAAGTTGCTGGCTTAACCATGTTCTAATCGACCCTAAAATGATTGGGAATAGTTTATTTTGGCCTGAGAGCAGAATGAAGATTTAAGAAAGCATTCAACGTGTTTGAAGAGAATGGTGTATGCGAACAATTATTTTCATATATTTAAATTCTCAGGTACTTGTATTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540229" ref_strand="+" ref_description="SGN-E540229 [TUS-60-G10](-)">
      <seq>tgtgaagaggatgtagagatagaggatgatgaaccagctacccattttcctcccgtagaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatgataacacatgacactttctacttctttggtttcaagctccatcaacttaaaacatattgtttgtggtacattgtgttggtcggttgaccagccactaattgtgccaacagctttgagaaaaaagaaatgtggcaaatatgttaaaagttgctggcttaaccatgttctaatcgaccctaaaatgattgggaatagtttattttggcctgagagcagaatgaagatttaagaaagcattcaacgtgttgaagagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="3869" stop="2355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3570" g_stop="3402" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3316" g_stop="2653" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="832" r_length="663" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E540229" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3570" e_stop="3402"/>
          <exon e_start="3316" e_stop="2653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTTCTTTGGTTTCAAGCTCCATCAACTTAAAACATATTGTTTGTGGTACATTGTGTTGGTCGGTTGACCAGCCACTAATTGTGCCAACAGCTTTGAGAAAAAAGAAATGTGGCAAATATGTTAAAAGTTGCTGGCTTAACCATGTTCTAATCGACCCTAAAATGATTGGGAATAGTTTATTTTGGCCTGAGAGCAGAATGAAGATTTAAGAAAGCATTCAACGTGTTTGAAGAGAATG</genome_strand>
        <mrna_strand>TGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTTCTTTGGTTTCAAGCTCCATCAACTTAAAACATATTGTTTGTGGTACATTGTGTTGGTCGGTTGACCAGCCACTAATTGTGCCAACAGCTTTGAGAAAAAAGAAATGTGGCAAATATGTTAAAAGTTGCTGGCTTAACCATGTTCTAATCGACCCTAAAATGATTGGGAATAGTTTATTTTGGCCTGAGAGCAGAATGAAGATTTAAGAAAGCATTCAACGTG-TTGAAGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744771" ref_strand="+" ref_description="SGN-E744771 [GI|13186133]">
      <seq>cttcaaacccttgccttcatttgggttccaacatttatagagttttctttttacttccttctttggttgattaaaaccggaaattgaaggtcgggtggagtttcggtagattccggcaggcgcgtagctgtcacgtacctctttaatttcatgatttcaacaccatttgataacgataaattccaccagacgaacgccggtattaagatttgccggtgtaattcatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgcaggtggtggattcatggggaaaaccccttattctcatacgcaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatggatgattcgccagcagtgacgcaaacggcgtctgatgatgcctactcgttcaatcaacggccgattgaatcaacgaccaacgttgacggcctgaatttcggaggatatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccagatctcaaggcaaatcgaagaaacaatctggaaataaacggcctaccccttccggatccagtaaggatctgaagaagctcccaaacggagttgaaaataggaattttggtaatccaggtggtgtggatggtgtgaaggccatcggaacggaaagtatgatgaaggaatgtaggcagattttggcaaagctgatgaagcacaaaaatgggtggattttcaatatccctgttgatgctgaagccttgggtcttcatgattaccaccaaattattaagcgacccatggatttggggacggttaaatcaaatttggctaagaatttttacccttccccttttgaatttgctgctgatgttaggcttactttcaataatgccttgttgtataaccctaaaacagatcaagttaatgcgttcgctgagcagcttctcggacgatttgaggacatgtttagaccgctccaggataaaatgaataagcttgaaggcggcaggcgggattatcaccctgtagatgagttgcaggggagttcttggaatcacatacctactcccgagagagtgaagaaacccaaacctaccccagtccctaacatttcaaagaagcaagagcggatgcaaaatcattctagtgcgtcaacaccctctttgccagtgccaccacccaatccaccagcccgacagcagtcaccattgtcaactccgtccccagtgagggcaccagctgcgaagcctcaatcagctgctaaagttcctactatgggaaagcaacctaaaccgagggccaaggatccaaataaaagagagatgaatatggaggaaaagcataaattaggagttgggttgcaaagtttgccacaagagaagatgccgcagttggtgcagattataaggaagaggaatgaacatttagcccaagacggtgatgagattgagctcgacattgaggcccttgacaccgagactctatgggagcttgatcggtttgtgaccaattggaagaagatggtgagcaaaaccaagaggcaagccttgatgaacaatttgggaccaccatccgccagtgctgcagcttcagctgcaactacatccgttgccgaagcagatgggcctactactagtgagaaaaacgattccttcaaaaaggccaagaagggtgatgttggtgaagaggatgtagagatagaggatgatgaaccagctacccattttcctcccgtagaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatgataacacatgacactttctacttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5779" stop="2588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5479" g_stop="3729" g_length="1751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1751" r_length="1751" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3624" g_stop="3402" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1752" r_stop="1974" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3316" g_stop="2888" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1975" r_stop="2403" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2404" polyA_stop="2424"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E744771" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2403</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5479" e_stop="3729"/>
          <exon e_start="3624" e_stop="3402"/>
          <exon e_start="3316" e_stop="2888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTT</genome_strand>
        <mrna_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGCGTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGG........................................................................................................CCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747237" ref_strand="+" ref_description="SGN-E747237 [GI|10179603]">
      <seq>cttcaaacccttgccttcatttgggttccaacatttatagagttttctttttacttccttctttggttgattaaaaccggaaattgaaggtcgggtggagtttcggtagattccggcaggcgcgtagctgtcacgtacctctttaatttcatgatttcaacaccatttgataacgataaattccaccagacgaacgccggtattaagatttgccggtgtaattcatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgcaggtggtggattcatggggaaaaccccttattctcatacgcaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatggatgattcgccagcagtgacgcaaacggcgtctgatgatgcctactcgttcaatcaacggccgattgaatcaacgaccaacgttgacggcctgaatttcggaggatatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccagatctcaaggcaaatcgaagaaacaatctggaaataaacggcctaccccttccggatccagtaaggatctgaagaagctcccaaacggagttgaaaataggaattttggtaatccaggtggtgtggatggtgtgaaggccatcggaacggaaagtatgatgaaggaatgtaggcagattttggcaaagctgatgaagcacaaaaatgggtggattttcaatatccctgttgatgctgaagccttgggtcttcatgattaccaccaaattattaagcgacccatggatttggggacggttaaatcaaatttggctaagaatttttacccttccccttttgaatttgctgctgatgttaggcttactttcaataatgccttgttgtataaccctaaaacagatcaagttaatgcgttcgctgagcagcttctcggacgatttgaggacatgtttagaccgctccaggataaaatgaataagcttgaaggcggcaggcgggattatcaccctgtagatgagttgcaggggagttcttggaatcacatacctactcccgagagagtgaagaaacccaaacctaccccagtccctaacatttcaaagaagcaagagcggatgcaaaatcattctagtgcgtcaacaccctctttgccagtgccaccacccaatccaccagcccgacagcagtcaccattgtcaactccgtccccagtgagggcaccagctgcgaagcctcaatcagctgctaaagttcctactatgggaaagcaacctaaaccgagggccaaggatccaaataaaagagagatgaatatggaggaaaagcataaattaggagttgggttgcaaagtttgccacaagagaagatgccgcagttggtgcagattataaggaagaggaatgaacatttagcccaagacggtgatgagattgagctcgacattgaggcccttgacaccgagactctatgggagcttgatcggtttgtgaccaattggaagaagatggtgagcaaaaccaagaggcaagccttgatgaacaatttgggaccaccatccgccagtgctgcagcttcagctgcaactacatccgttgccgaagcagatgggcctactactagtgagaaaaacgattccttcaaaaaggccaagaagggtgatgttggtgaagaggatgtagagatagaggatgatgaaccagctacccattttcctcccgtagaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatgataacacatgacactttctacttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5779" stop="2588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5479" g_stop="3729" g_length="1751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1751" r_length="1751" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3624" g_stop="3402" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1752" r_stop="1974" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3316" g_stop="2888" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1975" r_stop="2403" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2404" polyA_stop="2424"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E747237" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2403</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5479" e_stop="3729"/>
          <exon e_start="3624" e_stop="3402"/>
          <exon e_start="3316" e_stop="2888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTT</genome_strand>
        <mrna_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGCGTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGG........................................................................................................CCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744701" ref_strand="+" ref_description="SGN-E744701 [GI|19171208]">
      <seq>gtttagaccgctccaggataaaatgaataagcttgaaggcggcaggcgggattatcaccctgtagatgagttgcaggggagttcttggaatcacatacctactcccgagagagtgaagaaacccaaacctaccccagtccctaacatttcaaagaagcaagagcggatgcaaaatcattctagtgcgtcaacaccctctttgccagtgccaccacccaatccaccagcccgacagcagtcaccattgtcaactccgtccccagtgagggcaccagctgcgaagcctcaatcagctgctaaagttcctactatgggaaagcaacctaaaccgagggccaaggatccaaataaaagagagatgaatatggaggaaaagcataaattaggagttgggttgcaaagtttgccacaagagaagatgccgcagttggtgcagattataaggaagaggaatgaacatttagcccaagacggtgatgagattgagctcgacattgaggcccttgacaccgagactctatgggagcttgatcggtttgtgaccaattggaagaagatggtgagcaaaaccaagaggcaagccttgatgaacaatttgggaccaccatccgccagtgctgcagcttcagctgcaactacatccgttgccgaagcagatgggcctactactagtgagaaaaacgattccttcaaaaaggccaagaagggtgatgttggtgaagaggatgtagagatagaggatgatgaaccagctacccattttcctcccgtagaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatgataacacatgacactttctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="4689" stop="2588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4389" g_stop="3729" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3624" g_stop="3402" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="884" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3316" g_stop="2888" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="885" r_stop="1313" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E744701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4389" e_stop="3729"/>
          <exon e_start="3624" e_stop="3402"/>
          <exon e_start="3316" e_stop="2888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTT</genome_strand>
        <mrna_strand>GTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGG........................................................................................................CCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217047" ref_strand="+" ref_description="SGN-E217047 [cLEL-1-O5](-)">
      <seq>tcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatgataacacatgacactttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="3617" stop="2594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3411" g_stop="3402" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3316" g_stop="2894" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="433" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="453"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E217047" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3411" e_stop="3402"/>
          <exon e_start="3316" e_stop="2894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTT</genome_strand>
        <mrna_strand>TCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238967" ref_strand="+" ref_description="SGN-E238967 [cLEL-9-I15](-)">
      <seq>ctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="3613" stop="2598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3313" g_stop="2894" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E238967" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3313" e_stop="2894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTT</genome_strand>
        <mrna_strand>CTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238749" ref_strand="+" ref_description="SGN-E238749 [cLEL-9-I15](-)">
      <seq>tgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactncttagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctggtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="3612" stop="2598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3312" g_stop="2894" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E238749" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3312" e_stop="2894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCT-GTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTT</genome_strand>
        <mrna_strand>TGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTNCTTAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745156" ref_strand="+" ref_description="SGN-E745156 [GI|47105972]">
      <seq>ggctcaatcccttcaaacccttgccttcatttgggttccaacatttatagagttttctttttacttccttctttggttgattaaaaccggaaattgaaggtcgggtggagtttcggtagattccggcaggcgcgtagctgtcacgtacctctttaatttcatgatttcaacaccacttgataacgataaattccaccagacgaacgccggtattaagatttgccggtgtaattcatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgcaggtggtggattcatggggaaaaccccttattctcatacgcaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatggatgattcgccagcagtgacgcaaacggcgtctgatgatgcctactcgttcaatcaacggccgattgaatcaacgaccaacgttgacggcctgaatttcggaggatatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccagatctcaaggcaaatcgaagaaacaatctggaaataaacggcctaccccttccggatccagtaaggatctgaagaagctcccaaacggagttgaaaataggaattttggtaatccaggtggtgtggatggtgtgaaggccatcggaacggaaagtatgatgaaggaatgtaggcagattttggcaaagctgatgaagcacaaaaatgggtggattttcaatatccctgttgatgctgaagccttgggtcttcatgattaccaccaaattattaagcgacccatggatttggggacggttaaatcaaatttggctaagaatttttacccttccccttttgaatttgctgctgatgttaggcttactttcaataatgccttgttgtataaccctaaaacagatcaagttaatggcttcgctgagcagcttctcggacgatttgaggacatgtttagaccgctccaggataaaatgaataagcttgaaggcggcaggcgggattatcaccctgtagatgagttgcaggggagttcttggaatcacatacctactcccgagagagtgaagaaacccaaacctaccccagtccctaacatttcaaagaagcaagagcggatgcaaaatcattctagtgcgtcaacaccctctttgccagtgccaccacccaatccaccagcccgacagcagtcaccattgtcaactccgtccccagtgagggcaccagctgcgaagcctcaatcagctgctaaagttcctactatgggaaagcaacctaaaccgagggccaaggatccaaataaaagagagatgaatatggaggaaaagcataaattaggagttgggttgcaaagtttgccacaagagaagatgccgcagttggtgcagattataaggaagaggaatgaacatttagcccaagacggtgatgagattgagctcgacattgaggcccttgacaccgagactctatgggagcttgatcggtttgtgaccaattggaagaatggtgagcaaaaccaagaggcaagccttgatgaacaatttgggaccaccatccgccagtgctgcagcttcagctgcaactacatccgttgccgaagcagatggggtaatgctatattgcatttatcttgaatctatttgatgagcacattctgtgctcctgtgcttttctctgattggaagttctaacaaatgcgttttcttttgcagcctactactagtgagaaaaacgattccttcaaaaaggccaagaagggtgatgttggtgaagaggatgtagagatagaggatgatgaaccagctacccattttcctcccgtagaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctagtggtatatgttctacttcaaatgcaaaaaaatgatattttttgcgactcaattagagcagattaattgaacatagtttcttatgcagattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5788" stop="2598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5489" g_stop="2896" g_length="2594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2592" r_length="2592" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E745156" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2594</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5489" e_stop="2896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCAATCCCTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACT</genome_strand>
        <mrna_strand>GGCTCAATCCCTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCACTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAG-A-ATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744772" ref_strand="+" ref_description="SGN-E744772 [GI|13186131]">
      <seq>cttcaaacccttgccttcatttgggttccaacatttatagagttttctttttacttccttctttggttgattaaaaccggaaattgaaggtcgggtggagtttcggtagattccggcaggcgcgtagctgtcacgtacctctttaatttcatgatttcaacaccatttgataacgataaattccaccagacgaacgccggtattaagatttgccggtgtaattcatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgcaggtggtggattcatggggaaaaccccttattctcatacgcaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatggatgattcgccagcagtgacgcaaacggcgtctgatgatgcctactcgttcaatcaacggccgattgaatcaacgaccaacgttgacggcctgaatttcggaggatatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccagatctcaaggcaaatcgaagaaacaatctggaaataaacggcctaccccttccggatccagtaaggatctgaagaagctcccaaacggagttgaaaataggaattttggtaatccaggtggtgtggatggtgtgaaggccatcggaacggaaagtatgatgaaggaatgtaggcagattttggcaaagctgatgaagcacaaaaatgggtggattttcaatatccctgttgatgctgaagccttgggtcttcatgattaccaccaaattattaagcgacccatggatttggggacggttaaatcaaatttggctaagaatttttacccttccccttttgaatttgctgctgatgttaggcttactttcaataatgccttgttgtataaccctaaaacagatcaagttaatgcgttcgctgagcagcttctcggacgatttgaggacatgtttagaccgctccaggataaaatgaataagcttgaaggcggcaggcgggattatcaccctgtagatgagttgcaggggagttcttggaatcacatacctactcccgagagagtgaagaaacccaaacctaccccagtccctaacatttcaaagaagcaagagcggatgcaaaatcattctagtgcgtcaacaccctctttgccagtgccaccacccaatccaccagcccgacagcagtcaccattgtcaactccgtccccagtgagggcaccagctgcgaagcctcaatcagctgctaaagttcctactatgggaaagcaacctaaaccgagggccaaggatccaaataaaagagagatgaatatggaggaaaagcataaattaggagttgggttgcaaagtttgccacaagagaagatgccgcagttggtgcagattataaggaagaggaatgaacatttagcccaagacggtgatgagattgagctcgacattgaggcccttgacaccgagactctatgggagcttgatcggtttgtgaccaattggaagaagatggtgagcaaaaccaagaggcaagccttgatgaacaatttgggaccaccatccgccagtgctgcagcttcagctgcaactacatccgttgccgaagcagatgggcctactactagtgagaaaaacgattccttcaaaaaggccaagaagggtgatgttggtgaagaggatgtagagatagaggatgatgaaccagctacccattttcctcccgtagaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5779" stop="2598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5479" g_stop="3729" g_length="1751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1751" r_length="1751" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3624" g_stop="3402" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1752" r_stop="1974" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3316" g_stop="2896" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1975" r_stop="2395" r_length="421" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E744772" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5479" e_stop="3729"/>
          <exon e_start="3624" e_stop="3402"/>
          <exon e_start="3316" e_stop="2896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACT</genome_strand>
        <mrna_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGCGTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGG........................................................................................................CCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747238" ref_strand="+" ref_description="SGN-E747238 [GI|10179601]">
      <seq>cttcaaacccttgccttcatttgggttccaacatttatagagttttctttttacttccttctttggttgattaaaaccggaaattgaaggtcgggtggagtttcggtagattccggcaggcgcgtagctgtcacgtacctctttaatttcatgatttcaacaccatttgataacgataaattccaccagacgaacgccggtattaagatttgccggtgtaattcatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgcaggtggtggattcatggggaaaaccccttattctcatacgcaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatggatgattcgccagcagtgacgcaaacggcgtctgatgatgcctactcgttcaatcaacggccgattgaatcaacgaccaacgttgacggcctgaatttcggaggatatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccagatctcaaggcaaatcgaagaaacaatctggaaataaacggcctaccccttccggatccagtaaggatctgaagaagctcccaaacggagttgaaaataggaattttggtaatccaggtggtgtggatggtgtgaaggccatcggaacggaaagtatgatgaaggaatgtaggcagattttggcaaagctgatgaagcacaaaaatgggtggattttcaatatccctgttgatgctgaagccttgggtcttcatgattaccaccaaattattaagcgacccatggatttggggacggttaaatcaaatttggctaagaatttttacccttccccttttgaatttgctgctgatgttaggcttactttcaataatgccttgttgtataaccctaaaacagatcaagttaatgcgttcgctgagcagcttctcggacgatttgaggacatgtttagaccgctccaggataaaatgaataagcttgaaggcggcaggcgggattatcaccctgtagatgagttgcaggggagttcttggaatcacatacctactcccgagagagtgaagaaacccaaacctaccccagtccctaacatttcaaagaagcaagagcggatgcaaaatcattctagtgcgtcaacaccctctttgccagtgccaccacccaatccaccagcccgacagcagtcaccattgtcaactccgtccccagtgagggcaccagctgcgaagcctcaatcagctgctaaagttcctactatgggaaagcaacctaaaccgagggccaaggatccaaataaaagagagatgaatatggaggaaaagcataaattaggagttgggttgcaaagtttgccacaagagaagatgccgcagttggtgcagattataaggaagaggaatgaacatttagcccaagacggtgatgagattgagctcgacattgaggcccttgacaccgagactctatgggagcttgatcggtttgtgaccaattggaagaagatggtgagcaaaaccaagaggcaagccttgatgaacaatttgggaccaccatccgccagtgctgcagcttcagctgcaactacatccgttgccgaagcagatgggcctactactagtgagaaaaacgattccttcaaaaaggccaagaagggtgatgttggtgaagaggatgtagagatagaggatgatgaaccagctacccattttcctcccgtagaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5779" stop="2598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5479" g_stop="3729" g_length="1751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1751" r_length="1751" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3624" g_stop="3402" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1752" r_stop="1974" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3316" g_stop="2896" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1975" r_stop="2395" r_length="421" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E747238" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5479" e_stop="3729"/>
          <exon e_start="3624" e_stop="3402"/>
          <exon e_start="3316" e_stop="2896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACT</genome_strand>
        <mrna_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGCGTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGG........................................................................................................CCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226488" ref_strand="+" ref_description="SGN-E226488 [cLEL-26-D22](-)">
      <seq>gatgatgcacactcttgagatttgttgattcaagcagtgcataggcggtgctgaaattttcttttatcgaggtataaagttggggactcgaattttgataagttggggaaaaccagcggtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttggagatgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="3575" stop="2598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3275" g_stop="2897" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E226488" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3275" e_stop="2897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTG-AATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACAC</genome_strand>
        <mrna_strand>GATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGC-GGTGCTGAAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTTTGATAAGTTGGGGAAAACCAGCGGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGGAGATGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320995" ref_strand="+" ref_description="SGN-E320995 [cTOB-13-D23]">
      <seq>tccttcaaaaaggccaagaagggtgatgttggtgaagaggatgtagagatagaggatgatgaaccagctacccattttcctcccgtagaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatgataacacatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="3900" stop="2598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3600" g_stop="3402" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3316" g_stop="2898" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="618" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E320995" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3600" e_stop="3402"/>
          <exon e_start="3316" e_stop="2898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACA</genome_strand>
        <mrna_strand>TCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309655" ref_strand="+" ref_description="SGN-E309655 [cLEY-26-J22]">
      <seq>cggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="3594" stop="2605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3294" g_stop="2904" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E309655" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3294" e_stop="2904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACAC</genome_strand>
        <mrna_strand>CGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345753" ref_strand="+" ref_description="SGN-E345753 [cTOF-18-P18]">
      <seq>ggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgantttttcttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="3605" stop="2607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3305" g_stop="2906" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E345753" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3305" e_stop="2906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGA-TTTTTCTTGAAGATGATAAC</genome_strand>
        <mrna_strand>GGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGANTTTTTCTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734388" ref_strand="+" ref_description="SGN-E734388 [LB12CB08]">
      <seq>gagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatgataaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="3807" stop="2598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3507" g_stop="3402" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3316" g_stop="2907" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="516" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="517" polyA_stop="538"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E734388" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3507" e_stop="3402"/>
          <exon e_start="3316" e_stop="2907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAA</genome_strand>
        <mrna_strand>GAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215660" ref_strand="+" ref_description="SGN-E215660 [cLEL-15-M24](-)">
      <seq>tggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctatgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatgataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="3772" stop="2598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3472" g_stop="3402" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3316" g_stop="2907" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="480" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="481" polyA_stop="495"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E215660" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3472" e_stop="3402"/>
          <exon e_start="3316" e_stop="2907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAA</genome_strand>
        <mrna_strand>TGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTA-TG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226667" ref_strand="+" ref_description="SGN-E226667 [cLEL-26-D12](-)">
      <seq>ggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaagatgataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="3471" stop="2598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3171" g_stop="2907" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="266" polyA_stop="280"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E226667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3171" e_stop="2907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAA</genome_strand>
        <mrna_strand>GGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234703" ref_strand="+" ref_description="SGN-E234703 [cLEL-6-D22](-)">
      <seq>tggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="3772" stop="2615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3472" g_stop="3402" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3316" g_stop="2915" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="473" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E234703" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3472" e_stop="3402"/>
          <exon e_start="3316" e_stop="2915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAA</genome_strand>
        <mrna_strand>TGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234991" ref_strand="+" ref_description="SGN-E234991 [cLEL-6-D22](-)">
      <seq>gcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatatgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagttggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatgacataggcaaaatcaaaaagctcagggaactttgtagtgttgatggcagagaagttatggcgttagggatcacaattttaggaattttagagatggtccctctgttaatgagagtgagatatgtagatagatagttgaggagaagacaccttttgtacagttggtttacactaaatatttgatttttcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="3725" stop="2615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3425" g_stop="3402" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3316" g_stop="2915" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="426" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E234991" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3425" e_stop="3402"/>
          <exon e_start="3316" e_stop="2915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAA</genome_strand>
        <mrna_strand>GCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATATGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701342" ref_strand="+" ref_description="SGN-E701342 [FA15CG11]">
      <seq>ccctctttgccagtgccaccacccaatccaccagcccgacagcagtcaccattgtcaactccgtccccagtgagggcaccagctgcgaagcctcaatcagctgctaaagttcctactatgggaaagcaacctaaaccgagggccaaggatccaaataaaagagagatgaatatggaggaaaagcataaattaggagttgggttgcaaagtttgccacaagagaagatgccgcagttggtgcagattataaggaagaggaatgaacatttagcccaagacggtgatgagattgagctcgacattgaggcccttgacaccgagactctatgggagcttgatcggtttgtgaccaattggaagaagatggtgagcaaaaccaagaggcaagccttgatgaacaatttgggaccaccatccgccagtgctgcagcttcagctgcaactacatccgttgccgaagcagatgggcctactactagtgagaaaaacgattccttcaaaaaggccaagaagggtgatgttggtgaagaggatgtagagatagaggatgatgaaccagctacccattttcctcccgtagaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtggtagtagtagctctagtagttctagtagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcataggctgttgctgaattttcttttatcgaggtataaagttggggactcgaattctgataagtggggaaaaccagctgtttgtaaacacatgggcaacctaggaagaaaaattgatctgcttatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="4496" stop="2807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4196" g_stop="3729" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3624" g_stop="3402" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="691" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3316" g_stop="3107" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="900" r_length="209" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E701342" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4196" e_stop="3729"/>
          <exon e_start="3624" e_stop="3402"/>
          <exon e_start="3316" e_stop="3107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGA</genome_strand>
        <mrna_strand>CCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGG........................................................................................................CCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAG-TGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586757" ref_strand="+" ref_description="SGN-E586757 [75591]">
      <seq>cggcacgaggcctcgtgccgaattcggcancgagcgcactagtgagaaaaatgattccttcaaaaagcccaaaaagggtgatgttggagaagaggatgtagagatagaggatgatgaaccagctacccattttcctccagtggaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtagtagtagctctagtagttctagcagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttgagatttgttgattcaagcagtgcatatgttgttgaattttcttttatcgaggtataaagttggggacttgaattcttttgttttgcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="3918" stop="2880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3624" g_stop="3402" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="251" r_length="218" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3316" g_stop="3165" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="400" r_length="149" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E586757" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3624" e_stop="3402"/>
          <exon e_start="3316" e_stop="3165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAA</genome_strand>
        <mrna_strand>GC-GC-ACTAGTGAGAAAAATGATTCCTTCAAAAAGCCCAAAAAGGGTGATGTTGGAGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCAGTGGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAA---TGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGCAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATA---TGTTGTTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTTGAATTCTTTTGTTTTGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624155" ref_strand="+" ref_description="SGN-E624155 [GI|57282313]">
      <seq>atggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgccggtggtggattcatggggaaaacccctttttctcatacacaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatattgatgaatcgccggccgtgacgcaaacagcgtctgatgatgcctattcgttcaatcaacggccgattgaatcaacgaccaacgttgacggccttaatttcggaggatatttgacttttaacgtcgtctcttacaacaaaggcgaggtcaatgagctacggagtcggctgttggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccagatcacaaggcaaatcgaagaaactatctggaaataaacggcctaccccttccggatccagtaaagatccgaaaaagctcccaaacggagttgaaaataggaattttggtaatcctgttggtggtggtggtgttaaggccatcggaacggaaagtatgatgaaggaatgtaggcagattttggcaaagctgatgaagcataaaaatgggtggattttcaatatccctgttgatgctgaagccctgggtcttcatgattaccaccaaattattaagcgacccatagatttggggacggttaaatcaaatttggctaagaatttttacccttccccttttgaatttgctgctgatgtaaggcttactttcaataatgccttgttgtataaccctaaaacagatcaagttaatggcttcgctgagcagcttctcggacgatttgaggacatgtttagaccgctccaggataaaatgaataagcttgaaggcggcaggagggattatcatcctgtagatgagttgcaggggagttcttggaatcacatacctacgcccgagagagtgaagaaacccaaggctactccagtccctcacatttcaaagaagcaagagcggatgcaaaatcattctagtgcgtcaacaccctctttgccagtgccaccacccaatccaccagcccggcagcagtccccattgtcaactccttccccagtgagggcaccaccctcgaagcctgaatcagctgctaaagttcctgctatgggaaagcaacctaaaccgagggccaaggatccaaataaaagagtgatgaatatggaggagaagcataaattaggagttgggttgcaaagtttgccacaagagaagatgccgcagttggtgcagattataaggaagaggaatgaacatttagcccaagacggtgacgagattgagctcgacattgaggcccttgacaccgagactctatgggagcttgatcggtttgtgaccaattggaagaagatggtgagcaaaactaagaggcaggcattgatgattaacaatttgggaccaccatccgccagtgctgcagcttctgctgcaactacatccgtcgccgaagcagatgggcctaccactagtgagaaaaatgattccttcaaaaagcccaaaaagggtgatgttggagaagaggatgtagagatagaggatgatgaaccagctacccattttcctccagtggaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtagtagtagctctagtagttctagcagctcaagcagtggctcctcctcttctagtgattctgattcaggaagttcatccggaagtgactctgatgctgatgatgcacactcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5555" stop="2958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5255" g_stop="3729" g_length="1527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1530" r_length="1530" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3624" g_stop="3402" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1531" r_stop="1750" r_length="220" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3316" g_stop="3258" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1751" r_stop="1809" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E624155" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>1809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5255" e_stop="3729"/>
          <exon e_start="3624" e_stop="3402"/>
          <exon e_start="3316" e_stop="3258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATG---AACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGA</genome_strand>
        <mrna_strand>ATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCCGGTGGTGGATTCATGGGGAAAACCCCTTTTTCTCATACACAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATTGATGAATCGCCGGCCGTGACGCAAACAGCGTCTGATGATGCCTATTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTTAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGGCGAGGTCAATGAGCTACGGAGTCGGCTGTTGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCACAAGGCAAATCGAAGAAACTATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAAGATCCGAAAAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCTGTTGGTGGTGGTGGTGTTAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCATAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCCTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATAGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTAAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGAGGGATTATCATCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACGCCCGAGAGAGTGAAGAAACCCAAGGCTACTCCAGTCCCTCACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGGCAGCAGTCCCCATTGTCAACTCCTTCCCCAGTGAGGGCACCACCCTCGAAGCCTGAATCAGCTGCTAAAGTTCCTGCTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGTGATGAATATGGAGGAGAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGACGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACTAAGAGGCAGGCATTGATGATTAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCTGCTGCAACTACATCCGTCGCCGAAGCAGATGGG........................................................................................................CCTACCACTAGTGAGAAAAATGATTCCTTCAAAAAGCCCAAAAAGGGTGATGTTGGAGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCAGTGGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAA---TGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGCAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416838" ref_strand="+" ref_description="SGN-E416838 [STM-23-B2]">
      <seq>aggcaccctcgaagcctgaatcagctgctaaagttcctgctatgggaaagcaacctaaaccgagggccaaggatccaaataaaagaagtgatgaaatatggaggagaagcataaattaggagttgggttgcaaagtttgccacaagaagaagatgccgcagttggtgcagattataaggaagaaggaatgaacatttagcccaagacggtgacgagattgagctcgacattgaggcccttgacaccgagaactctatgggagcttgatcggtttgtgaccaattggaagaagaatggtgagcaaaactaagaggcaggcattgatgattaacaatttgggaccaccatccgccagtgctgcagcttctgctgcaactacatccgtcgccgaagcagatgggcctaccactagtgagaaaaatgattccttcaaaaagcccaaaaagggtgatgttggagaagaggatgtagagatagaggatgatgaaccagctacccattttcctccagtggaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtgggtagtagtagctctagtagttctagcagctcaagcagtggctcctcctcttctagtggtatatgctctacttcaaatgcgaaaaatgatatcttttgcgaactcagtagagtagattaattgaacataatttcttgtgcagattctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="4414" stop="3009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4123" g_stop="3729" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3624" g_stop="3309" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="714" r_length="313" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E416838" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4123" e_stop="3729"/>
          <exon e_start="3624" e_stop="3309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGA-GAGATG-AATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAG-AGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAG-AGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAG-ACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAG-ATGGTGAGCAAAACCAAGAGGCAAGCCTTGATG---AACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGAT</genome_strand>
        <mrna_strand>AGGCACC--CT-CGAAGCCTGAATCAGCTGCTAAAGTTCCTGCTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAAGTGATGAAATATGGAGGAGAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAAGGAATGAACATTTAGCCCAAGACGGTGACGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGAACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGAATGGTGAGCAAAACTAAGAGGCAGGCATTGATGATTAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCTGCTGCAACTACATCCGTCGCCGAAGCAGATGGG........................................................................................................CCTACCACTAGTGAGAAAAATGATTCCTTCAAAAAGCCCAAAAAGGGTGATGTTGGAGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCAGTGGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGT-G-GGTAGTAGTAGCTCTAGTAGTTCTAGCAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGCTCTACTTCAAATGC-GAAAAATGATATCTTTTGCGAACTCAGTAGAGTAGATTAATTGAACATAATTTCTTGTGCAGATTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450773" ref_strand="+" ref_description="SGN-E450773 [cSTS-10-K8]">
      <seq>ctcgaagcctgaatcagctgctaaagttcctgctatgggaaagcaacctaaaccgagaggccaaggatccaaataaaagagagatgaatatggaggagaagcataaattaggagttgggttgcaaagtttgccacaagagaagatgccgcagttggtgcagattataaggaagaggaatgaacatttagcccaagacggtgacgagattgagctcgacattgaggcccttgacaccgagactctatgggagcttgatcggtttgtgaccaattggaagaagatggtgagcaaaactaagaggcacgcattgatgattaacaatttgggaccaccatccgccagtgctgcagcttctgctgcaactacatccgtcgccgaagcagatgggcctaccactagtgagaaaaatgattccttcaaaaagcccaaaaagggtgatgttggagaagaggatgtagagatagaggatgatgaaccagctacccattttcctccagtggaaattgacaaggatgaacgtggtgggcgggatcaagagaatggtggtggtggtagtagtagctctagtagttctagcagctcaagcaggggctcctcctcttctagtgattctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="4414" stop="3095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4114" g_stop="3729" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3624" g_stop="3402" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="609" r_length="220" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.889" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3316" g_stop="3309" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="617" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E450773" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4114" e_stop="3729"/>
          <exon e_start="3624" e_stop="3402"/>
          <exon e_start="3316" e_stop="3309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAG-GGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATG---AACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGAT</genome_strand>
        <mrna_strand>CT-CGAAGCCTGAATCAGCTGCTAAAGTTCCTGCTATGGGAAAGCAACCTAAACCGAGAGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAGAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGACGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACTAAGAGGCACGCATTGATGATTAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCTGCTGCAACTACATCCGTCGCCGAAGCAGATGGG........................................................................................................CCTACCACTAGTGAGAAAAATGATTCCTTCAAAAAGCCCAAAAAGGGTGATGTTGGAGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCAGTGGAAATTGACAAGGATGAACGTGGTGGGCGGGATCAAGAGAA---TGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGCAGCTCAAGCAGGGGCTCCTCCTCTTCTAGTG.....................................................................................ATTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439509" ref_strand="+" ref_description="SGN-E439509 [cSTA-12-M10]">
      <seq>ccaccctcgaagtctgaatcagctgctaaagttcctgctatgggaaagcaacctaaacccgaggccaaggatccaaataaaagagtgatgaatatggaggagaagcataaattaggagttgggttgcaaagtttgccacaagagaaaaagccgcagttggtgcagattataaggaagaggaatgaacatttagcccaagacggtgaccagattgagctcgacattgaggcccttgacaccgagactctatgggagcttgatcggtttgtgaccaattggaagaagatggtgagcaaaactaagaggcaggcattgatgattaacaatttgggaccaccatcccccagtgctgcagcttctgctgcaactacatccgtcgccgaagcagatgggcctaccactagtgagaaaaatgattccttcaaaaagcccaaaaagggtgatgttggagaagaggatgtagagatagaggatgatgaaccagctacccattttcctccagtggaaattgagaaggatgaaggtggtgggcgggatcaagagaatggtggtggtggtagtagtagctctagtagttctagcagctcaagcagtggctcctcctcttctagtggtatatgctctacttcaaatgcgaaaaaatgatatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="4414" stop="3064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4118" g_stop="3729" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3624" g_stop="3363" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="652" r_length="259" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E439509" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4118" e_stop="3729"/>
          <exon e_start="3624" e_stop="3363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATG---AACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTT</genome_strand>
        <mrna_strand>CCACCCTCGAAGTCTGAATCAGCTGCTAAAGTTCCTGCTATGGGAAAGCAACCTAAACCCGAGGCCAAGGATCCAAATAAAAGAGTGATGAATATGGAGGAGAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAAAAGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGACCAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACTAAGAGGCAGGCATTGATGATTAACAATTTGGGACCACCATCCCCCAGTGCTGCAGCTTCTGCTGCAACTACATCCGTCGCCGAAGCAGATGGG........................................................................................................CCTACCACTAGTGAGAAAAATGATTCCTTCAAAAAGCCCAAAAAGGGTGATGTTGGAGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCAGTGGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAA---TGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGCAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGCTCTACTTCAAATGCGAAAAAATGATATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731986" ref_strand="+" ref_description="SGN-E731986 [LA28DD10]">
      <seq>tggaggaaaagcataaattaggagttgggttgccaagtttgccacaagagaagatgccgcagttggtgcagattataaggaagaggaatgaacatttagccccagacggtgatgagattgagctcgacattgaggcccttgacaccgagactctatgggagcttgatccggtttgtgaccaattggaagaagatggtgagcaaaaccaagaggcaagccttgatgaacaatttgggaccaccatccgccagtgctgcagcttcagctgcaactacatccgttgccgaagcagatgggccctactactagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="4324" stop="3429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4024" g_stop="3729" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3624" g_stop="3612" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="311" r_length="14" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E731986" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4024" e_stop="3729"/>
          <exon e_start="3624" e_stop="3612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGAT-CGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAG-CCTACTACTAGTG</genome_strand>
        <mrna_strand>TGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCCAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCCAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGG........................................................................................................CCCTACTACTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346515" ref_strand="+" ref_description="SGN-E346515 [cTOF-28-E11]">
      <seq>acgaacgccggtattaagatttgccggtgtaattcatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgcaggtggtggattcatggggaaaaccccttattctcatacgcaactgaaccctaatcacaaccctaaccctaaaacagatcaagttaatggcttcgctgagcagcttctcggacgatttgaggacatgtttagaccgctccaggataaaatgaataagcttgaaggcggcaggcgggattatcaccctgtagatgagttgagggggagttcttggaatcacatacctactcccgagagagtgaagaaacccaaacctaccccagtccctaacatttcaaagaagcaagagcggatgcaaaatcattctagtgcgtcaacaccctctttgccagtgccaccacccaatccaccagcccgacagcagtcaccattgtcaactccgtccccagtgagggcaccagctgcgaagcctcaatcagctgctaaagttcctactatgggaaagcaacctaaaccgagggccaaggatccaaataaaagagagatgaatatggaggaaaagcataatnaggagnttgggttgcaaagtttgccacaagagaagatgccgcagttggtgcagattataaggaagaggaatgaacatttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5590" stop="3626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5290" g_stop="5119" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5118" i_stop="4439" i_length="680">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.689" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4438" g_stop="3926" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="684" r_length="513" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E346515" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5290" e_stop="5119"/>
          <exon e_start="4438" e_stop="3926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAG-TTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAG</genome_strand>
        <mrna_strand>ACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAA-AACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGAGGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCAT-AATNAGGAGNTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334140" ref_strand="+" ref_description="SGN-E334140 [cTOD-21-O21]">
      <seq>atatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccagatctcaaggcaaatcgaagaaacaatctggaaataaacggcctaccccttccggatccagtaaggatctgaagaagctcccaaacggagttgaaaataggaattttggtaatccaggtggtgtggatggtgtgaaggccatcggaacggaaagtatgatgaaggaatgtaggcagattttggcaaagctgatgaagcacaaaaatgggtggattttcaatatccctgttgatgctgaagccttgggtcttcatgattaccaccaaattattaagcgacccatggatttggggacggttaaatcaaatttggctaagaatttttacccttccccttttgaatttgctgctgatgttaggcttactttcaataatgccttgttgtataaccctaaaacagatcaagttaatggcttcgctgagcagcttctcggacgatttgaggacatgtttagaccgctccaggataaaatgaataagcttgaaggcggcaggcgggattatcaccctgtagatgagttgcaggggagttcttgggatcacatacctactcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5274" stop="3983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4974" g_stop="4283" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E334140" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4974" e_stop="4283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCG</genome_strand>
        <mrna_strand>ATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGGATCACATACCTACTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333252" ref_strand="+" ref_description="SGN-E333252 [cTOD-20-D14]">
      <seq>gatatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccagatctcaaggcaaatcgaagaaacaatctggaaataaacggcctaccccttccggatccagtaaggatctgaagaagctcccaaacggagttgaaaataggaattttggtaatccaggtggtgtggatggtgtgaaggccatcggaacggaaagtatgatgaaggaatgtaggcagattttggcaaagctgatgaagcacaaaaatgggtggattttcaatatccctgttgatgctgaagccttgggtcttcatgattaccaccaaattattaagcgacccatggatttggggacggttaaatcaaatttggctaagaatttttacccttccccttttgaatttgctgctgatgttaggcttactttncataatgccttgttgtataaccctaaaacagatcaagttaatggcttcgctgagcagcttctcggacgatttgaggacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5275" stop="4088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4975" g_stop="4388" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E333252" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4975" e_stop="4388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGT</genome_strand>
        <mrna_strand>GATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTNCATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334333" ref_strand="+" ref_description="SGN-E334333 [cTOD-21-O22]">
      <seq>atatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccagatctcaaggcaaatcgaagaaacaatctggaaataaacggcctaccccttccggatccagtaaggatctgaagaagctcccaaacggagttgaaaataggaattttggtaatccaggtggtgtggatggtgtgaaggccatcggaacggaaagtatgatgaaggaatgtaggcagattttggcaaagctgatgaagcacaaaaatgggtggattttcaatatccctgttgatgctgaagccttgggtcttcatgattaccaccaaattattaagcgacccatggatttggggacggttaaatcaaatttggctaagaatttttacccttccccttttgaatttgctgctgatgttaagcttactttcataatgccttgttgtataccctaaaacagatcaagttaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5274" stop="4125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4974" g_stop="4425" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E334333" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4974" e_stop="4425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGC</genome_strand>
        <mrna_strand>ATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAAGCTTACTTTC-ATAATGCCTTGTTGTAT-ACCCTAAAACAGATCAAGTTAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455230" ref_strand="+" ref_description="SGN-E455230 [cSTS-25-P11]">
      <seq>ctcatacacaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacgtctaatggtcggcatattgatgaatcgccggccgtgacgcaaacagcgtccgatgatgcctattcgttcaatcaacggccgattgaatcaacgaccaacgttgacggccttaatttcggaggatatttgacttttaacgtcgtctcttacaacaaaggcgaggtcaatgagctacggagtcggctgttggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccagatcacaaggcaaatcgaagaaactatctggaaataaacggcctaccccttccggatccagtaaagatccgaaaaagctcccaaacggagttgaaaataggaattttggtaatcctgttggtggtggtggtgttaaggccatcggaacggaaagtatgatgaaggaatgtaggcagattttggcaaagctgatgaagcataaaaatgggtggattttcaatatccctgttgatgctgaagccctgngtcttcatgattaccaccaaattattaagcgacccatggatttagggacggttaaatcaaatttggctaagaacttttacccttccccttttgaatttgctgctgatgtaaggcttactttcataatgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5464" stop="4159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5164" g_stop="4459" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E455230" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5164" e_stop="4459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTT</genome_strand>
        <mrna_strand>CTCATACACAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACGTCTAATGGTCGGCATATTGATGAATCGCCGGCCGTGACGCAAACAGCGTCCGATGATGCCTATTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTTAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGGCGAGGTCAATGAGCTACGGAGTCGGCTGTTGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCACAAGGCAAATCGAAGAAACTATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAAGATCCGAAAAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCTGTTGGTGGTGGTGGTGTTAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCATAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCCTGNGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTAGGGACGGTTAAATCAAATTTGGCTAAGAACTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTAAGGCTTACTTTC-ATAATGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306898" ref_strand="+" ref_description="SGN-E306898 [cLEY-11-E17]">
      <seq>gcaactgtaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatggatgattcgccagcagtgacgcaaacggcgtctgatgatgcctactcgttcaatcaacggccgattgaatcaacgaccaacgttgacggcctgaatttcggaggatatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccagatctcaaggcaaatcgaagaaacaatctggaaataaacggcctaccccttccggatccagtaaggatctgaagaagctcccaaacggagttgaaaataggaattttggtaatccaggtggtgtggatggtgtgaaggccatcggaacggaaagtatgatgaaggaatgtaggcagattttggcaaagctgatgaagcacaaaaatgggtggattttcaatatccctgttgatgctgaagccttgggtcttcatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5457" stop="4279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5157" g_stop="4579" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E306898" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5157" e_stop="4579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTA</genome_strand>
        <mrna_strand>GCAACTGTACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308061" ref_strand="+" ref_description="SGN-E308061 [cLEY-14-N17]">
      <seq>caatcaacgggcgattgaatcaacgaccaacggtgacggcctgaatttcggaggatatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaagtcgaacagatcccatacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccgcagatctcaaggcaaatcgaagaaacaatctggaaataaacgggctaccccttgcggatccagtaaggatctgaagaagcttccaaacggagttgaaaataggaattttggtaatccaggtggtgtggatggtgagaaggccatcggaacggaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5328" stop="4382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5028" g_stop="4682" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E308061" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5028" e_stop="4682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTA</genome_strand>
        <mrna_strand>CAATCAACGGGCGATTGAATCAACGACCAACGGTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAAGTCGAACAGATCCCATACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCGCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGGCTACCCCTTGCGGATCCAGTAAGGATCTGAAGAAGCTTCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGAGAAGGCCATCGGAACGGAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450505" ref_strand="+" ref_description="SGN-E450505 [cSTS-9-F11]">
      <seq>ttcaaacccttgccttcatttgggttccaacatttaaagagttccttttttcttccttgtttggttgattaaagccggaaattggaggtcgggtggagttttgttggattccggcgggcgcgtagctatcacgtaccttttcaatttcatgatttcaacaccatctgataacgataaattccaccagagaaacgccggtattaagccttgccggtataatttatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgccggtggtggattcatggggaaaacccctttttctcatacacaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatattgatgaatcgccggccgtgacgcaaacagcgtctgatgatgcctattcgttcaatcaacggccgattgaatcaacgaccaacgttgacggccttaatttcggaggatatttgacttttaacgtcgtctcttacaacaaaggcgaggtcaatgagctacggagtcggctgttggcggaggtcgaacagatccgaaaccctcaagatcgaatcgaatccggtcaattgagcaccaccaaccccagatcacaaggcaaatcgaagaaactatctggaaataaacggcctaccccttccggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5778" stop="4480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5478" g_stop="4780" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E450505" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5478" e_stop="4780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAA-CCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATC</genome_strand>
        <mrna_strand>TTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTAAAGAG-TTCCTTTTTTCTTCCTTGTTTGGTTGATTAAAGCCGGAAATTGGAGGTCGGGTGGAGTTTTGTTGGATTCCGGCGGGCGCGTAGCTATCACGTACCTTTTCAATTTCATGATTTCAACACCATCTGATAACGATAAATTCCACCAGAGAAACGCCGGTATTAAGCCTTGCCGGTATAATTTATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCCGGTGGTGGATTCATGGGGAAAACCCCTTTTTCTCATACACAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATTGATGAATCGCCGGCCGTGACGCAAACAGCGTCTGATGATGCCTATTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTTAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGGCGAGGTCAATGAGCTACGGAGTCGGCTGTTGGCGGAGGTCGAACAGATCCGAAACCCTCAA-GATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCACAAGGCAAATCGAAGAAACTATCTGGAAATAAACGGCCTACCCCTTCCGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366071" ref_strand="+" ref_description="SGN-E366071 [cLPT-15-N11]">
      <seq>ttcatttgggttccaacatttatagagttttctttttacttccttctttggttgattaaagccggaaattgaaggtcgggtggagtttcggtagattccggcaggcgcgtagctgtcacgtacctttttaatttcatgatttcaacaccatttgataacgataaattccaccagaaggacgccggtattaagatttgccggtggtggattcatggggaaaaccccttattctcatacgcaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatggatgattcgccggcagtgacgcaaacggcgtctgatgatgcctactcgttcaatcaacggccgattgaatcaacgaccaacgttgacggccttaatttcggaggatatttgacttttaacgtcgtctcttacaacaaagtcgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcaccaccaaccccaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5764" stop="4536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5464" g_stop="5265" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5264" i_stop="5195" i_length="70">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5194" g_stop="4836" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="559" r_length="359" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E366071" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5464" e_stop="5265"/>
          <exon e_start="5194" e_stop="4836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGA</genome_strand>
        <mrna_strand>TTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAGCCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTTTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGAAGGACGCCGGTATTAAGATTTGCCG......................................................................GTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCGGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTTAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGTCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292231" ref_strand="+" ref_description="SGN-E292231 [cLET-1-F6]">
      <seq>ttgccttcatttgggttccaacatttatagagttttctttttacttccttctttggttgattaaaaccggaaattgaaggtcgggtggagtttcggtagattccggcaggcgcgtagctgtcacgtacctctttaatttcatgatttcaacaccatttgataacgataaattccaccagacgaacgccggtattaagatttgccggtgtaattcatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgcaggtggtggattcatggggaaaaccccttattctcatacgcaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatggatgattcgccagcagtgacgcaaacggcgtctgatgatgcctactcgttcaatcaacggccgattgaatcaacgaccaacgttgacggcctgaatttcggaggatatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattgagcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5769" stop="4548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5469" g_stop="4848" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E292231" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5469" e_stop="4848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACC</genome_strand>
        <mrna_strand>TTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309683" ref_strand="+" ref_description="SGN-E309683 [cLEY-26-G17]">
      <seq>aaacccttgccttcatttgggttccaacatttatagagttttctttttacttccttctttggttgattaaaaccggaaattgaaggtcgggtggagtttcggtagattccggcaggcgcgtagctgtcacgtacctctttaatttcatgatttcaacaccatttgataacgataaattccaccagacgaacgccggtattaagatttgccggtgtaattcatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgcaggtggtggattcatggggaaaaccccttattctcatacgcaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatggatgattcgccagcagtgacgcaaacggcgtctgatgatgcctactcgttcaatcaacggccgattgaatcaacgaccaacgttgacggcctgaatttcggaggatatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaatccggtcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5775" stop="4554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5475" g_stop="4854" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E309683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5475" e_stop="4854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTG</genome_strand>
        <mrna_strand>AAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305581" ref_strand="+" ref_description="SGN-E305581 [cLEX-14-C14]">
      <seq>cttgccttcatttgggttccaacatttatagagttttctttttacttccttctttggttgattaaaaccggaaattgaaggtcgggtggagtttcggtagattccggcaggcgcgtagctgtcacgtacctctttaatttcatgatttcaacaccatttgataacgataaattccaccagacgaacgccggtattaagatttgccggtgtaattcatggcatccgccgtcttatctagccggaatgaatctagctgggctcagtctggtggtgcaggtggtggattcatggggaaaaccccttattctcatacgcaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatggatgattcgccagcagtgacgcaaacggcgtctgatgatgcctactcgttcaatcaacggccgattgaatcaacgaccaacgttgacggcctgaatttcggaggatatttgacttttaacgtcgtctcttacaacaaagccgaggtcaatgagctacggagtcggctgatggcggaggtcgaacagatccgaaacctcaaggatcgaatcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5770" stop="4566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5470" g_stop="4866" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E305581" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5470" e_stop="4866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAA</genome_strand>
        <mrna_strand>CTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTATCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437172" ref_strand="+" ref_description="SGN-E437172 [cSTA-2-N22]">
      <seq>cttcaaacccttgccttcatttgggttccaacatttaaagagttccttttttcttccttgtttggttgattaaagccggaaattggaggtcgggtggagttttgttggattccggcgggcgcgtagctatcacgtaccttttcaatttcatgatttcaacaccatctgataacgataaattccaccagagaaacgccggtattaagccttgccggtataatttatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgccggtggtggattcatggggaaaacccctttttctcatacacaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatattgatgaatcgccggccgtgacgcaaacagcgtctgatgatgcctattcgttcaatcaacggccgattgaatcaacgaccaacgttgacggccttaatttcggaggatatttgacttttaacgtcgtctcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5779" stop="4647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5479" g_stop="4947" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E437172" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5479" e_stop="4947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTAC</genome_strand>
        <mrna_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTAAAGAG-TTCCTTTTTTCTTCCTTGTTTGGTTGATTAAAGCCGGAAATTGGAGGTCGGGTGGAGTTTTGTTGGATTCCGGCGGGCGCGTAGCTATCACGTACCTTTTCAATTTCATGATTTCAACACCATCTGATAACGATAAATTCCACCAGAGAAACGCCGGTATTAAGCCTTGCCGGTATAATTTATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCCGGTGGTGGATTCATGGGGAAAACCCCTTTTTCTCATACACAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATTGATGAATCGCCGGCCGTGACGCAAACAGCGTCTGATGATGCCTATTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTTAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282189" ref_strand="+" ref_description="SGN-E282189 [cLES-4-N2]">
      <seq>ttgccttcatttgggttccaacatttatagagttttctttttacttccttctttggttgattaaaaccggaaattgaaggtcgggtggagtttcggtagattccggcaggcgcgtagctgtcacgtacctctttaatttcatgatttcaacaccatttgataacgataaattccaccagacgaacgccggtattaagatttgccggtgtaattcatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggtgcaggtggtggattcatggggaaaaccccttattctcatacgcaactgaaccctaatcacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatggatgattcgccagcagtgacgcaaacggcgtctgatgatgcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5769" stop="4734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5469" g_stop="5034" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E282189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5469" e_stop="5034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTAC</genome_strand>
        <mrna_strand>TTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415522" ref_strand="+" ref_description="SGN-E415522 [STM-21-B5]">
      <seq>cttcaaacccttgccttcatttgggttccaacatttaaagagttccttttttcttccttgtttggttgattaaagccggaaattggaggtcgggtggagttttgttggattccggcgggcgcgtagctatcacgtaccttttcaatttcatgatttcaacaccatctgataacgataaattccaccagagaaacgccggtattaagccttgccggtataatttatggcatccgccgtcttagctagccggaatgaatctagctgggctcagtctggtggggccggtggtggattcatggggaaaacccctttttctcatacacaactgaaccctaatcacaaccctaaccctatgaagaagcagaagcaattccatcacacctctaatggtcggcatattgatgaatcgacggccgtgacgcagacagcgtctgatgatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5779" stop="4736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5479" g_stop="5036" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E415522" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5479" e_stop="5036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCT</genome_strand>
        <mrna_strand>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTAAAGAG-TTCCTTTTTTCTTCCTTGTTTGGTTGATTAAAGCCGGAAATTGGAGGTCGGGTGGAGTTTTGTTGGATTCCGGCGGGCGCGTAGCTATCACGTACCTTTTCAATTTCATGATTTCAACACCATCTGATAACGATAAATTCCACCAGAGAAACGCCGGTATTAAGCCTTGCCGGTATAATTTATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGGGCCGGTGGTGGATTCATGGGGAAAACCCCTTTTTCTCATACACAACTGAACCCTAATCACAACCCTAACCCTATGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATTGATGAATCGACGGCCGTGACGCAGACAGCGTCTGATGATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567423" ref_strand="+" ref_description="SGN-E567423 [11546]">
      <seq>caaaccctttggccttcatttgggttccaacatttaaagagttccttttttcttccttttttggttgattaaagccggaaattggaggtcgggtggagttttgttggattccggcgggcgcgtagctatcacgtaccttttcaatttcatgatttcaacaccatctgataacgataaattccaccagagaaacgccggtattaagccttgccggtgtaatttatggcatccgccgtcttagctagcgggaatgaatctagctgggctcagtctggtggtgccggtggtggattcatgggggaaaacccctttttctcatacacaaagtgaaccctaatctacaaccctaaccctaagaagaagcagaagcaattccatcacacctctaatggtcggcatatttgatgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="5776" stop="4780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5476" g_stop="5071" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E567423" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5476" e_stop="5071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCC-TT-GCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCAT-GGGGAAAACCCCTTATTCTCATACGC-AACTGAACCCTAATC-ACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATA-TGGATGATTC</genome_strand>
        <mrna_strand>CAAACCCTTTGGCCTTCATTTGGGTTCCAACATTTAAAGAG-TTCCTTTTTTCTTCCTTTTTTGGTTGATTAAAGCCGGAAATTGGAGGTCGGGTGGAGTTTTGTTGGATTCCGGCGGGCGCGTAGCTATCACGTACCTTTTCAATTTCATGATTTCAACACCATCTGATAACGATAAATTCCACCAGAGAAACGCCGGTATTAAGCCTTGCCGGTGTAATTTATGGCATCCGCCGTCTTAGCTAGCGGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCCGGTGGTGGATTCATGGGGGAAAACCCCTTTTTCTCATACACAAAGTGAACCCTAATCTACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATTTGATGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283725" ref_strand="+" ref_description="SGN-E283725 [cLES-1-G3]">
      <seq>ttttctctgttgagttactaattttcaaaacatgatgaatgaaccaccaaaatatggttatccatatccctctcaaggtcaagggtattatcaaggtggtcctcctcctgtgatggcaccaccaacatatgctgctcctcctcctcctcagaaaaatagaggttttcttgaaggatgtctagcagctctgtgttgttgctgcctgttagatgagtgttgctgtgatccctctgtaatctgtgtcttgtaattaattattaaggtcacctttttatttttgctttaatttgtagtacatataccaatgtataagaattgtataatgtgaataagttctttatgaacactattattaggagttatattgttgtaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="14899" stop="12688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14599" g_stop="14517" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14516" i_stop="14314" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14313" g_stop="14220" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="177" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14219" i_stop="13188" i_length="1032">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13187" g_stop="12989" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="375" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12988" i_stop="12929" i_length="60">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.369" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12928" g_stop="12920" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="384" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E283725" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14599" e_stop="14517"/>
          <exon e_start="14313" e_stop="14220"/>
          <exon e_start="13187" e_stop="12989"/>
          <exon e_start="12928" e_stop="12920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTGTTGAGTTACTAATTTTCAAAACATGATGAATGAACCACCAAAATATGGTTATCCATATCCCTCTCAAGGTCAAGGTAAAAATAACACATGATTCATTTTTCAAATTTATTTTGTGTATGCTGGCTAGATTATGGTTTGTTTATTAGAAACAATCTTTCTGATATTAAGAAATTAATAAAATTTGCCTAGATTTTTGTTTTTTTTGAAAAAATAATAATTTGTTAAGCATATCAATATTTTCTTTGATTAATTTTGTTTGTGAAATATTTATAAACAGGGTATTATCAAGGTGGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTCCTCCTCCTCCTCAGAAAAATAGAGGTTTTCTTGAAGGATGGTAAGCAATTTGATTTACATAAATTAAACTCTTTTCTGGCTCAATTTATGTATCACAATTTAAATTTTTATAGTCAACCAATTTAAGTTTGGTCATGATTTTGGTACGAAATCTTTAAATTTTCAAAAATATAACTCACTATAATAGACAATTTGAAATATTTAGAGTGTGTTTGGTATCAAGGAAAGTGTTTTCCTAGAAAACAAGTGGATATTTGACTTGTTTTCTTATGTTTGGTGGACGAGTAGAAAATATTTCTGAAAAAATATGTTATTGTTTGTTTTTTGAATGAAAAATGTTTTTGAGAAATCTTTTTTATTTTTTACTAGAGACGAAAATAATTTTTGAAGTTGAATTTCTTTTGCCAAATTCAAAACTTTTGCGTGGTAGGGGTGGGGGGTTCGAAGGTAGGAATGAAAAAATTAAATTTTAAAGTTGATTTTATTTTTTAAAAATAATATTAATTTTTTTTTATTTGTGTGTGGGTGGGGGGGGGGGGAAGTGGTAGTGGGGTTGGGCGGAGGGTTGTTGTAAAAAATGAAATCTTAAAGTTGAAAATATTTTTTAAAAAATAAACTTATTTTAGGGGTAGGGGGTGGGTTGGGGGCTAATAGGTGTGGATGCGGGGTTGGAAGGGGTGAGTGGTGCGGGAATGGGGGGCTAGTATGGTTGGGTGGGTAGGGGGAGGTTGAAATGTATTTTGAAAAAATATTTTCCTTAAATTTTGAAAGAAAATTATTTTCTTTAAATTAATTTTCTTTAAATTTGAGGAAGATAAATTGATTTGAATAATATTTTCTAAAATATTTGACCCAACTAAACATAAAAAGATTGAAAGATATTTATATTTTTCTTCATACCAAACGCACCCTTAAAAGTACATAAAAGCATTATAATTAAAGATAAATTTGTTCAAATTTTAAAATTCAAAAGATTATAAAATAAATTACGAATGGGAGGGAGAATGCAATTTTGGTATTTGTGGTTCTCTTATTTTGAATTTTTTTAATTTTGTGTTGTGATTTGTTGCAGTCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTCTTGTAATTAATTATTAAGGTCTACCTTTTTATTTTTGCTTTAATTTGTAGTACATATACCAATGTATAAGAATTGTATAATGTGAATAAGTTCTTTATGAACACTATTATTAGGAGTTATATTGTTGTAATAATCTTTTTGATTTGAATCATTGAACTTCTATTTCATCTATTTTTTGGTTGTCTACCTTAGAAATTAGAA</genome_strand>
        <mrna_strand>TTTTCTCTGTTGAGTTACTAATTTTCAAAACATGATGAATGAACCACCAAAATATGGTTATCCATATCCCTCTCAAGGTCAAG...........................................................................................................................................................................................................GGTATTATCAAGGTGGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTCCTCCTCCTCCTCAGAAAAATAGAGGTTTTCTTGAAGGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTCTTGTAATTAATTATTAAGGTC-ACCTTTTTATTTTTGCTTTAATTTGTAGTACATATACCAATGTATAAGAATTGTATAATGTGAATAAGTTCTTTATGAACACTATTATTAGGAGTTATATTGTTGTAATA............................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283726" ref_strand="+" ref_description="SGN-E283726 [cLES-1-G3](-)">
      <seq>catatccctctcaaggtcaagggtattatcaaggtggtcctcctcctgtgatggcaccaccaacatatgctgctcctcctcctcctcagaaaaatagaggttttcttgaaggatgtctagcagctctgtgttgttgctgcctgttagatgagtgttgctgtgatccctctgtaatctgtgtcttgtaattaattattaaggtcacctttttatttttgctttaatttgtagtacatataccaatgtataagaattgtataatgtgaataagttctttatgaacactattattaggagttatattgttgtaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="14837" stop="12688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14537" g_stop="14517" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14516" i_stop="14314" i_length="203">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14313" g_stop="14220" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="115" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14219" i_stop="13188" i_length="1032">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13187" g_stop="12989" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="313" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12988" i_stop="12929" i_length="60">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.369" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12928" g_stop="12921" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="321" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E283726" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14537" e_stop="14517"/>
          <exon e_start="14313" e_stop="14220"/>
          <exon e_start="13187" e_stop="12989"/>
          <exon e_start="12928" e_stop="12921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCCCTCTCAAGGTCAAGGTAAAAATAACACATGATTCATTTTTCAAATTTATTTTGTGTATGCTGGCTAGATTATGGTTTGTTTATTAGAAACAATCTTTCTGATATTAAGAAATTAATAAAATTTGCCTAGATTTTTGTTTTTTTTGAAAAAATAATAATTTGTTAAGCATATCAATATTTTCTTTGATTAATTTTGTTTGTGAAATATTTATAAACAGGGTATTATCAAGGTGGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTCCTCCTCCTCCTCAGAAAAATAGAGGTTTTCTTGAAGGATGGTAAGCAATTTGATTTACATAAATTAAACTCTTTTCTGGCTCAATTTATGTATCACAATTTAAATTTTTATAGTCAACCAATTTAAGTTTGGTCATGATTTTGGTACGAAATCTTTAAATTTTCAAAAATATAACTCACTATAATAGACAATTTGAAATATTTAGAGTGTGTTTGGTATCAAGGAAAGTGTTTTCCTAGAAAACAAGTGGATATTTGACTTGTTTTCTTATGTTTGGTGGACGAGTAGAAAATATTTCTGAAAAAATATGTTATTGTTTGTTTTTTGAATGAAAAATGTTTTTGAGAAATCTTTTTTATTTTTTACTAGAGACGAAAATAATTTTTGAAGTTGAATTTCTTTTGCCAAATTCAAAACTTTTGCGTGGTAGGGGTGGGGGGTTCGAAGGTAGGAATGAAAAAATTAAATTTTAAAGTTGATTTTATTTTTTAAAAATAATATTAATTTTTTTTTATTTGTGTGTGGGTGGGGGGGGGGGGAAGTGGTAGTGGGGTTGGGCGGAGGGTTGTTGTAAAAAATGAAATCTTAAAGTTGAAAATATTTTTTAAAAAATAAACTTATTTTAGGGGTAGGGGGTGGGTTGGGGGCTAATAGGTGTGGATGCGGGGTTGGAAGGGGTGAGTGGTGCGGGAATGGGGGGCTAGTATGGTTGGGTGGGTAGGGGGAGGTTGAAATGTATTTTGAAAAAATATTTTCCTTAAATTTTGAAAGAAAATTATTTTCTTTAAATTAATTTTCTTTAAATTTGAGGAAGATAAATTGATTTGAATAATATTTTCTAAAATATTTGACCCAACTAAACATAAAAAGATTGAAAGATATTTATATTTTTCTTCATACCAAACGCACCCTTAAAAGTACATAAAAGCATTATAATTAAAGATAAATTTGTTCAAATTTTAAAATTCAAAAGATTATAAAATAAATTACGAATGGGAGGGAGAATGCAATTTTGGTATTTGTGGTTCTCTTATTTTGAATTTTTTTAATTTTGTGTTGTGATTTGTTGCAGTCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTCTTGTAATTAATTATTAAGGTCTACCTTTTTATTTTTGCTTTAATTTGTAGTACATATACCAATGTATAAGAATTGTATAATGTGAATAAGTTCTTTATGAACACTATTATTAGGAGTTATATTGTTGTAATAATCTTTTTGATTTGAATCATTGAACTTCTATTTCATCTATTTTTTGGTTGTCTACCTTAGAAATTAGA</genome_strand>
        <mrna_strand>CATATCCCTCTCAAGGTCAAG...........................................................................................................................................................................................................GGTATTATCAAGGTGGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTCCTCCTCCTCCTCAGAAAAATAGAGGTTTTCTTGAAGGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTCTTGTAATTAATTATTAAGGTC-ACCTTTTTATTTTTGCTTTAATTTGTAGTACATATACCAATGTATAAGAATTGTATAATGTGAATAAGTTCTTTATGAACACTATTATTAGGAGTTATATTGTTGTAATA............................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712902" ref_strand="+" ref_description="SGN-E712902 [FB06AE11]">
      <seq>attataccaagtttctcttctttaattttctctgttgagttactaattttcaaaacatgatgaatgaaccaccaaaatatggttatccatatccctctcaaggtcaagggtattatcaaggtggtcctcctcctgtgatggcaccaccaacatatgctgctcctcctcctcctcagaaaaatagaggttttcttgaaggatgtctagcagctctgtgttgttgctgcctgttagatgagtgttgctgtgatccctctgtaatctgtgtcttgtaattaattattaaggtcacctttttatttttgctttaatttgtagtacatataccaatgtataagaattgtataatgtgaataagttctttatgaacactattattaggagttatattgttgtaataatctttttgatttgaatcattgaacttctatttcatctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="14924" stop="12650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14624" g_stop="14517" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14516" i_stop="14314" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14313" g_stop="14220" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="202" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14219" i_stop="13188" i_length="1032">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13187" g_stop="12951" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="438" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="461"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E712902" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14624" e_stop="14517"/>
          <exon e_start="14313" e_stop="14220"/>
          <exon e_start="13187" e_stop="12951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATACCAAGTTTCTCTTCTTTAATTTTCTCTGTTGAGTTACTAATTTTCAAAACATGATGAATGAACCACCAAAATATGGTTATCCATATCCCTCTCAAGGTCAAGGTAAAAATAACACATGATTCATTTTTCAAATTTATTTTGTGTATGCTGGCTAGATTATGGTTTGTTTATTAGAAACAATCTTTCTGATATTAAGAAATTAATAAAATTTGCCTAGATTTTTGTTTTTTTTGAAAAAATAATAATTTGTTAAGCATATCAATATTTTCTTTGATTAATTTTGTTTGTGAAATATTTATAAACAGGGTATTATCAAGGTGGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTCCTCCTCCTCCTCAGAAAAATAGAGGTTTTCTTGAAGGATGGTAAGCAATTTGATTTACATAAATTAAACTCTTTTCTGGCTCAATTTATGTATCACAATTTAAATTTTTATAGTCAACCAATTTAAGTTTGGTCATGATTTTGGTACGAAATCTTTAAATTTTCAAAAATATAACTCACTATAATAGACAATTTGAAATATTTAGAGTGTGTTTGGTATCAAGGAAAGTGTTTTCCTAGAAAACAAGTGGATATTTGACTTGTTTTCTTATGTTTGGTGGACGAGTAGAAAATATTTCTGAAAAAATATGTTATTGTTTGTTTTTTGAATGAAAAATGTTTTTGAGAAATCTTTTTTATTTTTTACTAGAGACGAAAATAATTTTTGAAGTTGAATTTCTTTTGCCAAATTCAAAACTTTTGCGTGGTAGGGGTGGGGGGTTCGAAGGTAGGAATGAAAAAATTAAATTTTAAAGTTGATTTTATTTTTTAAAAATAATATTAATTTTTTTTTATTTGTGTGTGGGTGGGGGGGGGGGGAAGTGGTAGTGGGGTTGGGCGGAGGGTTGTTGTAAAAAATGAAATCTTAAAGTTGAAAATATTTTTTAAAAAATAAACTTATTTTAGGGGTAGGGGGTGGGTTGGGGGCTAATAGGTGTGGATGCGGGGTTGGAAGGGGTGAGTGGTGCGGGAATGGGGGGCTAGTATGGTTGGGTGGGTAGGGGGAGGTTGAAATGTATTTTGAAAAAATATTTTCCTTAAATTTTGAAAGAAAATTATTTTCTTTAAATTAATTTTCTTTAAATTTGAGGAAGATAAATTGATTTGAATAATATTTTCTAAAATATTTGACCCAACTAAACATAAAAAGATTGAAAGATATTTATATTTTTCTTCATACCAAACGCACCCTTAAAAGTACATAAAAGCATTATAATTAAAGATAAATTTGTTCAAATTTTAAAATTCAAAAGATTATAAAATAAATTACGAATGGGAGGGAGAATGCAATTTTGGTATTTGTGGTTCTCTTATTTTGAATTTTTTTAATTTTGTGTTGTGATTTGTTGCAGTCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTCTTGTAATTAATTATTAAGGTCTACCTTTTTATTTTTGCTTTAATTTGTAGTACATATACCAATGTATAAGAATTGTATAATGTGAATAAGTTCTTTATGAACACTATTATTAGGAGTTATATTGTTGTAATAATCTTTTTGATTTGAATCATTGAACTTCTATTTCATCT</genome_strand>
        <mrna_strand>ATTATACCAAGTTTCTCTTCTTTAATTTTCTCTGTTGAGTTACTAATTTTCAAAACATGATGAATGAACCACCAAAATATGGTTATCCATATCCCTCTCAAGGTCAAG...........................................................................................................................................................................................................GGTATTATCAAGGTGGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTCCTCCTCCTCCTCAGAAAAATAGAGGTTTTCTTGAAGGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTCTTGTAATTAATTATTAAGGTC-ACCTTTTTATTTTTGCTTTAATTTGTAGTACATATACCAATGTATAAGAATTGTATAATGTGAATAAGTTCTTTATGAACACTATTATTAGGAGTTATATTGTTGTAATAATCTTTTTGATTTGAATCATTGAACTTCTATTTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612258" ref_strand="+" ref_description="SGN-E612258 [62018]">
      <seq>accattatatcaagtttctcttcttttctctattgagttactactttttaaaacatgatgaatgaaccaccaaaatatggttatccatatccctctcaaggtcaagggtattatcaaggtcctcctcctgtgatggcaccaccaacatatgctgctgctcctccacctcagaataatagaggttttcttgaaggatgtctagcagctctgtgttgttgctgcctgttagatgagtgttgctgtgatccctctgtaatctgtgtgttgtaattaattaagttcacttcttctttatgctttaatttgtagtacatataccaatatataagaattgtaatgtaaataagttctttatgaacatcactattattgggagttatattgtagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="14907" stop="12709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14627" g_stop="14517" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14516" i_stop="14314" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14313" g_stop="14220" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="197" r_length="91" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14219" i_stop="13188" i_length="1032">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13187" g_stop="12998" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="383" r_length="186" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="405"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E612258" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14627" e_stop="14517"/>
          <exon e_start="14313" e_stop="14220"/>
          <exon e_start="13187" e_stop="12998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATTATACCAAGTTTCTCTTCTTTAATTTTCTCTGTTGAGTTACTAATTTTCAAAACATGATGAATGAACCACCAAAATATGGTTATCCATATCCCTCTCAAGGTCAAGGTAAAAATAACACATGATTCATTTTTCAAATTTATTTTGTGTATGCTGGCTAGATTATGGTTTGTTTATTAGAAACAATCTTTCTGATATTAAGAAATTAATAAAATTTGCCTAGATTTTTGTTTTTTTTGAAAAAATAATAATTTGTTAAGCATATCAATATTTTCTTTGATTAATTTTGTTTGTGAAATATTTATAAACAGGGTATTATCAAGGTGGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTCCTCCTCCTCCTCAGAAAAATAGAGGTTTTCTTGAAGGATGGTAAGCAATTTGATTTACATAAATTAAACTCTTTTCTGGCTCAATTTATGTATCACAATTTAAATTTTTATAGTCAACCAATTTAAGTTTGGTCATGATTTTGGTACGAAATCTTTAAATTTTCAAAAATATAACTCACTATAATAGACAATTTGAAATATTTAGAGTGTGTTTGGTATCAAGGAAAGTGTTTTCCTAGAAAACAAGTGGATATTTGACTTGTTTTCTTATGTTTGGTGGACGAGTAGAAAATATTTCTGAAAAAATATGTTATTGTTTGTTTTTTGAATGAAAAATGTTTTTGAGAAATCTTTTTTATTTTTTACTAGAGACGAAAATAATTTTTGAAGTTGAATTTCTTTTGCCAAATTCAAAACTTTTGCGTGGTAGGGGTGGGGGGTTCGAAGGTAGGAATGAAAAAATTAAATTTTAAAGTTGATTTTATTTTTTAAAAATAATATTAATTTTTTTTTATTTGTGTGTGGGTGGGGGGGGGGGGAAGTGGTAGTGGGGTTGGGCGGAGGGTTGTTGTAAAAAATGAAATCTTAAAGTTGAAAATATTTTTTAAAAAATAAACTTATTTTAGGGGTAGGGGGTGGGTTGGGGGCTAATAGGTGTGGATGCGGGGTTGGAAGGGGTGAGTGGTGCGGGAATGGGGGGCTAGTATGGTTGGGTGGGTAGGGGGAGGTTGAAATGTATTTTGAAAAAATATTTTCCTTAAATTTTGAAAGAAAATTATTTTCTTTAAATTAATTTTCTTTAAATTTGAGGAAGATAAATTGATTTGAATAATATTTTCTAAAATATTTGACCCAACTAAACATAAAAAGATTGAAAGATATTTATATTTTTCTTCATACCAAACGCACCCTTAAAAGTACATAAAAGCATTATAATTAAAGATAAATTTGTTCAAATTTTAAAATTCAAAAGATTATAAAATAAATTACGAATGGGAGGGAGAATGCAATTTTGGTATTTGTGGTTCTCTTATTTTGAATTTTTTTAATTTTGTGTTGTGATTTGTTGCAGTCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTCTTGTAATTAATTATTAAGGTCTACCTTTTTATTTTTGCTTTAATTTGTAGTACATATACCAATGTATAAGAATTGTATAATGTGAATAAGTTCTTTATG-A-A-CACTATTATTAGGAGTTATATT</genome_strand>
        <mrna_strand>ACCATTATATCAAGTTTCTCTTC-----TTTTCTCTATTGAGTTACTACTTTTTAAAACATGATGAATGAACCACCAAAATATGGTTATCCATATCCCTCTCAAGGTCAAG...........................................................................................................................................................................................................GGTATTATCAA---GGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTGCTCCTCCACCTCAGAATAATAGAGGTTTTCTTGAAGGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTGTTGTAATT-A--ATTAAGTTC-A-CTTCTTCTTTATGCTTTAATTTGTAGTACATATACCAATATATAAGAATTG--TAATGTAAATAAGTTCTTTATGAACATCACTATTATTGGGAGTTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203053" ref_strand="+" ref_description="SGN-E203053 [cLEB-3-I16]">
      <seq>gcacgagccaagtttctcttctttaattttctctgttgagttactaattttcaaaacatgatgaatgaaccaccaaaatatggttatccatatccctctcaaggtcaagggtattatcaaggtggtcctcctcctgtgatggcaccaccaacatatgctgctcctcctcctcctcagaaaaatagaggttttcttgaaggatgtctagcagctctgtgttgttgctgcctgttagatgagtgttgctgtgatccctctgtaatctgtgtcttgtaattaattattaaggtcacctttttatttttgctttaatttgtagtacatataccaatgtataagaattgtataatgtgaataagttctttatgaacacttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="14918" stop="12712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14626" g_stop="14517" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14516" i_stop="14314" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14313" g_stop="14220" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="203" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14219" i_stop="13188" i_length="1032">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13187" g_stop="13016" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="374" r_length="171" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="395"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E203053" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14626" e_stop="14517"/>
          <exon e_start="14313" e_stop="14220"/>
          <exon e_start="13187" e_stop="13016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTATACCAAGTTTCTCTTCTTTAATTTTCTCTGTTGAGTTACTAATTTTCAAAACATGATGAATGAACCACCAAAATATGGTTATCCATATCCCTCTCAAGGTCAAGGTAAAAATAACACATGATTCATTTTTCAAATTTATTTTGTGTATGCTGGCTAGATTATGGTTTGTTTATTAGAAACAATCTTTCTGATATTAAGAAATTAATAAAATTTGCCTAGATTTTTGTTTTTTTTGAAAAAATAATAATTTGTTAAGCATATCAATATTTTCTTTGATTAATTTTGTTTGTGAAATATTTATAAACAGGGTATTATCAAGGTGGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTCCTCCTCCTCCTCAGAAAAATAGAGGTTTTCTTGAAGGATGGTAAGCAATTTGATTTACATAAATTAAACTCTTTTCTGGCTCAATTTATGTATCACAATTTAAATTTTTATAGTCAACCAATTTAAGTTTGGTCATGATTTTGGTACGAAATCTTTAAATTTTCAAAAATATAACTCACTATAATAGACAATTTGAAATATTTAGAGTGTGTTTGGTATCAAGGAAAGTGTTTTCCTAGAAAACAAGTGGATATTTGACTTGTTTTCTTATGTTTGGTGGACGAGTAGAAAATATTTCTGAAAAAATATGTTATTGTTTGTTTTTTGAATGAAAAATGTTTTTGAGAAATCTTTTTTATTTTTTACTAGAGACGAAAATAATTTTTGAAGTTGAATTTCTTTTGCCAAATTCAAAACTTTTGCGTGGTAGGGGTGGGGGGTTCGAAGGTAGGAATGAAAAAATTAAATTTTAAAGTTGATTTTATTTTTTAAAAATAATATTAATTTTTTTTTATTTGTGTGTGGGTGGGGGGGGGGGGAAGTGGTAGTGGGGTTGGGCGGAGGGTTGTTGTAAAAAATGAAATCTTAAAGTTGAAAATATTTTTTAAAAAATAAACTTATTTTAGGGGTAGGGGGTGGGTTGGGGGCTAATAGGTGTGGATGCGGGGTTGGAAGGGGTGAGTGGTGCGGGAATGGGGGGCTAGTATGGTTGGGTGGGTAGGGGGAGGTTGAAATGTATTTTGAAAAAATATTTTCCTTAAATTTTGAAAGAAAATTATTTTCTTTAAATTAATTTTCTTTAAATTTGAGGAAGATAAATTGATTTGAATAATATTTTCTAAAATATTTGACCCAACTAAACATAAAAAGATTGAAAGATATTTATATTTTTCTTCATACCAAACGCACCCTTAAAAGTACATAAAAGCATTATAATTAAAGATAAATTTGTTCAAATTTTAAAATTCAAAAGATTATAAAATAAATTACGAATGGGAGGGAGAATGCAATTTTGGTATTTGTGGTTCTCTTATTTTGAATTTTTTTAATTTTGTGTTGTGATTTGTTGCAGTCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTCTTGTAATTAATTATTAAGGTCTACCTTTTTATTTTTGCTTTAATTTGTAGTACATATACCAATGTATAAGAATTGTATAATGTGAATAAGTTCTTTATGAACACT</genome_strand>
        <mrna_strand>GCACGA-GCCAAGTTTCTCTTCTTTAATTTTCTCTGTTGAGTTACTAATTTTCAAAACATGATGAATGAACCACCAAAATATGGTTATCCATATCCCTCTCAAGGTCAAG...........................................................................................................................................................................................................GGTATTATCAAGGTGGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTCCTCCTCCTCCTCAGAAAAATAGAGGTTTTCTTGAAGGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTCTTGTAATTAATTATTAAGGTC-ACCTTTTTATTTTTGCTTTAATTTGTAGTACATATACCAATGTATAAGAATTGTATAATGTGAATAAGTTCTTTATGAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277305" ref_strand="-" ref_description="SGN-E277305 [cLEL-3-J20]">
      <seq>taattttcaatacatgatgaatgaaccaccaaaatatggttatccatatccctctcaaggtcaagggtattatcaaggtggtcctcctcctgtgatggcaccaccaacatatgctgctcctcctcctcctcagaaaaatagaggttttcttgaaggatgtctagcagctctgtgttgttgctgcctgttagatgagtgttgctgtgatccctctgtaatctgtgtcttgtaattaattattaaggtcacctttttatttttgctttaatttgtagtacatataccaatgtataggaattgtataatgtgaataaatttcctatgaacactaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="14881" stop="12715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14581" g_stop="14517" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14516" i_stop="14314" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14313" g_stop="14220" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="159" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14219" i_stop="13188" i_length="1032">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13187" g_stop="13016" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="330" r_length="171" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="331" polyA_stop="350"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E277305" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277305" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14581" e_stop="14517"/>
          <exon e_start="14313" e_stop="14220"/>
          <exon e_start="13187" e_stop="13016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTCAAAACATGATGAATGAACCACCAAAATATGGTTATCCATATCCCTCTCAAGGTCAAGGTAAAAATAACACATGATTCATTTTTCAAATTTATTTTGTGTATGCTGGCTAGATTATGGTTTGTTTATTAGAAACAATCTTTCTGATATTAAGAAATTAATAAAATTTGCCTAGATTTTTGTTTTTTTTGAAAAAATAATAATTTGTTAAGCATATCAATATTTTCTTTGATTAATTTTGTTTGTGAAATATTTATAAACAGGGTATTATCAAGGTGGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTCCTCCTCCTCCTCAGAAAAATAGAGGTTTTCTTGAAGGATGGTAAGCAATTTGATTTACATAAATTAAACTCTTTTCTGGCTCAATTTATGTATCACAATTTAAATTTTTATAGTCAACCAATTTAAGTTTGGTCATGATTTTGGTACGAAATCTTTAAATTTTCAAAAATATAACTCACTATAATAGACAATTTGAAATATTTAGAGTGTGTTTGGTATCAAGGAAAGTGTTTTCCTAGAAAACAAGTGGATATTTGACTTGTTTTCTTATGTTTGGTGGACGAGTAGAAAATATTTCTGAAAAAATATGTTATTGTTTGTTTTTTGAATGAAAAATGTTTTTGAGAAATCTTTTTTATTTTTTACTAGAGACGAAAATAATTTTTGAAGTTGAATTTCTTTTGCCAAATTCAAAACTTTTGCGTGGTAGGGGTGGGGGGTTCGAAGGTAGGAATGAAAAAATTAAATTTTAAAGTTGATTTTATTTTTTAAAAATAATATTAATTTTTTTTTATTTGTGTGTGGGTGGGGGGGGGGGGAAGTGGTAGTGGGGTTGGGCGGAGGGTTGTTGTAAAAAATGAAATCTTAAAGTTGAAAATATTTTTTAAAAAATAAACTTATTTTAGGGGTAGGGGGTGGGTTGGGGGCTAATAGGTGTGGATGCGGGGTTGGAAGGGGTGAGTGGTGCGGGAATGGGGGGCTAGTATGGTTGGGTGGGTAGGGGGAGGTTGAAATGTATTTTGAAAAAATATTTTCCTTAAATTTTGAAAGAAAATTATTTTCTTTAAATTAATTTTCTTTAAATTTGAGGAAGATAAATTGATTTGAATAATATTTTCTAAAATATTTGACCCAACTAAACATAAAAAGATTGAAAGATATTTATATTTTTCTTCATACCAAACGCACCCTTAAAAGTACATAAAAGCATTATAATTAAAGATAAATTTGTTCAAATTTTAAAATTCAAAAGATTATAAAATAAATTACGAATGGGAGGGAGAATGCAATTTTGGTATTTGTGGTTCTCTTATTTTGAATTTTTTTAATTTTGTGTTGTGATTTGTTGCAGTCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTCTTGTAATTAATTATTAAGGTCTACCTTTTTATTTTTGCTTTAATTTGTAGTACATATACCAATGTATAAGAATTGTATAATGTGAATAAGTTCTTTATGAACACT</genome_strand>
        <mrna_strand>TAATTTTCAATACATGATGAATGAACCACCAAAATATGGTTATCCATATCCCTCTCAAGGTCAAG...........................................................................................................................................................................................................GGTATTATCAAGGTGGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTCCTCCTCCTCCTCAGAAAAATAGAGGTTTTCTTGAAGGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTCTTGTAATTAATTATTAAGGTC-ACCTTTTTATTTTTGCTTTAATTTGTAGTACATATACCAATGTATAGGAATTGTATAATGTGAATAAATTTCCTATGAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277304" ref_strand="-" ref_description="SGN-E277304 [cLEL-3-J18](-)">
      <seq>gcacgagccaagtttctcttctttaattttctctgttgagttactaattttcaggacatgatgaatgaaccaccaaaacctggttatccatatccctctcaaggtcaagggtattatcaaggtggtcctcctcctgtgatggcaccaccaacatatgctgctcctcctcctcctcagaaaaatagaggttttcttgaaggatgtctagcagctctgtgttgttgctgcctgttagatgagtgttgctgtgatccctctgtaatctgtgtcttgtaattaattattaaggtcacctttttatttttgctttaatttgtagtacatataccaatgtataagaattgtataatgtgaataagttctttatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="14918" stop="12718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14626" g_stop="14517" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14516" i_stop="14314" i_length="203">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14313" g_stop="14220" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="203" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14219" i_stop="13188" i_length="1032">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13187" g_stop="13018" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="372" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E277304" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277304" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14626" e_stop="14517"/>
          <exon e_start="14313" e_stop="14220"/>
          <exon e_start="13187" e_stop="13018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTATACCAAGTTTCTCTTCTTTAATTTTCTCTGTTGAGTTACTAATTTTCAAAACATGATGAATGAACCACCAAAATATGGTTATCCATATCCCTCTCAAGGTCAAGGTAAAAATAACACATGATTCATTTTTCAAATTTATTTTGTGTATGCTGGCTAGATTATGGTTTGTTTATTAGAAACAATCTTTCTGATATTAAGAAATTAATAAAATTTGCCTAGATTTTTGTTTTTTTTGAAAAAATAATAATTTGTTAAGCATATCAATATTTTCTTTGATTAATTTTGTTTGTGAAATATTTATAAACAGGGTATTATCAAGGTGGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTCCTCCTCCTCCTCAGAAAAATAGAGGTTTTCTTGAAGGATGGTAAGCAATTTGATTTACATAAATTAAACTCTTTTCTGGCTCAATTTATGTATCACAATTTAAATTTTTATAGTCAACCAATTTAAGTTTGGTCATGATTTTGGTACGAAATCTTTAAATTTTCAAAAATATAACTCACTATAATAGACAATTTGAAATATTTAGAGTGTGTTTGGTATCAAGGAAAGTGTTTTCCTAGAAAACAAGTGGATATTTGACTTGTTTTCTTATGTTTGGTGGACGAGTAGAAAATATTTCTGAAAAAATATGTTATTGTTTGTTTTTTGAATGAAAAATGTTTTTGAGAAATCTTTTTTATTTTTTACTAGAGACGAAAATAATTTTTGAAGTTGAATTTCTTTTGCCAAATTCAAAACTTTTGCGTGGTAGGGGTGGGGGGTTCGAAGGTAGGAATGAAAAAATTAAATTTTAAAGTTGATTTTATTTTTTAAAAATAATATTAATTTTTTTTTATTTGTGTGTGGGTGGGGGGGGGGGGAAGTGGTAGTGGGGTTGGGCGGAGGGTTGTTGTAAAAAATGAAATCTTAAAGTTGAAAATATTTTTTAAAAAATAAACTTATTTTAGGGGTAGGGGGTGGGTTGGGGGCTAATAGGTGTGGATGCGGGGTTGGAAGGGGTGAGTGGTGCGGGAATGGGGGGCTAGTATGGTTGGGTGGGTAGGGGGAGGTTGAAATGTATTTTGAAAAAATATTTTCCTTAAATTTTGAAAGAAAATTATTTTCTTTAAATTAATTTTCTTTAAATTTGAGGAAGATAAATTGATTTGAATAATATTTTCTAAAATATTTGACCCAACTAAACATAAAAAGATTGAAAGATATTTATATTTTTCTTCATACCAAACGCACCCTTAAAAGTACATAAAAGCATTATAATTAAAGATAAATTTGTTCAAATTTTAAAATTCAAAAGATTATAAAATAAATTACGAATGGGAGGGAGAATGCAATTTTGGTATTTGTGGTTCTCTTATTTTGAATTTTTTTAATTTTGTGTTGTGATTTGTTGCAGTCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTCTTGTAATTAATTATTAAGGTCTACCTTTTTATTTTTGCTTTAATTTGTAGTACATATACCAATGTATAAGAATTGTATAATGTGAATAAGTTCTTTATGAACA</genome_strand>
        <mrna_strand>GCACGA-GCCAAGTTTCTCTTCTTTAATTTTCTCTGTTGAGTTACTAATTTTCAGGACATGATGAATGAACCACCAAAACCTGGTTATCCATATCCCTCTCAAGGTCAAG...........................................................................................................................................................................................................GGTATTATCAAGGTGGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTCCTCCTCCTCCTCAGAAAAATAGAGGTTTTCTTGAAGGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTCTTGTAATTAATTATTAAGGTC-ACCTTTTTATTTTTGCTTTAATTTGTAGTACATATACCAATGTATAAGAATTGTATAATGTGAATAAGTTCTTTATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="17282" stop="16387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16982" g_stop="16661" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16982" e_stop="16661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTATATAATTCGCAATTGTATAATTCGTTGACCTTTTCCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="17282" stop="16387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16982" g_stop="16692" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16982" e_stop="16692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTATATAATTCGCAATTGTATAATTCGTTGACCTTTTCCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="17282" stop="16532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16982" g_stop="16832" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>151</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16982" e_stop="16832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTATATAATTCGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713077" ref_strand="+" ref_description="SGN-E713077 [FB06CF07]">
      <seq>ccaaaggtggctggttattcggaaggatatggcatggtaagacccgcaactaccatgggagttggtgtagcagatgcaggtgggtacacacagatggcgtacgatggtggagtaggaaggcagatgtactatcctccccaaggtggtgtcatagcgccaccacaacaacaaccgcagtaccacgcaatgccgccacaagctgttgttggctccgatatgagacctcaagaagctgctaaagtcgtacctgtgaaacctacacaaacatcagtgtgattgatctgtgctttcctataaaaatgatcaaaataataaaataaaagtagtaggggagtttatagtataatcctgtttatcttgagaagatttatgtgccatatcgtgtacattttgagtggagattgatttctatgcttcttcaagattatatcttcctttatatcatgcaatgcattttgtgattttccattttttaacttgaagaaaaagtatccttttttcttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="24531" stop="23426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24231" g_stop="23727" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="518"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E713077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24231" e_stop="23727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCGCAACTACCATGGGAGTTGGTGTAGCAGATGCAGGTGGGTACACACAGATGGCGTACGATGGTGGAGTAGGAAGGCAGATGTACTATCCTCCCCAAGGTGGTGTCATAGCGCCACCACAACAACAACCGCAGTACCACGCAATGCCGCCACAAGCTGTTGTTGGCTCCGATATGAGACCTCAAGAAGCTGCTAAAGTCGTACCTGTGAAACCTACACAAACATCAGTGTGATTGATCTGTGCTTTCCTATAAAAATGATCAAAATAATAAAATAAAAGTAGTAGGGGAGTTTATAGTATAATCCTGTTTATCTTGAGAAGATTTATGTGCCATATCGTGTACATTTTGAGTGGAGATTGATTTCTATGCTTCTTCAAGATTATATCTTCCTTTATATCATGCAATGCATTTTGTGATTTTCCATTTTTTAACTTGAAGAAAAAGTATCCTTTTTTCTTGA</genome_strand>
        <mrna_strand>CCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCGCAACTACCATGGGAGTTGGTGTAGCAGATGCAGGTGGGTACACACAGATGGCGTACGATGGTGGAGTAGGAAGGCAGATGTACTATCCTCCCCAAGGTGGTGTCATAGCGCCACCACAACAACAACCGCAGTACCACGCAATGCCGCCACAAGCTGTTGTTGGCTCCGATATGAGACCTCAAGAAGCTGCTAAAGTCGTACCTGTGAAACCTACACAAACATCAGTGTGATTGATCTGTGCTTTCCTATAAAAATGATCAAAATAATAAAATAAAAGTAGTAGGGGAGTTTATAGTATAATCCTGTTTATCTTGAGAAGATTTATGTGCCATATCGTGTACATTTTGAGTGGAGATTGATTTCTATGCTTCTTCAAGATTATATCTTCCTTTATATCATGCAATGCATTTTGTGATTTTCCATTTTTTAACTTGAAGAAAAAGTATCCTTTTTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257686" ref_strand="+" ref_description="SGN-E257686 [cLEG-39-G10]">
      <seq>cacaccagcaccaacaccaacacccacaatttgtcaggccaatggccggaccaccgggtcaagggtactacgccgtacagaggatgccacaggagccttacagggatcaaccagtttacaatgtcatgcctagtttaccacaagcagtaccgacagttgcagcggcaccaccaactttacaatctcaggtacctccaaaggtggctggttattcggaaggatatggcatggtaagacccgcaactaccatgggagttggtgtagcagatgcaggtgggtacacacagatggcgtacgatggtggagtaggaaggcagatgtactatcctccccaaggtggtgtcatagcgccaccacaacaacaaccgcagtaccacgcaatgccgccacaagctgttgttggctccgatatgagacctcaagaagctgctaaagtcgtacctgtgaaacctacacaaacatcagtgtgattgatctgtgctttcctataaaaatgatcaaaataataaaataaaagtagtaggggagtttatagtataatcctgtttatcttgagaagatttatgtgccatatcgtgtacattttgagtggagattgatttctatgcttcttcaagattatatcttcctttatatcatgcaatgcattttgtgattttccattttttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="24725" stop="23456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24425" g_stop="23754" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E257686" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24425" e_stop="23754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCAGGTACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCGCAACTACCATGGGAGTTGGTGTAGCAGATGCAGGTGGGTACACACAGATGGCGTACGATGGTGGAGTAGGAAGGCAGATGTACTATCCTCCCCAAGGTGGTGTCATAGCGCCACCACAACAACAACCGCAGTACCACGCAATGCCGCCACAAGCTGTTGTTGGCTCCGATATGAGACCTCAAGAAGCTGCTAAAGTCGTACCTGTGAAACCTACACAAACATCAGTGTGATTGATCTGTGCTTTCCTATAAAAATGATCAAAATAATAAAATAAAAGTAGTAGGGGAGTTTATAGTATAATCCTGTTTATCTTGAGAAGATTTATGTGCCATATCGTGTACATTTTGAGTGGAGATTGATTTCTATGCTTCTTCAAGATTATATCTTCCTTTATATCATGCAATGCATTTTGTGATTTTCCATTTTTTAACT</genome_strand>
        <mrna_strand>CACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCAGGTACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCGCAACTACCATGGGAGTTGGTGTAGCAGATGCAGGTGGGTACACACAGATGGCGTACGATGGTGGAGTAGGAAGGCAGATGTACTATCCTCCCCAAGGTGGTGTCATAGCGCCACCACAACAACAACCGCAGTACCACGCAATGCCGCCACAAGCTGTTGTTGGCTCCGATATGAGACCTCAAGAAGCTGCTAAAGTCGTACCTGTGAAACCTACACAAACATCAGTGTGATTGATCTGTGCTTTCCTATAAAAATGATCAAAATAATAAAATAAAAGTAGTAGGGGAGTTTATAGTATAATCCTGTTTATCTTGAGAAGATTTATGTGCCATATCGTGTACATTTTGAGTGGAGATTGATTTCTATGCTTCTTCAAGATTATATCTTCCTTTATATCATGCAATGCATTTTGTGATTTTCCATTTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368441" ref_strand="+" ref_description="SGN-E368441 [TUS-23-J3](-)">
      <seq>tcaggccaatggccggaccaccggggtcaagggttctacgccgtacagaggatgccacaggagccttacagggatcaaccagtttacaatgtcatgcctagtttaccacaagcagtaccgacagttgcagcggcaccaccaactttacaatctcaggtacctccaaaggtggctggttattcggaaggatatggcatggtaagacccgcaactaccatgggagttggtgtagcagatgcaggtgggtacacacagatggcgtacgatggtggagtaggaaggcagatgtactatcctccccaaggtggtgtcatagcgccaccacaacaacaaccgcagtaccacgcaatgccgccacaagctgttgttggctccgatatgagacctcaagaagctgctaaagtcgtacctgtgaaacctacacaaacatcagtgtgattgatctgtgctttcctataaaaatgatcaaaataataaaataaaagtagtaggggagtttatagtataatcctgtttatcttgagaagatttatgtgccatatcgtgtacattttgagtggagattgatttctatgcttcttcaagattatatcttcctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="24692" stop="23491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24392" g_stop="23794" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="613"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E368441" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24392" e_stop="23794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCCAATGGCCGGACCACC-GGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCAGGTACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCGCAACTACCATGGGAGTTGGTGTAGCAGATGCAGGTGGGTACACACAGATGGCGTACGATGGTGGAGTAGGAAGGCAGATGTACTATCCTCCCCAAGGTGGTGTCATAGCGCCACCACAACAACAACCGCAGTACCACGCAATGCCGCCACAAGCTGTTGTTGGCTCCGATATGAGACCTCAAGAAGCTGCTAAAGTCGTACCTGTGAAACCTACACAAACATCAGTGTGATTGATCTGTGCTTTCCTATAAAAATGATCAAAATAATAAAATAAAAGTAGTAGGGGAGTTTATAGTATAATCCTGTTTATCTTGAGAAGATTTATGTGCCATATCGTGTACATTTTGAGTGGAGATTGATTTCTATGCTTCTTCAAGATTATATCTTCCTTT</genome_strand>
        <mrna_strand>TCAGGCCAATGGCCGGACCACCGGGGTCAAGGGTTCTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCAGGTACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCGCAACTACCATGGGAGTTGGTGTAGCAGATGCAGGTGGGTACACACAGATGGCGTACGATGGTGGAGTAGGAAGGCAGATGTACTATCCTCCCCAAGGTGGTGTCATAGCGCCACCACAACAACAACCGCAGTACCACGCAATGCCGCCACAAGCTGTTGTTGGCTCCGATATGAGACCTCAAGAAGCTGCTAAAGTCGTACCTGTGAAACCTACACAAACATCAGTGTGATTGATCTGTGCTTTCCTATAAAAATGATCAAAATAATAAAATAAAAGTAGTAGGGGAGTTTATAGTATAATCCTGTTTATCTTGAGAAGATTTATGTGCCATATCGTGTACATTTTGAGTGGAGATTGATTTCTATGCTTCTTCAAGATTATATCTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713018" ref_strand="+" ref_description="SGN-E713018 [FB06CA03]">
      <seq>tcccggaggagtactgccggcgagcagtctcggtatggaacaaccagtttacatgattcatcaagcaccggccggagcatatcaaccacaccagcaccaacaccaacacccacaatttgtcaggccaatggccggaccaccgggtcaagggtactacgccgtacagaggatgccacaggagccttacagggatcaaccagtttacaatgtcatgcctagtttaccacaagcagtaccgacagttgcagcggcaccaccaactttacaatctcaggtacctccaaaggtggctggttattcggaaggatatggcatggtaagacccgcaactaccatgggagttggtgtagcagatgcaggtgggtacacacagatggcgtacgatggtggagtaggaaggcagatgtactatcctccccaaggtggtgtcatagcgccaccacaacaacaaccgcagtaccacgcaatgccgccacaagctgttgttggctccgatatgagacctcaagaagctgctaaagtcgtacctgtgaaacctacacaaacatcagtgtgattgatctgtgctttcctataaaaatgatcaaaataataaaataaaagtagtaggggagtttatagtataatcctgtttatcttgagaagatttatgtgccatatcgtgtacattttgagtggagattgatttctatgcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="24811" stop="23513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24511" g_stop="23813" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E713018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24511" e_stop="23813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCGGAGGAGTACTGCCGGCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCGGCCGGAGCATATCAACCACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCAGGTACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCGCAACTACCATGGGAGTTGGTGTAGCAGATGCAGGTGGGTACACACAGATGGCGTACGATGGTGGAGTAGGAAGGCAGATGTACTATCCTCCCCAAGGTGGTGTCATAGCGCCACCACAACAACAACCGCAGTACCACGCAATGCCGCCACAAGCTGTTGTTGGCTCCGATATGAGACCTCAAGAAGCTGCTAAAGTCGTACCTGTGAAACCTACACAAACATCAGTGTGATTGATCTGTGCTTTCCTATAAAAATGATCAAAATAATAAAATAAAAGTAGTAGGGGAGTTTATAGTATAATCCTGTTTATCTTGAGAAGATTTATGTGCCATATCGTGTACATTTTGAGTGGAGATTGATTTCTATGCTTCTT</genome_strand>
        <mrna_strand>TCCCGGAGGAGTACTGCCGGCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCGGCCGGAGCATATCAACCACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCAGGTACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCGCAACTACCATGGGAGTTGGTGTAGCAGATGCAGGTGGGTACACACAGATGGCGTACGATGGTGGAGTAGGAAGGCAGATGTACTATCCTCCCCAAGGTGGTGTCATAGCGCCACCACAACAACAACCGCAGTACCACGCAATGCCGCCACAAGCTGTTGTTGGCTCCGATATGAGACCTCAAGAAGCTGCTAAAGTCGTACCTGTGAAACCTACACAAACATCAGTGTGATTGATCTGTGCTTTCCTATAAAAATGATCAAAATAATAAAATAAAAGTAGTAGGGGAGTTTATAGTATAATCCTGTTTATCTTGAGAAGATTTATGTGCCATATCGTGTACATTTTGAGTGGAGATTGATTTCTATGCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257760" ref_strand="+" ref_description="SGN-E257760 [cLEG-39-H20]">
      <seq>cacaccagcaccaacaccaacacccacaatttgtcaggccaatggccggaccaccgggtcaagggtactacgccgtacagaggatgccacaggagccttacagggatcaaccagtttacaatgtcatgcctagtttaccacaagcagtaccgacagttgcagcggcaccaccaactttacaatctcaggtacctccaaaggtggctggttattcggaaggatatggcatggtaagacccgcaactaccatgggagttggtgtagcagatgcaggtgggtacacacagatggcgtacgatggtggagtaggaaggcagatgtactatcctccccaaggtggtgtcatagcgccaccacaacaacaaccgcagtaccacgcaatgccgccacaagctgttgttggctccgatatgagacctcaagaagctgctaaagtcgtacctgtgaaacctacacaaacatcagtgtgattgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="24725" stop="23649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24425" g_stop="23949" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E257760" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24425" e_stop="23949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCAGGTACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCGCAACTACCATGGGAGTTGGTGTAGCAGATGCAGGTGGGTACACACAGATGGCGTACGATGGTGGAGTAGGAAGGCAGATGTACTATCCTCCCCAAGGTGGTGTCATAGCGCCACCACAACAACAACCGCAGTACCACGCAATGCCGCCACAAGCTGTTGTTGGCTCCGATATGAGACCTCAAGAAGCTGCTAAAGTCGTACCTGTGAAACCTACACAAACATCAGTGTGATTGATCT</genome_strand>
        <mrna_strand>CACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCAGGTACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCGCAACTACCATGGGAGTTGGTGTAGCAGATGCAGGTGGGTACACACAGATGGCGTACGATGGTGGAGTAGGAAGGCAGATGTACTATCCTCCCCAAGGTGGTGTCATAGCGCCACCACAACAACAACCGCAGTACCACGCAATGCCGCCACAAGCTGTTGTTGGCTCCGATATGAGACCTCAAGAAGCTGCTAAAGTCGTACCTGTGAAACCTACACAAACATCAGTGTGATTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567602" ref_strand="+" ref_description="SGN-E567602 [11752]">
      <seq>ccggcacatgtgaaattgagagatccgaatgctgagcaagttgttaaggaaccgggaggatgccggttcatggnagtggatgataggatgatggggactgatccgatccagaagcacattcaggatctgcagagattgcatctagaagagcaacaaaatatgtatcgtcggaaaagcgacgataatctggcagcggctttccccgggaggtgactattatgttcagaggggaccggagaaaatagcttctcctaccgtgccgggtacagtacctgcacaggttggctattggcaggaaaaacaagtccccgggaggagtactgccgtcgagcagtctcggtatggaacaaccagtttacatgattcatcaagcacccaccggagcatatcacccacaccagcaccaacaccaacaccagcaccctcaatgtgtcaggccaatggccggaccaccggggacaagggtactacgccgttcagaggatgccacaggagccgtacagggatcaaccagtttacaatgtcatgcctagtttaccacaagcagtgccgacagttgcagcggcaccaccaactttacaatctcagggaacctccaaaggtggctggttattcggaaggatatggcatggtaagaaccggaactaccatggagttggtgtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25113" stop="23861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24813" g_stop="24161" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E567602" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24813" e_stop="24161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACC-AGA-GATGCCGGTTCATGG-AGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTCGGAAAAGCGACGATAATCTGACAGCGGCTTTCCCC-GGAGGTGATTATTATGTTCAGAGAGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTTCCC-GGAGGAGTACTGCCGGCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCGGCCGGAGCATATCAACCACACCAGCACCAACACCAACACC--CA----CAATTTGTCAGGCCAATGGCCGGACCACC-GGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCA-GGTACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCGCAACTACCATGGGAGTTGGTGTAGC</genome_strand>
        <mrna_strand>CCGGCACATGTGAAATTGAGAGATCCGAATGCTGAGCAAGTTGTTAAGGAACCGGGAGGATGCCGGTTCATGGNAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATATGTATCGTCGGAAAAGCGACGATAATCTGGCAGCGGCTTTCCCCGGGAGGTGACTATTATGTTCAGAGGGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTCCCCGGGAGGAGTACTGCCGTCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCCACCGGAGCATATCACCCACACCAGCACCAACACCAACACCAGCACCCTCAATGTGTCAGGCCAATGGCCGGACCACCGGGGACAAGGGTACTACGCCGTTCAGAGGATGCCACAGGAGCCGTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTGCCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCAGGGAACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGAACCGGAACTACCAT-GGAGTTGGTGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697844" ref_strand="+" ref_description="SGN-E697844 [FA04BH04]">
      <seq>cgctctacttatcaaaaatacagtagaaaatcctcctaaaccccccaaaacatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaattgagagatccgaactctgagcaagttgttaaggaaccagagatgccggttcatggagtggatgataggatgatggggactgatccgatccagaagcacattcaggatctgcagagattgcatctagaagagcaacaaaatttgtatcgtcggaaaagcgacgataatctgacagcggctttccccggaggtgattattatgttcagagaggaccggagaaaatagcttctcctaccgtgccgggtacagtacctgcacaggttggctattggcaggaaaaacaagttcccggaggagtactgccggcgagcagtctcggtatggaacaaccagtttacatgattcatcaagcaccggccggagcatatcaaccacaccagcaccaacaccaacacccacaatttgtcaggccaatggccggaccaccgggtcaagggtactacgccgtacagaggatgccacaggagccttacagggatcaaccagtttacaatgtcatgcctagtttaccacaagcagtaccgacagttgcagcggcaccaccaactttacaatctcaggtacctccaaaggtggctggttattcggaaggatatggcatggtaagacccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25786" stop="23886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25488" g_stop="25380" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25379" i_stop="24805" i_length="575">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24804" g_stop="24186" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="728" r_length="619" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E697844" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25488" e_stop="25380"/>
          <exon e_start="24804" e_stop="24186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCCAAATCGGAGAAGGATAGGTTTGTCGATGCGTTGAATTCTGGTCCGATTCAGGCGTCTCCGGCTGCGGGGGCTGTTGCACAGCAGGTTGGAAACGCGGATTTTCTGTTTGGTTCAGAGAAAGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTCGGAAAAGCGACGATAATCTGACAGCGGCTTTCCCCGGAGGTGATTATTATGTTCAGAGAGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTTCCCGGAGGAGTACTGCCGGCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCGGCCGGAGCATATCAACCACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCAGGTACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCG</genome_strand>
        <mrna_strand>CGCTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTCGGAAAAGCGACGATAATCTGACAGCGGCTTTCCCCGGAGGTGATTATTATGTTCAGAGAGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTTCCCGGAGGAGTACTGCCGGCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCGGCCGGAGCATATCAACCACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCAGGTACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368442" ref_strand="+" ref_description="SGN-E368442 [TUS-23-J3]">
      <seq>agggatggtaccgccacatgtgaaattgagagatccgaactctgagcaagttgttaaggaaccagagatgccggttcatggagtggatgataggatgatggggactgatccgatccagaagcacattcaggatctgcagagattgcatctagaagagcaacaaaatttgtatcgtcggaaaagcgacgataatctgacagcggctttccccggaggtgattattatgttcagagaggaccggagaaaatagcttctcctaccgtgccgggtacagtacctgcacaggttggctattggcaggaaaaacaagttcccggaggagtactgccggcgagcagtctcggtatggaacaaccagtttacatgattcatcaagcaccggccggagcatatcaaccacaccagcaccaacaccaacacccacaatttgtcaggccaatggccggaccaccgggtcaagggtactacgccgtacagaggatgccacaggagccttacagggatcaaccagtttacaatgtcatgcctagtttaccacaagcagtaccgacagttgcagcggcaccaccaactttacattttcaggtaccttcaaaggtggctggttattcggaaggatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25123" stop="23902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24823" g_stop="24200" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E368442" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24823" e_stop="24200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTCGGAAAAGCGACGATAATCTGACAGCGGCTTTCCCCGGAGGTGATTATTATGTTCAGAGAGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTTCCCGGAGGAGTACTGCCGGCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCGGCCGGAGCATATCAACCACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCAGGTACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGG</genome_strand>
        <mrna_strand>AGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTCGGAAAAGCGACGATAATCTGACAGCGGCTTTCCCCGGAGGTGATTATTATGTTCAGAGAGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTTCCCGGAGGAGTACTGCCGGCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCGGCCGGAGCATATCAACCACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACATTTTCAGGTACCTTCAAAGGTGGCTGGTTATTCGGAAGGATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246329" ref_strand="+" ref_description="SGN-E246329 [cLEF-40-D24]">
      <seq>agggatggtaccgccacatgtgaaattgagagatccgaactctgagcaagttgttaaggaaccagagatgccggttcatggagtggatgataggatgatggggactgatccgatccagaagcacattcaggatctgcagagattgcatctagaagagcaacaaaatttgtatcgtcggaaaagcgacgataatctgacagcggctttccccggaggtgattattatgttcagagaggaccggagaaaatagcttctcctaccgtgccgggtacagtacctgcacaggttggctattggcaggaaaaacaagttcccggaggagtactgccggcgagcagtctcggtatggaacaaccagtttacatgattcatcaagcaccggccggagcatatcaaccacaccagcaccaacaccaacacccacaatttgtcaggccaatggccggaccaccgggtcaagggtactacgccgtacagaggatgccacaggagccttacagggatcaaccagtttacaatgtcatgcctagtttaccacaagcagtaccgacagttgcagcggcaccaccaactttacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25123" stop="23942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24823" g_stop="24242" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E246329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24823" e_stop="24242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTCGGAAAAGCGACGATAATCTGACAGCGGCTTTCCCCGGAGGTGATTATTATGTTCAGAGAGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTTCCCGGAGGAGTACTGCCGGCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCGGCCGGAGCATATCAACCACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATC</genome_strand>
        <mrna_strand>AGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTCGGAAAAGCGACGATAATCTGACAGCGGCTTTCCCCGGAGGTGATTATTATGTTCAGAGAGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTTCCCGGAGGAGTACTGCCGGCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCGGCCGGAGCATATCAACCACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697775" ref_strand="+" ref_description="SGN-E697775 [FA04AH11]">
      <seq>cccatgaatgatcaaaaatacagtagaaaatcctcctaaaccccccaaaacatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaattgagagatccgaactctgagcaagttgttaaggaaccagagatgccggttcatggagtggatgataggatgatggggactgatccgatccagaagcacattcaggatctgcagagattgcatctagaagagcaacaaaatttgtatcgtcggaaaagcgacgataatctgacagcggctttccccggaggtgattattatgttcagagaggaccggagaaaatagcttctcctaccgtgccgggtacagtacctgcacaggttggctattggcaggaaaaacaagttcccggaggagtactgccggcgagcagtctcggtatggaacaaccagtttacatgattcatcaagcaccggccggagcatatcaaccacaccagcaccaacaccaacacccacaatttgtcaggccaatggccggaccaccgggtcaagggtactacgccgtacagaggatgccacaggagccttacagggatcacccagtttacaatgtcatgcctagtttaccacaagcagtaccgacagttgcagcggcaccaccaactttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25786" stop="23945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25488" g_stop="25380" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25379" i_stop="24805" i_length="575">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24804" g_stop="24244" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="670" r_length="561" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E697775" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25488" e_stop="25380"/>
          <exon e_start="24804" e_stop="24244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCCAAATCGGAGAAGGATAGGTTTGTCGATGCGTTGAATTCTGGTCCGATTCAGGCGTCTCCGGCTGCGGGGGCTGTTGCACAGCAGGTTGGAAACGCGGATTTTCTGTTTGGTTCAGAGAAAGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTCGGAAAAGCGACGATAATCTGACAGCGGCTTTCCCCGGAGGTGATTATTATGTTCAGAGAGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTTCCCGGAGGAGTACTGCCGGCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCGGCCGGAGCATATCAACCACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAA</genome_strand>
        <mrna_strand>CCCATGAATGATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTCGGAAAAGCGACGATAATCTGACAGCGGCTTTCCCCGGAGGTGATTATTATGTTCAGAGAGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTTCCCGGAGGAGTACTGCCGGCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCGGCCGGAGCATATCAACCACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCACCCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400012" ref_strand="+" ref_description="SGN-E400012 [cSTC-4-C15]">
      <seq>ggatgatggggactgatccgatccagaagcacattcaggatctgcagagattgcatctagaagagcaacaaaatatgtatcgtcggaaaagcgacgataatctggcagcggctttccccggaggtgactattatgttcagaggggaccggagaaaatagcttctcctaccgtgccgggtacagtacctgcacaggttggctattggcaggaaaaacaagtccccggaggagtactgccgtcgagcagtctcggtatggaacaaccagtttacatgattcatcaagcacccaccggagcatatcacccacaccagcaccaacaccaacaccagcaccctcaatttgtcaggccaatggccggaccaccgggacaagggtactacgccgttcagaggatgccacaggagccgtacagggatcaaccagtttacaatgtcatgcctagtttacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25031" stop="23986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24731" g_stop="24286" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E400012" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24731" e_stop="24286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTCGGAAAAGCGACGATAATCTGACAGCGGCTTTCCCCGGAGGTGATTATTATGTTCAGAGAGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTTCCCGGAGGAGTACTGCCGGCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCGGCCGGAGCATATCAACCACACCAGCACCAACACCAACACC--CA----CAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCA</genome_strand>
        <mrna_strand>GGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATATGTATCGTCGGAAAAGCGACGATAATCTGGCAGCGGCTTTCCCCGGAGGTGACTATTATGTTCAGAGGGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTCCCCGGAGGAGTACTGCCGTCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCCACCGGAGCATATCACCCACACCAGCACCAACACCAACACCAGCACCCTCAATTTGTCAGGCCAATGGCCGGACCACCGGGACAAGGGTACTACGCCGTTCAGAGGATGCCACAGGAGCCGTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584270" ref_strand="+" ref_description="SGN-E584270 [10093]">
      <seq>atcgtctttatagagcttcacctaaaccagctaggcttaggttgtttttgtttccgccgaatccgccggcgactgttgggagtggggtgtcgcagagccagagttttggttcggaggattcgaaatcggagaaggataggtttgtggatgcgttgaattctggtccgattcatgcgtctccgactgcgggggctgttccacagcaggttggaaacgcggattttctgtttggttcagagaaggggatggtaccgccacatgtgaaattgagagatccgaatgctgagcaagttgttaaggaaccggagatgccggttcatggagtggatgataggatgatggggactgatccgatccagaagcacattcaggatctgcagagattgcatctagaagagcaacaaaatatgtatcgtcggaaaagcgacgataatctggcagcggctttccccggaggtgactattatgttcagaggggaccggagaaaatagcttctcctaccgtgccgggtacagtacctgcacaggttggctattggcaggaaaaacagtccccggaaggagtactgcgtcgagcagttctcgggtaatgggaaccaaccagttttacatggatttcatccaagcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25364" stop="24145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25064" g_stop="24496" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E584270" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25064" e_stop="24496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCCAAATCGGAGAAGGATAGGTTTGTCGATGCGTTGAATTCTGGTCCGATTCAGGCGTCTCCGGCTGCGGGGGCTGTTGCACAGCAGGTTGGAAACGCGGATTTTCTGTTTGGTTCAGAGAAAGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTCGGAAAAGCGACGATAATCTGACAGCGGCTTTCCCCGGAGGTGATTATTATGTTCAGAGAGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTTCCCGG-AGGAGTACTG</genome_strand>
        <mrna_strand>ATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGCCGAATCCGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCAGAGTTTTGGTTCGGAGGATTCGAAATCGGAGAAGGATAGGTTTGTGGATGCGTTGAATTCTGGTCCGATTCATGCGTCTCCGACTGCGGGGGCTGTTCCACAGCAGGTTGGAAACGCGGATTTTCTGTTTGGTTCAGAGAAGGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAATGCTGAGCAAGTTGTTAAGGAACCGGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATATGTATCGTCGGAAAAGCGACGATAATCTGGCAGCGGCTTTCCCCGGAGGTGACTATTATGTTCAGAGGGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAAC-AGTCCCCGGAAGGAGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702767" ref_strand="+" ref_description="SGN-E702767 [FA19CE11]">
      <seq>ctctacttatcaaaaatacagtagaaaatcctcctaaaccccccaaaacatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaattgattttgaaaacactgccgcatgggaagatccgaatcaaatccctaattataaggtcaaattcatgtgtagttatggtggtaagattcacccgagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactatctgttgagcggaatactaagtttcctcttctcatttctaagcttgctgctatttgtgatacggatactgtttcctttaagtatcagctgccaggtgaggaccttgatgctttaatttctgttactaatgatgatgatttagaacatatgatgcatgagtatgatcgtctttatagagcttcacctaaaccagctaggcttaggttgtttttgtttccggccaatacgccggcgactgttgggagtggggtgtcgcagagccggagttttggttcggaggattccaaatcggagaaggataggtttgtcgatgcgttgaattctggtccgattcaggcgtctccggctgcgggggctgttgcacagcaggttggaaacgcggattttctgtttggttcagagaaagggatggtaccgccacatgtgaaattgagagatccgaactctgagcaagttgttaaggaaccagagatgccggttcatggagtggatgataggatgatggggactgatccgatccagaagcacattcaggatctgcagagattgcatctagaagagcaacaaaatttgtatcgtcggaaaagcgacgataatctgacagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25786" stop="24322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25486" g_stop="24622" g_length="865"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="865" r_length="865" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E702767" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25486" e_stop="24622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCCAAATCGGAGAAGGATAGGTTTGTCGATGCGTTGAATTCTGGTCCGATTCAGGCGTCTCCGGCTGCGGGGGCTGTTGCACAGCAGGTTGGAAACGCGGATTTTCTGTTTGGTTCAGAGAAAGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTCGGAAAAGCGACGATAATCTGACAGCG</genome_strand>
        <mrna_strand>CTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCCAAATCGGAGAAGGATAGGTTTGTCGATGCGTTGAATTCTGGTCCGATTCAGGCGTCTCCGGCTGCGGGGGCTGTTGCACAGCAGGTTGGAAACGCGGATTTTCTGTTTGGTTCAGAGAAAGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTCGGAAAAGCGACGATAATCTGACAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705695" ref_strand="+" ref_description="SGN-E705695 [FA27DE08]">
      <seq>aaactctacttatcaaaaatacagtagaaaatcctcctaaaccccccaaaacatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaattgattttgaaaacactgccgcatgggaagatccgaatcaaatccctaattataaggtcaaattcatgtgtagttatggtggtaagattcacccgagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactatctgttgagcggaatactaagtttcctcttctcatttctaagcttgctgctatttgtgatacggatactgtttcctttaagtatcagctcccaggtgaggaccttgatgctttaatttctgttactaatgatgatgatttagaacatatgatgcatgagtatgatcgtctttatagagcttcacctaaaccagctaggcttaggttgtttttgtttccggccaatacgccggcgactgttgggagtggggtgtcgcagagccggagttttggttcggaggattccaaatcggagaaggataggtttgtcgatgcgttgaattctggtccgattcaggcgtctccggctgcgggggctgttgcacagcaggttggaaacgcggattttctgtttggttcagagaaagggatggtaccgccacatgtgaaattgagagatccgaactctgagcaagttgttaaggaaccagagatgccggttcatggagtggatgataggatgatggggactgatccgatccagaagcacattcaggatctgcagagattgcatctagaagagcaacaaaatttgtatcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25789" stop="24348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25489" g_stop="24648" g_length="842"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="842" r_length="842" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E705695" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25489" e_stop="24648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCCAAATCGGAGAAGGATAGGTTTGTCGATGCGTTGAATTCTGGTCCGATTCAGGCGTCTCCGGCTGCGGGGGCTGTTGCACAGCAGGTTGGAAACGCGGATTTTCTGTTTGGTTCAGAGAAAGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTC</genome_strand>
        <mrna_strand>AAACTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTCCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCCAAATCGGAGAAGGATAGGTTTGTCGATGCGTTGAATTCTGGTCCGATTCAGGCGTCTCCGGCTGCGGGGGCTGTTGCACAGCAGGTTGGAAACGCGGATTTTCTGTTTGGTTCAGAGAAAGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719485" ref_strand="+" ref_description="SGN-E719485 [FC08AA09]">
      <seq>aatcggccgaattgagtcttctctaatggcctatactctacttatcaaaaatacagtagaaaatcctcctaaaccccccaaaacatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaattgattttgaaaacactgccgcatgggaagatccgaatcaaatccctaattataaggtcaaattcatgtgtagttatggtggtaagattcacccgagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactatctgttgagcggaatactaagtttcctcttctcatttctaagcttgctgctatttgtgatacggatactgtttcctttaagtatcagctgccaggtgaggaccttgatgctttaatttctgttactaatgatgatgatttagaacatatgatgcatgagtatgatcgtctttatagagcttcacctaaaccagctaggcttaggttgtttttgtttccggccaatacgccggcgactgttgggagtggggtgtcgcaaagccggagttttggttcggaggattccaaatcggagaaggataggtttgtcgatgcgttgaattctggtccgattcaggcgtctccggctgcgggggctgttgcacagcaggttggaaacgcggattttctgtttggttcagagaaagggatggtaccgccacatgtgaaattgagagatccgaactctgagcaagttgttaaggaaccagagatgccggttcatggagtggatgataggatgatggggactgatccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25810" stop="24410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25505" g_stop="24710" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="812" r_length="796" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E719485" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25505" e_stop="24710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTAATGGCCTAAACTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCCAAATCGGAGAAGGATAGGTTTGTCGATGCGTTGAATTCTGGTCCGATTCAGGCGTCTCCGGCTGCGGGGGCTGTTGCACAGCAGGTTGGAAACGCGGATTTTCTGTTTGGTTCAGAGAAAGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGAT</genome_strand>
        <mrna_strand>TCTTCTCTAATGGCCTATACTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGTCGCAAAGCCGGAGTTTTGGTTCGGAGGATTCCAAATCGGAGAAGGATAGGTTTGTCGATGCGTTGAATTCTGGTCCGATTCAGGCGTCTCCGGCTGCGGGGGCTGTTGCACAGCAGGTTGGAAACGCGGATTTTCTGTTTGGTTCAGAGAAAGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465617" ref_strand="+" ref_description="SGN-E465617 [cPRO-21-P5]">
      <seq>attacaaggtcaaattcatgtgtagttatggtggtaagattcaccctagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactctctgttgagcggaatactaagtttcctgttctcatttctaagcttgctgctatttgtgatactgatactgtttcctttaagtatcagcttccaggtgaggaccttgatgctttgatttctgttactaatgatgatgatctagaacatatgatgcatgagtatgatcgtctttatagagcttcacctaaaccatctaggcttaggttgtttttgtttccggcgaatccgccggcgactgttgggagtgaggtgtcgcagagccggagttttggttcggaggattcgaaatcggagaaggataggtttgtggatgcgttgaattctggtccgattcatgcgtctccgactgcgggggctgttccacagcaagttggaaacgcggattttctgtatggttcaaagaaggagatggtaccgccacatgtgatattgatagatccgaatgctgagcaagttgttatagaaccggagatgccagttcatggagtggatgataggatgatggggactgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25625" stop="24413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25325" g_stop="24713" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E465617" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25325" e_stop="24713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCCAAATCGGAGAAGGATAGGTTTGTCGATGCGTTGAATTCTGGTCCGATTCAGGCGTCTCCGGCTGCGGGGGCTGTTGCACAGCAGGTTGGAAACGCGGATTTTCTGTTTGGTTCAGAGAAAGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCC</genome_strand>
        <mrna_strand>ATTACAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCTAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTCTCTGTTGAGCGGAATACTAAGTTTCCTGTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACTGATACTGTTTCCTTTAAGTATCAGCTTCCAGGTGAGGACCTTGATGCTTTGATTTCTGTTACTAATGATGATGATCTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCATCTAGGCTTAGGTTGTTTTTGTTTCCGGCGAATCCGCCGGCGACTGTTGGGAGTGAGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCGAAATCGGAGAAGGATAGGTTTGTGGATGCGTTGAATTCTGGTCCGATTCATGCGTCTCCGACTGCGGGGGCTGTTCCACAGCAAGTTGGAAACGCGGATTTTCTGTATGGTTCAAAGAAGGAGATGGTACCGCCACATGTGATATTGATAGATCCGAATGCTGAGCAAGTTGTTATAGAACCGGAGATGCCAGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453340" ref_strand="+" ref_description="SGN-E453340 [cSTS-19-N11]">
      <seq>caaaaaacagtagaaaatcctcctaaacccccaaaaatggagaactactcttacacctcttaccctgaatcaggcgattcatctccccgttcccgtgaaattgattttgaaaatactgccgcatgggaagatccgaatcaaatccctaattacaaggtcaaattcatgtgtagttatggtggtaagattcaccctagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactctctgttgagcggaatactaagtttcctgttctcatttctaagcttgctgctatttgtgatactgatactgtttcctttaagtatcagcttccaggtgaggaccttgatgctttgatttctgttactaatgatgatgatctagaacatatgatgcatgagtatgatcgtctttatagagcttcacctaaaccagctaggcttaggttgtttttgtttccggcgaatccgccggcgactgttgggagtgaggtgtcgcagagccggagttttggttcggaggattcgaaatcggagaaggataggtttgtggatgcgttgaattctggtccgattcatgcgtctccgactgcgggggctgttccacagcaggttggaaacgcggattttctgtttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25776" stop="24532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25476" g_stop="24832" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E453340" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25476" e_stop="24832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCCAAATCGGAGAAGGATAGGTTTGTCGATGCGTTGAATTCTGGTCCGATTCAGGCGTCTCCGGCTGCGGGGGCTGTTGCACAGCAGGTTGGAAACGCGGATTTTCTGTTTGGT</genome_strand>
        <mrna_strand>CAAAAA-ACAGTAGAAAATCCTCCTAAA-CCCCCAAAA-ATGGAGAACTACTCTTACACCTCTTACCCTGAATCAGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAATACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTACAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCTAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTCTCTGTTGAGCGGAATACTAAGTTTCCTGTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACTGATACTGTTTCCTTTAAGTATCAGCTTCCAGGTGAGGACCTTGATGCTTTGATTTCTGTTACTAATGATGATGATCTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCGAATCCGCCGGCGACTGTTGGGAGTGAGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCGAAATCGGAGAAGGATAGGTTTGTGGATGCGTTGAATTCTGGTCCGATTCATGCGTCTCCGACTGCGGGGGCTGTTCCACAGCAGGTTGGAAACGCGGATTTTCTGTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456083" ref_strand="+" ref_description="SGN-E456083 [cSTS-28-B7]">
      <seq>tgctcccacttatcaaaaaaagtagaaaactcctcctaaacccccaaaaatggagaactaactcttacacctcttaccctgaatcaggcgattcatctccccgttcccgtgaaattgattttgaaaatactgccgcatgggaagatccgaatcaaatccctaattacaaggtcaaattcatgtgtagttatggtggtaagattcaccctagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactctctgttgagcggaatactaagtttcctgttctcatttctaagcttgctgctatttgtgatactgatactgtttcctttaagtatcagcttccaggtgaggaccttgatgctttgatttctgttactaatgatgatgatctagaacatatgatgcatgagtatgatcgtctttatagagcttcacctaaaccagctaggcttaggttgtttttgtttccggcgaatccgccggcgactgttgggagtgaggtgtcgcagagccggagttttggttcggaggattcgaaatcggagaaggataggtttgtggatgcgttgaattctggtccgattcatgcgtctccgactgcgggggctgttccacagcaggttggaaacgcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25786" stop="24545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25465" g_stop="24845" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="643" r_length="621" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E456083" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25465" e_stop="24845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAA-TCCTCCTAAACCCCCCAAAACATGGAGAACT-ACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCCAAATCGGAGAAGGATAGGTTTGTCGATGCGTTGAATTCTGGTCCGATTCAGGCGTCTCCGGCTGCGGGGGCTGTTGCACAGCAGGTTGGAAACGCGGA</genome_strand>
        <mrna_strand>TAGAAAACTCCTCCTAAA-CCCCCAAAA-ATGGAGAACTAACTCTTACACCTCTTACCCTGAATCAGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAATACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTACAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCTAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTCTCTGTTGAGCGGAATACTAAGTTTCCTGTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACTGATACTGTTTCCTTTAAGTATCAGCTTCCAGGTGAGGACCTTGATGCTTTGATTTCTGTTACTAATGATGATGATCTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCGAATCCGCCGGCGACTGTTGGGAGTGAGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCGAAATCGGAGAAGGATAGGTTTGTGGATGCGTTGAATTCTGGTCCGATTCATGCGTCTCCGACTGCGGGGGCTGTTCCACAGCAGGTTGGAAACGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448158" ref_strand="+" ref_description="SGN-E448158 [cSTS-1-L18]">
      <seq>ctacatcatctaaaaacagtagaaaatcctcttaaaccccccccaaaaaaatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaatcgattttgaaaacactgccgcatgggaagatccgaatcaaatccctaattacaaggtcaaattcatgtgtagttatggtggtaagattcaccctagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactctctgttgagcggaatactaagtttcctgttctcatttctaagcttgctgctatttgtgatactgatactgtttcctttaagtatcagcttccaggtgaggaccttgatgctttgatttctgttactaatgatgatgatctagaacatatgatgcatgagtatgatcgtctttatagagcttcacctaaaccagctaggcttaggttgtttttgtttccggcgaatccgccggcgactgttgggagtgaggtgtcgcagagccggagttttggttcggaggattcgaaatcggagaaggataggtttgtggatgcgttgaattctggtccgattcatgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25784" stop="24588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25484" g_stop="24888" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E448158" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25484" e_stop="24888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAC-TTATCAAAAATACAGTAGAAAATCCTCCTAAACCC--CCC-AAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCCAAATCGGAGAAGGATAGGTTTGTCGATGCGTTGAATTCTGGTCCGATTCAGGCGT</genome_strand>
        <mrna_strand>CTACATCATCTAAAA-ACAGTAGAAAATCCTCTTAAACCCCCCCCAAAAAAATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATCGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTACAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCTAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTCTCTGTTGAGCGGAATACTAAGTTTCCTGTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACTGATACTGTTTCCTTTAAGTATCAGCTTCCAGGTGAGGACCTTGATGCTTTGATTTCTGTTACTAATGATGATGATCTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCGAATCCGCCGGCGACTGTTGGGAGTGAGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCGAAATCGGAGAAGGATAGGTTTGTGGATGCGTTGAATTCTGGTCCGATTCATGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441946" ref_strand="+" ref_description="SGN-E441946 [cSTA-31-J9]">
      <seq>cctgactccacttatcaaaaaacagtagaaaatcctcctaaacccccaaaaatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaatcgattttgaaaacactgccgcatgggaagatccgaatcaaatccctaattacaaggtcaaattcatgtgtagttatggtggtaagattcaccctagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactctctgttgagcggaatactaagtttcctgttctcatttctaagcttgctgctatttgtgatactgatactgtttcctttaagtatcagcttccaggtgaggaccttgatgctttgatttctgttactaatgatgatgatctagaacatatgatgcatgagtatgatcgtctttatagagcttcacctaaaccagctaggcttaggttgtttttgtttccgccgaatccgccggcgactgttgggagtggggtgtcgcagagccagagttttggttcggaggattcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25787" stop="24640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25492" g_stop="24941" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E441946" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25492" e_stop="24941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAACTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCCAA</genome_strand>
        <mrna_strand>CCT-GACTCCACTTATCAAAAA-ACAGTAGAAAATCCTCCTAAA-CCCCCAAAA-ATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATCGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTACAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCTAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTCTCTGTTGAGCGGAATACTAAGTTTCCTGTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACTGATACTGTTTCCTTTAAGTATCAGCTTCCAGGTGAGGACCTTGATGCTTTGATTTCTGTTACTAATGATGATGATCTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGCCGAATCCGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCAGAGTTTTGGTTCGGAGGATTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441947" ref_strand="+" ref_description="SGN-E441947 [cSTA-31-J9]">
      <seq>cctgactccacttatcaaaaaacagtagaaaatcctcctaaacccccaaaaatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaatcgattttgaaaacactgccgcatgggaagatccgaatcaaatccctaattacaaggtcaaattcatgtgtagttatggtggtaagattcaccctagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactctctgttgagcggaatactaagtttcctgttctcatttctaagcttgctgctatttgtgatactgatactgtttcctttaagtatcagcttccaggtgaggaccttgatgctttgatttctgttactaatgatgatgatctagaacatatgatgcatgagtatgatcgtctttatagagcttcacctaaaccagctaggcttaggttgtttttgtttccgccgaatccgccggcgactgttgggagtggggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25787" stop="24675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25492" g_stop="24975" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E441947" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25492" e_stop="24975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAACTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGT</genome_strand>
        <mrna_strand>CCT-GACTCCACTTATCAAAAA-ACAGTAGAAAATCCTCCTAAA-CCCCCAAAA-ATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATCGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTACAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCTAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTCTCTGTTGAGCGGAATACTAAGTTTCCTGTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACTGATACTGTTTCCTTTAAGTATCAGCTTCCAGGTGAGGACCTTGATGCTTTGATTTCTGTTACTAATGATGATGATCTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGCCGAATCCGCCGGCGACTGTTGGGAGTGGGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440035" ref_strand="+" ref_description="SGN-E440035 [cSTA-14-B22]">
      <seq>aaaaaacagttgaaaatcctcctaaacccccaaaaatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaatcgatttcgaaaacactgccgcatgggaagatccgaatcaaatccctaattacaaggtcaaattcatgtgtagttatggtggtaagattcaccctagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactctctgttgagcggaatactaagtttcctgttctcatttctaagcttgctgctatttgtgatactgatactgtttcctttaagtatcagcttccaggtgaggaccttgatgctgtgatttctgttactaatgatgatgatctagaacatatgatgcatgagtatgatcgtctttatagagcttcacctaaaccagctaggcttaggttgtttttgtttccgccgaatccgccggcgactgttgggagtggggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25775" stop="24675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25474" g_stop="24975" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E440035" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25474" e_stop="24975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGT</genome_strand>
        <mrna_strand>AAAAAACAGTTGAAAATCCTCCTAAA-CCCCCAAAA-ATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATCGATTTCGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTACAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCTAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTCTCTGTTGAGCGGAATACTAAGTTTCCTGTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACTGATACTGTTTCCTTTAAGTATCAGCTTCCAGGTGAGGACCTTGATGCTGTGATTTCTGTTACTAATGATGATGATCTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGCCGAATCCGCCGGCGACTGTTGGGAGTGGGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483863" ref_strand="+" ref_description="SGN-E483863 [cSTE-11-O3]">
      <seq>cctgactccacttatcaaaaaacagtagaaaatcctcctaaacccccaaaaatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaatcgattttgaaaacactgccgcatgggaagatccgaatcaaatccctaattacaaggtcaaattcatgtgtagttatggtggtaagattcaccctagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactctctgttgagcggaatactaagtttcctgttctcatttctaagcttgctgctatttgtgatactgatactgtttcctttaagtatcagcttccaggtgaggaccttgatgctttgatttctgttactaatgatgatgatctagaacatatgatgcatgagtatgatcgtctttatagagcttcacctaaaccagctaggcttaggttggttttgtttccgccgaatccgccggcgactgttgggagtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25787" stop="24679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25492" g_stop="24979" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E483863" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25492" e_stop="24979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAACTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGG</genome_strand>
        <mrna_strand>CCT-GACTCCACTTATCAAAAA-ACAGTAGAAAATCCTCCTAAA-CCCCCAAAA-ATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATCGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTACAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCTAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTCTCTGTTGAGCGGAATACTAAGTTTCCTGTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACTGATACTGTTTCCTTTAAGTATCAGCTTCCAGGTGAGGACCTTGATGCTTTGATTTCTGTTACTAATGATGATGATCTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGGTTTTGTTTCCGCCGAATCCGCCGGCGACTGTTGGGAGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484436" ref_strand="+" ref_description="SGN-E484436 [cSTE-13-I6]">
      <seq>cgaggccaaaaaacagtagaaaatcctcctaaacccccaaaatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaatcgattttgaaaaccactgccgcatgggaagactccgaatcaaatccctaattacaaggtcaaattcatgtgtagttatggtggtaagaattcaccctagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactctctgttgagcggaatactaagtttcctgttctcatttctaagcttgctgctatttgtgatactgatactgtttcctttaagtatcagcttccaggtgaggaccttgatgctttgatttctgttactaatgatgatgatctagaacatatgatgcatgagtatgatcgtctttatagagcttcacctaaaccagctaggcttaggttgtttttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25776" stop="24713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25465" g_stop="25013" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="469" r_length="453" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E484436" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25465" e_stop="25013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAA-CACTGCCGCATGGGAAGA-TCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAG-ATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTT</genome_strand>
        <mrna_strand>TAGAAAATCCTCCTAAAC-CCCC-AAA-ATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATCGATTTTGAAAACCACTGCCGCATGGGAAGACTCCGAATCAAATCCCTAATTACAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGAATTCACCCTAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTCTCTGTTGAGCGGAATACTAAGTTTCCTGTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACTGATACTGTTTCCTTTAAGTATCAGCTTCCAGGTGAGGACCTTGATGCTTTGATTTCTGTTACTAATGATGATGATCTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267130" ref_strand="+" ref_description="SGN-E267130 [cLEI-4-H2]">
      <seq>aaaaatacagtagaaaatcctcctaaaccccccaaaacatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaattgattttgaaaacactgccgcatgggaagatccgaatcaaatccctaattataaggtcaaattcatgtgtagttatggtggtaagattcacccgagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactatctgttgagcggaatactaagtttcctcttctcatttctaagcttgctgctatttgtgatacggatactgtttcctttaagtatcagctgccaggtgaggaccttgatgctttaatttctgttactaatgatgatgatttagaacatatgatgcatgagtatgatcgtctttatagagcttcacctaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25775" stop="24737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25475" g_stop="25037" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E267130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25475" e_stop="25037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACC</genome_strand>
        <mrna_strand>AAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484428" ref_strand="+" ref_description="SGN-E484428 [cSTE-13-G6]">
      <seq>caaaaaacagtagaaaatcctcctaaacccccaaaaatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaatcgattttgaaaacactgccgcatgggaagatccgaatcaaatccctaattacaaggtcaaattcatgtgtagttatggtggtaagattcaccctagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactctctgttgagcggaatactaagtttcctgttctcatttctaagcttgctgctatttgtgatactgatactgtttcctttaagtatcagcttccatgtgaggaccttgatgctttgattgctgttactaatgatgatgatctagaacatatgatgcatgagtatgatcgtctttatagagcttcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25776" stop="24743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25476" g_stop="25043" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E484428" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25476" e_stop="25043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACC</genome_strand>
        <mrna_strand>CAAAAA-ACAGTAGAAAATCCTCCTAAA-CCCCCAAAA-ATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATCGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTACAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCTAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTCTCTGTTGAGCGGAATACTAAGTTTCCTGTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACTGATACTGTTTCCTTTAAGTATCAGCTTCCATGTGAGGACCTTGATGCTTTGATTGCTGTTACTAATGATGATGATCTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565661" ref_strand="+" ref_description="SGN-E565661 [4100]">
      <seq>ctccacttatcaaaaaacagtagaaaatcctcctaaaccccaaaaatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaatcgattttgaaaacactggcgcatgggaagatccgaatcaaatccctaattacaatgtccaattcatgtgtagttatggtggtaagattcaccctagaactcatgataaccagcttggttacatcggcggtgaaactaaaatactctctgttgagcggaatactaagtttcctggtctcatttctaagcttgctgctatttgggatactgatacttgtttcctttaagtatcaggttccaggtgaagaccttgatgctttgatttctgttactaatgatgatgatctagaacatatgatggctgagtattatcggctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25786" stop="24754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25486" g_stop="25054" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E565661" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E565661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25486" e_stop="25054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATAC-TGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTAT</genome_strand>
        <mrna_strand>CTCCACTTATCAAAAA-ACAGTAGAAAATCCTCCTAAA--CCCCAAAA-ATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATCGATTTTGAAAACACTGGCGCATGGGAAGATCCGAATCAAATCCCTAATTACAATGTCCAATTCATGTGTAGTTATGGTGGTAAGATTCACCCTAGAACTCATGATAACCAGCTTGGTTACATCGGCGGTGAAACTAAAATACTCTCTGTTGAGCGGAATACTAAGTTTCCTGGTCTCATTTCTAAGCTTGCTGCTATTTGGGATACTGATACTTGTTTCCTTTAAGTATCAGGTTCCAGGTGAAGACCTTGATGCTTTGATTTCTGTTACTAATGATGATGATCTAGAACATATGATGGCTGAGTATTATCGGCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484443" ref_strand="+" ref_description="SGN-E484443 [cSTE-13-K6]">
      <seq>cacaaatcagttcaaaatcctcctaagcccccaaaaatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaatcaattttgaaaacactgccgcatgggaagatccgaatcaaatccctaattacaaggtcaaattcatgtgtagttatggaggtaagattcaccctagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactatgtgttgagcggaatactaagtttcctgtactcatttctaagcttgctgctatgtgtgacactgatactgattcctttaagtatcagcttccaggtgaggaccttgatgctttgatttctgttactaatgatgatgatctagaacatatgatgcctgagtatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25776" stop="24764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25476" g_stop="25064" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E484443" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25476" e_stop="25064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGA</genome_strand>
        <mrna_strand>CACAAAT-CAGTTCAAAATCCTCCT-AAGCCCCCAAAA-ATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATCAATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTACAAGGTCAAATTCATGTGTAGTTATGGAGGTAAGATTCACCCTAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATGTGTTGAGCGGAATACTAAGTTTCCTGTACTCATTTCTAAGCTTGCTGCTATGTGTGACACTGATACTGATTCCTTTAAGTATCAGCTTCCAGGTGAGGACCTTGATGCTTTGATTTCTGTTACTAATGATGATGATCTAGAACATATGATGCCTGAGTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298143" ref_strand="+" ref_description="SGN-E298143 [cLEW-9-O11]">
      <seq>tctacttatcaaaaatacagtagaaaatcctcctaaaccccccaaaacatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgaaattgattttgaaaacactgccgcatgggaagatccgaatcaaatccctaattataaggtcaaattcatgtgtcgctatggtggtaagagtcacccgagacctcatgataaccagcttgcttacatcggcggtgaaactaagatactatctgttgagcggaatactaagttacctcttctcatttctaagcttgctgctatttgtgatacggatactgtatcctttaagtatcagctgccaggtgaggaccttgatgctttaatatctgttactaatgatgatgatttagaacatatgatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25785" stop="24771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25485" g_stop="25071" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E298143" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25485" e_stop="25071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATG</genome_strand>
        <mrna_strand>TCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTCGCTATGGTGGTAAGAGTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAGATACTATCTGTTGAGCGGAATACTAAGTTACCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTATCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATATCTGTTACTAATGATGATGATTTAGAACATATGATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347547" ref_strand="+" ref_description="SGN-E347547 [cTOF-26-O13]">
      <seq>atccccccatcttctccatttttttcagtcttgtctaatggcctaaactctacttatcaaaaatacagtagaaaatcctcctaaaccccccaaaacatggagaactactcttacacctcttaccctgaatccggcgattcatctccccgttcccgtgggattgattttgaaaacactgccgcatgggaagatccgaatcaaatccctaattataagggcaaattcatgtgtagttatggtggtaagattcacccgagacctcatgataaccagcttgcttacatcggcggtgaaactaaaatactatctgttgagccgaatactaagtttcctcttctcatttctaaacttgctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="25833" stop="24876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25533" g_stop="25176" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E347547" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25533" e_stop="25176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCCCATCTTCTCCATTTTTTTCAGTCTTCTCTAATGGCCTAAACTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTA</genome_strand>
        <mrna_strand>ATCCCCCCATCTTCTCCATTTTTTTCAGTCTTGTCTAATGGCCTAAACTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGGGATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGGCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCCGAATACTAAGTTTCCTCTTCTCATTTCTAAACTTGCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485271" ref_strand="+" ref_description="SGN-E485271 [cSTE-17-E18]">
      <seq>gagactttcaagactctgtcaattcaaaaattgtgactgaaaaatggggaaaaagcaaataatgttgccggcgaatgaagtagaccttactgcagtcaaatatgtgcccgaaaaaattgaagctccacatttgacggggctttggttcaagttgtttgttaaagtaatggaggcacctgtaattggttctttaattgctagtcatctgaaggagaagaatgggattactgagattctgaagaatactgtgataccagaggttcccatgttcattccccagtttcctcttcaagagccagagcctggtgttgtttgcttagaagaagatggaaaacctgaagaacgggttgctttagcattgaagtgtcttccacattatgatcctacttgcagatggagttctgattcaggagaatcattccaattccgctattggaaaattcgtgattatggatatgcttacagatctaagcttacgaccccatctatggttgcagaacactttatctcagcaatggaggtatttaatagtaagcagcaatcagcaccactattaatctcatttgaccccgaggaagtgagaaggcaagcagcagcttccactcaaagatttgaggaaggaaacccattgtcaatcttggatgggattttcattgcagtcaaggatgacattgattgctatcctcatccttcaaagggtggttctaaatggtttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="36638" stop="38916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36860" g_stop="36878" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36879" i_stop="36943" i_length="65">
            <donor d_prob="0.637" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36944" g_stop="37046" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="122" r_length="103" r_score="0.903"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37047" i_stop="37138" i_length="92">
            <donor d_prob="0.796" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37139" g_stop="37248" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="232" r_length="110" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37249" i_stop="37322" i_length="74">
            <donor d_prob="0.910" d_score="0.98"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37323" g_stop="37383" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="293" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37384" i_stop="37803" i_length="420">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37804" g_stop="38000" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="490" r_length="197" r_score="0.909"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38001" i_stop="38070" i_length="70">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.882" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38071" g_stop="38200" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="620" r_length="130" r_score="0.954"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38201" i_stop="38437" i_length="237">
            <donor d_prob="0.942" d_score="0.96"/>
            <acceptor a_prob="0.387" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38438" g_stop="38515" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="698" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38516" i_stop="38595" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="38596" g_stop="38616" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="719" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E485271" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36860" e_stop="36878"/>
          <exon e_start="36944" e_stop="37046"/>
          <exon e_start="37139" e_stop="37248"/>
          <exon e_start="37323" e_stop="37383"/>
          <exon e_start="37804" e_stop="38000"/>
          <exon e_start="38071" e_stop="38200"/>
          <exon e_start="38438" e_stop="38515"/>
          <exon e_start="38596" e_stop="38616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTTTCAAGACTCTGTGTAGCATAATTTATCTATCTATCTTGTCAATTTTTTTCTTTGATTGTATCTGCTGTGTTTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAGGTTTTGTGTTTCAACTTTTTCGCTATGATGGATTACATTGTCAGTATCGTGTTTTTCGCCCTGAGTTTTTTTTTTTTAAAACTGATTTGCAGCTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAGGTTTGTTTACTTGCTATCTTGATGCATAAAAAGGAGATCAAGAAATTAAACAACGGTTGTGCTTTTATTGTCAGATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAGGTTCTATATTAAGCTCTTGCTGATTATCTTTCACTATTTTATGTGTTATAAATGATTCCAGTTAGTTGGGATTAAGTTTTAATCATGTTTGTAAATTTGCTTTAGGTCTAGTGTTTTCTAGTGAAACTAGTTTTTGATATTAGATTGGGACGGGCTTAGATTAGAGTGACATGGACATGGAGGATTCGTATAACTGATTCCGACTTGCTCGGGATTGAGTCATGATTGTTATTGTTGTCGTCTATCTGTACATCTATTTTTCATTCCCCCCTTCCCAATTAGTTGGTGATAAAATAATACTCAGCTGATTTTCGGACGTGTAAATGGAAAGAAGAATAATATTGCCATGATCCTGTTGAAGTTAGAATTCAGGAATTCAGGTGTTTTTCTAATGGTACTGACTTGTTTAGTATGTTTTAGAGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATGGCAAGTGACTTTCGGTTCATTGTTTTATTTCGGTCATCTTCAAGACTAATAAAGCTCTGTCATGCTAAAGGTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGACCCCGAGGAAGTGAGAAGGCAAGCGGCAGCTTCCACTCAAAGATTTGAGAAAGGTATTTTTATTTGTTGATGTGCATAAAGTTGGATCTTGCAAGGACCTACATATGCAATTCACAATTTGTCTTTTCTTTTTCTCTAAGTTTTCAGCACACGGCATCAAATAAATGATATTAGATTCCTGCAAATAATTCTTATCTCAAAGACTCAAACTACTGTGCCAAGTCTGCTGATTTTGTTACTAAACCGTATTCCCTTTCATCTTTTTTTTCTTTAATGATGTGGTCATGGAGGAAAACAACTGTCAATCTTGGAAGGGATTTTCATTGCAGTCAAGGATGACATTGATTGCTATCCTCATCCTTCAAAAGGTATTTGTTTAACTTCATATTTCCTCGGTAAATATCTCTGCCTTTTTTGGCTGAACATTTCTCCCTGTAAAAAAGTGCAGGTGGTTCTAAATGGTTTCATG</genome_strand>
        <mrna_strand>GAGACTTTCAAGACTCTGT.................................................................CAATTCAAAAATTGTGACTGAAAAATGGGGAAAAAGCAAATAATGTTGCCGGCGAATGAAGTAGACCTTACTGCAGTCAAATATGTGCCCGAAAAAATTGAAG............................................................................................CTCCACATTTGACGGGGCTTTGGTTCAAGTTGTTTGTTAAAGTAATGGAGGCACCTGTAATTGGTTCTTTAATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAG..........................................................................ATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTTCCTCTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGAGCCTGGTGTTGTTTGCTTAGAAGAAGATGGAAAACCTGAAGAACGGGTTGCTTTAGCATTGAAGTGTCTTCCACATTATGATCCTACTTGCAGATGGAGTTCTGATTCAGGAGAATCATTCCAATTCCGCTATTGGAAAATTCGTGATTATGGATATGCTTACAGATCTAAGCTTACGACCCCATCTATG......................................................................GTTGCAGAACACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCAATCAGCACCACTATTAATCTCATTTGACCCCGAGGAAGTGAGAAGGCAAGCAGCAGCTTCCACTCAAAGATTTGAGGAAG.............................................................................................................................................................................................................................................GAAACCCATTGTCAATCTTGGATGGGATTTTCATTGCAGTCAAGGATGACATTGATTGCTATCCTCATCCTTCAAAGG................................................................................GTGGTTCTAAATGGTTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271150" ref_strand="+" ref_description="SGN-E271150 [cLEM-22-H10]">
      <seq>tttttctttgattgtatctgctgtgtttttgtacagtacaaaaattgtgactgaaaaatggtgaaaaaacaagtaatgctgccggcgaatgaagtagaccttactgccgtcgaatatttacccgaaaaaattgaagctccacatttgacggggttttggttcaagttgtttgttaaagtaatcgaggcacctgtaattggttcttttattgctagtcatctgaaggagaagaatgggattactgagattctgaagaatactgtgataccagaggttcccatgttcattccccagttccctcttcaagagcaagagcctggtgttgtttgcttaggagaagatggaaaacctaaagaacaggttgatttagcatttaagtatcttccacattatgatcctgctagtagatggagttctgattcaagagaatcatcccaattccgctgctggaaaattcgtgattatgaatatgcatacagaaataagcttacgaccccatccatggttgcagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="36611" stop="38301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36911" g_stop="37046" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37047" i_stop="37138" i_length="92">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37139" g_stop="37248" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="246" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37249" i_stop="37322" i_length="74">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37323" g_stop="37383" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="307" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37384" i_stop="37803" i_length="420">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37804" g_stop="38000" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="504" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38001" i_stop="38070" i_length="70">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38071" g_stop="38081" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="515" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E271150" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36911" e_stop="37046"/>
          <exon e_start="37139" e_stop="37248"/>
          <exon e_start="37323" e_stop="37383"/>
          <exon e_start="37804" e_stop="38000"/>
          <exon e_start="38071" e_stop="38081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTTGATTGTATCTGCTGTGTTTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAGGTTTTGTGTTTCAACTTTTTCGCTATGATGGATTACATTGTCAGTATCGTGTTTTTCGCCCTGAGTTTTTTTTTTTTAAAACTGATTTGCAGCTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAGGTTTGTTTACTTGCTATCTTGATGCATAAAAAGGAGATCAAGAAATTAAACAACGGTTGTGCTTTTATTGTCAGATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAGGTTCTATATTAAGCTCTTGCTGATTATCTTTCACTATTTTATGTGTTATAAATGATTCCAGTTAGTTGGGATTAAGTTTTAATCATGTTTGTAAATTTGCTTTAGGTCTAGTGTTTTCTAGTGAAACTAGTTTTTGATATTAGATTGGGACGGGCTTAGATTAGAGTGACATGGACATGGAGGATTCGTATAACTGATTCCGACTTGCTCGGGATTGAGTCATGATTGTTATTGTTGTCGTCTATCTGTACATCTATTTTTCATTCCCCCCTTCCCAATTAGTTGGTGATAAAATAATACTCAGCTGATTTTCGGACGTGTAAATGGAAAGAAGAATAATATTGCCATGATCCTGTTGAAGTTAGAATTCAGGAATTCAGGTGTTTTTCTAATGGTACTGACTTGTTTAGTATGTTTTAGAGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATGGCAAGTGACTTTCGGTTCATTGTTTTATTTCGGTCATCTTCAAGACTAATAAAGCTCTGTCATGCTAAAGGTTGCAGAGCA</genome_strand>
        <mrna_strand>TTTTTCTTTGATTGTATCTGCTGTGTTTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAG............................................................................................CTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAG..........................................................................ATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAAGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATG......................................................................GTTGCAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746169" ref_strand="+" ref_description="SGN-E746169 [GI|47104885]">
      <seq>gattgtatctgctgtgtttttgtacagtacaaaaattgtgactgaaaaatggtgaaaaaacaagtaatgctgccggcgaatgaagtagaccttactgccgtcgaatatttacccgaaaaaattgaagctccacatttgacggggttttggttcaagttgtttgttaaagtaatcgaggcacctgtaattggttcttttattgctagtcatctgaaggagaagaatgggattactgagattctgaagaatactgtgataccagaggttcccatgttcattccccagttccctcttcaagagcaagagcctggtgttgtttgcttaggagaagatggaaaacctaaagaacaggttgatttagcatttaagtatcttccacattatgatcctgcttgtagatggagttctgattcaggagaatcatcccaattccgctgctggaaaattcgtgattatgaatatgcatacagaaataagcttacgaccccatccatggttgcagagcactttatctcagcaatggaggtatttaatagtaagcagccatcagcaccattattgatctcatttgaccccgaggaagtgagaaggcaagcggcagcttccactcaaagatttgagaaaggaaaacaactgtcaatcttggaagggattttcattgcagtcaaggatgacattgattgctatcctcatccttcaaaaggtggttctaaatggtttcatgaggttcgccaggtgaaggcagatggggttcctgtgtcaagattacgaaacaatggtgcaattttagtaggaaagacaaatatgcatgagtttggtatgggcacaacaggaaataatccaaattatggtacacctagaaatccgcataatccaaaaaggtacacaggtggttcttcctcaggttcagctgcaattgtcgcttctggattgtgctcagcagcattgggaacagatgctggaggttcagtacgaattcctgcttctctttgcggggttgtgggcttaaaaacaacatttggacggactgacctgacagggtctttgtgggaagcaggaactgtcacaattattggacccatcacagctactgttgaggatgccatacttgtgtatgcagcaatctcgggatcctctccaactgatcgaattcagctgaatccttccatccctaattttcccgatttatcttccagtgagagttcaaatatcttgggatcacttaccttgggaaagtatacaaagtggtttaacgatgttagctcgaccgacatatctgataagtgtgaagatgtcctaaaccaactatttcgtcggtatgggtgcaaaacaacagagattgtcataccggagcttcgtgagctgcgcacagctcatactgttacttttggatctgaatcactgtcctttttgaatcctgattgcgaggctgggaaaggagttagattgactaatgacactcgcacaaatctggcacttttcagatcatttgcagcatctgactatatatctgcccagtgtcttaggcgaaggataatgtactaccatatggagattttcaagaaagtagatgtcattgtaacacctaccactggaatgacagccccagaaattccagaaagtgctcttgcagttggagagacaaatttgcaagttgtagcaagactaatgcaatttgctatgacagcaaatgttcttggacttccggcaatttctgtccctattggtcatgataagcaaggacttccaataggcttgcaacttattggtcgtccgtggtgtgaagcttcaatcttgcgtttagctgttgcagttgaggaaatgtctgcagagtataggaagaagccagtggagttctatgacatcttgaaagggaacggttttcacgactccactgaggaataagttttaagcctaacctcaaagagaaaacaagattttatcacagtgtgcttagcgtttttgtgttttgtatctcttttaaaatagcagttaaatttcttttttggccatgaaactcacgcacatcttgtttgtataactttgttcttaattaaaggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="36620" stop="48943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36920" g_stop="37046" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37047" i_stop="37138" i_length="92">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37139" g_stop="37248" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="237" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37249" i_stop="37322" i_length="74">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37323" g_stop="37383" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="298" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37384" i_stop="37803" i_length="420">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37804" g_stop="38000" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="495" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38001" i_stop="38070" i_length="70">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38071" g_stop="38200" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="625" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38201" i_stop="38437" i_length="237">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.387" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38438" g_stop="38515" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="703" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38516" i_stop="38595" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38596" g_stop="38743" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="851" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38744" i_stop="42688" i_length="3945">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.271" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="42689" g_stop="42801" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="852" r_stop="964" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="42802" i_stop="42886" i_length="85">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="42887" g_stop="42962" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="1040" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="42963" i_stop="43909" i_length="947">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="43910" g_stop="43981" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1041" r_stop="1112" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="43982" i_stop="44438" i_length="457">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="44439" g_stop="44490" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1113" r_stop="1164" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="44491" i_stop="45081" i_length="591">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="45082" g_stop="45162" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1165" r_stop="1245" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="45163" i_stop="45246" i_length="84">
            <donor d_prob="0.489" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="45247" g_stop="45330" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1246" r_stop="1329" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="45331" i_stop="45496" i_length="166">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="45497" g_stop="45600" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1330" r_stop="1433" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="45601" i_stop="45684" i_length="84">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="45685" g_stop="45777" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1434" r_stop="1526" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="45778" i_stop="46659" i_length="882">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="46660" g_stop="46728" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1527" r_stop="1595" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="46729" i_stop="47325" i_length="597">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="47326" g_stop="47390" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1596" r_stop="1660" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="47391" i_stop="47748" i_length="358">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="47749" g_stop="47810" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1661" r_stop="1722" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="18">
          <gDNA_intron_boundary i_start="47811" i_stop="48223" i_length="413">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="19">
          <gDNA_exon_boundary g_start="48224" g_stop="48319" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1723" r_stop="1818" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="19">
          <gDNA_intron_boundary i_start="48320" i_stop="48405" i_length="86">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="20">
          <gDNA_exon_boundary g_start="48406" g_stop="48642" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1819" r_stop="2055" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2061" polyA_stop="2075"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E746169" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2055</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36920" e_stop="37046"/>
          <exon e_start="37139" e_stop="37248"/>
          <exon e_start="37323" e_stop="37383"/>
          <exon e_start="37804" e_stop="38000"/>
          <exon e_start="38071" e_stop="38200"/>
          <exon e_start="38438" e_stop="38515"/>
          <exon e_start="38596" e_stop="38743"/>
          <exon e_start="42689" e_stop="42801"/>
          <exon e_start="42887" e_stop="42962"/>
          <exon e_start="43910" e_stop="43981"/>
          <exon e_start="44439" e_stop="44490"/>
          <exon e_start="45082" e_stop="45162"/>
          <exon e_start="45247" e_stop="45330"/>
          <exon e_start="45497" e_stop="45600"/>
          <exon e_start="45685" e_stop="45777"/>
          <exon e_start="46660" e_stop="46728"/>
          <exon e_start="47326" e_stop="47390"/>
          <exon e_start="47749" e_stop="47810"/>
          <exon e_start="48224" e_stop="48319"/>
          <exon e_start="48406" e_stop="48642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTATCTGCTGTGTTTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAGGTTTTGTGTTTCAACTTTTTCGCTATGATGGATTACATTGTCAGTATCGTGTTTTTCGCCCTGAGTTTTTTTTTTTTAAAACTGATTTGCAGCTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAGGTTTGTTTACTTGCTATCTTGATGCATAAAAAGGAGATCAAGAAATTAAACAACGGTTGTGCTTTTATTGTCAGATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAGGTTCTATATTAAGCTCTTGCTGATTATCTTTCACTATTTTATGTGTTATAAATGATTCCAGTTAGTTGGGATTAAGTTTTAATCATGTTTGTAAATTTGCTTTAGGTCTAGTGTTTTCTAGTGAAACTAGTTTTTGATATTAGATTGGGACGGGCTTAGATTAGAGTGACATGGACATGGAGGATTCGTATAACTGATTCCGACTTGCTCGGGATTGAGTCATGATTGTTATTGTTGTCGTCTATCTGTACATCTATTTTTCATTCCCCCCTTCCCAATTAGTTGGTGATAAAATAATACTCAGCTGATTTTCGGACGTGTAAATGGAAAGAAGAATAATATTGCCATGATCCTGTTGAAGTTAGAATTCAGGAATTCAGGTGTTTTTCTAATGGTACTGACTTGTTTAGTATGTTTTAGAGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATGGCAAGTGACTTTCGGTTCATTGTTTTATTTCGGTCATCTTCAAGACTAATAAAGCTCTGTCATGCTAAAGGTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGACCCCGAGGAAGTGAGAAGGCAAGCGGCAGCTTCCACTCAAAGATTTGAGAAAGGTATTTTTATTTGTTGATGTGCATAAAGTTGGATCTTGCAAGGACCTACATATGCAATTCACAATTTGTCTTTTCTTTTTCTCTAAGTTTTCAGCACACGGCATCAAATAAATGATATTAGATTCCTGCAAATAATTCTTATCTCAAAGACTCAAACTACTGTGCCAAGTCTGCTGATTTTGTTACTAAACCGTATTCCCTTTCATCTTTTTTTTCTTTAATGATGTGGTCATGGAGGAAAACAACTGTCAATCTTGGAAGGGATTTTCATTGCAGTCAAGGATGACATTGATTGCTATCCTCATCCTTCAAAAGGTATTTGTTTAACTTCATATTTCCTCGGTAAATATCTCTGCCTTTTTTGGCTGAACATTTCTCCCTGTAAAAAAGTGCAGGTGGTTCTAAATGGTTTCATGAGGTTCGCCAGGTGAAGGCAGATGGGGTTCCTGTGTCAAGATTACGAAACAATGGTGCAATTTTAGTAGGAAAGACAAATATGCATGAGTTTGGTATGGGCACAACAGGAAATAATCCAAATTATGGGTAAACTTGTTTCCTTGAACCCACATGTTGGAAAAATGATTTCCAACACAAATAGCAAATATGACTATTTTTTAAAGATATATGCTAAATATTGGCTTTGTGAATGTTGAAGAAGGACTTCACAATTAACAGGAGTATGCTAAAGACGTCCCTCAAAAGAATACTTTTTTGATTTCTCTATCTTCCTTTCTGTTTCAATTTTGATCTTTCTGTGACTGAGTTGTCACGACCGGAATCTAGACCCCAGACGAGACCGGCGTCGTTGACCTCTCAGAGGTCGCAGACAAGCCTGCTTATGTCATTCTTACTTTACATAGATTAATTTTAGCGGAAAATTTGAAATTTTTGATTCTTTAATCATACTTGCTGAACATTCTTAACATTTCGTAATCGTTCATCATCAACCATCTAACATTTAAGAGATAAGCAACTGAAAGAAATAATTCATTAAGTATTAATTGTATATCGGCCAAAATAGCACCAATACAAAGTTTGAACCAAAACAGGAAAGAAACGCTAGTGGAACATGTTCCGCTAGCTCAACTCTAAAACTACGCTAGAATGTAAAACAGTAGCATCCTCGAAAGCATGAGGACCTACCAAACTCCGGATGAATACTGATGTCCGGATAGCTGCAACAACGAACCTGTAGCTCTAGCGTCCACCTGTGCCTGCACCTAAAAATAGATGTTCGTATGGAATTAGTACACACTTGTACTAAGTATGAGTATATGCAAGTACACACCAGGGACATGCATGAGGAAGAATAGCTCTTTCCTAACAACATGATTTTTGGAAGTCAAGTCAGTGGACTTGCCAAATTGAGATTGGGAAAGTTATGCCATGAGAGTGACATGCATCATTATAATTATCGTATAGCACACAAAACATAACATATTCATATAACACATAACATATAACACATACTTTCTTTCATATTATTCATTCGTATACCATGAGACCTTATTATCATAGACTTAACTTTAAGACTTTCCAAAATGAGGGCTCAACATATGAGACCTCAACTAGGGAGCCTTCTTTAGCAAACACAGAGTCTGCTTCACTCATTCATTCGTATTTCATTTCAATTCATTCATAGGCCAGTGCGAACACCAGCTATACCTAGGATGTAGTTTAAGACTTTCATCGGGTTTGCTGTGCAATGATCAGGAATGACCTAATGTCATTACCTGAATCTAGCTCACCTCTTGATTATCCTATCCTAACACCTTCGGTATCATTCATTTCTTTATATGATTCATTTGAGGCTGGCCTCATTCATTCATTGGGAACTTTAACTTTAACCGACATAGATCATGTGAGCATCATGAAATCCAGTGTCTTCCCCACACCGAAAAGAGGTGGAATCACCGGCCAAAGCGATTCAAATAACATGCTAGCGTATATGGGAATTTAACCCCGCCAGATCCCTATAGTGGCAATATAGGTTCAAAGACTAGGAGATGTGTGGAGACCCATACCCGGCAAGCCGGACAGTCTCATCTCATGAGAATTACGTGAACCTCCGCCCTTCCCGAAAGAAGGCATCACCACTCATAGCTAGCCTATCGGTGCTCGGTATAAAGTTCCATTACATGCAACTCATACATCATAGAAGTTTGCTTCTAGTATGAAGACATCATAGCTCAATAGATGATTTCTCATCTCATCATTAGTATTAAGTGTTTTAAACTCAATATTTTTATTAGAGTATTCATAGAGACTGGTCTCTTCATTATCTTACACTCTCATTGGTGAGTATGTATCGGTAACATTTACTTAAGCTTATTTAAGATTGCTCTCATCATACGCATTAACCTCACATCATGATTGTCGCCACATTCTTCATTTCATTACGTATATCTTAGGTTCACTTATTCTTGAACGTATGTTAAACTTATATATCTATACATACAAGCCATGAGGCTTCATTTATAGTTCGTTAAGTGAATTCTTGTTTTTCTAAGATTATGTATTACAAGACTTATGTATCTTGTATATATGCCAAGATCTTTGATTTTTGATCTACGTAGATGACATTATTCTTGAATATTTCACTCACGTATGACTTATGTATCAATACGGAGGTTTGGACACGAGAACCCAAATTTTGAATTATTTGGATATCATTTATATTTTTCATTGATTTTTGTTCTAATATTCATAAATTTAGAACTCTAAGTTAAGTCTCAACATTTTCGTGAAATAATAAATTTTCTATTTTAATTAGAATTCTAAATTAAATTTCAATCATTTACATGAAAGAATAATTTTCTAATTTAATTAGAATTCCAATTTAAATCTCAATATTTACATAAAAGAATTAATATTCTATTTTTAATTAAAATTCTAAATTAAATCTCAATGTTTACATAAGAGAATTAATTTTCCAACTTTAATTAGAATTTTAATTTACTATTATTATTATTTTTAATTAAATTCGCTTGAATAGGGAGGTTGTGGGTTCGAACCCCCACAGCCCCCTTATTTTTCCTCTCATTTTCGCTGAAGAGGAGGCTGTGAGGTGGTGGGTTCGAACCCCCACAGCCCCTCTATTTCTTTTTTAATTCTTTGACATCCAAAAATTTCCAGATTCTTTTTAAACCTATTTCTATGTTTTTGGAAATTTATTCCACTATTTTTTCTGCACTTTTTCATCAAGTTTCACATTAGTTCTTAGGGAGATTTCATGGTTCATTCACTTCACTATGCTTCATCAAAATGAACATCACATTGCACACCCATTTCACACATAAAATACATGATAAATAAACAACTTATATACCCCAAAACAATGCCTAAAACACTGCCCTATACACACCCATACATCAACTTTTTCCGGTCATATTCTGATGATCATTATCGCGATTTCCCGCACATAAACACACTCATATTTAATTTAAACACATCATTCATGCAAAAATCTAGCAGCACAACATACCCATCCTACAAATTCATTAGGGAGCTAAGGACAAGGACATACGAAGGGGAACAACCTTAGTTTCAAGAGTTTAAGAAACGTCCGAAAGAAAGTACTCTTGGAGAAAGAATTCCATGAGAGAAACTCATACCTTAATCGATGTTCAAACTTTAATGTTGCTGCCCGGAAAACTCCTCCAAACCACTCCCAATTCACTTCAAAGTATACCTCTCTTAGCCTTGACGTTTTGATTACTTTTTCTTTTGCTTAAAAAAATTTTTTGTGAGTTCTTCAAGCATGAAAATTATTGATATTTTGGCAGAAATAATGTGAGGAAGATGGAGAACGTGAGAGAGGGAGTTTAGAAGCGTGAGAGAGAGAGGGCTAATTGGATTAGGAGACTAATTCAAGAATTAGTCAAATAACATTAAAATAAATAAATACAAATCTGTTTTATTTATTTATTTATTTATTCATTTAAAACGTGAAAGGACAATTATGCCCTTAAATACCTATTTATTCTTATTTACATAATTCTCTTTTTTTTTGAATCGTTACATGAGTATTGGATGTTCTGTTGTAGTCATTTAAGGTTCACCAGAGTGGTTTATTCCTAGTTCATTCTTCTTGATCAAGAGAGGTTGTCGGGTGGTGTTCTTTTGGCTGTTATGTGATCATTGCCACATTTTGACTCATTTAACTGCAGAATAGTAATACTTTTGTTTCCCTACATCTCTTTTGAATGATGATTCTTTACTTAAGCTACATATTTCAACATGTCTAATAAAAATGTTGTCCAGTCCAGTTATTATATTTTTGTAGTCTTTTTCCTTTGGTTGAGTGACTGAGAGTCTTGCTTGAGTTAATATTTGACAAGTCACTCATACAGACCGCTTTAGATATCTTTCCTTGTTCTCGGAATATAATTTTTTGAAGTGTATCTGGGAACTATTGTTTCTTGGGTATCTTTAGGTTGAGTGTATATTTTACCTTCCACGGCAGTAATGAGCATTTTTCTATGGCAGTACACCTAGAAATCCGCATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAGGTTGTATGACATATTGGGCGTAGTGAATTACTAATTTGTTTTAAAATGGTTATAGATTTTCAAGATTCATTCATTTGAAGTCCAGGTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGGGTAAGTTCATGAATGGCAGGTCAATGTGCATCTCAACCTTAGGCTTATGAATTATATTGTTCCCTTCAGGAAAACTTTCTGTCTGCTGTCAAAGCTATGATCTTCATACAACTTGCCTCCCTCGTACTCTAGCCTAAAAATTGTTCTTCTCTTTAGTTATCCCTATTTTCTGGATTCTTAAAGTCTCTATGTTAACATGTATTCTTCAATAGCTGTAAAGGGCATTTTTCATTTCGCTTGTGGATAAGTGAAACAATCATTATAAACCTAAAACTGTGTGTAAGGCATGTAATCAAGTATATTTTTTGTAGGCTATAGTTAAACTCAAAAGCATTATTTCTCAGGCACTTCATGGTATTAGAAATAAGGTAGCTTTGTAGAGAAGTGAAGCCTTTTACTGCAGTGGTTTATAACTCTATTCTGCACATTGCTTAGAAATGTAATCAAAGAAGAGCCCTATACGCTTTCTACACACACTGCTTACATTATCCATACCGTGATACGACAGCAAAGGAGACACCGTGTACATGCACTACTTACAATCTTGCAGATCCATCAATAATTCAGGATTAAGGTATCGGTGAAAAAAAGAAAAGTCTTGGTTTTCTGTTCTTTCATTACAGAATCCAAAAACAAGTAAATAACAATGATCTTCATGTCCTGTGAATGCTATTTGAGTGCGCACTGAAGCAAGCTAATTTTTTCTTACAAATTTTGGTCAGATGACTTTTTTTTGTATGCATGAACATGGAGAGTGATTTTTCATCTAGTCATGTCCAAGAAGCTAGATGCTAAAAGAAATAATATTAAGTTCATTTTATGTTGTGATATGTTTCATTTTGGCCATTGTCAATGATACTAGAATGAACTCCCATACACTTAGCAGAGATTGCATGTTGCAACGGTAGATATGTGTATAATTTTGTCCAATTCTGTTCTTTTCTCAGGTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGTGTTAGTAATTGGGTTTACTGCCCATTTCCTTACAAACAAATAGTCAATTCTGGTCATGAAAATCTCTGGTATTCATCTTAGTATCTTACTGTGTACAGTCAACCATGGATTTTTTATTTACCTCTTTGACTTGATTACAAGTGCACGTAAAATTATTTAGGTGTTGCACTGTTTACACACTGCATCAATTTCATCTACCTTTATGTGAGCTAAAACAACAGTAAAGAACTTACAACAAGAACAACATTCACAGTACAGTCCCACAAATGGGTCCGAGGAGGCTGGGGTGTACGCAGACCTTGTAAACATAGATCAATTAGGTTGTATATATATTTTTAAAAATAGGTTGTATGTTGGGGATCTTTTTGTTAAATTTGGTCCAGGTATCTTGATCATGGTGATAACCACTCTTATGGTTGATATGTTGATTATTGCTATTTTTCTTACAACTTTTCAGGTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCTGTAATCACTCACATAGTGTACTTTTGCTAAATTTCAAGATATTGTTCTGTTTGAGTGTTCAGTTTTAACCTTTTTTTTCCCTTCATTCGTGGAAATACTTAAAGTTAATATTAGTAAATAGAGTATCAGATCATTTTTTAACGTTGAGTTTGATCATCTGTGATACTGAAGTATGTTGGTTACCATAATAACTCAAGTTTGGGGTATTTTTCTTCAGAATTCTGATCCTGGTTCAGTTTGGAGGATGTTTATTCTGCTGAATGTCCCATTGTTCCTGTTTTTATAAATTCTGCAGTATTCACTCTACTTGTTATCATAAAAGATTATGAGGACTATTTTAGTTAAATTGCTGAAAGAAATTGTGACATTTCTCTGTCCATTATAACCTTGCTGTTTTAGGTCCCCCCAAACGGATTTGGTATAGCTAAACAAGACCAAGCTTAAGCATAGGATTAAGTTGATCCTATACTTGTACTGGAGACTGTTGAATTCGGTTCAATGCCAAATGAGTTCTTTTCATTGGATTAAAAAGTTGTACTCTTCATTACGCATGCTGTTTTCTACTCACATTGTTACTGATTGATTTTGCAGTCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAGGTGTTGCACTTCTATTCTCTTAAGGTTGTTGATGATTTTAACCCTCTTGGTTGAGCTTTGGCTGATATAAGACATGTTTTACAGTGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAAGTAAGTCCAGTACTCTTTATTACGTATGTGATCAATTCTGTCAGACTCATGCTTTTTACATCAAGATTTGTCTATTTCAGAAGACTTCATGTTTGAAGTTCAGGTTCACTTTTCTGGATTTAATTTTGTTTATTCTATTTTTCTGGCTTAACTCTTTGCAATCAAGACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGGGTATTATTTTCCATCATGCTATTAGTACGACTGCTTGGTATGTTGTTTTCTGGACTAATATAGAATTTCTTTCATTTTATGTAGGAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGACTATATATCTGCCCAGTGTCTTAGGTAAAGCATTAGTTACTAAATTACTTTCATACATGTCGAAATGATTTGTTCAACTGTTGTTTGTTAAAGTATCAAATTAGGGATGTGAAAGCTGCAGCAAGTGTATTCTGGATCATTGGCATTTTTATTTTGAACATTTGGTTCGACATTTAGTAGGCATTCCTAGCGTTAACTACATCAACGATTTTAGGTTTACTTACTTCACTATAAGCTCGTTGTGTGTAAAATCATTAGAAAGTTACCTGAGATTCCCTCCGTCCACTTTTAATTGTCATGGTTTCTATTTTTAGAGTCAAACTAACATTTTAAGATGTATTGTTTCATCATATTAATATGCAAAAAATTGTAATTTATAGTACTTTTCATATAGTTTTTGAATATCTAATTTAAAATATCGAATTAACTAATCTAATTTAACTTTGAAAATTAGTCAAATTGACTTTTGAAAAGCGCAACATGACAAATAAAAGTGGACGGATGGAGTATTAAATTTTCAGTTGGAGGAAAGATATGCTCATATGGAGTATGAAATTTTCAGTTGGAGGAAAGATATGCTCATATGGAGTATTAAATTTTCAGTTGGAGGAAAGATATGCTCATAGCTTGTGCACAGAAACAAATTTATACTCCAATAGAAGAGCATGTCAGAATCCATGTTCTTGTCATTAATATCATGGTTTCTTTACTCCATAGTTACTTTGCGTCTCGGAAGTGTCATTGAATGGTTCTTTTTGTCTATGTTTTGGAAAAATGTCAAGTGCCAAATGTACTACTATGTTTTCTTTAAATGTTAAAAGATTTCAGTCTTGCTATGGAATTGCATGTAGAAATATGATGAAGTCTATTCAATTTATTTCAGCTTTCCCGTGTCTCTTATTGCAGGCGAAGGATAATGTACTACCATATGGAGATTTTCAAGAAAGTAGATGTCATTGTAACACCTACCACTGGGTAAACTAATTTCTGGCAACTGTTTTCCTTAAATCTTTTAGTTGATGGGAGTATCATGAAGTGGGTTTCTGAAATAGTTATGTTAAAAGAGAAGTAGAATTTTCTGAAGTCATCTAGCGATATTTGACATAAGATTGTACTTCAATGGAAGTCAATTTTAGATGATTGGTGCAAAATAGGAACTATATGTTTCTTTTTACTTCACGTGGATAATGCTTAATCAGTGAATGACTCTACAAGAGTATTGAGGATAAGGATACTTCTCATGTCTTTGAAGTTGTACACCATAATTTAGCTTGACGCTTGAAGTCACATTTGTCTGATGTTATGATCCACAGAAGATTTCCGTTGAATACCTCACTCGCGAAATTTACACATCGAATGGACATGTATATGTTCATGTAGAATGACCTATACTGAGGCTTTTTACCATTTCGCAGAATTTTAATTTTTTTCCCAAGTAAATTAGATCTTCCTCTTTTTTCAACTGAAGTAGATGGACCAAGGGTTTTTGTACGTGGTCATTTATTTGAATCTTTATGTGGACCCACAGACTCTTAAATCCATAAATTTTCTATTTTTACTTTTTTTTTTCAGAATGACAGCCCCAGAAATTCCAGAAAGTGCTCTTGCAGTTGGAGAGACAAATTTGCAAGTTGTAGGTAGGTTAACATCTGTTTCTATTTTTTTTTTTAAATTATCATTTACAAATAAAGGAACATCATTTATTACTTTGTAGTAGTCATTAGTAGTCCCTGGATATATTAAAAATGAGAATGCTATGCTATTTCACGAGAAATCTTATAAATAAAATATTTGATGTTTGACCGGTTGGTAGATTCAGAAATTTGATTTTTGTATGCATTAAAGACAGATTGTACTTTGGTAGTTAAACTCCTGAAGCGTTCTGTCTCAAAATATTATCAATTCTACAATAGTTCTTTTTTTTTTTGTTATGATGAGCAGCACCTCATGATGATCTGACTCTATTTAGACTAATTTCATTTGCTACTCTTTCAGCAAGACTAATGCAATTTGCTATGACAGCAAATGTTCTTGGACTTCCGGCAATTTCTGTCCCTGTAAGTTATATTCATCTTTTTCCTCTTAGGCAGTTATCTGAGAGTAAATCTCATTGAAGGATATGGAATAGAAGGACAAGAACCTGCATGTTGATAATATACAATCAGTGCTCCTATTCTAAGCATTTCAACTGTTGGTTCTTACTGCATGCTGGTTTACTGTCGAGGACCTGCTCACCTTCTTTCCAATTAATATTGACACAGCAGTAAAAATGAATGACTGAAAACTCTCTCTCTTTACAACTTCCTCCATTTGTATTTGCACAGCCTATGTTCGTTCCCTTCAAAACTAAGATGTCTCTTTGATTGATGGCTACCACCATCGGATTCCAAAACTCGTGGATGTCAAATATCACTCAACATCACGTGTTTTTTAACTATATTATTGATTTACTTTTCTTTTCACGTGTTAGATTGGTCATGATAAGCAAGGACTTCCAATAGGCTTGCAACTTATTGGTCGTCCGTGGTGTGAAGCTTCAATCTTGCGTTTAGCTGTTGCAGTTGAGGTATTCTCCTCGCCCCAACTAACAAGTAACAAACTGCTAAAATGTTCAAAAAGCATTGGAATGAGATTTTGACTTTGTGTTTTCAGGAAATGTCTGCAGAATATAGGAAGAAGCCAGTGGAGTTCTATGACATCTTGAAAGGGAACGGTTTTCACGACTCCACTGAGGAATAAGTTTTAAGCCTAACCTCAAAGAGAAAACAAGATTTTATCACAGTGTGCTTAGCGTTTTTGTGTTTTGTATCTCTTTTAAAATAGCAGTTAAATTTCTTTTTTGGCCATGAAACTCACGCACATCTTGTTTGTATAACTTTGTTCTTAATT</genome_strand>
        <mrna_strand>GATTGTATCTGCTGTGTTTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAG............................................................................................CTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAG..........................................................................ATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTTGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATG......................................................................GTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGACCCCGAGGAAGTGAGAAGGCAAGCGGCAGCTTCCACTCAAAGATTTGAGAAAG.............................................................................................................................................................................................................................................GAAAACAACTGTCAATCTTGGAAGGGATTTTCATTGCAGTCAAGGATGACATTGATTGCTATCCTCATCCTTCAAAAG................................................................................GTGGTTCTAAATGGTTTCATGAGGTTCGCCAGGTGAAGGCAGATGGGGTTCCTGTGTCAAGATTACGAAACAATGGTGCAATTTTAGTAGGAAAGACAAATATGCATGAGTTTGGTATGGGCACAACAGGAAATAATCCAAATTATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACCTAGAAATCCGCATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAG.....................................................................................GTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAG....................................................................................TGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAA......................................................................................................................................................................ACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGG....................................................................................GAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGACTATATATCTGCCCAGTGTCTTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAGGATAATGTACTACCATATGGAGATTTTCAAGAAAGTAGATGTCATTGTAACACCTACCACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACAGCCCCAGAAATTCCAGAAAGTGCTCTTGCAGTTGGAGAGACAAATTTGCAAGTTGTAG......................................................................................................................................................................................................................................................................................................................................................................CAAGACTAATGCAATTTGCTATGACAGCAAATGTTCTTGGACTTCCGGCAATTTCTGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTCATGATAAGCAAGGACTTCCAATAGGCTTGCAACTTATTGGTCGTCCGTGGTGTGAAGCTTCAATCTTGCGTTTAGCTGTTGCAGTTGAG......................................................................................GAAATGTCTGCAGAGTATAGGAAGAAGCCAGTGGAGTTCTATGACATCTTGAAAGGGAACGGTTTTCACGACTCCACTGAGGAATAAGTTTTAAGCCTAACCTCAAAGAGAAAACAAGATTTTATCACAGTGTGCTTAGCGTTTTTGTGTTTTGTATCTCTTTTAAAATAGCAGTTAAATTTCTTTTTTGGCCATGAAACTCACGCACATCTTGTTTGTATAACTTTGTTCTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367804" ref_strand="+" ref_description="SGN-E367804 [cLPT-14-L6]">
      <seq>gtttttgtacagttcaaaaattgtgactgaaaaatggggaaaaaacaagtaatgttgccggcgaatgaagtagaccttactgcagtcgaatatgtgcccgaaaaaattgaagctccacatttgacggggttttggttcaagttgtttgttaaagtaatggaggcacctgtaattggttcttttattgctagtcatctgaaggagaagaatgggattactgagattctgaagaatactgtgataccagaggttcccatgttcattccccaggtccctcttcaagagcaagagcctggtgttgtttgcttatgagaagatggaaaacataaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="36635" stop="38153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36935" g_stop="37046" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37047" i_stop="37138" i_length="92">
            <donor d_prob="0.796" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37139" g_stop="37248" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="222" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37249" i_stop="37322" i_length="74">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37323" g_stop="37383" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="283" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37384" i_stop="37803" i_length="420">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37804" g_stop="37853" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="333" r_length="50" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E367804" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36935" e_stop="37046"/>
          <exon e_start="37139" e_stop="37248"/>
          <exon e_start="37323" e_stop="37383"/>
          <exon e_start="37804" e_stop="37853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAGGTTTTGTGTTTCAACTTTTTCGCTATGATGGATTACATTGTCAGTATCGTGTTTTTCGCCCTGAGTTTTTTTTTTTTAAAACTGATTTGCAGCTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAGGTTTGTTTACTTGCTATCTTGATGCATAAAAAGGAGATCAAGAAATTAAACAACGGTTGTGCTTTTATTGTCAGATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAGGTTCTATATTAAGCTCTTGCTGATTATCTTTCACTATTTTATGTGTTATAAATGATTCCAGTTAGTTGGGATTAAGTTTTAATCATGTTTGTAAATTTGCTTTAGGTCTAGTGTTTTCTAGTGAAACTAGTTTTTGATATTAGATTGGGACGGGCTTAGATTAGAGTGACATGGACATGGAGGATTCGTATAACTGATTCCGACTTGCTCGGGATTGAGTCATGATTGTTATTGTTGTCGTCTATCTGTACATCTATTTTTCATTCCCCCCTTCCCAATTAGTTGGTGATAAAATAATACTCAGCTGATTTTCGGACGTGTAAATGGAAAGAAGAATAATATTGCCATGATCCTGTTGAAGTTAGAATTCAGGAATTCAGGTGTTTTTCTAATGGTACTGACTTGTTTAGTATGTTTTAGAGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAA</genome_strand>
        <mrna_strand>GTTTTTGTACAGTTCAAAAATTGTGACTGAAAAATGGGGAAAAAACAAGTAATGTTGCCGGCGAATGAAGTAGACCTTACTGCAGTCGAATATGTGCCCGAAAAAATTGAAG............................................................................................CTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATGGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAG..........................................................................ATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGGTCCCTCTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGAGCCTGGTGTTGTTTGCTTATGAGAAGATGGAAAACATAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332091" ref_strand="+" ref_description="SGN-E332091 [cTOD-16-E2]">
      <seq>tttttgtacagtacaaaaattgtgactgaaaaatggtgaaaaaacaagtaatgctgccggcgaatgaagtagaccttactgccgtcgaatatttacccgaaaaaattgaagctccacatttgacggggttttggttcaagttgtttgttaaagtaatcgaggcacctgtaattggttcttttattgctagtcatctgaaggagaagaatgggattactgagattctgaagaatactgtgataccagaggttcccatgttcattccccagttccctcttcaagagcaagagcctggtgttgtttgcttaggagaagatggaaaacctaaagaacaggttgatttagcatttaagtatcttccacattatgatcctgctagtagatggagttctgattcaggagaatcatcccaattccgctgctggaaaattcgtgattatgaatatgcatacagaaataagcttacgaccccatccatggttgcagagcactttatctcagcaatggaggtatttaatagtaagcagccatcagcaccattattgatctcatttgaccccgaggaagtgagaaggcaagcggcagcttccactcaaagatttgagaaaggaaaacactgtcaatcttggaagggatttcattgcagtcaaggatgacattgattgctatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="36636" stop="38802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36936" g_stop="37046" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37047" i_stop="37138" i_length="92">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37139" g_stop="37248" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="221" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37249" i_stop="37322" i_length="74">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37323" g_stop="37383" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="282" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37384" i_stop="37803" i_length="420">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37804" g_stop="38000" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="479" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38001" i_stop="38070" i_length="70">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38071" g_stop="38200" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="609" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38201" i_stop="38437" i_length="237">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.387" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38438" g_stop="38502" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="672" r_length="63" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E332091" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36936" e_stop="37046"/>
          <exon e_start="37139" e_stop="37248"/>
          <exon e_start="37323" e_stop="37383"/>
          <exon e_start="37804" e_stop="38000"/>
          <exon e_start="38071" e_stop="38200"/>
          <exon e_start="38438" e_stop="38502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAGGTTTTGTGTTTCAACTTTTTCGCTATGATGGATTACATTGTCAGTATCGTGTTTTTCGCCCTGAGTTTTTTTTTTTTAAAACTGATTTGCAGCTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAGGTTTGTTTACTTGCTATCTTGATGCATAAAAAGGAGATCAAGAAATTAAACAACGGTTGTGCTTTTATTGTCAGATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAGGTTCTATATTAAGCTCTTGCTGATTATCTTTCACTATTTTATGTGTTATAAATGATTCCAGTTAGTTGGGATTAAGTTTTAATCATGTTTGTAAATTTGCTTTAGGTCTAGTGTTTTCTAGTGAAACTAGTTTTTGATATTAGATTGGGACGGGCTTAGATTAGAGTGACATGGACATGGAGGATTCGTATAACTGATTCCGACTTGCTCGGGATTGAGTCATGATTGTTATTGTTGTCGTCTATCTGTACATCTATTTTTCATTCCCCCCTTCCCAATTAGTTGGTGATAAAATAATACTCAGCTGATTTTCGGACGTGTAAATGGAAAGAAGAATAATATTGCCATGATCCTGTTGAAGTTAGAATTCAGGAATTCAGGTGTTTTTCTAATGGTACTGACTTGTTTAGTATGTTTTAGAGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATGGCAAGTGACTTTCGGTTCATTGTTTTATTTCGGTCATCTTCAAGACTAATAAAGCTCTGTCATGCTAAAGGTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGACCCCGAGGAAGTGAGAAGGCAAGCGGCAGCTTCCACTCAAAGATTTGAGAAAGGTATTTTTATTTGTTGATGTGCATAAAGTTGGATCTTGCAAGGACCTACATATGCAATTCACAATTTGTCTTTTCTTTTTCTCTAAGTTTTCAGCACACGGCATCAAATAAATGATATTAGATTCCTGCAAATAATTCTTATCTCAAAGACTCAAACTACTGTGCCAAGTCTGCTGATTTTGTTACTAAACCGTATTCCCTTTCATCTTTTTTTTCTTTAATGATGTGGTCATGGAGGAAAACAACTGTCAATCTTGGAAGGGATTTTCATTGCAGTCAAGGATGACATTGATTGCTATCCT</genome_strand>
        <mrna_strand>TTTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAG............................................................................................CTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAG..........................................................................ATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATG......................................................................GTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGACCCCGAGGAAGTGAGAAGGCAAGCGGCAGCTTCCACTCAAAGATTTGAGAAAG.............................................................................................................................................................................................................................................GAAAAC-ACTGTCAATCTTGGAAGGGA-TTTCATTGCAGTCAAGGATGACATTGATTGCTATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263345" ref_strand="+" ref_description="SGN-E263345 [cLEG-62-B21]">
      <seq>ttttgtacagtacaaaaattgtgactgaaaaatggtgaaaaaacaagtaatgctgccggcgaatgaagtagaccttactgccgtcgaatatttacccgaaaaaattgaagctccacatttgacggggttttggttcaagttgtttgttaaagtaatcgaggcacctgtaattggttcttttattgctagtcatctgaaggagaagaatgggattactgagattctgaagaatactgtgataccagaggttcccatgttcattccccagttccctcttcaagagcaagagcctggtgttgtttgcttaggagaagatggaaaacctaaagaacaggttgatttagcatttaagtatcttccacattatgatcctgctagtagatggagttctgattcaggagaatcatcccaattccgctgctggaaaattcgtgattatgaatatgcatacagaaataagcttacgaccccatccatggttgcagagcactttatctcagcaatggaggtatttaatagtaagcagccatcagcaccattattgatctcatttgaccccgaggaagtgagaaggcaagcggcagcttccactcaaagatttgagaaaggaaaacaactgtcaatcttggaagggattttcattgcagtncaggatgacattgattgctatcctcatccttcaaaggtggttctaaatggtttcatgaggttcgccaggtgaaggcagatgggggttcctgtgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="36637" stop="38954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36937" g_stop="37046" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37047" i_stop="37138" i_length="92">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37139" g_stop="37248" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="220" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37249" i_stop="37322" i_length="74">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37323" g_stop="37383" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="281" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37384" i_stop="37803" i_length="420">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37804" g_stop="38000" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="478" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38001" i_stop="38070" i_length="70">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38071" g_stop="38200" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="608" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38201" i_stop="38437" i_length="237">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.387" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38438" g_stop="38515" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="685" r_length="77" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38516" i_stop="38595" i_length="80">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38596" g_stop="38654" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="745" r_length="60" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E263345" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36937" e_stop="37046"/>
          <exon e_start="37139" e_stop="37248"/>
          <exon e_start="37323" e_stop="37383"/>
          <exon e_start="37804" e_stop="38000"/>
          <exon e_start="38071" e_stop="38200"/>
          <exon e_start="38438" e_stop="38515"/>
          <exon e_start="38596" e_stop="38654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAGGTTTTGTGTTTCAACTTTTTCGCTATGATGGATTACATTGTCAGTATCGTGTTTTTCGCCCTGAGTTTTTTTTTTTTAAAACTGATTTGCAGCTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAGGTTTGTTTACTTGCTATCTTGATGCATAAAAAGGAGATCAAGAAATTAAACAACGGTTGTGCTTTTATTGTCAGATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAGGTTCTATATTAAGCTCTTGCTGATTATCTTTCACTATTTTATGTGTTATAAATGATTCCAGTTAGTTGGGATTAAGTTTTAATCATGTTTGTAAATTTGCTTTAGGTCTAGTGTTTTCTAGTGAAACTAGTTTTTGATATTAGATTGGGACGGGCTTAGATTAGAGTGACATGGACATGGAGGATTCGTATAACTGATTCCGACTTGCTCGGGATTGAGTCATGATTGTTATTGTTGTCGTCTATCTGTACATCTATTTTTCATTCCCCCCTTCCCAATTAGTTGGTGATAAAATAATACTCAGCTGATTTTCGGACGTGTAAATGGAAAGAAGAATAATATTGCCATGATCCTGTTGAAGTTAGAATTCAGGAATTCAGGTGTTTTTCTAATGGTACTGACTTGTTTAGTATGTTTTAGAGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATGGCAAGTGACTTTCGGTTCATTGTTTTATTTCGGTCATCTTCAAGACTAATAAAGCTCTGTCATGCTAAAGGTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGACCCCGAGGAAGTGAGAAGGCAAGCGGCAGCTTCCACTCAAAGATTTGAGAAAGGTATTTTTATTTGTTGATGTGCATAAAGTTGGATCTTGCAAGGACCTACATATGCAATTCACAATTTGTCTTTTCTTTTTCTCTAAGTTTTCAGCACACGGCATCAAATAAATGATATTAGATTCCTGCAAATAATTCTTATCTCAAAGACTCAAACTACTGTGCCAAGTCTGCTGATTTTGTTACTAAACCGTATTCCCTTTCATCTTTTTTTTCTTTAATGATGTGGTCATGGAGGAAAACAACTGTCAATCTTGGAAGGGATTTTCATTGCAGTCAAGGATGACATTGATTGCTATCCTCATCCTTCAAAAGGTATTTGTTTAACTTCATATTTCCTCGGTAAATATCTCTGCCTTTTTTGGCTGAACATTTCTCCCTGTAAAAAAGTGCAGGTGGTTCTAAATGGTTTCATGAGGTTCGCCAGGTGAAGGCAGAT-GGGGTTCCTGTGTCA</genome_strand>
        <mrna_strand>TTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAG............................................................................................CTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAG..........................................................................ATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATG......................................................................GTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGACCCCGAGGAAGTGAGAAGGCAAGCGGCAGCTTCCACTCAAAGATTTGAGAAAG.............................................................................................................................................................................................................................................GAAAACAACTGTCAATCTTGGAAGGGATTTTCATTGCAGTNCAGGATGACATTGATTGCTATCCTCATCCTTC-AAAG................................................................................GTGGTTCTAAATGGTTTCATGAGGTTCGCCAGGTGAAGGCAGATGGGGGTTCCTGTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255231" ref_strand="+" ref_description="SGN-E255231 [cLEG-31-L21]">
      <seq>ttttgtacagtacaaaaattgtgactgaaaaatggtgaaaaaacaagtaatgctgccggcgaatgaagtagaccttactgccgtcgaatatttacccgaaaaaattgaagctccacatttgacggggttttggttcaagttgtttgttaaagtaatcgaggcacctgtaattggttcttttattgctagtcatctgaaggagaagaatgggattactgagattctgaagaatactgtgataccagaggttcccatgttcattccccagttccctcttcaagagcaagagcctggtgttgtttgcttatgagaagatggaaaacctaaagaacaggttgatttagcatttaagtatcttccacattatgatcctgctagtagatggagttctgattcatgagaatcatcccaattccgctgctggaaaattcgtgattatgaatatgcatacagaaataagcttacgaccccatccatggttgcagagcactttatctcagcaatggaggtatttaatagtaagcagccatcagcaccattattgatctcatttgaccccgacgaagtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="36637" stop="38462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36937" g_stop="37046" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37047" i_stop="37138" i_length="92">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37139" g_stop="37248" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="220" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37249" i_stop="37322" i_length="74">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37323" g_stop="37383" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="281" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37384" i_stop="37803" i_length="420">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37804" g_stop="38000" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="478" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38001" i_stop="38070" i_length="70">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38071" g_stop="38162" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="570" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E255231" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36937" e_stop="37046"/>
          <exon e_start="37139" e_stop="37248"/>
          <exon e_start="37323" e_stop="37383"/>
          <exon e_start="37804" e_stop="38000"/>
          <exon e_start="38071" e_stop="38162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAGGTTTTGTGTTTCAACTTTTTCGCTATGATGGATTACATTGTCAGTATCGTGTTTTTCGCCCTGAGTTTTTTTTTTTTAAAACTGATTTGCAGCTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAGGTTTGTTTACTTGCTATCTTGATGCATAAAAAGGAGATCAAGAAATTAAACAACGGTTGTGCTTTTATTGTCAGATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAGGTTCTATATTAAGCTCTTGCTGATTATCTTTCACTATTTTATGTGTTATAAATGATTCCAGTTAGTTGGGATTAAGTTTTAATCATGTTTGTAAATTTGCTTTAGGTCTAGTGTTTTCTAGTGAAACTAGTTTTTGATATTAGATTGGGACGGGCTTAGATTAGAGTGACATGGACATGGAGGATTCGTATAACTGATTCCGACTTGCTCGGGATTGAGTCATGATTGTTATTGTTGTCGTCTATCTGTACATCTATTTTTCATTCCCCCCTTCCCAATTAGTTGGTGATAAAATAATACTCAGCTGATTTTCGGACGTGTAAATGGAAAGAAGAATAATATTGCCATGATCCTGTTGAAGTTAGAATTCAGGAATTCAGGTGTTTTTCTAATGGTACTGACTTGTTTAGTATGTTTTAGAGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATGGCAAGTGACTTTCGGTTCATTGTTTTATTTCGGTCATCTTCAAGACTAATAAAGCTCTGTCATGCTAAAGGTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGACCCCGAGGAAGTGAG</genome_strand>
        <mrna_strand>TTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAG............................................................................................CTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAG..........................................................................ATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGAGCCTGGTGTTGTTTGCTTATGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCATGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATG......................................................................GTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGACCCCGACGAAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314417" ref_strand="+" ref_description="SGN-E314417 [cTOA-21-B20]">
      <seq>ttttgtacagtacaaaaattgtgactgaaaaatggtgaaaaaacaagtaatgctgccggcgaatgaagtagaccttactgccgtcgaatatttacccgaaaaaattgaagctccacatttgacggggttttggttcaagttgtttgttaaagtaatcgaggcacctgtaattggttcttttattgctagtcatctgaaggagaagaatgggattactgagattctgaagaatactgtgataccagaggttcccatgttcattccccagttccctcttcaagagcaagagcctggtgttgtttgcttaggagaagatggaaaacctaaagaacaggttgatttagcatttaagtatcttccacattatgatcctgctagtagatggagttctgattcaggagaatcatcccaattccgctgctggaaaattcgtgattatgaatatgcatacagaaataagcttacgaccccatccatggttgcagagcactttatctcagcaatggaggtatttaatagtaagcagccatcagcaccattattgatctcatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="36637" stop="38447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36937" g_stop="37046" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37047" i_stop="37138" i_length="92">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37139" g_stop="37248" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="220" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37249" i_stop="37322" i_length="74">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37323" g_stop="37383" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="281" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37384" i_stop="37803" i_length="420">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37804" g_stop="38000" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="478" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38001" i_stop="38070" i_length="70">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38071" g_stop="38147" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="555" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E314417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36937" e_stop="37046"/>
          <exon e_start="37139" e_stop="37248"/>
          <exon e_start="37323" e_stop="37383"/>
          <exon e_start="37804" e_stop="38000"/>
          <exon e_start="38071" e_stop="38147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAGGTTTTGTGTTTCAACTTTTTCGCTATGATGGATTACATTGTCAGTATCGTGTTTTTCGCCCTGAGTTTTTTTTTTTTAAAACTGATTTGCAGCTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAGGTTTGTTTACTTGCTATCTTGATGCATAAAAAGGAGATCAAGAAATTAAACAACGGTTGTGCTTTTATTGTCAGATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAGGTTCTATATTAAGCTCTTGCTGATTATCTTTCACTATTTTATGTGTTATAAATGATTCCAGTTAGTTGGGATTAAGTTTTAATCATGTTTGTAAATTTGCTTTAGGTCTAGTGTTTTCTAGTGAAACTAGTTTTTGATATTAGATTGGGACGGGCTTAGATTAGAGTGACATGGACATGGAGGATTCGTATAACTGATTCCGACTTGCTCGGGATTGAGTCATGATTGTTATTGTTGTCGTCTATCTGTACATCTATTTTTCATTCCCCCCTTCCCAATTAGTTGGTGATAAAATAATACTCAGCTGATTTTCGGACGTGTAAATGGAAAGAAGAATAATATTGCCATGATCCTGTTGAAGTTAGAATTCAGGAATTCAGGTGTTTTTCTAATGGTACTGACTTGTTTAGTATGTTTTAGAGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATGGCAAGTGACTTTCGGTTCATTGTTTTATTTCGGTCATCTTCAAGACTAATAAAGCTCTGTCATGCTAAAGGTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGA</genome_strand>
        <mrna_strand>TTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAG............................................................................................CTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAG..........................................................................ATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATG......................................................................GTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708592" ref_strand="+" ref_description="SGN-E708592 [FA36AG06]">
      <seq>catttgacggggttttggttcaagttgtttgttaaagtaatcgaggcacctgtaattggttcttttattgctagtcatctgaaggagaagaatgggattactgagattctgaagaatactgtgataccagaggttcccatgttcattccccagttccctcttcaagagcaagagcctggtgttgtttgcttaggagaagatggaaaacctaaagaacaggttgatttagcatttaagtatcttccacattatgatcctgctagtagatggagttctgattcaggagaatcatcccaattccgctgctggaaaattcgtgattatgaatatgcatacagaaataagcttacgaccccatccatggttgcagagcactttatctcagcaatggaggtatttaatagtaagcagccatcagcaccattattgatctcatttgaccccgaggaagtgagaaggcaagcggcagcttccactcaaagatttgagaaaggaaaacaactgtcaatcttggaagggattttcattgcagtcaaggatgacattgattgctatcctcatccttcaaaaggtggttctaaatggtttcatgaggttcgccaggtgaaggcagatggggttcctgtgtcaagattacgaaacaatggtgcaattttagtaggaaagacaaatatgcatgagtttggtatgggcacaacaggaaataatccaaattatggtacacctagaaatccgcataatccaaaaaggtacacgggtggttcttcctcaggttcagctgcaattgtcgcttctggattgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="36844" stop="43074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37144" g_stop="37248" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37249" i_stop="37322" i_length="74">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37323" g_stop="37383" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="166" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37384" i_stop="37803" i_length="420">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37804" g_stop="38000" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="363" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38001" i_stop="38070" i_length="70">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38071" g_stop="38200" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="493" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38201" i_stop="38437" i_length="237">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.387" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38438" g_stop="38515" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="571" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38516" i_stop="38595" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38596" g_stop="38743" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="719" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38744" i_stop="42688" i_length="3945">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.271" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42689" g_stop="42774" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="805" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E708592" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37144" e_stop="37248"/>
          <exon e_start="37323" e_stop="37383"/>
          <exon e_start="37804" e_stop="38000"/>
          <exon e_start="38071" e_stop="38200"/>
          <exon e_start="38438" e_stop="38515"/>
          <exon e_start="38596" e_stop="38743"/>
          <exon e_start="42689" e_stop="42774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAGGTTTGTTTACTTGCTATCTTGATGCATAAAAAGGAGATCAAGAAATTAAACAACGGTTGTGCTTTTATTGTCAGATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAGGTTCTATATTAAGCTCTTGCTGATTATCTTTCACTATTTTATGTGTTATAAATGATTCCAGTTAGTTGGGATTAAGTTTTAATCATGTTTGTAAATTTGCTTTAGGTCTAGTGTTTTCTAGTGAAACTAGTTTTTGATATTAGATTGGGACGGGCTTAGATTAGAGTGACATGGACATGGAGGATTCGTATAACTGATTCCGACTTGCTCGGGATTGAGTCATGATTGTTATTGTTGTCGTCTATCTGTACATCTATTTTTCATTCCCCCCTTCCCAATTAGTTGGTGATAAAATAATACTCAGCTGATTTTCGGACGTGTAAATGGAAAGAAGAATAATATTGCCATGATCCTGTTGAAGTTAGAATTCAGGAATTCAGGTGTTTTTCTAATGGTACTGACTTGTTTAGTATGTTTTAGAGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATGGCAAGTGACTTTCGGTTCATTGTTTTATTTCGGTCATCTTCAAGACTAATAAAGCTCTGTCATGCTAAAGGTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGACCCCGAGGAAGTGAGAAGGCAAGCGGCAGCTTCCACTCAAAGATTTGAGAAAGGTATTTTTATTTGTTGATGTGCATAAAGTTGGATCTTGCAAGGACCTACATATGCAATTCACAATTTGTCTTTTCTTTTTCTCTAAGTTTTCAGCACACGGCATCAAATAAATGATATTAGATTCCTGCAAATAATTCTTATCTCAAAGACTCAAACTACTGTGCCAAGTCTGCTGATTTTGTTACTAAACCGTATTCCCTTTCATCTTTTTTTTCTTTAATGATGTGGTCATGGAGGAAAACAACTGTCAATCTTGGAAGGGATTTTCATTGCAGTCAAGGATGACATTGATTGCTATCCTCATCCTTCAAAAGGTATTTGTTTAACTTCATATTTCCTCGGTAAATATCTCTGCCTTTTTTGGCTGAACATTTCTCCCTGTAAAAAAGTGCAGGTGGTTCTAAATGGTTTCATGAGGTTCGCCAGGTGAAGGCAGATGGGGTTCCTGTGTCAAGATTACGAAACAATGGTGCAATTTTAGTAGGAAAGACAAATATGCATGAGTTTGGTATGGGCACAACAGGAAATAATCCAAATTATGGGTAAACTTGTTTCCTTGAACCCACATGTTGGAAAAATGATTTCCAACACAAATAGCAAATATGACTATTTTTTAAAGATATATGCTAAATATTGGCTTTGTGAATGTTGAAGAAGGACTTCACAATTAACAGGAGTATGCTAAAGACGTCCCTCAAAAGAATACTTTTTTGATTTCTCTATCTTCCTTTCTGTTTCAATTTTGATCTTTCTGTGACTGAGTTGTCACGACCGGAATCTAGACCCCAGACGAGACCGGCGTCGTTGACCTCTCAGAGGTCGCAGACAAGCCTGCTTATGTCATTCTTACTTTACATAGATTAATTTTAGCGGAAAATTTGAAATTTTTGATTCTTTAATCATACTTGCTGAACATTCTTAACATTTCGTAATCGTTCATCATCAACCATCTAACATTTAAGAGATAAGCAACTGAAAGAAATAATTCATTAAGTATTAATTGTATATCGGCCAAAATAGCACCAATACAAAGTTTGAACCAAAACAGGAAAGAAACGCTAGTGGAACATGTTCCGCTAGCTCAACTCTAAAACTACGCTAGAATGTAAAACAGTAGCATCCTCGAAAGCATGAGGACCTACCAAACTCCGGATGAATACTGATGTCCGGATAGCTGCAACAACGAACCTGTAGCTCTAGCGTCCACCTGTGCCTGCACCTAAAAATAGATGTTCGTATGGAATTAGTACACACTTGTACTAAGTATGAGTATATGCAAGTACACACCAGGGACATGCATGAGGAAGAATAGCTCTTTCCTAACAACATGATTTTTGGAAGTCAAGTCAGTGGACTTGCCAAATTGAGATTGGGAAAGTTATGCCATGAGAGTGACATGCATCATTATAATTATCGTATAGCACACAAAACATAACATATTCATATAACACATAACATATAACACATACTTTCTTTCATATTATTCATTCGTATACCATGAGACCTTATTATCATAGACTTAACTTTAAGACTTTCCAAAATGAGGGCTCAACATATGAGACCTCAACTAGGGAGCCTTCTTTAGCAAACACAGAGTCTGCTTCACTCATTCATTCGTATTTCATTTCAATTCATTCATAGGCCAGTGCGAACACCAGCTATACCTAGGATGTAGTTTAAGACTTTCATCGGGTTTGCTGTGCAATGATCAGGAATGACCTAATGTCATTACCTGAATCTAGCTCACCTCTTGATTATCCTATCCTAACACCTTCGGTATCATTCATTTCTTTATATGATTCATTTGAGGCTGGCCTCATTCATTCATTGGGAACTTTAACTTTAACCGACATAGATCATGTGAGCATCATGAAATCCAGTGTCTTCCCCACACCGAAAAGAGGTGGAATCACCGGCCAAAGCGATTCAAATAACATGCTAGCGTATATGGGAATTTAACCCCGCCAGATCCCTATAGTGGCAATATAGGTTCAAAGACTAGGAGATGTGTGGAGACCCATACCCGGCAAGCCGGACAGTCTCATCTCATGAGAATTACGTGAACCTCCGCCCTTCCCGAAAGAAGGCATCACCACTCATAGCTAGCCTATCGGTGCTCGGTATAAAGTTCCATTACATGCAACTCATACATCATAGAAGTTTGCTTCTAGTATGAAGACATCATAGCTCAATAGATGATTTCTCATCTCATCATTAGTATTAAGTGTTTTAAACTCAATATTTTTATTAGAGTATTCATAGAGACTGGTCTCTTCATTATCTTACACTCTCATTGGTGAGTATGTATCGGTAACATTTACTTAAGCTTATTTAAGATTGCTCTCATCATACGCATTAACCTCACATCATGATTGTCGCCACATTCTTCATTTCATTACGTATATCTTAGGTTCACTTATTCTTGAACGTATGTTAAACTTATATATCTATACATACAAGCCATGAGGCTTCATTTATAGTTCGTTAAGTGAATTCTTGTTTTTCTAAGATTATGTATTACAAGACTTATGTATCTTGTATATATGCCAAGATCTTTGATTTTTGATCTACGTAGATGACATTATTCTTGAATATTTCACTCACGTATGACTTATGTATCAATACGGAGGTTTGGACACGAGAACCCAAATTTTGAATTATTTGGATATCATTTATATTTTTCATTGATTTTTGTTCTAATATTCATAAATTTAGAACTCTAAGTTAAGTCTCAACATTTTCGTGAAATAATAAATTTTCTATTTTAATTAGAATTCTAAATTAAATTTCAATCATTTACATGAAAGAATAATTTTCTAATTTAATTAGAATTCCAATTTAAATCTCAATATTTACATAAAAGAATTAATATTCTATTTTTAATTAAAATTCTAAATTAAATCTCAATGTTTACATAAGAGAATTAATTTTCCAACTTTAATTAGAATTTTAATTTACTATTATTATTATTTTTAATTAAATTCGCTTGAATAGGGAGGTTGTGGGTTCGAACCCCCACAGCCCCCTTATTTTTCCTCTCATTTTCGCTGAAGAGGAGGCTGTGAGGTGGTGGGTTCGAACCCCCACAGCCCCTCTATTTCTTTTTTAATTCTTTGACATCCAAAAATTTCCAGATTCTTTTTAAACCTATTTCTATGTTTTTGGAAATTTATTCCACTATTTTTTCTGCACTTTTTCATCAAGTTTCACATTAGTTCTTAGGGAGATTTCATGGTTCATTCACTTCACTATGCTTCATCAAAATGAACATCACATTGCACACCCATTTCACACATAAAATACATGATAAATAAACAACTTATATACCCCAAAACAATGCCTAAAACACTGCCCTATACACACCCATACATCAACTTTTTCCGGTCATATTCTGATGATCATTATCGCGATTTCCCGCACATAAACACACTCATATTTAATTTAAACACATCATTCATGCAAAAATCTAGCAGCACAACATACCCATCCTACAAATTCATTAGGGAGCTAAGGACAAGGACATACGAAGGGGAACAACCTTAGTTTCAAGAGTTTAAGAAACGTCCGAAAGAAAGTACTCTTGGAGAAAGAATTCCATGAGAGAAACTCATACCTTAATCGATGTTCAAACTTTAATGTTGCTGCCCGGAAAACTCCTCCAAACCACTCCCAATTCACTTCAAAGTATACCTCTCTTAGCCTTGACGTTTTGATTACTTTTTCTTTTGCTTAAAAAAATTTTTTGTGAGTTCTTCAAGCATGAAAATTATTGATATTTTGGCAGAAATAATGTGAGGAAGATGGAGAACGTGAGAGAGGGAGTTTAGAAGCGTGAGAGAGAGAGGGCTAATTGGATTAGGAGACTAATTCAAGAATTAGTCAAATAACATTAAAATAAATAAATACAAATCTGTTTTATTTATTTATTTATTTATTCATTTAAAACGTGAAAGGACAATTATGCCCTTAAATACCTATTTATTCTTATTTACATAATTCTCTTTTTTTTTGAATCGTTACATGAGTATTGGATGTTCTGTTGTAGTCATTTAAGGTTCACCAGAGTGGTTTATTCCTAGTTCATTCTTCTTGATCAAGAGAGGTTGTCGGGTGGTGTTCTTTTGGCTGTTATGTGATCATTGCCACATTTTGACTCATTTAACTGCAGAATAGTAATACTTTTGTTTCCCTACATCTCTTTTGAATGATGATTCTTTACTTAAGCTACATATTTCAACATGTCTAATAAAAATGTTGTCCAGTCCAGTTATTATATTTTTGTAGTCTTTTTCCTTTGGTTGAGTGACTGAGAGTCTTGCTTGAGTTAATATTTGACAAGTCACTCATACAGACCGCTTTAGATATCTTTCCTTGTTCTCGGAATATAATTTTTTGAAGTGTATCTGGGAACTATTGTTTCTTGGGTATCTTTAGGTTGAGTGTATATTTTACCTTCCACGGCAGTAATGAGCATTTTTCTATGGCAGTACACCTAGAAATCCGCATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCT</genome_strand>
        <mrna_strand>CATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAG..........................................................................ATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATG......................................................................GTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGACCCCGAGGAAGTGAGAAGGCAAGCGGCAGCTTCCACTCAAAGATTTGAGAAAG.............................................................................................................................................................................................................................................GAAAACAACTGTCAATCTTGGAAGGGATTTTCATTGCAGTCAAGGATGACATTGATTGCTATCCTCATCCTTCAAAAG................................................................................GTGGTTCTAAATGGTTTCATGAGGTTCGCCAGGTGAAGGCAGATGGGGTTCCTGTGTCAAGATTACGAAACAATGGTGCAATTTTAGTAGGAAAGACAAATATGCATGAGTTTGGTATGGGCACAACAGGAAATAATCCAAATTATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACCTAGAAATCCGCATAATCCAAAAAGGTACACGGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599728" ref_strand="+" ref_description="SGN-E599728 [52722]">
      <seq>ttctttaatgatgtggtcatggaggaaacccattgtcaatcttggatgggattttcattgcagtcaaggatgacattgattgctatcctcatccttcaaagggtggttctaaatggtttcatgaggttcgccaggtaaaggcagatggggtttctgtgtcaagattacgaaacagtggtgcaattttagtaggaaagacaaatatgcatgagtttggtatgggcacaacaggaaataatccaaattacggtacacctggaaatccgcataatccaaaaaggtacacaggtggttcttcctcaggttcagctgcaattgttgcttctggattgtgctcagcagcattgggaacagatggtggaggttcagtacgaattcctgcttctctttgcggggttgtgggcttgaaaacaacatttggacggactgacctgacagggtcactgtgggaagcaggaactgtcacaattattggacccatcacagctacaggtatgcagcaatcttgggatcctctccagctgatcgaattcggctgaatccttccatcccttgtttaccagatttatcttccagtgagagttcaaatatcttgggatcacttaccttgggaaagtatacaaagtggtttaacgatgttagctcgaccgacatatctgataagtgtgaagatgtcctaaaccaactatttcgtctgtatgggtgcaaaacaacagagattgtcataccggagcttcgtgagctgcgcacagcccatactgttacttttggatctgaatcactgtgcttactgaatcctgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="38114" stop="45891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38414" g_stop="38515" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38516" i_stop="38595" i_length="80">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38596" g_stop="38743" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="250" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38744" i_stop="42688" i_length="3945">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.271" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42689" g_stop="42801" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="363" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42802" i_stop="42886" i_length="85">
            <donor d_prob="0.647" d_score="0.96"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42887" g_stop="42962" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="439" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42963" i_stop="43909" i_length="947">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43910" g_stop="43962" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="492" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43963" i_stop="44438" i_length="476">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44439" g_stop="44490" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="544" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44491" i_stop="45081" i_length="591">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.890" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45082" g_stop="45162" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="625" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45163" i_stop="45246" i_length="84">
            <donor d_prob="0.489" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45247" g_stop="45330" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="709" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45331" i_stop="45496" i_length="166">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.755" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="45497" g_stop="45591" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="804" r_length="95" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E599728" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38414" e_stop="38515"/>
          <exon e_start="38596" e_stop="38743"/>
          <exon e_start="42689" e_stop="42801"/>
          <exon e_start="42887" e_stop="42962"/>
          <exon e_start="43910" e_stop="43962"/>
          <exon e_start="44439" e_stop="44490"/>
          <exon e_start="45082" e_stop="45162"/>
          <exon e_start="45247" e_stop="45330"/>
          <exon e_start="45497" e_stop="45591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTAATGATGTGGTCATGGAGGAAAACAACTGTCAATCTTGGAAGGGATTTTCATTGCAGTCAAGGATGACATTGATTGCTATCCTCATCCTTCAAAAGGTATTTGTTTAACTTCATATTTCCTCGGTAAATATCTCTGCCTTTTTTGGCTGAACATTTCTCCCTGTAAAAAAGTGCAGGTGGTTCTAAATGGTTTCATGAGGTTCGCCAGGTGAAGGCAGATGGGGTTCCTGTGTCAAGATTACGAAACAATGGTGCAATTTTAGTAGGAAAGACAAATATGCATGAGTTTGGTATGGGCACAACAGGAAATAATCCAAATTATGGGTAAACTTGTTTCCTTGAACCCACATGTTGGAAAAATGATTTCCAACACAAATAGCAAATATGACTATTTTTTAAAGATATATGCTAAATATTGGCTTTGTGAATGTTGAAGAAGGACTTCACAATTAACAGGAGTATGCTAAAGACGTCCCTCAAAAGAATACTTTTTTGATTTCTCTATCTTCCTTTCTGTTTCAATTTTGATCTTTCTGTGACTGAGTTGTCACGACCGGAATCTAGACCCCAGACGAGACCGGCGTCGTTGACCTCTCAGAGGTCGCAGACAAGCCTGCTTATGTCATTCTTACTTTACATAGATTAATTTTAGCGGAAAATTTGAAATTTTTGATTCTTTAATCATACTTGCTGAACATTCTTAACATTTCGTAATCGTTCATCATCAACCATCTAACATTTAAGAGATAAGCAACTGAAAGAAATAATTCATTAAGTATTAATTGTATATCGGCCAAAATAGCACCAATACAAAGTTTGAACCAAAACAGGAAAGAAACGCTAGTGGAACATGTTCCGCTAGCTCAACTCTAAAACTACGCTAGAATGTAAAACAGTAGCATCCTCGAAAGCATGAGGACCTACCAAACTCCGGATGAATACTGATGTCCGGATAGCTGCAACAACGAACCTGTAGCTCTAGCGTCCACCTGTGCCTGCACCTAAAAATAGATGTTCGTATGGAATTAGTACACACTTGTACTAAGTATGAGTATATGCAAGTACACACCAGGGACATGCATGAGGAAGAATAGCTCTTTCCTAACAACATGATTTTTGGAAGTCAAGTCAGTGGACTTGCCAAATTGAGATTGGGAAAGTTATGCCATGAGAGTGACATGCATCATTATAATTATCGTATAGCACACAAAACATAACATATTCATATAACACATAACATATAACACATACTTTCTTTCATATTATTCATTCGTATACCATGAGACCTTATTATCATAGACTTAACTTTAAGACTTTCCAAAATGAGGGCTCAACATATGAGACCTCAACTAGGGAGCCTTCTTTAGCAAACACAGAGTCTGCTTCACTCATTCATTCGTATTTCATTTCAATTCATTCATAGGCCAGTGCGAACACCAGCTATACCTAGGATGTAGTTTAAGACTTTCATCGGGTTTGCTGTGCAATGATCAGGAATGACCTAATGTCATTACCTGAATCTAGCTCACCTCTTGATTATCCTATCCTAACACCTTCGGTATCATTCATTTCTTTATATGATTCATTTGAGGCTGGCCTCATTCATTCATTGGGAACTTTAACTTTAACCGACATAGATCATGTGAGCATCATGAAATCCAGTGTCTTCCCCACACCGAAAAGAGGTGGAATCACCGGCCAAAGCGATTCAAATAACATGCTAGCGTATATGGGAATTTAACCCCGCCAGATCCCTATAGTGGCAATATAGGTTCAAAGACTAGGAGATGTGTGGAGACCCATACCCGGCAAGCCGGACAGTCTCATCTCATGAGAATTACGTGAACCTCCGCCCTTCCCGAAAGAAGGCATCACCACTCATAGCTAGCCTATCGGTGCTCGGTATAAAGTTCCATTACATGCAACTCATACATCATAGAAGTTTGCTTCTAGTATGAAGACATCATAGCTCAATAGATGATTTCTCATCTCATCATTAGTATTAAGTGTTTTAAACTCAATATTTTTATTAGAGTATTCATAGAGACTGGTCTCTTCATTATCTTACACTCTCATTGGTGAGTATGTATCGGTAACATTTACTTAAGCTTATTTAAGATTGCTCTCATCATACGCATTAACCTCACATCATGATTGTCGCCACATTCTTCATTTCATTACGTATATCTTAGGTTCACTTATTCTTGAACGTATGTTAAACTTATATATCTATACATACAAGCCATGAGGCTTCATTTATAGTTCGTTAAGTGAATTCTTGTTTTTCTAAGATTATGTATTACAAGACTTATGTATCTTGTATATATGCCAAGATCTTTGATTTTTGATCTACGTAGATGACATTATTCTTGAATATTTCACTCACGTATGACTTATGTATCAATACGGAGGTTTGGACACGAGAACCCAAATTTTGAATTATTTGGATATCATTTATATTTTTCATTGATTTTTGTTCTAATATTCATAAATTTAGAACTCTAAGTTAAGTCTCAACATTTTCGTGAAATAATAAATTTTCTATTTTAATTAGAATTCTAAATTAAATTTCAATCATTTACATGAAAGAATAATTTTCTAATTTAATTAGAATTCCAATTTAAATCTCAATATTTACATAAAAGAATTAATATTCTATTTTTAATTAAAATTCTAAATTAAATCTCAATGTTTACATAAGAGAATTAATTTTCCAACTTTAATTAGAATTTTAATTTACTATTATTATTATTTTTAATTAAATTCGCTTGAATAGGGAGGTTGTGGGTTCGAACCCCCACAGCCCCCTTATTTTTCCTCTCATTTTCGCTGAAGAGGAGGCTGTGAGGTGGTGGGTTCGAACCCCCACAGCCCCTCTATTTCTTTTTTAATTCTTTGACATCCAAAAATTTCCAGATTCTTTTTAAACCTATTTCTATGTTTTTGGAAATTTATTCCACTATTTTTTCTGCACTTTTTCATCAAGTTTCACATTAGTTCTTAGGGAGATTTCATGGTTCATTCACTTCACTATGCTTCATCAAAATGAACATCACATTGCACACCCATTTCACACATAAAATACATGATAAATAAACAACTTATATACCCCAAAACAATGCCTAAAACACTGCCCTATACACACCCATACATCAACTTTTTCCGGTCATATTCTGATGATCATTATCGCGATTTCCCGCACATAAACACACTCATATTTAATTTAAACACATCATTCATGCAAAAATCTAGCAGCACAACATACCCATCCTACAAATTCATTAGGGAGCTAAGGACAAGGACATACGAAGGGGAACAACCTTAGTTTCAAGAGTTTAAGAAACGTCCGAAAGAAAGTACTCTTGGAGAAAGAATTCCATGAGAGAAACTCATACCTTAATCGATGTTCAAACTTTAATGTTGCTGCCCGGAAAACTCCTCCAAACCACTCCCAATTCACTTCAAAGTATACCTCTCTTAGCCTTGACGTTTTGATTACTTTTTCTTTTGCTTAAAAAAATTTTTTGTGAGTTCTTCAAGCATGAAAATTATTGATATTTTGGCAGAAATAATGTGAGGAAGATGGAGAACGTGAGAGAGGGAGTTTAGAAGCGTGAGAGAGAGAGGGCTAATTGGATTAGGAGACTAATTCAAGAATTAGTCAAATAACATTAAAATAAATAAATACAAATCTGTTTTATTTATTTATTTATTTATTCATTTAAAACGTGAAAGGACAATTATGCCCTTAAATACCTATTTATTCTTATTTACATAATTCTCTTTTTTTTTGAATCGTTACATGAGTATTGGATGTTCTGTTGTAGTCATTTAAGGTTCACCAGAGTGGTTTATTCCTAGTTCATTCTTCTTGATCAAGAGAGGTTGTCGGGTGGTGTTCTTTTGGCTGTTATGTGATCATTGCCACATTTTGACTCATTTAACTGCAGAATAGTAATACTTTTGTTTCCCTACATCTCTTTTGAATGATGATTCTTTACTTAAGCTACATATTTCAACATGTCTAATAAAAATGTTGTCCAGTCCAGTTATTATATTTTTGTAGTCTTTTTCCTTTGGTTGAGTGACTGAGAGTCTTGCTTGAGTTAATATTTGACAAGTCACTCATACAGACCGCTTTAGATATCTTTCCTTGTTCTCGGAATATAATTTTTTGAAGTGTATCTGGGAACTATTGTTTCTTGGGTATCTTTAGGTTGAGTGTATATTTTACCTTCCACGGCAGTAATGAGCATTTTTCTATGGCAGTACACCTAGAAATCCGCATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAGGTTGTATGACATATTGGGCGTAGTGAATTACTAATTTGTTTTAAAATGGTTATAGATTTTCAAGATTCATTCATTTGAAGTCCAGGTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGGGTAAGTTCATGAATGGCAGGTCAATGTGCATCTCAACCTTAGGCTTATGAATTATATTGTTCCCTTCAGGAAAACTTTCTGTCTGCTGTCAAAGCTATGATCTTCATACAACTTGCCTCCCTCGTACTCTAGCCTAAAAATTGTTCTTCTCTTTAGTTATCCCTATTTTCTGGATTCTTAAAGTCTCTATGTTAACATGTATTCTTCAATAGCTGTAAAGGGCATTTTTCATTTCGCTTGTGGATAAGTGAAACAATCATTATAAACCTAAAACTGTGTGTAAGGCATGTAATCAAGTATATTTTTTGTAGGCTATAGTTAAACTCAAAAGCATTATTTCTCAGGCACTTCATGGTATTAGAAATAAGGTAGCTTTGTAGAGAAGTGAAGCCTTTTACTGCAGTGGTTTATAACTCTATTCTGCACATTGCTTAGAAATGTAATCAAAGAAGAGCCCTATACGCTTTCTACACACACTGCTTACATTATCCATACCGTGATACGACAGCAAAGGAGACACCGTGTACATGCACTACTTACAATCTTGCAGATCCATCAATAATTCAGGATTAAGGTATCGGTGAAAAAAAGAAAAGTCTTGGTTTTCTGTTCTTTCATTACAGAATCCAAAAACAAGTAAATAACAATGATCTTCATGTCCTGTGAATGCTATTTGAGTGCGCACTGAAGCAAGCTAATTTTTTCTTACAAATTTTGGTCAGATGACTTTTTTTTGTATGCATGAACATGGAGAGTGATTTTTCATCTAGTCATGTCCAAGAAGCTAGATGCTAAAAGAAATAATATTAAGTTCATTTTATGTTGTGATATGTTTCATTTTGGCCATTGTCAATGATACTAGAATGAACTCCCATACACTTAGCAGAGATTGCATGTTGCAACGGTAGATATGTGTATAATTTTGTCCAATTCTGTTCTTTTCTCAGGTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGTGTTAGTAATTGGGTTTACTGCCCATTTCCTTACAAACAAATAGTCAATTCTGGTCATGAAAATCTCTGGTATTCATCTTAGTATCTTACTGTGTACAGTCAACCATGGATTTTTTATTTACCTCTTTGACTTGATTACAAGTGCACGTAAAATTATTTAGGTGTTGCACTGTTTACACACTGCATCAATTTCATCTACCTTTATGTGAGCTAAAACAACAGTAAAGAACTTACAACAAGAACAACATTCACAGTACAGTCCCACAAATGGGTCCGAGGAGGCTGGGGTGTACGCAGACCTTGTAAACATAGATCAATTAGGTTGTATATATATTTTTAAAAATAGGTTGTATGTTGGGGATCTTTTTGTTAAATTTGGTCCAGGTATCTTGATCATGGTGATAACCACTCTTATGGTTGATATGTTGATTATTGCTATTTTTCTTACAACTTTTCAGGTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCTGTAATCACTCACATAGTGTACTTTTGCTAAATTTCAAGATATTGTTCTGTTTGAGTGTTCAGTTTTAACCTTTTTTTTCCCTTCATTCGTGGAAATACTTAAAGTTAATATTAGTAAATAGAGTATCAGATCATTTTTTAACGTTGAGTTTGATCATCTGTGATACTGAAGTATGTTGGTTACCATAATAACTCAAGTTTGGGGTATTTTTCTTCAGAATTCTGATCCTGGTTCAGTTTGGAGGATGTTTATTCTGCTGAATGTCCCATTGTTCCTGTTTTTATAAATTCTGCAGTATTCACTCTACTTGTTATCATAAAAGATTATGAGGACTATTTTAGTTAAATTGCTGAAAGAAATTGTGACATTTCTCTGTCCATTATAACCTTGCTGTTTTAGGTCCCCCCAAACGGATTTGGTATAGCTAAACAAGACCAAGCTTAAGCATAGGATTAAGTTGATCCTATACTTGTACTGGAGACTGTTGAATTCGGTTCAATGCCAAATGAGTTCTTTTCATTGGATTAAAAAGTTGTACTCTTCATTACGCATGCTGTTTTCTACTCACATTGTTACTGATTGATTTTGCAGTCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAGGTGTTGCACTTCTATTCTCTTAAGGTTGTTGATGATTTTAACCCTCTTGGTTGAGCTTTGGCTGATATAAGACATGTTTTACAGTGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAAGTAAGTCCAGTACTCTTTATTACGTATGTGATCAATTCTGTCAGACTCATGCTTTTTACATCAAGATTTGTCTATTTCAGAAGACTTCATGTTTGAAGTTCAGGTTCACTTTTCTGGATTTAATTTTGTTTATTCTATTTTTCTGGCTTAACTCTTTGCAATCAAGACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTG</genome_strand>
        <mrna_strand>TTCTTTAATGATGTGGTCATGGAGGAAACCCATTGTCAATCTTGGATGGGATTTTCATTGCAGTCAAGGATGACATTGATTGCTATCCTCATCCTTCAAAGG................................................................................GTGGTTCTAAATGGTTTCATGAGGTTCGCCAGGTAAAGGCAGATGGGGTTTCTGTGTCAAGATTACGAAACAGTGGTGCAATTTTAGTAGGAAAGACAAATATGCATGAGTTTGGTATGGGCACAACAGGAAATAATCCAAATTACGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACCTGGAAATCCGCATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTTGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGGTGGAG.....................................................................................GTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTGAAAACAACATTTGGACGGACTGACCTGACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATCTTGGGATCCTCTCCAGCTGATCGAATTCGGCTGAATCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCCCTTGTTTACCAGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAG....................................................................................TGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCTGTATGGGTGCAAA......................................................................................................................................................................ACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCCCATACTGTTACTTTTGGATCTGAATCACTGTGCTTACTGAATCCTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272447" ref_strand="+" ref_description="SGN-E272447 [cLEM-19-J7]">
      <seq>gggttcctgtgtcaagattacgaaacaatggtgcaattttagtaggaaagacaaatatgcatgagtttggtatgggcacaacaggaaataatccaaattatggtacacctagaaatccgcataatccaaaaaggtacacaggtggttcttcctcaggttcagctgcaattgtcgcttctggattgtgctcagcagcattgggaacagatgctggaggttcagtacgaattcctgcttctctttgcggggttgtgggcttaaaaacaacatttggacggactgacctgacagggtctttgtgggaagcaggaactgtcacaattattggacccatcacagctactgttgaggatgccatacttgtgtatgcagcaatctcgggatcctctccaactgatcgaattcagctgaatccttccatccctaattttcccgatttatcttccagtgagagttcaaatatcttgggatcacttaccttgggaaagtatacaaagtggtttaacgatgttagctcgaccgacatatctgataagtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="38341" stop="45590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38641" g_stop="38743" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38744" i_stop="42688" i_length="3945">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.271" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42689" g_stop="42801" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="216" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42802" i_stop="42886" i_length="85">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42887" g_stop="42962" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="292" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42963" i_stop="43909" i_length="947">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43910" g_stop="43981" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="364" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43982" i_stop="44438" i_length="457">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44439" g_stop="44490" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="416" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44491" i_stop="45081" i_length="591">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45082" g_stop="45162" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="497" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45163" i_stop="45246" i_length="84">
            <donor d_prob="0.489" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45247" g_stop="45290" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="541" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E272447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38641" e_stop="38743"/>
          <exon e_start="42689" e_stop="42801"/>
          <exon e_start="42887" e_stop="42962"/>
          <exon e_start="43910" e_stop="43981"/>
          <exon e_start="44439" e_stop="44490"/>
          <exon e_start="45082" e_stop="45162"/>
          <exon e_start="45247" e_stop="45290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTCCTGTGTCAAGATTACGAAACAATGGTGCAATTTTAGTAGGAAAGACAAATATGCATGAGTTTGGTATGGGCACAACAGGAAATAATCCAAATTATGGGTAAACTTGTTTCCTTGAACCCACATGTTGGAAAAATGATTTCCAACACAAATAGCAAATATGACTATTTTTTAAAGATATATGCTAAATATTGGCTTTGTGAATGTTGAAGAAGGACTTCACAATTAACAGGAGTATGCTAAAGACGTCCCTCAAAAGAATACTTTTTTGATTTCTCTATCTTCCTTTCTGTTTCAATTTTGATCTTTCTGTGACTGAGTTGTCACGACCGGAATCTAGACCCCAGACGAGACCGGCGTCGTTGACCTCTCAGAGGTCGCAGACAAGCCTGCTTATGTCATTCTTACTTTACATAGATTAATTTTAGCGGAAAATTTGAAATTTTTGATTCTTTAATCATACTTGCTGAACATTCTTAACATTTCGTAATCGTTCATCATCAACCATCTAACATTTAAGAGATAAGCAACTGAAAGAAATAATTCATTAAGTATTAATTGTATATCGGCCAAAATAGCACCAATACAAAGTTTGAACCAAAACAGGAAAGAAACGCTAGTGGAACATGTTCCGCTAGCTCAACTCTAAAACTACGCTAGAATGTAAAACAGTAGCATCCTCGAAAGCATGAGGACCTACCAAACTCCGGATGAATACTGATGTCCGGATAGCTGCAACAACGAACCTGTAGCTCTAGCGTCCACCTGTGCCTGCACCTAAAAATAGATGTTCGTATGGAATTAGTACACACTTGTACTAAGTATGAGTATATGCAAGTACACACCAGGGACATGCATGAGGAAGAATAGCTCTTTCCTAACAACATGATTTTTGGAAGTCAAGTCAGTGGACTTGCCAAATTGAGATTGGGAAAGTTATGCCATGAGAGTGACATGCATCATTATAATTATCGTATAGCACACAAAACATAACATATTCATATAACACATAACATATAACACATACTTTCTTTCATATTATTCATTCGTATACCATGAGACCTTATTATCATAGACTTAACTTTAAGACTTTCCAAAATGAGGGCTCAACATATGAGACCTCAACTAGGGAGCCTTCTTTAGCAAACACAGAGTCTGCTTCACTCATTCATTCGTATTTCATTTCAATTCATTCATAGGCCAGTGCGAACACCAGCTATACCTAGGATGTAGTTTAAGACTTTCATCGGGTTTGCTGTGCAATGATCAGGAATGACCTAATGTCATTACCTGAATCTAGCTCACCTCTTGATTATCCTATCCTAACACCTTCGGTATCATTCATTTCTTTATATGATTCATTTGAGGCTGGCCTCATTCATTCATTGGGAACTTTAACTTTAACCGACATAGATCATGTGAGCATCATGAAATCCAGTGTCTTCCCCACACCGAAAAGAGGTGGAATCACCGGCCAAAGCGATTCAAATAACATGCTAGCGTATATGGGAATTTAACCCCGCCAGATCCCTATAGTGGCAATATAGGTTCAAAGACTAGGAGATGTGTGGAGACCCATACCCGGCAAGCCGGACAGTCTCATCTCATGAGAATTACGTGAACCTCCGCCCTTCCCGAAAGAAGGCATCACCACTCATAGCTAGCCTATCGGTGCTCGGTATAAAGTTCCATTACATGCAACTCATACATCATAGAAGTTTGCTTCTAGTATGAAGACATCATAGCTCAATAGATGATTTCTCATCTCATCATTAGTATTAAGTGTTTTAAACTCAATATTTTTATTAGAGTATTCATAGAGACTGGTCTCTTCATTATCTTACACTCTCATTGGTGAGTATGTATCGGTAACATTTACTTAAGCTTATTTAAGATTGCTCTCATCATACGCATTAACCTCACATCATGATTGTCGCCACATTCTTCATTTCATTACGTATATCTTAGGTTCACTTATTCTTGAACGTATGTTAAACTTATATATCTATACATACAAGCCATGAGGCTTCATTTATAGTTCGTTAAGTGAATTCTTGTTTTTCTAAGATTATGTATTACAAGACTTATGTATCTTGTATATATGCCAAGATCTTTGATTTTTGATCTACGTAGATGACATTATTCTTGAATATTTCACTCACGTATGACTTATGTATCAATACGGAGGTTTGGACACGAGAACCCAAATTTTGAATTATTTGGATATCATTTATATTTTTCATTGATTTTTGTTCTAATATTCATAAATTTAGAACTCTAAGTTAAGTCTCAACATTTTCGTGAAATAATAAATTTTCTATTTTAATTAGAATTCTAAATTAAATTTCAATCATTTACATGAAAGAATAATTTTCTAATTTAATTAGAATTCCAATTTAAATCTCAATATTTACATAAAAGAATTAATATTCTATTTTTAATTAAAATTCTAAATTAAATCTCAATGTTTACATAAGAGAATTAATTTTCCAACTTTAATTAGAATTTTAATTTACTATTATTATTATTTTTAATTAAATTCGCTTGAATAGGGAGGTTGTGGGTTCGAACCCCCACAGCCCCCTTATTTTTCCTCTCATTTTCGCTGAAGAGGAGGCTGTGAGGTGGTGGGTTCGAACCCCCACAGCCCCTCTATTTCTTTTTTAATTCTTTGACATCCAAAAATTTCCAGATTCTTTTTAAACCTATTTCTATGTTTTTGGAAATTTATTCCACTATTTTTTCTGCACTTTTTCATCAAGTTTCACATTAGTTCTTAGGGAGATTTCATGGTTCATTCACTTCACTATGCTTCATCAAAATGAACATCACATTGCACACCCATTTCACACATAAAATACATGATAAATAAACAACTTATATACCCCAAAACAATGCCTAAAACACTGCCCTATACACACCCATACATCAACTTTTTCCGGTCATATTCTGATGATCATTATCGCGATTTCCCGCACATAAACACACTCATATTTAATTTAAACACATCATTCATGCAAAAATCTAGCAGCACAACATACCCATCCTACAAATTCATTAGGGAGCTAAGGACAAGGACATACGAAGGGGAACAACCTTAGTTTCAAGAGTTTAAGAAACGTCCGAAAGAAAGTACTCTTGGAGAAAGAATTCCATGAGAGAAACTCATACCTTAATCGATGTTCAAACTTTAATGTTGCTGCCCGGAAAACTCCTCCAAACCACTCCCAATTCACTTCAAAGTATACCTCTCTTAGCCTTGACGTTTTGATTACTTTTTCTTTTGCTTAAAAAAATTTTTTGTGAGTTCTTCAAGCATGAAAATTATTGATATTTTGGCAGAAATAATGTGAGGAAGATGGAGAACGTGAGAGAGGGAGTTTAGAAGCGTGAGAGAGAGAGGGCTAATTGGATTAGGAGACTAATTCAAGAATTAGTCAAATAACATTAAAATAAATAAATACAAATCTGTTTTATTTATTTATTTATTTATTCATTTAAAACGTGAAAGGACAATTATGCCCTTAAATACCTATTTATTCTTATTTACATAATTCTCTTTTTTTTTGAATCGTTACATGAGTATTGGATGTTCTGTTGTAGTCATTTAAGGTTCACCAGAGTGGTTTATTCCTAGTTCATTCTTCTTGATCAAGAGAGGTTGTCGGGTGGTGTTCTTTTGGCTGTTATGTGATCATTGCCACATTTTGACTCATTTAACTGCAGAATAGTAATACTTTTGTTTCCCTACATCTCTTTTGAATGATGATTCTTTACTTAAGCTACATATTTCAACATGTCTAATAAAAATGTTGTCCAGTCCAGTTATTATATTTTTGTAGTCTTTTTCCTTTGGTTGAGTGACTGAGAGTCTTGCTTGAGTTAATATTTGACAAGTCACTCATACAGACCGCTTTAGATATCTTTCCTTGTTCTCGGAATATAATTTTTTGAAGTGTATCTGGGAACTATTGTTTCTTGGGTATCTTTAGGTTGAGTGTATATTTTACCTTCCACGGCAGTAATGAGCATTTTTCTATGGCAGTACACCTAGAAATCCGCATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAGGTTGTATGACATATTGGGCGTAGTGAATTACTAATTTGTTTTAAAATGGTTATAGATTTTCAAGATTCATTCATTTGAAGTCCAGGTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGGGTAAGTTCATGAATGGCAGGTCAATGTGCATCTCAACCTTAGGCTTATGAATTATATTGTTCCCTTCAGGAAAACTTTCTGTCTGCTGTCAAAGCTATGATCTTCATACAACTTGCCTCCCTCGTACTCTAGCCTAAAAATTGTTCTTCTCTTTAGTTATCCCTATTTTCTGGATTCTTAAAGTCTCTATGTTAACATGTATTCTTCAATAGCTGTAAAGGGCATTTTTCATTTCGCTTGTGGATAAGTGAAACAATCATTATAAACCTAAAACTGTGTGTAAGGCATGTAATCAAGTATATTTTTTGTAGGCTATAGTTAAACTCAAAAGCATTATTTCTCAGGCACTTCATGGTATTAGAAATAAGGTAGCTTTGTAGAGAAGTGAAGCCTTTTACTGCAGTGGTTTATAACTCTATTCTGCACATTGCTTAGAAATGTAATCAAAGAAGAGCCCTATACGCTTTCTACACACACTGCTTACATTATCCATACCGTGATACGACAGCAAAGGAGACACCGTGTACATGCACTACTTACAATCTTGCAGATCCATCAATAATTCAGGATTAAGGTATCGGTGAAAAAAAGAAAAGTCTTGGTTTTCTGTTCTTTCATTACAGAATCCAAAAACAAGTAAATAACAATGATCTTCATGTCCTGTGAATGCTATTTGAGTGCGCACTGAAGCAAGCTAATTTTTTCTTACAAATTTTGGTCAGATGACTTTTTTTTGTATGCATGAACATGGAGAGTGATTTTTCATCTAGTCATGTCCAAGAAGCTAGATGCTAAAAGAAATAATATTAAGTTCATTTTATGTTGTGATATGTTTCATTTTGGCCATTGTCAATGATACTAGAATGAACTCCCATACACTTAGCAGAGATTGCATGTTGCAACGGTAGATATGTGTATAATTTTGTCCAATTCTGTTCTTTTCTCAGGTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGTGTTAGTAATTGGGTTTACTGCCCATTTCCTTACAAACAAATAGTCAATTCTGGTCATGAAAATCTCTGGTATTCATCTTAGTATCTTACTGTGTACAGTCAACCATGGATTTTTTATTTACCTCTTTGACTTGATTACAAGTGCACGTAAAATTATTTAGGTGTTGCACTGTTTACACACTGCATCAATTTCATCTACCTTTATGTGAGCTAAAACAACAGTAAAGAACTTACAACAAGAACAACATTCACAGTACAGTCCCACAAATGGGTCCGAGGAGGCTGGGGTGTACGCAGACCTTGTAAACATAGATCAATTAGGTTGTATATATATTTTTAAAAATAGGTTGTATGTTGGGGATCTTTTTGTTAAATTTGGTCCAGGTATCTTGATCATGGTGATAACCACTCTTATGGTTGATATGTTGATTATTGCTATTTTTCTTACAACTTTTCAGGTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCTGTAATCACTCACATAGTGTACTTTTGCTAAATTTCAAGATATTGTTCTGTTTGAGTGTTCAGTTTTAACCTTTTTTTTCCCTTCATTCGTGGAAATACTTAAAGTTAATATTAGTAAATAGAGTATCAGATCATTTTTTAACGTTGAGTTTGATCATCTGTGATACTGAAGTATGTTGGTTACCATAATAACTCAAGTTTGGGGTATTTTTCTTCAGAATTCTGATCCTGGTTCAGTTTGGAGGATGTTTATTCTGCTGAATGTCCCATTGTTCCTGTTTTTATAAATTCTGCAGTATTCACTCTACTTGTTATCATAAAAGATTATGAGGACTATTTTAGTTAAATTGCTGAAAGAAATTGTGACATTTCTCTGTCCATTATAACCTTGCTGTTTTAGGTCCCCCCAAACGGATTTGGTATAGCTAAACAAGACCAAGCTTAAGCATAGGATTAAGTTGATCCTATACTTGTACTGGAGACTGTTGAATTCGGTTCAATGCCAAATGAGTTCTTTTCATTGGATTAAAAAGTTGTACTCTTCATTACGCATGCTGTTTTCTACTCACATTGTTACTGATTGATTTTGCAGTCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAGGTGTTGCACTTCTATTCTCTTAAGGTTGTTGATGATTTTAACCCTCTTGGTTGAGCTTTGGCTGATATAAGACATGTTTTACAGTGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGA</genome_strand>
        <mrna_strand>GGGTTCCTGTGTCAAGATTACGAAACAATGGTGCAATTTTAGTAGGAAAGACAAATATGCATGAGTTTGGTATGGGCACAACAGGAAATAATCCAAATTATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACCTAGAAATCCGCATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAG.....................................................................................GTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAG....................................................................................TGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332471" ref_strand="+" ref_description="SGN-E332471 [cTOD-17-B2]">
      <seq>gaagatggagaacgtgagagagggagtttagaagcgtgagagagagagggctaattggattaggagactaattcaagaattagtcaaataacattaaaataaataaatacaaatctgttttatttatttatttatttattcatttaaaacgtgaaaggacaattatgcccttaaatacctatttattcttatttacataattctctttttttttgaatcgttacatgagtattggatgttctgttgtagtcatttaaggttcaccagagtggtttattcctagttcattcttcttgatcaagagaggttgtcgggtggtgttcttttggctgttatgtgatcattgccacattttgactcatttaactgcagaatagtaatacttttgtttccctacatctcttttgaatgatgattctttacttaagctacatatttcaacatgtctaataaaaatgttgtccagtccagttattatatttttgtagtctttttcctttggttgagtgactgagagtcttgcttgagttaatatttgacaagtcactcatacagaccgctttagatatctttccttgttctcggaatataatttttttgagtgtatctgggaactattgtttcttgggtatctttaggttgagtgtatattttaccttccacggcagtaatgagcatttttctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="41698" stop="42984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41998" g_stop="42684" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E332471" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41998" e_stop="42684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGGAGAACGTGAGAGAGGGAGTTTAGAAGCGTGAGAGAGAGAGGGCTAATTGGATTAGGAGACTAATTCAAGAATTAGTCAAATAACATTAAAATAAATAAATACAAATCTGTTTTATTTATTTATTTATTTATTCATTTAAAACGTGAAAGGACAATTATGCCCTTAAATACCTATTTATTCTTATTTACATAATTCTCTTTTTTTTTGAATCGTTACATGAGTATTGGATGTTCTGTTGTAGTCATTTAAGGTTCACCAGAGTGGTTTATTCCTAGTTCATTCTTCTTGATCAAGAGAGGTTGTCGGGTGGTGTTCTTTTGGCTGTTATGTGATCATTGCCACATTTTGACTCATTTAACTGCAGAATAGTAATACTTTTGTTTCCCTACATCTCTTTTGAATGATGATTCTTTACTTAAGCTACATATTTCAACATGTCTAATAAAAATGTTGTCCAGTCCAGTTATTATATTTTTGTAGTCTTTTTCCTTTGGTTGAGTGACTGAGAGTCTTGCTTGAGTTAATATTTGACAAGTCACTCATACAGACCGCTTTAGATATCTTTCCTTGTTCTCGGAATATAATTTTTTGAAGTGTATCTGGGAACTATTGTTTCTTGGGTATCTTTAGGTTGAGTGTATATTTTACCTTCCACGGCAGTAATGAGCATTTTTCTATG</genome_strand>
        <mrna_strand>GAAGATGGAGAACGTGAGAGAGGGAGTTTAGAAGCGTGAGAGAGAGAGGGCTAATTGGATTAGGAGACTAATTCAAGAATTAGTCAAATAACATTAAAATAAATAAATACAAATCTGTTTTATTTATTTATTTATTTATTCATTTAAAACGTGAAAGGACAATTATGCCCTTAAATACCTATTTATTCTTATTTACATAATTCTCTTTTTTTTTGAATCGTTACATGAGTATTGGATGTTCTGTTGTAGTCATTTAAGGTTCACCAGAGTGGTTTATTCCTAGTTCATTCTTCTTGATCAAGAGAGGTTGTCGGGTGGTGTTCTTTTGGCTGTTATGTGATCATTGCCACATTTTGACTCATTTAACTGCAGAATAGTAATACTTTTGTTTCCCTACATCTCTTTTGAATGATGATTCTTTACTTAAGCTACATATTTCAACATGTCTAATAAAAATGTTGTCCAGTCCAGTTATTATATTTTTGTAGTCTTTTTCCTTTGGTTGAGTGACTGAGAGTCTTGCTTGAGTTAATATTTGACAAGTCACTCATACAGACCGCTTTAGATATCTTTCCTTGTTCTCGGAATATAATTTTTTTGAGTGTATCTGGGAACTATTGTTTCTTGGGTATCTTTAGGTTGAGTGTATATTTTACCTTCCACGGCAGTAATGAGCATTTTTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412577" ref_strand="-" ref_description="SGN-E412577 [STM-16-B21]">
      <seq>gaaatccgcataatccaaaaaggtacacatgtggttcttcctccgattcagctgtaattgtcgattctggattgtgctcagcagcattgggaacaaatggtggaggttcagtaggaattcatgcttctctttgcggggttgtgggcttgaaaacaacatttggacggacagatatgatagggttagttcatgaatggcaggtcactgtgggaagcaggaactgtcccaattatcggacccatcacagctacagttgaggatgccatacttgtgtatgcagcaatctcgggacatctccagctgatcgaattcggctgaatcctctaatcactccctaactgtactttcgcaaaatttcaagatattgttctgtttgagggttcagtttaaccttttttcccttcattagtgtaaatactttagttaatattagtaaatagagtatcagatcagttttcttacaattgctttacaggctttcatttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="42397" stop="44940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42697" g_stop="42801" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42802" i_stop="42886" i_length="85">
            <donor d_prob="0.647" d_score="0.94"/>
            <acceptor a_prob="0.768" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42887" g_stop="42981" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="200" r_length="95" r_score="0.916"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42982" i_stop="43909" i_length="928">
            <donor d_prob="0.694" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43910" g_stop="43981" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="272" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43982" i_stop="44438" i_length="457">
            <donor d_prob="0.924" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44439" g_stop="44622" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="451" r_length="179" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="500"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E412577" ref_strand="-">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412577" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42697" e_stop="42801"/>
          <exon e_start="42887" e_stop="42981"/>
          <exon e_start="43910" e_stop="43981"/>
          <exon e_start="44439" e_stop="44622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCCGCATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAGGTTGTATGACATATTGGGCGTAGTGAATTACTAATTTGTTTTAAAATGGTTATAGATTTTCAAGATTCATTCATTTGAAGTCCAGGTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGGGTAAGTTCATGAATGGCAGGTCAATGTGCATCTCAACCTTAGGCTTATGAATTATATTGTTCCCTTCAGGAAAACTTTCTGTCTGCTGTCAAAGCTATGATCTTCATACAACTTGCCTCCCTCGTACTCTAGCCTAAAAATTGTTCTTCTCTTTAGTTATCCCTATTTTCTGGATTCTTAAAGTCTCTATGTTAACATGTATTCTTCAATAGCTGTAAAGGGCATTTTTCATTTCGCTTGTGGATAAGTGAAACAATCATTATAAACCTAAAACTGTGTGTAAGGCATGTAATCAAGTATATTTTTTGTAGGCTATAGTTAAACTCAAAAGCATTATTTCTCAGGCACTTCATGGTATTAGAAATAAGGTAGCTTTGTAGAGAAGTGAAGCCTTTTACTGCAGTGGTTTATAACTCTATTCTGCACATTGCTTAGAAATGTAATCAAAGAAGAGCCCTATACGCTTTCTACACACACTGCTTACATTATCCATACCGTGATACGACAGCAAAGGAGACACCGTGTACATGCACTACTTACAATCTTGCAGATCCATCAATAATTCAGGATTAAGGTATCGGTGAAAAAAAGAAAAGTCTTGGTTTTCTGTTCTTTCATTACAGAATCCAAAAACAAGTAAATAACAATGATCTTCATGTCCTGTGAATGCTATTTGAGTGCGCACTGAAGCAAGCTAATTTTTTCTTACAAATTTTGGTCAGATGACTTTTTTTTGTATGCATGAACATGGAGAGTGATTTTTCATCTAGTCATGTCCAAGAAGCTAGATGCTAAAAGAAATAATATTAAGTTCATTTTATGTTGTGATATGTTTCATTTTGGCCATTGTCAATGATACTAGAATGAACTCCCATACACTTAGCAGAGATTGCATGTTGCAACGGTAGATATGTGTATAATTTTGTCCAATTCTGTTCTTTTCTCAGGTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGTGTTAGTAATTGGGTTTACTGCCCATTTCCTTACAAACAAATAGTCAATTCTGGTCATGAAAATCTCTGGTATTCATCTTAGTATCTTACTGTGTACAGTCAACCATGGATTTTTTATTTACCTCTTTGACTTGATTACAAGTGCACGTAAAATTATTTAGGTGTTGCACTGTTTACACACTGCATCAATTTCATCTACCTTTATGTGAGCTAAAACAACAGTAAAGAACTTACAACAAGAACAACATTCACAGTACAGTCCCACAAATGGGTCCGAGGAGGCTGGGGTGTACGCAGACCTTGTAAACATAGATCAATTAGGTTGTATATATATTTTTAAAAATAGGTTGTATGTTGGGGATCTTTTTGTTAAATTTGGTCCAGGTATCTTGATCATGGTGATAACCACTCTTATGGTTGATATGTTGATTATTGCTATTTTTCTTACAACTTTTCAGGTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCTGTAATCACTCACATAGTGTACTTTTGCTAAATTTCAAGATATTGTTCTGTTTGAGTGTTCAGTTTTAACCTTTTTTTTCCCTTCATTCGTGGAAATACTTAAAGTTAATATTAGTAAATAGAGTATCAGATC</genome_strand>
        <mrna_strand>GAAATCCGCATAATCCAAAAAGGTACACATGTGGTTCTTCCTCCGATTCAGCTGTAATTGTCGATTCTGGATTGTGCTCAGCAGCATTGGGAACAAATGGTGGAG.....................................................................................GTTCAGTAGGAATTCATGCTTCTCTTTGCGGGGTTGTGGGCTTGAAAACAACATTTGGACGGACAGATATGATAGGGTTAGTTCATGAATGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGTGGGAAGCAGGAACTGTCCCAATTATCGGACCCATCACAGCTACAGTTGAGGATGCCATACTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATCTCGGGA-CATCTCCAGCTGATCGAATTCGGCTGAATCCTCTAATCACTCCCTAACTGTACTTTCGCAAAATTTCAAGATATTGTTCTGTTTGAGGGTTCAG-TTTAACC--TTTTTTCCCTTCATTAGTGTAAATACTT-TAGTTAATATTAGTAAATAGAGTATCAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270378" ref_strand="+" ref_description="SGN-E270378 [cLEM-1-H7]">
      <seq>aaatccgcataatccaaaaaggtacacaggtggttcttcctcaggttcagctgcaattgtcgcttctggattgtgctcagcagcattgggaacagatgctggaggttcagtacgaattcctgcttctctttgcggggttgtgggcttaaaaacaacatttggacggactgacctgacagggtctttgtgggaagcaggaactgtcacaattattggacccatcacagctactgttgaggatgccatacttgtgttagtaattgggtttactgcccatttccttacaaacaaatagtcaattctggtcatgaaaatctctggtatgcagcaatctcgggatcctctccaactgatcgaattcagctgaatccttccatccctaattttcccgatttatcttccagtgagagttcaaatatcttgggatcacttaccttgggaaagtatacaaagtggtttaacgatgttagctcgaccgacatatctgataagtgtgaagatgtcctaaaccaactatttcgtcggtatgggtgcaaaacaacagagattgtcataccggagcttcgtgagctgcgcacagctcatactgttacttttggatctgaatcactgtcctttttgaatcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="42398" stop="45888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42698" g_stop="42801" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42802" i_stop="42886" i_length="85">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42887" g_stop="42962" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="180" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42963" i_stop="43909" i_length="947">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43910" g_stop="44049" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="320" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44050" i_stop="44438" i_length="389">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44439" g_stop="44490" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="372" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44491" i_stop="45081" i_length="591">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45082" g_stop="45162" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="453" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45163" i_stop="45246" i_length="84">
            <donor d_prob="0.489" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45247" g_stop="45330" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="537" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45331" i_stop="45496" i_length="166">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45497" g_stop="45588" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="629" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E270378" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42698" e_stop="42801"/>
          <exon e_start="42887" e_stop="42962"/>
          <exon e_start="43910" e_stop="44049"/>
          <exon e_start="44439" e_stop="44490"/>
          <exon e_start="45082" e_stop="45162"/>
          <exon e_start="45247" e_stop="45330"/>
          <exon e_start="45497" e_stop="45588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCGCATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAGGTTGTATGACATATTGGGCGTAGTGAATTACTAATTTGTTTTAAAATGGTTATAGATTTTCAAGATTCATTCATTTGAAGTCCAGGTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGGGTAAGTTCATGAATGGCAGGTCAATGTGCATCTCAACCTTAGGCTTATGAATTATATTGTTCCCTTCAGGAAAACTTTCTGTCTGCTGTCAAAGCTATGATCTTCATACAACTTGCCTCCCTCGTACTCTAGCCTAAAAATTGTTCTTCTCTTTAGTTATCCCTATTTTCTGGATTCTTAAAGTCTCTATGTTAACATGTATTCTTCAATAGCTGTAAAGGGCATTTTTCATTTCGCTTGTGGATAAGTGAAACAATCATTATAAACCTAAAACTGTGTGTAAGGCATGTAATCAAGTATATTTTTTGTAGGCTATAGTTAAACTCAAAAGCATTATTTCTCAGGCACTTCATGGTATTAGAAATAAGGTAGCTTTGTAGAGAAGTGAAGCCTTTTACTGCAGTGGTTTATAACTCTATTCTGCACATTGCTTAGAAATGTAATCAAAGAAGAGCCCTATACGCTTTCTACACACACTGCTTACATTATCCATACCGTGATACGACAGCAAAGGAGACACCGTGTACATGCACTACTTACAATCTTGCAGATCCATCAATAATTCAGGATTAAGGTATCGGTGAAAAAAAGAAAAGTCTTGGTTTTCTGTTCTTTCATTACAGAATCCAAAAACAAGTAAATAACAATGATCTTCATGTCCTGTGAATGCTATTTGAGTGCGCACTGAAGCAAGCTAATTTTTTCTTACAAATTTTGGTCAGATGACTTTTTTTTGTATGCATGAACATGGAGAGTGATTTTTCATCTAGTCATGTCCAAGAAGCTAGATGCTAAAAGAAATAATATTAAGTTCATTTTATGTTGTGATATGTTTCATTTTGGCCATTGTCAATGATACTAGAATGAACTCCCATACACTTAGCAGAGATTGCATGTTGCAACGGTAGATATGTGTATAATTTTGTCCAATTCTGTTCTTTTCTCAGGTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGTGTTAGTAATTGGGTTTACTGCCCATTTCCTTACAAACAAATAGTCAATTCTGGTCATGAAAATCTCTGGTATTCATCTTAGTATCTTACTGTGTACAGTCAACCATGGATTTTTTATTTACCTCTTTGACTTGATTACAAGTGCACGTAAAATTATTTAGGTGTTGCACTGTTTACACACTGCATCAATTTCATCTACCTTTATGTGAGCTAAAACAACAGTAAAGAACTTACAACAAGAACAACATTCACAGTACAGTCCCACAAATGGGTCCGAGGAGGCTGGGGTGTACGCAGACCTTGTAAACATAGATCAATTAGGTTGTATATATATTTTTAAAAATAGGTTGTATGTTGGGGATCTTTTTGTTAAATTTGGTCCAGGTATCTTGATCATGGTGATAACCACTCTTATGGTTGATATGTTGATTATTGCTATTTTTCTTACAACTTTTCAGGTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCTGTAATCACTCACATAGTGTACTTTTGCTAAATTTCAAGATATTGTTCTGTTTGAGTGTTCAGTTTTAACCTTTTTTTTCCCTTCATTCGTGGAAATACTTAAAGTTAATATTAGTAAATAGAGTATCAGATCATTTTTTAACGTTGAGTTTGATCATCTGTGATACTGAAGTATGTTGGTTACCATAATAACTCAAGTTTGGGGTATTTTTCTTCAGAATTCTGATCCTGGTTCAGTTTGGAGGATGTTTATTCTGCTGAATGTCCCATTGTTCCTGTTTTTATAAATTCTGCAGTATTCACTCTACTTGTTATCATAAAAGATTATGAGGACTATTTTAGTTAAATTGCTGAAAGAAATTGTGACATTTCTCTGTCCATTATAACCTTGCTGTTTTAGGTCCCCCCAAACGGATTTGGTATAGCTAAACAAGACCAAGCTTAAGCATAGGATTAAGTTGATCCTATACTTGTACTGGAGACTGTTGAATTCGGTTCAATGCCAAATGAGTTCTTTTCATTGGATTAAAAAGTTGTACTCTTCATTACGCATGCTGTTTTCTACTCACATTGTTACTGATTGATTTTGCAGTCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAGGTGTTGCACTTCTATTCTCTTAAGGTTGTTGATGATTTTAACCCTCTTGGTTGAGCTTTGGCTGATATAAGACATGTTTTACAGTGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAAGTAAGTCCAGTACTCTTTATTACGTATGTGATCAATTCTGTCAGACTCATGCTTTTTACATCAAGATTTGTCTATTTCAGAAGACTTCATGTTTGAAGTTCAGGTTCACTTTTCTGGATTTAATTTTGTTTATTCTATTTTTCTGGCTTAACTCTTTGCAATCAAGACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGA</genome_strand>
        <mrna_strand>AAATCCGCATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAG.....................................................................................GTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGTGTTAGTAATTGGGTTTACTGCCCATTTCCTTACAAACAAATAGTCAATTCTGGTCATGAAAATCTCTG.....................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAG....................................................................................TGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAA......................................................................................................................................................................ACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252439" ref_strand="+" ref_description="SGN-E252439 [cLEG-12-J8]">
      <seq>cataatccaaaaaggtacacaggtggttcttcctcaggttcagctgcaattgtcgcttctggattgtgctcagcagcattgggaacagatgctggaggttcagtacgaattcctgcttctctttgcggggttgtgggcttaaaaacaacatttggacggactgacctgacagggtctttgtgggaagcaggaactgtcacaattattggacccatcacagctactgttgaggatgccatacttgtgtatgcagcaatctcgggatcctctccaactgatcgaattcagctgaatccttccatccctaattttcccgatttatcttccagtgagagttcaaatatcttgggatcacttaccttgggaaagtatacaaagtggtttaacgatgttagctcgaccgacatatctgataagtgtgaagatgtcctaaaccaactatttcgtcggtatgggtgcaaaacaacagagattgtcataccggagcttcgtgagctgcgcacagctcatactgttacttttggatctgaatcactgtcctttttgaatcctgattgcgaggctgggaaaggagttagattgactaatgacactcgcacaaatctggcacttttcagatcatttgcagcatctgactatatatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="42405" stop="46064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42705" g_stop="42801" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42802" i_stop="42886" i_length="85">
            <donor d_prob="0.647" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42887" g_stop="42962" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="173" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42963" i_stop="43909" i_length="947">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43910" g_stop="43981" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="245" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43982" i_stop="44438" i_length="457">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44439" g_stop="44490" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="297" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44491" i_stop="45081" i_length="591">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45082" g_stop="45162" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="378" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45163" i_stop="45246" i_length="84">
            <donor d_prob="0.489" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45247" g_stop="45330" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="462" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45331" i_stop="45496" i_length="166">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45497" g_stop="45600" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="566" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45601" i_stop="45684" i_length="84">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45685" g_stop="45764" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="646" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E252439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42705" e_stop="42801"/>
          <exon e_start="42887" e_stop="42962"/>
          <exon e_start="43910" e_stop="43981"/>
          <exon e_start="44439" e_stop="44490"/>
          <exon e_start="45082" e_stop="45162"/>
          <exon e_start="45247" e_stop="45330"/>
          <exon e_start="45497" e_stop="45600"/>
          <exon e_start="45685" e_stop="45764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAGGTTGTATGACATATTGGGCGTAGTGAATTACTAATTTGTTTTAAAATGGTTATAGATTTTCAAGATTCATTCATTTGAAGTCCAGGTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGGGTAAGTTCATGAATGGCAGGTCAATGTGCATCTCAACCTTAGGCTTATGAATTATATTGTTCCCTTCAGGAAAACTTTCTGTCTGCTGTCAAAGCTATGATCTTCATACAACTTGCCTCCCTCGTACTCTAGCCTAAAAATTGTTCTTCTCTTTAGTTATCCCTATTTTCTGGATTCTTAAAGTCTCTATGTTAACATGTATTCTTCAATAGCTGTAAAGGGCATTTTTCATTTCGCTTGTGGATAAGTGAAACAATCATTATAAACCTAAAACTGTGTGTAAGGCATGTAATCAAGTATATTTTTTGTAGGCTATAGTTAAACTCAAAAGCATTATTTCTCAGGCACTTCATGGTATTAGAAATAAGGTAGCTTTGTAGAGAAGTGAAGCCTTTTACTGCAGTGGTTTATAACTCTATTCTGCACATTGCTTAGAAATGTAATCAAAGAAGAGCCCTATACGCTTTCTACACACACTGCTTACATTATCCATACCGTGATACGACAGCAAAGGAGACACCGTGTACATGCACTACTTACAATCTTGCAGATCCATCAATAATTCAGGATTAAGGTATCGGTGAAAAAAAGAAAAGTCTTGGTTTTCTGTTCTTTCATTACAGAATCCAAAAACAAGTAAATAACAATGATCTTCATGTCCTGTGAATGCTATTTGAGTGCGCACTGAAGCAAGCTAATTTTTTCTTACAAATTTTGGTCAGATGACTTTTTTTTGTATGCATGAACATGGAGAGTGATTTTTCATCTAGTCATGTCCAAGAAGCTAGATGCTAAAAGAAATAATATTAAGTTCATTTTATGTTGTGATATGTTTCATTTTGGCCATTGTCAATGATACTAGAATGAACTCCCATACACTTAGCAGAGATTGCATGTTGCAACGGTAGATATGTGTATAATTTTGTCCAATTCTGTTCTTTTCTCAGGTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGTGTTAGTAATTGGGTTTACTGCCCATTTCCTTACAAACAAATAGTCAATTCTGGTCATGAAAATCTCTGGTATTCATCTTAGTATCTTACTGTGTACAGTCAACCATGGATTTTTTATTTACCTCTTTGACTTGATTACAAGTGCACGTAAAATTATTTAGGTGTTGCACTGTTTACACACTGCATCAATTTCATCTACCTTTATGTGAGCTAAAACAACAGTAAAGAACTTACAACAAGAACAACATTCACAGTACAGTCCCACAAATGGGTCCGAGGAGGCTGGGGTGTACGCAGACCTTGTAAACATAGATCAATTAGGTTGTATATATATTTTTAAAAATAGGTTGTATGTTGGGGATCTTTTTGTTAAATTTGGTCCAGGTATCTTGATCATGGTGATAACCACTCTTATGGTTGATATGTTGATTATTGCTATTTTTCTTACAACTTTTCAGGTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCTGTAATCACTCACATAGTGTACTTTTGCTAAATTTCAAGATATTGTTCTGTTTGAGTGTTCAGTTTTAACCTTTTTTTTCCCTTCATTCGTGGAAATACTTAAAGTTAATATTAGTAAATAGAGTATCAGATCATTTTTTAACGTTGAGTTTGATCATCTGTGATACTGAAGTATGTTGGTTACCATAATAACTCAAGTTTGGGGTATTTTTCTTCAGAATTCTGATCCTGGTTCAGTTTGGAGGATGTTTATTCTGCTGAATGTCCCATTGTTCCTGTTTTTATAAATTCTGCAGTATTCACTCTACTTGTTATCATAAAAGATTATGAGGACTATTTTAGTTAAATTGCTGAAAGAAATTGTGACATTTCTCTGTCCATTATAACCTTGCTGTTTTAGGTCCCCCCAAACGGATTTGGTATAGCTAAACAAGACCAAGCTTAAGCATAGGATTAAGTTGATCCTATACTTGTACTGGAGACTGTTGAATTCGGTTCAATGCCAAATGAGTTCTTTTCATTGGATTAAAAAGTTGTACTCTTCATTACGCATGCTGTTTTCTACTCACATTGTTACTGATTGATTTTGCAGTCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAGGTGTTGCACTTCTATTCTCTTAAGGTTGTTGATGATTTTAACCCTCTTGGTTGAGCTTTGGCTGATATAAGACATGTTTTACAGTGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAAGTAAGTCCAGTACTCTTTATTACGTATGTGATCAATTCTGTCAGACTCATGCTTTTTACATCAAGATTTGTCTATTTCAGAAGACTTCATGTTTGAAGTTCAGGTTCACTTTTCTGGATTTAATTTTGTTTATTCTATTTTTCTGGCTTAACTCTTTGCAATCAAGACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGGGTATTATTTTCCATCATGCTATTAGTACGACTGCTTGGTATGTTGTTTTCTGGACTAATATAGAATTTCTTTCATTTTATGTAGGAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGACTATATATCTG</genome_strand>
        <mrna_strand>CATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAG.....................................................................................GTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAG....................................................................................TGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAA......................................................................................................................................................................ACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGG....................................................................................GAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGACTATATATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589361" ref_strand="+" ref_description="SGN-E589361 [42933]">
      <seq>ctcaggttcagctgcaattgttgcttctggattgtgctcagcagcattgggaacagatggtggaggttcagtacgaattcctgcttctctttgcggggttgtgggcttgaaaacaacatttggacggactgacctgacagggtcactgtgggaagcaggaactgtcacaattattggacccatcacagctacagttgaggatgccatacttgtgtatgcagcaatcttgggatcctctccagctgatcgaattcggctgaatccttccatcccttgtttaccagatttatcttccagtgagagttcaaatatcttgggatcacttaccttgggaaagtatacaaagtggtttaacgatgttagctcgaccgacatatctgataagtgtgaagatgtcctaaaccaactatttcgtctgtatgggtgcaaaacaacagagattgtcataccggagcttcgtgagctgcgcacagcccatactgttacttttggatctgaatcactgtgcttactgaatcctgattgcgaggctgggaaaggagttagattgactaatgatactcgcacaaatctggcacttttcagatcatttgcagcatctgactatatatctgcccagtgccttaggcgaaggataatgtactaccacatggagattttcaagaaagtagatgtcattgtaacacctaccactggaatgacagccccagaaattccaggaaagtgctctttgcagttggagagacaaatttgcaagttgtagcaagcctaatgcaatttgctatgacagcaaaatgttcttggactttcggcaatttctgtccctattggtcatgataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="42437" stop="48121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42737" g_stop="42801" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42802" i_stop="42886" i_length="85">
            <donor d_prob="0.647" d_score="0.96"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42887" g_stop="42962" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="141" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42963" i_stop="43909" i_length="947">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43910" g_stop="43981" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="213" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43982" i_stop="44438" i_length="457">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44439" g_stop="44490" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="265" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44491" i_stop="45081" i_length="591">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.890" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45082" g_stop="45162" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="346" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45163" i_stop="45246" i_length="84">
            <donor d_prob="0.489" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45247" g_stop="45330" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="430" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45331" i_stop="45496" i_length="166">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.755" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45497" g_stop="45600" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="534" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45601" i_stop="45684" i_length="84">
            <donor d_prob="0.932" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45685" g_stop="45777" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="627" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45778" i_stop="46659" i_length="882">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="46660" g_stop="46728" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="696" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="46729" i_stop="47325" i_length="597">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="47326" g_stop="47390" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="763" r_length="67" r_score="0.938"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="47391" i_stop="47748" i_length="358">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.927" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="47749" g_stop="47810" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="826" r_length="63" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E589361" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42737" e_stop="42801"/>
          <exon e_start="42887" e_stop="42962"/>
          <exon e_start="43910" e_stop="43981"/>
          <exon e_start="44439" e_stop="44490"/>
          <exon e_start="45082" e_stop="45162"/>
          <exon e_start="45247" e_stop="45330"/>
          <exon e_start="45497" e_stop="45600"/>
          <exon e_start="45685" e_stop="45777"/>
          <exon e_start="46660" e_stop="46728"/>
          <exon e_start="47326" e_stop="47390"/>
          <exon e_start="47749" e_stop="47810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAGGTTGTATGACATATTGGGCGTAGTGAATTACTAATTTGTTTTAAAATGGTTATAGATTTTCAAGATTCATTCATTTGAAGTCCAGGTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGGGTAAGTTCATGAATGGCAGGTCAATGTGCATCTCAACCTTAGGCTTATGAATTATATTGTTCCCTTCAGGAAAACTTTCTGTCTGCTGTCAAAGCTATGATCTTCATACAACTTGCCTCCCTCGTACTCTAGCCTAAAAATTGTTCTTCTCTTTAGTTATCCCTATTTTCTGGATTCTTAAAGTCTCTATGTTAACATGTATTCTTCAATAGCTGTAAAGGGCATTTTTCATTTCGCTTGTGGATAAGTGAAACAATCATTATAAACCTAAAACTGTGTGTAAGGCATGTAATCAAGTATATTTTTTGTAGGCTATAGTTAAACTCAAAAGCATTATTTCTCAGGCACTTCATGGTATTAGAAATAAGGTAGCTTTGTAGAGAAGTGAAGCCTTTTACTGCAGTGGTTTATAACTCTATTCTGCACATTGCTTAGAAATGTAATCAAAGAAGAGCCCTATACGCTTTCTACACACACTGCTTACATTATCCATACCGTGATACGACAGCAAAGGAGACACCGTGTACATGCACTACTTACAATCTTGCAGATCCATCAATAATTCAGGATTAAGGTATCGGTGAAAAAAAGAAAAGTCTTGGTTTTCTGTTCTTTCATTACAGAATCCAAAAACAAGTAAATAACAATGATCTTCATGTCCTGTGAATGCTATTTGAGTGCGCACTGAAGCAAGCTAATTTTTTCTTACAAATTTTGGTCAGATGACTTTTTTTTGTATGCATGAACATGGAGAGTGATTTTTCATCTAGTCATGTCCAAGAAGCTAGATGCTAAAAGAAATAATATTAAGTTCATTTTATGTTGTGATATGTTTCATTTTGGCCATTGTCAATGATACTAGAATGAACTCCCATACACTTAGCAGAGATTGCATGTTGCAACGGTAGATATGTGTATAATTTTGTCCAATTCTGTTCTTTTCTCAGGTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGTGTTAGTAATTGGGTTTACTGCCCATTTCCTTACAAACAAATAGTCAATTCTGGTCATGAAAATCTCTGGTATTCATCTTAGTATCTTACTGTGTACAGTCAACCATGGATTTTTTATTTACCTCTTTGACTTGATTACAAGTGCACGTAAAATTATTTAGGTGTTGCACTGTTTACACACTGCATCAATTTCATCTACCTTTATGTGAGCTAAAACAACAGTAAAGAACTTACAACAAGAACAACATTCACAGTACAGTCCCACAAATGGGTCCGAGGAGGCTGGGGTGTACGCAGACCTTGTAAACATAGATCAATTAGGTTGTATATATATTTTTAAAAATAGGTTGTATGTTGGGGATCTTTTTGTTAAATTTGGTCCAGGTATCTTGATCATGGTGATAACCACTCTTATGGTTGATATGTTGATTATTGCTATTTTTCTTACAACTTTTCAGGTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCTGTAATCACTCACATAGTGTACTTTTGCTAAATTTCAAGATATTGTTCTGTTTGAGTGTTCAGTTTTAACCTTTTTTTTCCCTTCATTCGTGGAAATACTTAAAGTTAATATTAGTAAATAGAGTATCAGATCATTTTTTAACGTTGAGTTTGATCATCTGTGATACTGAAGTATGTTGGTTACCATAATAACTCAAGTTTGGGGTATTTTTCTTCAGAATTCTGATCCTGGTTCAGTTTGGAGGATGTTTATTCTGCTGAATGTCCCATTGTTCCTGTTTTTATAAATTCTGCAGTATTCACTCTACTTGTTATCATAAAAGATTATGAGGACTATTTTAGTTAAATTGCTGAAAGAAATTGTGACATTTCTCTGTCCATTATAACCTTGCTGTTTTAGGTCCCCCCAAACGGATTTGGTATAGCTAAACAAGACCAAGCTTAAGCATAGGATTAAGTTGATCCTATACTTGTACTGGAGACTGTTGAATTCGGTTCAATGCCAAATGAGTTCTTTTCATTGGATTAAAAAGTTGTACTCTTCATTACGCATGCTGTTTTCTACTCACATTGTTACTGATTGATTTTGCAGTCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAGGTGTTGCACTTCTATTCTCTTAAGGTTGTTGATGATTTTAACCCTCTTGGTTGAGCTTTGGCTGATATAAGACATGTTTTACAGTGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAAGTAAGTCCAGTACTCTTTATTACGTATGTGATCAATTCTGTCAGACTCATGCTTTTTACATCAAGATTTGTCTATTTCAGAAGACTTCATGTTTGAAGTTCAGGTTCACTTTTCTGGATTTAATTTTGTTTATTCTATTTTTCTGGCTTAACTCTTTGCAATCAAGACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGGGTATTATTTTCCATCATGCTATTAGTACGACTGCTTGGTATGTTGTTTTCTGGACTAATATAGAATTTCTTTCATTTTATGTAGGAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGACTATATATCTGCCCAGTGTCTTAGGTAAAGCATTAGTTACTAAATTACTTTCATACATGTCGAAATGATTTGTTCAACTGTTGTTTGTTAAAGTATCAAATTAGGGATGTGAAAGCTGCAGCAAGTGTATTCTGGATCATTGGCATTTTTATTTTGAACATTTGGTTCGACATTTAGTAGGCATTCCTAGCGTTAACTACATCAACGATTTTAGGTTTACTTACTTCACTATAAGCTCGTTGTGTGTAAAATCATTAGAAAGTTACCTGAGATTCCCTCCGTCCACTTTTAATTGTCATGGTTTCTATTTTTAGAGTCAAACTAACATTTTAAGATGTATTGTTTCATCATATTAATATGCAAAAAATTGTAATTTATAGTACTTTTCATATAGTTTTTGAATATCTAATTTAAAATATCGAATTAACTAATCTAATTTAACTTTGAAAATTAGTCAAATTGACTTTTGAAAAGCGCAACATGACAAATAAAAGTGGACGGATGGAGTATTAAATTTTCAGTTGGAGGAAAGATATGCTCATATGGAGTATGAAATTTTCAGTTGGAGGAAAGATATGCTCATATGGAGTATTAAATTTTCAGTTGGAGGAAAGATATGCTCATAGCTTGTGCACAGAAACAAATTTATACTCCAATAGAAGAGCATGTCAGAATCCATGTTCTTGTCATTAATATCATGGTTTCTTTACTCCATAGTTACTTTGCGTCTCGGAAGTGTCATTGAATGGTTCTTTTTGTCTATGTTTTGGAAAAATGTCAAGTGCCAAATGTACTACTATGTTTTCTTTAAATGTTAAAAGATTTCAGTCTTGCTATGGAATTGCATGTAGAAATATGATGAAGTCTATTCAATTTATTTCAGCTTTCCCGTGTCTCTTATTGCAGGCGAAGGATAATGTACTACCATATGGAGATTTTCAAGAAAGTAGATGTCATTGTAACACCTACCACTGGGTAAACTAATTTCTGGCAACTGTTTTCCTTAAATCTTTTAGTTGATGGGAGTATCATGAAGTGGGTTTCTGAAATAGTTATGTTAAAAGAGAAGTAGAATTTTCTGAAGTCATCTAGCGATATTTGACATAAGATTGTACTTCAATGGAAGTCAATTTTAGATGATTGGTGCAAAATAGGAACTATATGTTTCTTTTTACTTCACGTGGATAATGCTTAATCAGTGAATGACTCTACAAGAGTATTGAGGATAAGGATACTTCTCATGTCTTTGAAGTTGTACACCATAATTTAGCTTGACGCTTGAAGTCACATTTGTCTGATGTTATGATCCACAGAAGATTTCCGTTGAATACCTCACTCGCGAAATTTACACATCGAATGGACATGTATATGTTCATGTAGAATGACCTATACTGAGGCTTTTTACCATTTCGCAGAATTTTAATTTTTTTCCCAAGTAAATTAGATCTTCCTCTTTTTTCAACTGAAGTAGATGGACCAAGGGTTTTTGTACGTGGTCATTTATTTGAATCTTTATGTGGACCCACAGACTCTTAAATCCATAAATTTTCTATTTTTACTTTTTTTTTTCAGAATGACAGCCCCAGAAATTCCA-GAAAGTGCTC-TTGCAGTTGGAGAGACAAATTTGCAAGTTGTAGGTAGGTTAACATCTGTTTCTATTTTTTTTTTTAAATTATCATTTACAAATAAAGGAACATCATTTATTACTTTGTAGTAGTCATTAGTAGTCCCTGGATATATTAAAAATGAGAATGCTATGCTATTTCACGAGAAATCTTATAAATAAAATATTTGATGTTTGACCGGTTGGTAGATTCAGAAATTTGATTTTTGTATGCATTAAAGACAGATTGTACTTTGGTAGTTAAACTCCTGAAGCGTTCTGTCTCAAAATATTATCAATTCTACAATAGTTCTTTTTTTTTTTGTTATGATGAGCAGCACCTCATGATGATCTGACTCTATTTAGACTAATTTCATTTGCTACTCTTTCAGCAAGACTAATGCAATTTGCTATGACAGC-AAATGTTCTTGGACTTCCGGCAATTTCTGTCCCT</genome_strand>
        <mrna_strand>CTCAGGTTCAGCTGCAATTGTTGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGGTGGAG.....................................................................................GTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTGAAAACAACATTTGGACGGACTGACCTGACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACAGTTGAGGATGCCATACTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATCTTGGGATCCTCTCCAGCTGATCGAATTCGGCTGAATCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCCCTTGTTTACCAGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAG....................................................................................TGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCTGTATGGGTGCAAA......................................................................................................................................................................ACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCCCATACTGTTACTTTTGGATCTGAATCACTGTGCTTACTGAATCCTGATTGCGAGGCTGG....................................................................................GAAAGGAGTTAGATTGACTAATGATACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGACTATATATCTGCCCAGTGCCTTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAGGATAATGTACTACCACATGGAGATTTTCAAGAAAGTAGATGTCATTGTAACACCTACCACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACAGCCCCAGAAATTCCAGGAAAGTGCTCTTTGCAGTTGGAGAGACAAATTTGCAAGTTGTAG......................................................................................................................................................................................................................................................................................................................................................................CAAGCCTAATGCAATTTGCTATGACAGCAAAATGTTCTTGGACTTTCGGCAATTTCTGTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228310" ref_strand="+" ref_description="SGN-E228310 [cLED-3-C1]">
      <seq>acaattattggacccatcacagctactgttgaggatgccatacttgtgtatgcagcaatctcgggatcctctccaactgatcgaattcagctgaatccttccatccctaattttcccgatttatcttccagtgagagttcaaatatcttgggatcacttaccttgggaaagtatacaaagtggtttaacgatgttagctcgaccgacatatctgataagtgtgaagatgtcctaaaccaactatttcgtcggtatgggtgcaaaacaacagagattgtcataccggagcttcgtgagctgcgcacagctcatactgttacttttggatctgaatcactgtcctttttgaatcctgattgcgaggctgggaaaggagttagattgactaatgacactcgcacaaatctggcacttttcagatcatttgcagcatctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="43635" stop="46054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43935" g_stop="43981" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43982" i_stop="44438" i_length="457">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44439" g_stop="44490" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="99" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44491" i_stop="45081" i_length="591">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45082" g_stop="45162" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="180" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45163" i_stop="45246" i_length="84">
            <donor d_prob="0.489" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45247" g_stop="45330" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="264" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45331" i_stop="45496" i_length="166">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45497" g_stop="45600" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="368" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45601" i_stop="45684" i_length="84">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45685" g_stop="45754" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="438" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E228310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43935" e_stop="43981"/>
          <exon e_start="44439" e_stop="44490"/>
          <exon e_start="45082" e_stop="45162"/>
          <exon e_start="45247" e_stop="45330"/>
          <exon e_start="45497" e_stop="45600"/>
          <exon e_start="45685" e_stop="45754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGTGTTAGTAATTGGGTTTACTGCCCATTTCCTTACAAACAAATAGTCAATTCTGGTCATGAAAATCTCTGGTATTCATCTTAGTATCTTACTGTGTACAGTCAACCATGGATTTTTTATTTACCTCTTTGACTTGATTACAAGTGCACGTAAAATTATTTAGGTGTTGCACTGTTTACACACTGCATCAATTTCATCTACCTTTATGTGAGCTAAAACAACAGTAAAGAACTTACAACAAGAACAACATTCACAGTACAGTCCCACAAATGGGTCCGAGGAGGCTGGGGTGTACGCAGACCTTGTAAACATAGATCAATTAGGTTGTATATATATTTTTAAAAATAGGTTGTATGTTGGGGATCTTTTTGTTAAATTTGGTCCAGGTATCTTGATCATGGTGATAACCACTCTTATGGTTGATATGTTGATTATTGCTATTTTTCTTACAACTTTTCAGGTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCTGTAATCACTCACATAGTGTACTTTTGCTAAATTTCAAGATATTGTTCTGTTTGAGTGTTCAGTTTTAACCTTTTTTTTCCCTTCATTCGTGGAAATACTTAAAGTTAATATTAGTAAATAGAGTATCAGATCATTTTTTAACGTTGAGTTTGATCATCTGTGATACTGAAGTATGTTGGTTACCATAATAACTCAAGTTTGGGGTATTTTTCTTCAGAATTCTGATCCTGGTTCAGTTTGGAGGATGTTTATTCTGCTGAATGTCCCATTGTTCCTGTTTTTATAAATTCTGCAGTATTCACTCTACTTGTTATCATAAAAGATTATGAGGACTATTTTAGTTAAATTGCTGAAAGAAATTGTGACATTTCTCTGTCCATTATAACCTTGCTGTTTTAGGTCCCCCCAAACGGATTTGGTATAGCTAAACAAGACCAAGCTTAAGCATAGGATTAAGTTGATCCTATACTTGTACTGGAGACTGTTGAATTCGGTTCAATGCCAAATGAGTTCTTTTCATTGGATTAAAAAGTTGTACTCTTCATTACGCATGCTGTTTTCTACTCACATTGTTACTGATTGATTTTGCAGTCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAGGTGTTGCACTTCTATTCTCTTAAGGTTGTTGATGATTTTAACCCTCTTGGTTGAGCTTTGGCTGATATAAGACATGTTTTACAGTGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAAGTAAGTCCAGTACTCTTTATTACGTATGTGATCAATTCTGTCAGACTCATGCTTTTTACATCAAGATTTGTCTATTTCAGAAGACTTCATGTTTGAAGTTCAGGTTCACTTTTCTGGATTTAATTTTGTTTATTCTATTTTTCTGGCTTAACTCTTTGCAATCAAGACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGGGTATTATTTTCCATCATGCTATTAGTACGACTGCTTGGTATGTTGTTTTCTGGACTAATATAGAATTTCTTTCATTTTATGTAGGAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGAC</genome_strand>
        <mrna_strand>ACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAG....................................................................................TGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAA......................................................................................................................................................................ACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGG....................................................................................GAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240847" ref_strand="+" ref_description="SGN-E240847 [cLED-24-F10]">
      <seq>caattattggacccatcacagctactgttgaggatgccatacttgtgtatgcagcaatctcgggatcctctccaactgatcgaattcagctgaatccttccatccctaattttcccgatttatcttccagtgagagttcaaatatcttgggatcacttaccttgggaaagtatacaaagtggtttaacgatgttagctcgaccgacatatctgataagtgtgaagatgtcctaaaccaactatttcgtcggtatgggtgcaaaacaacagagattgtcataccggagcttcgtgagctgcgcacagctcatactgttacttttggatctgaatcactgtcctttttgaatcctgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="43636" stop="45891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43936" g_stop="43981" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43982" i_stop="44438" i_length="457">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44439" g_stop="44490" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="98" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44491" i_stop="45081" i_length="591">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45082" g_stop="45162" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="179" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45163" i_stop="45246" i_length="84">
            <donor d_prob="0.489" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45247" g_stop="45330" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="263" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45331" i_stop="45496" i_length="166">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45497" g_stop="45591" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="358" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E240847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43936" e_stop="43981"/>
          <exon e_start="44439" e_stop="44490"/>
          <exon e_start="45082" e_stop="45162"/>
          <exon e_start="45247" e_stop="45330"/>
          <exon e_start="45497" e_stop="45591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGTGTTAGTAATTGGGTTTACTGCCCATTTCCTTACAAACAAATAGTCAATTCTGGTCATGAAAATCTCTGGTATTCATCTTAGTATCTTACTGTGTACAGTCAACCATGGATTTTTTATTTACCTCTTTGACTTGATTACAAGTGCACGTAAAATTATTTAGGTGTTGCACTGTTTACACACTGCATCAATTTCATCTACCTTTATGTGAGCTAAAACAACAGTAAAGAACTTACAACAAGAACAACATTCACAGTACAGTCCCACAAATGGGTCCGAGGAGGCTGGGGTGTACGCAGACCTTGTAAACATAGATCAATTAGGTTGTATATATATTTTTAAAAATAGGTTGTATGTTGGGGATCTTTTTGTTAAATTTGGTCCAGGTATCTTGATCATGGTGATAACCACTCTTATGGTTGATATGTTGATTATTGCTATTTTTCTTACAACTTTTCAGGTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCTGTAATCACTCACATAGTGTACTTTTGCTAAATTTCAAGATATTGTTCTGTTTGAGTGTTCAGTTTTAACCTTTTTTTTCCCTTCATTCGTGGAAATACTTAAAGTTAATATTAGTAAATAGAGTATCAGATCATTTTTTAACGTTGAGTTTGATCATCTGTGATACTGAAGTATGTTGGTTACCATAATAACTCAAGTTTGGGGTATTTTTCTTCAGAATTCTGATCCTGGTTCAGTTTGGAGGATGTTTATTCTGCTGAATGTCCCATTGTTCCTGTTTTTATAAATTCTGCAGTATTCACTCTACTTGTTATCATAAAAGATTATGAGGACTATTTTAGTTAAATTGCTGAAAGAAATTGTGACATTTCTCTGTCCATTATAACCTTGCTGTTTTAGGTCCCCCCAAACGGATTTGGTATAGCTAAACAAGACCAAGCTTAAGCATAGGATTAAGTTGATCCTATACTTGTACTGGAGACTGTTGAATTCGGTTCAATGCCAAATGAGTTCTTTTCATTGGATTAAAAAGTTGTACTCTTCATTACGCATGCTGTTTTCTACTCACATTGTTACTGATTGATTTTGCAGTCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAGGTGTTGCACTTCTATTCTCTTAAGGTTGTTGATGATTTTAACCCTCTTGGTTGAGCTTTGGCTGATATAAGACATGTTTTACAGTGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAAGTAAGTCCAGTACTCTTTATTACGTATGTGATCAATTCTGTCAGACTCATGCTTTTTACATCAAGATTTGTCTATTTCAGAAGACTTCATGTTTGAAGTTCAGGTTCACTTTTCTGGATTTAATTTTGTTTATTCTATTTTTCTGGCTTAACTCTTTGCAATCAAGACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTG</genome_strand>
        <mrna_strand>CAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAG....................................................................................TGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAA......................................................................................................................................................................ACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319141" ref_strand="+" ref_description="SGN-E319141 [cTOB-16-O5]">
      <seq>cctaattttcccgatttatcttccagtgagagttcaaatatcttgggatcacttaccttgggaaagtatacaaagtggtttaacgatgttagctcgaccgacatatctgataagtgtgaagatgtcctaaaccaactatttcgtcggtatgggtgcaaaacaactgatattgtcataccggatcttcgtgagctgcgcacatctcatactgttacttttggatctgaatcactgtcctttttgaatcctgattgcgaggctgggaaaggagttagattgactaatgacactcgcacaaatctggcacttttcagatcatttgcagcatctgactatatatctgcccagtgtcttatgcgaatgataatgtactaccatatggagattttcaagaaagtagatgtcattgtaacacctaccactggaatgacagccccagaaattccagaaagtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="44788" stop="47657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45088" g_stop="45162" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45163" i_stop="45246" i_length="84">
            <donor d_prob="0.489" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45247" g_stop="45330" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="159" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45331" i_stop="45496" i_length="166">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45497" g_stop="45600" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="263" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45601" i_stop="45684" i_length="84">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45685" g_stop="45777" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="356" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45778" i_stop="46659" i_length="882">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46660" g_stop="46728" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="425" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46729" i_stop="47325" i_length="597">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47326" g_stop="47357" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="457" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E319141" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45088" e_stop="45162"/>
          <exon e_start="45247" e_stop="45330"/>
          <exon e_start="45497" e_stop="45600"/>
          <exon e_start="45685" e_stop="45777"/>
          <exon e_start="46660" e_stop="46728"/>
          <exon e_start="47326" e_stop="47357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAGGTGTTGCACTTCTATTCTCTTAAGGTTGTTGATGATTTTAACCCTCTTGGTTGAGCTTTGGCTGATATAAGACATGTTTTACAGTGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAAGTAAGTCCAGTACTCTTTATTACGTATGTGATCAATTCTGTCAGACTCATGCTTTTTACATCAAGATTTGTCTATTTCAGAAGACTTCATGTTTGAAGTTCAGGTTCACTTTTCTGGATTTAATTTTGTTTATTCTATTTTTCTGGCTTAACTCTTTGCAATCAAGACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGGGTATTATTTTCCATCATGCTATTAGTACGACTGCTTGGTATGTTGTTTTCTGGACTAATATAGAATTTCTTTCATTTTATGTAGGAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGACTATATATCTGCCCAGTGTCTTAGGTAAAGCATTAGTTACTAAATTACTTTCATACATGTCGAAATGATTTGTTCAACTGTTGTTTGTTAAAGTATCAAATTAGGGATGTGAAAGCTGCAGCAAGTGTATTCTGGATCATTGGCATTTTTATTTTGAACATTTGGTTCGACATTTAGTAGGCATTCCTAGCGTTAACTACATCAACGATTTTAGGTTTACTTACTTCACTATAAGCTCGTTGTGTGTAAAATCATTAGAAAGTTACCTGAGATTCCCTCCGTCCACTTTTAATTGTCATGGTTTCTATTTTTAGAGTCAAACTAACATTTTAAGATGTATTGTTTCATCATATTAATATGCAAAAAATTGTAATTTATAGTACTTTTCATATAGTTTTTGAATATCTAATTTAAAATATCGAATTAACTAATCTAATTTAACTTTGAAAATTAGTCAAATTGACTTTTGAAAAGCGCAACATGACAAATAAAAGTGGACGGATGGAGTATTAAATTTTCAGTTGGAGGAAAGATATGCTCATATGGAGTATGAAATTTTCAGTTGGAGGAAAGATATGCTCATATGGAGTATTAAATTTTCAGTTGGAGGAAAGATATGCTCATAGCTTGTGCACAGAAACAAATTTATACTCCAATAGAAGAGCATGTCAGAATCCATGTTCTTGTCATTAATATCATGGTTTCTTTACTCCATAGTTACTTTGCGTCTCGGAAGTGTCATTGAATGGTTCTTTTTGTCTATGTTTTGGAAAAATGTCAAGTGCCAAATGTACTACTATGTTTTCTTTAAATGTTAAAAGATTTCAGTCTTGCTATGGAATTGCATGTAGAAATATGATGAAGTCTATTCAATTTATTTCAGCTTTCCCGTGTCTCTTATTGCAGGCGAAGGATAATGTACTACCATATGGAGATTTTCAAGAAAGTAGATGTCATTGTAACACCTACCACTGGGTAAACTAATTTCTGGCAACTGTTTTCCTTAAATCTTTTAGTTGATGGGAGTATCATGAAGTGGGTTTCTGAAATAGTTATGTTAAAAGAGAAGTAGAATTTTCTGAAGTCATCTAGCGATATTTGACATAAGATTGTACTTCAATGGAAGTCAATTTTAGATGATTGGTGCAAAATAGGAACTATATGTTTCTTTTTACTTCACGTGGATAATGCTTAATCAGTGAATGACTCTACAAGAGTATTGAGGATAAGGATACTTCTCATGTCTTTGAAGTTGTACACCATAATTTAGCTTGACGCTTGAAGTCACATTTGTCTGATGTTATGATCCACAGAAGATTTCCGTTGAATACCTCACTCGCGAAATTTACACATCGAATGGACATGTATATGTTCATGTAGAATGACCTATACTGAGGCTTTTTACCATTTCGCAGAATTTTAATTTTTTTCCCAAGTAAATTAGATCTTCCTCTTTTTTCAACTGAAGTAGATGGACCAAGGGTTTTTGTACGTGGTCATTTATTTGAATCTTTATGTGGACCCACAGACTCTTAAATCCATAAATTTTCTATTTTTACTTTTTTTTTTCAGAATGACAGCCCCAGAAATTCCAGAAAGTGCTC</genome_strand>
        <mrna_strand>CCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAG....................................................................................TGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAA......................................................................................................................................................................ACAACTGATATTGTCATACCGGATCTTCGTGAGCTGCGCACATCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGG....................................................................................GAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGACTATATATCTGCCCAGTGTCTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAATGATAATGTACTACCATATGGAGATTTTCAAGAAAGTAGATGTCATTGTAACACCTACCACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACAGCCCCAGAAATTCCAGAAAGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231482" ref_strand="+" ref_description="SGN-E231482 [cLED-4-I6]">
      <seq>ttaactctttgcaatcaagacaacagagattgtcataccggagcttcgtgagctgcgcacagctcatactgttacttttggatctgaatcactgtcctttttgaatcctgattgcgaggctgggaaaggagttagattgactaatgacactcgcacaaatctggcacttttcagatcatttgcagcatctgactatatatctgcccagtgtcttaggcgaaggataatgtactaccatatggagattttcaagaaagtagatgtcattgtaacacctaccactggaatgacagccccagaaattccagaaagtgctcttgcagttggagagacaaatttgcaagttgtagcaagactaatgcaatttgctatgacagcaaatgttcttggacttcccgcaatttctgtccctattggtcatgataagcaaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="45178" stop="48545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45478" g_stop="45600" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45601" i_stop="45684" i_length="84">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45685" g_stop="45777" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="216" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45778" i_stop="46659" i_length="882">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46660" g_stop="46728" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="285" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46729" i_stop="47325" i_length="597">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47326" g_stop="47390" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="350" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47391" i_stop="47748" i_length="358">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47749" g_stop="47810" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="412" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47811" i_stop="48223" i_length="413">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48224" g_stop="48245" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="434" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E231482" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45478" e_stop="45600"/>
          <exon e_start="45685" e_stop="45777"/>
          <exon e_start="46660" e_stop="46728"/>
          <exon e_start="47326" e_stop="47390"/>
          <exon e_start="47749" e_stop="47810"/>
          <exon e_start="48224" e_stop="48245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTCTTTGCAATCAAGACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGGGTATTATTTTCCATCATGCTATTAGTACGACTGCTTGGTATGTTGTTTTCTGGACTAATATAGAATTTCTTTCATTTTATGTAGGAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGACTATATATCTGCCCAGTGTCTTAGGTAAAGCATTAGTTACTAAATTACTTTCATACATGTCGAAATGATTTGTTCAACTGTTGTTTGTTAAAGTATCAAATTAGGGATGTGAAAGCTGCAGCAAGTGTATTCTGGATCATTGGCATTTTTATTTTGAACATTTGGTTCGACATTTAGTAGGCATTCCTAGCGTTAACTACATCAACGATTTTAGGTTTACTTACTTCACTATAAGCTCGTTGTGTGTAAAATCATTAGAAAGTTACCTGAGATTCCCTCCGTCCACTTTTAATTGTCATGGTTTCTATTTTTAGAGTCAAACTAACATTTTAAGATGTATTGTTTCATCATATTAATATGCAAAAAATTGTAATTTATAGTACTTTTCATATAGTTTTTGAATATCTAATTTAAAATATCGAATTAACTAATCTAATTTAACTTTGAAAATTAGTCAAATTGACTTTTGAAAAGCGCAACATGACAAATAAAAGTGGACGGATGGAGTATTAAATTTTCAGTTGGAGGAAAGATATGCTCATATGGAGTATGAAATTTTCAGTTGGAGGAAAGATATGCTCATATGGAGTATTAAATTTTCAGTTGGAGGAAAGATATGCTCATAGCTTGTGCACAGAAACAAATTTATACTCCAATAGAAGAGCATGTCAGAATCCATGTTCTTGTCATTAATATCATGGTTTCTTTACTCCATAGTTACTTTGCGTCTCGGAAGTGTCATTGAATGGTTCTTTTTGTCTATGTTTTGGAAAAATGTCAAGTGCCAAATGTACTACTATGTTTTCTTTAAATGTTAAAAGATTTCAGTCTTGCTATGGAATTGCATGTAGAAATATGATGAAGTCTATTCAATTTATTTCAGCTTTCCCGTGTCTCTTATTGCAGGCGAAGGATAATGTACTACCATATGGAGATTTTCAAGAAAGTAGATGTCATTGTAACACCTACCACTGGGTAAACTAATTTCTGGCAACTGTTTTCCTTAAATCTTTTAGTTGATGGGAGTATCATGAAGTGGGTTTCTGAAATAGTTATGTTAAAAGAGAAGTAGAATTTTCTGAAGTCATCTAGCGATATTTGACATAAGATTGTACTTCAATGGAAGTCAATTTTAGATGATTGGTGCAAAATAGGAACTATATGTTTCTTTTTACTTCACGTGGATAATGCTTAATCAGTGAATGACTCTACAAGAGTATTGAGGATAAGGATACTTCTCATGTCTTTGAAGTTGTACACCATAATTTAGCTTGACGCTTGAAGTCACATTTGTCTGATGTTATGATCCACAGAAGATTTCCGTTGAATACCTCACTCGCGAAATTTACACATCGAATGGACATGTATATGTTCATGTAGAATGACCTATACTGAGGCTTTTTACCATTTCGCAGAATTTTAATTTTTTTCCCAAGTAAATTAGATCTTCCTCTTTTTTCAACTGAAGTAGATGGACCAAGGGTTTTTGTACGTGGTCATTTATTTGAATCTTTATGTGGACCCACAGACTCTTAAATCCATAAATTTTCTATTTTTACTTTTTTTTTTCAGAATGACAGCCCCAGAAATTCCAGAAAGTGCTCTTGCAGTTGGAGAGACAAATTTGCAAGTTGTAGGTAGGTTAACATCTGTTTCTATTTTTTTTTTTAAATTATCATTTACAAATAAAGGAACATCATTTATTACTTTGTAGTAGTCATTAGTAGTCCCTGGATATATTAAAAATGAGAATGCTATGCTATTTCACGAGAAATCTTATAAATAAAATATTTGATGTTTGACCGGTTGGTAGATTCAGAAATTTGATTTTTGTATGCATTAAAGACAGATTGTACTTTGGTAGTTAAACTCCTGAAGCGTTCTGTCTCAAAATATTATCAATTCTACAATAGTTCTTTTTTTTTTTGTTATGATGAGCAGCACCTCATGATGATCTGACTCTATTTAGACTAATTTCATTTGCTACTCTTTCAGCAAGACTAATGCAATTTGCTATGACAGCAAATGTTCTTGGACTTCCGGCAATTTCTGTCCCTGTAAGTTATATTCATCTTTTTCCTCTTAGGCAGTTATCTGAGAGTAAATCTCATTGAAGGATATGGAATAGAAGGACAAGAACCTGCATGTTGATAATATACAATCAGTGCTCCTATTCTAAGCATTTCAACTGTTGGTTCTTACTGCATGCTGGTTTACTGTCGAGGACCTGCTCACCTTCTTTCCAATTAATATTGACACAGCAGTAAAAATGAATGACTGAAAACTCTCTCTCTTTACAACTTCCTCCATTTGTATTTGCACAGCCTATGTTCGTTCCCTTCAAAACTAAGATGTCTCTTTGATTGATGGCTACCACCATCGGATTCCAAAACTCGTGGATGTCAAATATCACTCAACATCACGTGTTTTTTAACTATATTATTGATTTACTTTTCTTTTCACGTGTTAGATTGGTCATGATAAGCAAGGAC</genome_strand>
        <mrna_strand>TTAACTCTTTGCAATCAAGACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGG....................................................................................GAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGACTATATATCTGCCCAGTGTCTTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAGGATAATGTACTACCATATGGAGATTTTCAAGAAAGTAGATGTCATTGTAACACCTACCACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACAGCCCCAGAAATTCCAGAAAGTGCTCTTGCAGTTGGAGAGACAAATTTGCAAGTTGTAG......................................................................................................................................................................................................................................................................................................................................................................CAAGACTAATGCAATTTGCTATGACAGCAAATGTTCTTGGACTTCCCGCAATTTCTGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTCATGATAAGCAAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239077" ref_strand="+" ref_description="SGN-E239077 [cLEL-9-K20](-)">
      <seq>gtgctcttgcagttggagagacaaatttgcaagttgtagcaagactaatgcaatttgctatgccagcaaatgttcttggacttccggcaatttctgtccctattggtcatgataagcaaggacttccaataggcttgcaacttattggtcgtccgtggtgtgaagcttcaatcttgcgtttagctgttgcagttgaggaaatgtctgcagaatataggaagaagccagtggagttctatgacatcttgaaagggaacggttttcacgactccactgaggaataagttttaagcctaacctcaaagagaaaacaagattttatcacagtgtgcttagcgtttttgtgttttgtatctcttttaaaatagcagttaaatttcttttttggccatgaaactcacgcacatcttgtttgtataactttgttcttaattatctcactcttnccataaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="47052" stop="48961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47352" g_stop="47390" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47391" i_stop="47748" i_length="358">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47749" g_stop="47810" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="101" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47811" i_stop="48223" i_length="413">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48224" g_stop="48319" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="197" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48320" i_stop="48405" i_length="86">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48406" g_stop="48660" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="452" r_length="255" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="453" polyA_stop="475"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E239077" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47352" e_stop="47390"/>
          <exon e_start="47749" e_stop="47810"/>
          <exon e_start="48224" e_stop="48319"/>
          <exon e_start="48406" e_stop="48660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTCTTGCAGTTGGAGAGACAAATTTGCAAGTTGTAGGTAGGTTAACATCTGTTTCTATTTTTTTTTTTAAATTATCATTTACAAATAAAGGAACATCATTTATTACTTTGTAGTAGTCATTAGTAGTCCCTGGATATATTAAAAATGAGAATGCTATGCTATTTCACGAGAAATCTTATAAATAAAATATTTGATGTTTGACCGGTTGGTAGATTCAGAAATTTGATTTTTGTATGCATTAAAGACAGATTGTACTTTGGTAGTTAAACTCCTGAAGCGTTCTGTCTCAAAATATTATCAATTCTACAATAGTTCTTTTTTTTTTTGTTATGATGAGCAGCACCTCATGATGATCTGACTCTATTTAGACTAATTTCATTTGCTACTCTTTCAGCAAGACTAATGCAATTTGCTATGACAGCAAATGTTCTTGGACTTCCGGCAATTTCTGTCCCTGTAAGTTATATTCATCTTTTTCCTCTTAGGCAGTTATCTGAGAGTAAATCTCATTGAAGGATATGGAATAGAAGGACAAGAACCTGCATGTTGATAATATACAATCAGTGCTCCTATTCTAAGCATTTCAACTGTTGGTTCTTACTGCATGCTGGTTTACTGTCGAGGACCTGCTCACCTTCTTTCCAATTAATATTGACACAGCAGTAAAAATGAATGACTGAAAACTCTCTCTCTTTACAACTTCCTCCATTTGTATTTGCACAGCCTATGTTCGTTCCCTTCAAAACTAAGATGTCTCTTTGATTGATGGCTACCACCATCGGATTCCAAAACTCGTGGATGTCAAATATCACTCAACATCACGTGTTTTTTAACTATATTATTGATTTACTTTTCTTTTCACGTGTTAGATTGGTCATGATAAGCAAGGACTTCCAATAGGCTTGCAACTTATTGGTCGTCCGTGGTGTGAAGCTTCAATCTTGCGTTTAGCTGTTGCAGTTGAGGTATTCTCCTCGCCCCAACTAACAAGTAACAAACTGCTAAAATGTTCAAAAAGCATTGGAATGAGATTTTGACTTTGTGTTTTCAGGAAATGTCTGCAGAATATAGGAAGAAGCCAGTGGAGTTCTATGACATCTTGAAAGGGAACGGTTTTCACGACTCCACTGAGGAATAAGTTTTAAGCCTAACCTCAAAGAGAAAACAAGATTTTATCACAGTGTGCTTAGCGTTTTTGTGTTTTGTATCTCTTTTAAAATAGCAGTTAAATTTCTTTTTTGGCCATGAAACTCACGCACATCTTGTTTGTATAACTTTGTTCTTAATTATCTCACTCTTACCATAG</genome_strand>
        <mrna_strand>GTGCTCTTGCAGTTGGAGAGACAAATTTGCAAGTTGTAG......................................................................................................................................................................................................................................................................................................................................................................CAAGACTAATGCAATTTGCTATGCCAGCAAATGTTCTTGGACTTCCGGCAATTTCTGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTCATGATAAGCAAGGACTTCCAATAGGCTTGCAACTTATTGGTCGTCCGTGGTGTGAAGCTTCAATCTTGCGTTTAGCTGTTGCAGTTGAG......................................................................................GAAATGTCTGCAGAATATAGGAAGAAGCCAGTGGAGTTCTATGACATCTTGAAAGGGAACGGTTTTCACGACTCCACTGAGGAATAAGTTTTAAGCCTAACCTCAAAGAGAAAACAAGATTTTATCACAGTGTGCTTAGCGTTTTTGTGTTTTGTATCTCTTTTAAAATAGCAGTTAAATTTCTTTTTTGGCCATGAAACTCACGCACATCTTGTTTGTATAACTTTGTTCTTAATTATCTCACTCTTNCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239284" ref_strand="+" ref_description="SGN-E239284 [cLEL-9-K20](-)">
      <seq>gactaatgcaatttgctatgacagcaaatgttcttggacttccggcaatttctgtccctattggtcatgataagcaaggacttccaataggcttgcaacttattggtcgtccgtggtgtgaagcttcaatcttgcgtttagctgttgcagttgaggaaatgtctgcagaatataggaagaagccagtggagttctatgacatcttgaaagggaacggttttcacgactccactgaggaataagttttaagcctaacctcaaagagaaaacaagattttatcccagtgtgcttagcgtttttgtgttttgtatctcttttaaaatagcagttaaatttcttttttggccatgaaactcacgcacatcttgtttgtataactttgttcttaattatctcactcttaccataaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="47452" stop="48961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47752" g_stop="47810" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47811" i_stop="48223" i_length="413">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48224" g_stop="48319" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="155" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48320" i_stop="48405" i_length="86">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48406" g_stop="48660" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="410" r_length="255" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="433"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E239284" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47752" e_stop="47810"/>
          <exon e_start="48224" e_stop="48319"/>
          <exon e_start="48406" e_stop="48660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAATGCAATTTGCTATGACAGCAAATGTTCTTGGACTTCCGGCAATTTCTGTCCCTGTAAGTTATATTCATCTTTTTCCTCTTAGGCAGTTATCTGAGAGTAAATCTCATTGAAGGATATGGAATAGAAGGACAAGAACCTGCATGTTGATAATATACAATCAGTGCTCCTATTCTAAGCATTTCAACTGTTGGTTCTTACTGCATGCTGGTTTACTGTCGAGGACCTGCTCACCTTCTTTCCAATTAATATTGACACAGCAGTAAAAATGAATGACTGAAAACTCTCTCTCTTTACAACTTCCTCCATTTGTATTTGCACAGCCTATGTTCGTTCCCTTCAAAACTAAGATGTCTCTTTGATTGATGGCTACCACCATCGGATTCCAAAACTCGTGGATGTCAAATATCACTCAACATCACGTGTTTTTTAACTATATTATTGATTTACTTTTCTTTTCACGTGTTAGATTGGTCATGATAAGCAAGGACTTCCAATAGGCTTGCAACTTATTGGTCGTCCGTGGTGTGAAGCTTCAATCTTGCGTTTAGCTGTTGCAGTTGAGGTATTCTCCTCGCCCCAACTAACAAGTAACAAACTGCTAAAATGTTCAAAAAGCATTGGAATGAGATTTTGACTTTGTGTTTTCAGGAAATGTCTGCAGAATATAGGAAGAAGCCAGTGGAGTTCTATGACATCTTGAAAGGGAACGGTTTTCACGACTCCACTGAGGAATAAGTTTTAAGCCTAACCTCAAAGAGAAAACAAGATTTTATCACAGTGTGCTTAGCGTTTTTGTGTTTTGTATCTCTTTTAAAATAGCAGTTAAATTTCTTTTTTGGCCATGAAACTCACGCACATCTTGTTTGTATAACTTTGTTCTTAATTATCTCACTCTTACCATAG</genome_strand>
        <mrna_strand>GACTAATGCAATTTGCTATGACAGCAAATGTTCTTGGACTTCCGGCAATTTCTGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTCATGATAAGCAAGGACTTCCAATAGGCTTGCAACTTATTGGTCGTCCGTGGTGTGAAGCTTCAATCTTGCGTTTAGCTGTTGCAGTTGAG......................................................................................GAAATGTCTGCAGAATATAGGAAGAAGCCAGTGGAGTTCTATGACATCTTGAAAGGGAACGGTTTTCACGACTCCACTGAGGAATAAGTTTTAAGCCTAACCTCAAAGAGAAAACAAGATTTTATCCCAGTGTGCTTAGCGTTTTTGTGTTTTGTATCTCTTTTAAAATAGCAGTTAAATTTCTTTTTTGGCCATGAAACTCACGCACATCTTGTTTGTATAACTTTGTTCTTAATTATCTCACTCTTACCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698408" ref_strand="+" ref_description="SGN-E698408 [FA06AH04]">
      <seq>tcttagctatagaagagtctaacaacaagaatccactggcaccactactaatttcttatgatcctgatgaagtcagaaggcaagctgctgcttccacacagagatttaaagaaggaagtgaattatcaatcctggatggtatcttcatagcagttaaggatgacattgattgctatccatatccatcaaagggtggcgcaacttggtttcacgagcttcgtcaagttaagaaagatgctgtctgtgtctcaagattacgaaactgcggtgcagttatggttggaaagacaaatatgcatgaattggccctgggaacaactggaaataatgcaaattttgggacaaccaggaatccacatgctccagataggtacacaggcgggtcttcctcaggctctgcagctattgtagcttgtggattgtgttctgctgcattacgaacagatggaggaggttcagttcggattccttcttccctttgtggtgtggtgggcttgaacacaacatatggaaggactgacatgaaagggttgctctatcatactggaacagcggcaattgttggacctatcacagcaactgttgaggatgccatactggtgtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="50452" stop="52579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50752" g_stop="50865" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="51011" i_length="146">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51012" g_stop="51089" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="192" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51090" i_stop="51161" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51162" g_stop="51309" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="340" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51310" i_stop="51563" i_length="254">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51564" g_stop="51676" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="453" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51677" i_stop="51756" i_length="80">
            <donor d_prob="0.428" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51757" g_stop="51832" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="529" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51833" i_stop="52202" i_length="370">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52203" g_stop="52274" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="601" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52275" i_stop="52517" i_length="243">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.584" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52518" g_stop="52523" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="607" r_length="6" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E698408" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50752" e_stop="50865"/>
          <exon e_start="51012" e_stop="51089"/>
          <exon e_start="51162" e_stop="51309"/>
          <exon e_start="51564" e_stop="51676"/>
          <exon e_start="51757" e_stop="51832"/>
          <exon e_start="52203" e_stop="52274"/>
          <exon e_start="52518" e_stop="52523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAGCTATAGAAGAGTCTAACAACAAGAATCCACTGGCACCACTACTAATTTCTTATGATCCTGATGAAGTCAGAAGGCAAGCTGCTGCTTCCACACAGAGATTTAAAGAAGGTACTATGGTGTATATTTTTTTATGGTCATATACAGAGACATGTATACTGTTATCCCATTGTAATTCAAAAATATTCTTCCTTCTAGAGTGCTATCTGCATTTGACTCTACTTAGCTACTATTTCTTAGCCGCTGGGTTTGTGCAGGAAGTGAATTATCAATCCTGGATGGTATCTTCATAGCAGTTAAGGATGACATTGATTGCTATCCATATCCATCAAAGGGTATGTGCTCTAGTTCTAGTCACCAAAGTATAGTTCTTTGCCAGATTTAGTTTCAAACTTAATGTCTAACAGGTGGCGCAACTTGGTTTCACGAGCTTCGTCAAGTTAAGAAAGATGCTGTCTGTGTCTCAAGATTACGAAACTGCGGTGCAGTTATGGTTGGAAAGACAAATATGCATGAATTGGCCCTGGGAACAACTGGAAATAATGCAAATTTTGGGTGAGTTAAGCTTATAAGCTGTACACAATAGACAAGAAATTCCCATAGTTTCATAATAAGTAAATCATGATGCTAAAGCTCACTAAACATTTAATCAAGTCACACATTGAGTCAAATATTAAATGACCTTGGGGGGGGGGGGGGGAGAGATTGCTATGTACGTGAATTCTGACAATTTTAACTTTCCACTCCATTTAGGAAATGTTTTTTCATTGTAACAACAGTTTGGGTGGGTGGATTTCTTTCTATGACAGGACAACCAGGAATCCACATGCTCCAGATAGGTACACAGGCGGGTCTTCCTCAGGCTCTGCAGCTATTGTAGCTTGTGGATTGTGTTCTGCTGCATTAGGAACAGATGGAGGAGGTTGTCTATGATACCATGTAGCTCGTGAGTCATCTTATGAAATATTTGTATGTCATGTTTGCTAAAGTTTATTTTTACAGGTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTGGTGGGCTTGAAGACAACATATGGAAGGACTGACATGAAAGGGTGAGCTCCTATTGTGGAGGGGGTCTGAATATATATGCCTGCATTCTGGTCTCCTTAAACCATGGTTTGGCGGGGGGGGGGGGGGTAATTAGTGATCCGGTACTTAAGTTGGTGGGAGGTACATGTACCTGGTGAATTAGTTGATGTACGCGCAGGCTGGCCCCAACATGATTGTTGTAAATAAAAGATTTTTTTCTTGAAGTTCCTTCTATGGCAAAATGAATATTCTAAGTTCTGCCTGATTGTAGTAATTATATGTGCAAATATATTGCTTTTTGTCAACTAACTTGTAAATCTGCTATACTTTGTTGTTTTCGCACTAGCTTTGTAACTCTTATAGGTAACTTTTTAGTCTCATCATTTTTGCCAGGTTGCTCTATCATAGTGGAACAGTGGCAATTGTTGGACCTATCACAGCAACTGTTGAGGATGCCATACTGGTGTAAGTAGTTGAACAGTTTTGAATGTTCCAGAGTGTACTTGTTTTGAAGTCCAGTTCTTATAGTTCTATAAATAGTGATGTGACAATGCAAATTGTCCTTGACTATCACCACTGGGGAAGATTGTGCAGTCATGTAGCTTGTGAGAACAACTCATTGTAGTACTTGAATTTATATATGCCCGTGAAGTGCTACTATCAGCAGAAGGTTTGATTATGTTTGTCTTAGTATTTGTGTGTATGCAGCTCTGC</genome_strand>
        <mrna_strand>TCTTAGCTATAGAAGAGTCTAACAACAAGAATCCACTGGCACCACTACTAATTTCTTATGATCCTGATGAAGTCAGAAGGCAAGCTGCTGCTTCCACACAGAGATTTAAAGAAG..................................................................................................................................................GAAGTGAATTATCAATCCTGGATGGTATCTTCATAGCAGTTAAGGATGACATTGATTGCTATCCATATCCATCAAAGG........................................................................GTGGCGCAACTTGGTTTCACGAGCTTCGTCAAGTTAAGAAAGATGCTGTCTGTGTCTCAAGATTACGAAACTGCGGTGCAGTTATGGTTGGAAAGACAAATATGCATGAATTGGCCCTGGGAACAACTGGAAATAATGCAAATTTTGG..............................................................................................................................................................................................................................................................GACAACCAGGAATCCACATGCTCCAGATAGGTACACAGGCGGGTCTTCCTCAGGCTCTGCAGCTATTGTAGCTTGTGGATTGTGTTCTGCTGCATTACGAACAGATGGAGGAG................................................................................GTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTGGTGGGCTTGAACACAACATATGGAAGGACTGACATGAAAGG..................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCTATCATACTGGAACAGCGGCAATTGTTGGACCTATCACAGCAACTGTTGAGGATGCCATACTGGT...................................................................................................................................................................................................................................................GTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709419" ref_strand="+" ref_description="SGN-E709419 [FA51DH05]">
      <seq>cgaaactgcggtgcagttatggttggaaagacaaatatgcatgaattggccctgggaacaactggaaataatgcaaattttgggacaaccaggaatccacatgctccagataggtacacaggcgggtcttcctcaggctctgcagctattgtagcttgtggattgtgttctgctgcattaggaacagatggaggaggttcagttcggattccttcttccctttgtggtgtggtgggcttgaagacaacatatggaaggactgacatgaaagggttgctctatcatagtggaacagtggcaattgttggacctatcacagcaactgttgaggatgccatactggtgtatgctgcaattttaggatcttcgcctgctgagagagtttctttgaaaccggccctcccttgtttaccaaatttaagttcatgtgagaactggtgctctatgggatcactgcgcttggggaagtacactgagtggttcaatgatgttttctcaactgaaatatctgataagtgcgaggatattctaaaccagctatcagaaaaacatgagtgcaacacgatacagattgtaataccagagttgcatgagatgttcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="50927" stop="54367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51227" g_stop="51309" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51310" i_stop="51563" i_length="254">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51564" g_stop="51676" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="196" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51677" i_stop="51756" i_length="80">
            <donor d_prob="0.428" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51757" g_stop="51832" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="272" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51833" i_stop="52202" i_length="370">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52203" g_stop="52274" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="344" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52275" i_stop="52946" i_length="672">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52947" g_stop="52998" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="396" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52999" i_stop="53568" i_length="570">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.373" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53569" g_stop="53649" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="477" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53650" i_stop="53731" i_length="82">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53732" g_stop="53815" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="561" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="53816" i_stop="54024" i_length="209">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54025" g_stop="54067" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="604" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E709419" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51227" e_stop="51309"/>
          <exon e_start="51564" e_stop="51676"/>
          <exon e_start="51757" e_stop="51832"/>
          <exon e_start="52203" e_stop="52274"/>
          <exon e_start="52947" e_stop="52998"/>
          <exon e_start="53569" e_stop="53649"/>
          <exon e_start="53732" e_stop="53815"/>
          <exon e_start="54025" e_stop="54067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACTGCGGTGCAGTTATGGTTGGAAAGACAAATATGCATGAATTGGCCCTGGGAACAACTGGAAATAATGCAAATTTTGGGTGAGTTAAGCTTATAAGCTGTACACAATAGACAAGAAATTCCCATAGTTTCATAATAAGTAAATCATGATGCTAAAGCTCACTAAACATTTAATCAAGTCACACATTGAGTCAAATATTAAATGACCTTGGGGGGGGGGGGGGGAGAGATTGCTATGTACGTGAATTCTGACAATTTTAACTTTCCACTCCATTTAGGAAATGTTTTTTCATTGTAACAACAGTTTGGGTGGGTGGATTTCTTTCTATGACAGGACAACCAGGAATCCACATGCTCCAGATAGGTACACAGGCGGGTCTTCCTCAGGCTCTGCAGCTATTGTAGCTTGTGGATTGTGTTCTGCTGCATTAGGAACAGATGGAGGAGGTTGTCTATGATACCATGTAGCTCGTGAGTCATCTTATGAAATATTTGTATGTCATGTTTGCTAAAGTTTATTTTTACAGGTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTGGTGGGCTTGAAGACAACATATGGAAGGACTGACATGAAAGGGTGAGCTCCTATTGTGGAGGGGGTCTGAATATATATGCCTGCATTCTGGTCTCCTTAAACCATGGTTTGGCGGGGGGGGGGGGGGTAATTAGTGATCCGGTACTTAAGTTGGTGGGAGGTACATGTACCTGGTGAATTAGTTGATGTACGCGCAGGCTGGCCCCAACATGATTGTTGTAAATAAAAGATTTTTTTCTTGAAGTTCCTTCTATGGCAAAATGAATATTCTAAGTTCTGCCTGATTGTAGTAATTATATGTGCAAATATATTGCTTTTTGTCAACTAACTTGTAAATCTGCTATACTTTGTTGTTTTCGCACTAGCTTTGTAACTCTTATAGGTAACTTTTTAGTCTCATCATTTTTGCCAGGTTGCTCTATCATAGTGGAACAGTGGCAATTGTTGGACCTATCACAGCAACTGTTGAGGATGCCATACTGGTGTAAGTAGTTGAACAGTTTTGAATGTTCCAGAGTGTACTTGTTTTGAAGTCCAGTTCTTATAGTTCTATAAATAGTGATGTGACAATGCAAATTGTCCTTGACTATCACCACTGGGGAAGATTGTGCAGTCATGTAGCTTGTGAGAACAACTCATTGTAGTACTTGAATTTATATATGCCCGTGAAGTGCTACTATCAGCAGAAGGTTTGATTATGTTTGTCTTAGTATTTGTGTGTATGCAGCTCTGCCTTATTTTGCTTAAATCTACTCTTCAAAAAATCTTAGAGGGTTTATCTCCTTTTATCTTGGGATGGGACAGAGTCCGATTCCTACCCTATTTATGCTTTGAGAGATGAAAGAAGTAAATATACAAGATTCCTTCCTCCAACCGTGCGAGTTAATCAACCTATCAATCAACTACTCCTTAATTTCAAACTAATCAGGATTTTTCTACTTTTTGCCTTTAATGAGCTTAGATTTTATCTTGGGATGGGACAGAGTCCGATTCCTACACTATTTATGCTTTGAGAGATGAAAGAAGTTAATATACAAGATTCCTTCCTCCAACCATGCGAGTTAATCAACCTATCAATCAACTACTCCTTAATTTCAAACTAATCAGGATTTTTCTACTTTTTCCTGAAATCTAAGTTGTGATATCTTACTGTCAGGTATGCTGCAATTTTAGGATCTTCGCCTGCTGAGAGAGTTTCTTTGAAACCGGTAATTACCCAAGAATATAGCATGCTCAAATCTAATGCTTCCTTTAAAAAATGAAATCGTCTATTCATTAAAATATCACTGAATACAAATTGATTGACCATCTGTTCTAGTTTCTTCAGTATCATAAAAAACCACAAGATATCTAAAGAGGAGAGTTATACAACTTCTTAGTTTTGGGAACCCTTATAGTATGTAAACCTTGGAGAAAAAGGCTTCTTGAGTGGTAGTTTCAGTCTTTTTCTGGTCTCTGGATAAATTCTGCAGATAGAAATCCTGAAACTGTGCAACTCCTGTAATAGCCAGGTTTACGTGAATTACAATATTGAAGGAAGCGACTTCTAGCTGATGTAGTAGGACCTAAACATCAGCTCTTGAGACTACTGAGAAGAGGTTGATCTAACTACTTTTTGTAGTTTAGATGAACTAGGGATCTTTGTACTTCTTATTCACATTATTCTTGACCTATGTTTCATTTTGCAATCGGTAATTTTCACCTTATGAGTTTCAGACCTAAGTTGTGCATGTGCCCGTTCCATTAAATTCCTTTAGAGTTTATTTACTATGTTTCAGGCCCTCCCTTGTTTACCAAATTTAAGTTCATGTGAGAACTGGTGCTCTATGGGATCACTGCGCTTGGGGAAGTACACTGAGGTAATTGCTTTTCTGGTTAAGACATGTCTGAAATGTTACTTTCTTGTAACTATTAAATTGTCTCTTGATTTTGTTACTTCAGTGGTTCAATGATGTTTTCTCAACTGAAATATCTGATAAGTGTGAGGATATTCTAAACCAGCTATCAGAAAAACATGAGTGCAAAGTAAGTTTATTTCCCATATCCAATTTCTTGGTTAAGTTTATTACCCATATCCAATTCTTTAGTTATGTCAAGGAATTGTCCCTGTTCATCTGCCAACTTGCTTGCATAGAGTACGGGGTCTAGTGAGCATCAATTTTTACTAACTACTTTCTTTCTATCTAGCTTTTTCCTATTTCTAAAAGGGTTTGTTTTTCTTTCCTTAATTGAAGACGATAGAGATTGTAATACCAGAGTTGCATGAGATGTTCATTG</genome_strand>
        <mrna_strand>CGAAACTGCGGTGCAGTTATGGTTGGAAAGACAAATATGCATGAATTGGCCCTGGGAACAACTGGAAATAATGCAAATTTTGG..............................................................................................................................................................................................................................................................GACAACCAGGAATCCACATGCTCCAGATAGGTACACAGGCGGGTCTTCCTCAGGCTCTGCAGCTATTGTAGCTTGTGGATTGTGTTCTGCTGCATTAGGAACAGATGGAGGAG................................................................................GTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTGGTGGGCTTGAAGACAACATATGGAAGGACTGACATGAAAGG..................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCTATCATAGTGGAACAGTGGCAATTGTTGGACCTATCACAGCAACTGTTGAGGATGCCATACTGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCTGCAATTTTAGGATCTTCGCCTGCTGAGAGAGTTTCTTTGAAACCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTCCCTTGTTTACCAAATTTAAGTTCATGTGAGAACTGGTGCTCTATGGGATCACTGCGCTTGGGGAAGTACACTGAG..................................................................................TGGTTCAATGATGTTTTCTCAACTGAAATATCTGATAAGTGCGAGGATATTCTAAACCAGCTATCAGAAAAACATGAGTGCAAC.................................................................................................................................................................................................................ACGATACAGATTGTAATACCAGAGTTGCATGAGATGTTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746164" ref_strand="+" ref_description="SGN-E746164 [GI|47104890]">
      <seq>gaagtctccgagtctttgaaattgtcaatttcaactataagctataaaagtaattccaaacgtgcgctcactcaaccagtgctcgccggccggcaacgaacttccatacttgctgaaagaagtaattccagaaagttccattgatttattaagctttatcattttgattctgaatgctctttctttatgtgatgattagaggtgatttttaaaaaaatatagattgagaaatggggaacaagagagtgatgttaccggcgagtgaagttgacttgacggcggtgaagtacataccagagaatattcaaggtttcggttttatcttgaatgtgatataccatttgattgaatttttgttgttacgattgaactatgtttgcaatttgttctttcggcagctccacatttgactggtttctggttgaagttgtttgtgaagttcgttgaagcaccgggtgttggatctttgatcatgaatcaccttaagaatgaaaacaaaattgaagagaagctgaagtacaccgtcataccggagggtcctatgtttaaacctgaatttcctcctcaagagccagaacctgctgttgtaagcctggaagaagacgtgaggcctgaagaccgggttgggctagccttgaagtatcttccagaatatgatccggctagcaattggagtggtgattcaagtgcaccattccgctattggaaaattcgtgattatgcatatgcatacagatctaagtttacaactccatctatggaaaggcacttctatggttgcttggtttttgtttctctcttctagtctctaggatgagaagttattccttgtattacaggttgcagagcgcttcatctcagccattgaggagttcaatagtaaacatcctgcagcaccactattaatttcttttgaccctgatgaattaagaaagcaagctgctgcttctacacaaagatttgaacaaggaaacccattgtcaatattggatgggaccttcatggcaattaaagatgacatagattgctatccccatccttcaaagggagcaactacatggatgcatgaggttcgtgaggtaacgaaggatgctgtttctgtttcaagattacgaagttgtggcacaattttggttggaaaggcgaacatgcatgagttgggcttgggcaccactggaaacaatgcaaactatgggactacacgaaatccacatgatccagagaggtatacaggagggtcttcctcaggccctgcagctattgtggcttcgggactgtgttctgcagctttagggacagatggaggaggttcagttcggattccttcttccctttgtggtgttgtaggtttgaagtcaacatatggtcgaactgacatgacagggtcattatgtgatgatggaacggtagaaataattggaccaatagccacaacagttgaggacaccatacttgttccctcccttgtgtacctaatttcccctcacgagagagctcgcgatctctggaatcactgcgccttggaaaatatacagagactgtagagattgtaataccagagttgcatgagatgcgcattgctcatattgtttctattgggtctgaatcattgtgctcactgaatccagactgtggtgacgggagaggagcaagattgacatatgatactcgtacaaatctggcattttttcgttcatttactgcagcagattatgttgctgctcagcggcttaggcggaggttaatgtatttccatatggagattttcaagaaggtggatatcattgtgacacctacaactggcatgacagcacccagaattccaccaagtgctcttaaagttggggagactgatttgcaagtttcaggtttttcccttagtcacctcttaccagatatcatcaactatggagttagttggaactatacaaaggctgtttctctactatttgtattcatgtattctatatttcaggaaatcttatgcggtttattataaccgcaaatcttctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="57547" stop="65186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57847" g_stop="58354" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58355" i_stop="58457" i_length="103">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58458" g_stop="58518" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="569" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58519" i_stop="59085" i_length="567">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59086" g_stop="59485" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="969" r_length="400" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59486" i_stop="59615" i_length="130">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59616" g_stop="59693" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="970" r_stop="1047" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59694" i_stop="59762" i_length="69">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59763" g_stop="59910" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1048" r_stop="1195" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59911" i_stop="60156" i_length="246">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60157" g_stop="60269" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1196" r_stop="1308" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="60270" i_stop="60363" i_length="94">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="60364" g_stop="60439" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1309" r_stop="1384" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="60440" i_stop="61509" i_length="1070">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="61510" g_stop="61581" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1385" r_stop="1456" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="61582" i_stop="62690" i_length="1109">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.559" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="62691" g_stop="62771" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1457" r_stop="1537" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="62772" i_stop="63108" i_length="337">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="63109" g_stop="63212" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1538" r_stop="1641" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="63213" i_stop="63349" i_length="137">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="63350" g_stop="63442" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1642" r_stop="1734" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="63443" i_stop="64018" i_length="576">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="64019" g_stop="64087" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1735" r_stop="1803" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="64088" i_stop="64677" i_length="590">
            <donor d_prob="0.471" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="64678" g_stop="64886" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1804" r_stop="2012" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2013" polyA_stop="2027"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E746164" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2012</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57847" e_stop="58354"/>
          <exon e_start="58458" e_stop="58518"/>
          <exon e_start="59086" e_stop="59485"/>
          <exon e_start="59616" e_stop="59693"/>
          <exon e_start="59763" e_stop="59910"/>
          <exon e_start="60157" e_stop="60269"/>
          <exon e_start="60364" e_stop="60439"/>
          <exon e_start="61510" e_stop="61581"/>
          <exon e_start="62691" e_stop="62771"/>
          <exon e_start="63109" e_stop="63212"/>
          <exon e_start="63350" e_stop="63442"/>
          <exon e_start="64019" e_stop="64087"/>
          <exon e_start="64678" e_stop="64886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCTCCGAGTCTTTGAAATTGTCAATTTCAACTATAAGCTATAAAAGTAATTCCAAACGTGCGCTCACTCAACCAGTGCTCGCCGGCCGGCAACGAACTTCCATACTTGCTGAAAGAAGTAATTCCAGAAAGTTCCATTGATTTATTAAGCTTTATAATTTTGATTCTGAATGCTCTTTCTTTATGTGATGATTAGAGGTGATTTTTAAAAAAATATAGATTGAGAAATGGGGAACAAGAGAGTGATGTTACCGGCGAGTGAAGTTGACTTGACGGCGGTGAAGTACATACCAGAGAATATTCAAGGTTTCGGTTTTATCTTGAATGTGATATACCATTTGATTGAATTTTTGTTGTTACGATTGAACTATGTTTGCAATTTGTTCTTTCGGCAGCTCCACATTTGACTGGTTTCTGGTTGAAGTTGTTTGTGAAGTTCGTTGAAGCACCGGGTGTTGGATCTTTGATCATGAATCACCTTAAGAATGAAAACAAAATTGAAGAGGTTTGATTAAGTAATTTTGTATTTATATGCAATTTACTTCCTGTTGTGAATATGCATGAAATAGTTAACTAAAGACTGAAGAAGATATATTCATGATTGACAGAAGCTGAAGTACACCGTCATACCGGAGGGTCCTATGTTTAAACCTGAATTTCCTCCTCAAGGTTCATTCTTAAGCTAAGATATCAACTCGCTCTAAATTTGGGTATTTCCGTTAGAAATGAAATAGAAAGGTGCTTTATTGTGTTATATCCTCCCTTGACTTTGTTGGAATTACCTCCATTTTCACTTGAATGAACACTTTGCAAGTAAAGAATCAAAGGGAATAGACATGTTTAAACACCCAATGTGATTTAATTTTTATTTATTTTTAGTTATATTGTTGTACAATGTTCTCTTTATTGGAATACTCAAAGGGATAACGGAAGATCTGGAAATTCAATCTTGGCAACCAAGTTCTGTATTCCGACAAAGGCGGCATAGTGAGATCTTCCCTATTCATATTGGTGATGATAAAATTGTTTAAATTGATGCATCACATGGATGCAAAAGATGTATATGTGTATGTATGACCGTGTGCATCCACACACACAGAGATAAACATGTGGAACCTGGCATCACATGTCGATTGTGGCCTTCTTATTAAAAGCCTAGATGACAATGTTTACCTTGCCATGTTACAAAATTCTATACTTGGCACTAATTCAGTTACAATTTTCTGACTGTTGTAGAGCCAGAACCTGCTGTTGTAAGCCTGGAAGAAGACGTGAGGCCTGAAGACCGGGTTGGGCTAGCCTTGAAGTATCTTCCAGAATATGATCCGGCTAGCAATTGGAGTGGTGATTCAAGTGCACCATTCCGCTATTGGAAAATTCGTGATTATGCATATGCATACAGATCTAAGTTTACAACTCCATCTATGGAAAGGCACTTCTATGGTTGCTTGGTTTTTGTTTCTCTCTTCTAGTCTCTAGGATGAGAAGTTATTCCTTGTATTACAGGTTGCAGAGCGCTTCATCTCAGCCATTGAGGAGTTCAATAGTAAAAATCCTGCAGCACCACTATTAATTTCTTTTGACCCTGATGAATTAAGAAAGCAAGCTGCTGCTTCTACACAAAGATTTGAACAAGGTATTCTGATATTTACATCTTTCCCATGCTGTATACATGGGTGAACTGTAACGAAATAATACTCCAAAATTTATCAACATGAAAACTGTTCTCAGTCAGAATAATATTTTTCTGAGTGGGGATTATGCAGGAAACCCATTGTCAATATTGGATGGGACCTTCATGGCAATTAAAGATGACATAGATTGCTATCCCCATCCTTCAAAGGGTATATATTTTATTTTCATCTTCCACTGAGCCCTATTTCCAGATTTAATTATATACTTGGTGCAAACAGGAGCAACTACATGGATGCATGAGGTTCGTGAGGTAACGAAGGATGCTGTTTCTGTTTCAAGATTACGAAGTTGTGGCACAATTTTGGTTGGAAAGGCGAACATGCATGAGTTGGGCTTGGGCACCACTGGAAACAATGCAAACTATGGGTATATATTTTACATATTCTTTTGTAGAAAGGCTTTGTGCACATGAAGGCAGTCCTCAAACAGTTCCTTTCTGTTTCAGATGTAACGCTAGCATTTACAGACTTCCTTCACAGTGACCTATAATAATTGCTTCCTAAAATGTTTACATCCTGAGGTGGAAAACTCTAGAGTTGTTTATTAGTTGTTTTGAACATACTTTAGCGTCTCTTCCCTATAACTTCCAAGTTAAAAATCTCTCTGTGACAGGACTACACGAAATCCACATGATCCAGAGAGGTATACAGGAGGGTCTTCCTCAGGCCCTGCAGCTATTGTGGCTTCGGGACTGTGTTCTGCAGCTTTAGGGACAGATGGAGGAGGTTGTACACCTACACATGTCAAACTGAAGAATTCGCTTATTCAATCTTCATAAAACAGTATTTTATTGATGCTTGATTTAATGTGTAAGGACAGGTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTAGGTTTGAAGTCAACATATGGTCGAACTGACATGACAGGGTGAGCTCATCCTTCATTTGTACATGTGCCTTATGATATGTCTTTCTCCCTAACAGATCTTCCAACTGTATAGCCATCATTCTTGTTCCTCTTTTGTCAACCATTAATTTTTTTTTCTTGCATTTATCCTGCATCTTCATTTAGGAGGTTGTGGTTCATATATGCATGTGTATACATTAGTCTAGGACATCAACCTTTTATCTATAGTGATGATAGACCATCTCAAATTGGATTTGGTTATCTCAACAGATCTTTTTATGATTCAAGACAATGTTCACACTTTTTCACAATAACATCATTTTAGTAGCCGAAAGATGATATTATGATCATAAGTTATGCTATTTCCCGTCTACCACATTAGTATCACTTCAAATCTTTATAACTCCAGTGAGGATACTTAATGTGAAGTTTTATTTTGATGTAGCATCTCATAGGTTGCTTGCCTGTGTAAATGATTGGATGAACTTGAGTTATCGAGATAAAGAAATGAAGAAACTGTAGCTATCCAGAATGAAAAATGAAACTTTAGTTATCAGGGTAAAGATAAAAGAATTGAATTAGAAACTTATTTAGTTATAATTGTACAAAGATAATATGGATGTATATACCTTTATCAATAATATTGAAGATCAATGCTTAGGATGTAGCTTGAAATTACTGTTGGTTGGCTGCAAGAATTCCAAACTCAGTGAATTTCCATAGGCTGTGACTGATTTTGATGCTTATAGGGCTTAGTACACAATTTGAATATGGAAATATGTGTCCAAGCTTATCAGAAAAGTAATGACAGACAAATGATCTTCAATGATAAGACGAATCCATATAGATTTTCTTAAGTTGGAGAGATGAGTGATTCTGGTCAAGTGACTAGTGATTTCCACTTATGCATCGCCTTTGGTCAATTTAATTGCATCAAACCTATTATCTCTTGTACCTTCTTATTATTAAGTCAGTTGTGCATAGACATTCAATGTTCATGGTGTTCCAAATGGTTCTTTTTTCATGTTAAGGAAGAAAGTTCTCTTGCAGGATGGGGCAGATTCACTATAGCCTCTCTTTTATTTATCCAGGTCATTATGTGATGATGGAACGGTAGAAATAATTGGACCAATAGCCACAACAGTTGAGGACACCATACTTGTGTAAGTTATCATGGGCTTGAATATTGAGAATATGCTTACTCTTAAACATTATTAAACGAATGTTAGAATGACCTGGCCTCATTTTCCTATCATAAATCTGCTTGCTGATGGTAAAGAACAAACAAAAAGAATCTTATTATTGAGGAAAAGGAATGAGAATAATAGAGGTATGCAAAAAGATGTGGAATGATTATTCAACCATCTTGTCAGACCATATAAAAGAACTATAAGTGCATTCTGGAAATTTAGAATTGCATACCTCATTTAGATTTATCAATCAGACGCAAACAGTTAAATCTTGTCCAAGGACCAGTAATCCCATCAAGTGCCCGACTGTCAATTTCTAATTAGCAGTACTGTACAAAGAACCACTAGGATGCACAATGTGTTGTATGCGTAAATTCTAATAGCTGCTAAACCAGTGAAAGTACTTCTTGATTATTAGCATGAGATTGACAAGACAATCGGACAATCAGATTGCATAGCCAGCAAACTCAGTCAGTTTTACCTGGTATATAGTAGGAGGATTTAGATATTCTAATGATCTGGAGAAAATGCTAGTACAGAGTTATCCTTCCTCCTAAATGGTTGATTTTATGTGTATTTTTGTCAAGTATGCCTGGTAACTATGTCATGATATGTCTTCCCGTACCAGTTAATGTACTTTACCTGTTCCACCAACAAGTTCTTGCTTTAATAGCTTTATTCGTCTCACTTTTGTTTTAAATAAATTTACGATCGAAGTTGCACTAGGGAATTGCAGTGTGATTTGTTGATATCTTACTGCATTAGGTATGCAGCAATTTTGGGGCCCTCTCCTGCTGATAGAATCTCTTTGAGACCGGTAAGGTTGGAAACCACCAAAGAATGCGTATTCTTCTGATCTATTCATCCTTTTTATTCATTGTGTTACTTTTTAGAACTACCTTTCTAGTGAACAGGATAACCTGAAACATCATGTACATGTTTAGTACATCTAAAAACTGTGTTATTAGTTTCAATCTCTCCAGCAGACTCTAAGCATATCACATTCATCTTATTAATTTTGGACATAATTGTGGATCAGAAGTTCTGTCTGTAATTTAATCATCTGTCTCTATTTCTTTCAGTCCCTCCCTTGTGTACCTAATTTCCCCTCACGAGAGAGCTCGCGATCTCTGGAATCACTGCGCCTTGGAAAATATACAGAGGTGACTACACTGTTGTGCACTGAATTTTTTTTGTTATGACCATTATTTCTTTGATAATCTCATAGCAACTTCCTCTTGTAGTGGTTTAATGATGTCTTCTCAACTGATATATCTGACAAGTGTGAGAATGTTCTCAGTCAACTATCAGAAAAGCATGGATGCAAAGTATGCCTATTTCTATTATTACATTCTCCATTGCTTTATCTTGGACTTTGGCTGGTGAATCTCCTAGCTTTGGTTTAGAATTATTGGAACAATTAGCATCAATATTATGAGTATCTATCATTCTACAAGATTGTTAGTACGTCTAATATTTTTCTTTATCTCGTGGTTGAAGACTGTAGAGATTGTAATACCAGAGTTGCATGAGATGCGCATTGCTCATATTGTTTCTATTGGGTCTGAATCATTGTGCTCACTGAATCCAGACTGTGGTGACGGGTACACAATTTCTCTTTGAATATTCTAGTACATCACATGTCTTCTTACTAGATCTCAATGTCTTATTGAGAGCAACTTCAGACTATTTCCTGATATCATCTTTGTTATCTGTTTTCTTCTTCTTTTTCTGTCACCAGGAGAGGAGCAAGATTGACATATGATACTCGTACAAATCTGGCATTTTTTCGTTCATTTACTGCAGCAGATTATGTTGCTGCTCAGCGGCTTAGGTGAGACATGTTGTTTCTTAAGCTACCTGCACTAAAGCAATCTAACCTAGTCATGAATTTCTTTCAGACTCCATCTGAGAATTGGTCTGATGTTATTGTTGTCATCTGAGAACTGATTTATTGATTTAGCAATATGGTGGCATGTGAAATGACTGAAAACGTCACATAGTTGTATCTTACCTTAGGTTTACTTTTACACTTAATTACTTGCCAAGACTTTTAAGTTGATGACTTTGGAACCTATCAACAATGTTGTTAAAAGAATTCAGATACATTCCAATCCAAGCATATGACTTGATAAGATATGGTGGAGTGTTTGATATGCTGAAAGTAATGCTTCATTCAGAAAACAGGATGGGATGTTGAAAAGGAGAAAATGTTCTAGGACTATTGTCTTCTAATTTCTGTGTTGTTCAGTAGTTATGTATATTCTTTTATGCTTGGTTTGTGCATGTACTCTGTAATGCTAACCTTTCCAATTAGTGTCGTATGCATTTCTTACAGATACAAACAGAAACGGATCTTTCAGAAGTACAAGAAACATGATTGACATAGCTCTTGTCTGGTTTCTTGCAGGCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAAGGTGGATATCATTGTGACACCTACAACTGGGTACGTCAAGGACTTACATACATTCACCAAGGCTTACTCTATTCCAGTTATTGGACATATTTTCTCATTTTTTTCATGTGCGCACATTTAGTCACTCATCTTTCTCAAACTATTCCCCTCTTCTGAATTTACAAAAAAAAAAATCAGTAGAGTTAGAAGTATTCAAATCCATAAATTCACTATGAAATAAAGCCGGAACCAATTTGAGGGCACAAAGCCAACCTTATTTTTTTTGATTGGCCTAATTCCAATATAATAGGTATTTATCAGTGCAAGTCAGCTGAACACCGTGATTGATGAGTGGGTAGGTGGCGGGCCACCCTTCTGAAAGGTTTTTCCTTCTCTTTTTGTTTCCCCCCTTCTTTTAGTTGGTGGGACTTCTGGACCTGATATAATATTCTTAGAGATGAAGTGGTCACGTGACTGACTTGTTAATGTAGATATCTAAAACATTAAATGGCTAGTCCAAATGTGTAGACGGTAGATTAGTTAGCTGATACATGTCAAAGTTAGATTTTGTGACATCCTGAGCTTGTGTGCATTGGCAGGAATATTCCTATCACCATTTCTGATACTTCCTTCTTTTTCAGCATGACAGCACCCAGAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTGATTTGCAAGTTTCAGGTTTTTCCCTTAGTCACCTCTTACCAGATATCATCAACTATGGAGTTAGTTGGAACTATACAAAGGCTGTTTCTCTACTATTTGTATTCATGTATTCTATATTTCAGGAAATCTTATGCGGTTTATTATAACCGCAAATCTTCT</genome_strand>
        <mrna_strand>GAAGTCTCCGAGTCTTTGAAATTGTCAATTTCAACTATAAGCTATAAAAGTAATTCCAAACGTGCGCTCACTCAACCAGTGCTCGCCGGCCGGCAACGAACTTCCATACTTGCTGAAAGAAGTAATTCCAGAAAGTTCCATTGATTTATTAAGCTTTATCATTTTGATTCTGAATGCTCTTTCTTTATGTGATGATTAGAGGTGATTTTTAAAAAAATATAGATTGAGAAATGGGGAACAAGAGAGTGATGTTACCGGCGAGTGAAGTTGACTTGACGGCGGTGAAGTACATACCAGAGAATATTCAAGGTTTCGGTTTTATCTTGAATGTGATATACCATTTGATTGAATTTTTGTTGTTACGATTGAACTATGTTTGCAATTTGTTCTTTCGGCAGCTCCACATTTGACTGGTTTCTGGTTGAAGTTGTTTGTGAAGTTCGTTGAAGCACCGGGTGTTGGATCTTTGATCATGAATCACCTTAAGAATGAAAACAAAATTGAAGAG.......................................................................................................AAGCTGAAGTACACCGTCATACCGGAGGGTCCTATGTTTAAACCTGAATTTCCTCCTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGAACCTGCTGTTGTAAGCCTGGAAGAAGACGTGAGGCCTGAAGACCGGGTTGGGCTAGCCTTGAAGTATCTTCCAGAATATGATCCGGCTAGCAATTGGAGTGGTGATTCAAGTGCACCATTCCGCTATTGGAAAATTCGTGATTATGCATATGCATACAGATCTAAGTTTACAACTCCATCTATGGAAAGGCACTTCTATGGTTGCTTGGTTTTTGTTTCTCTCTTCTAGTCTCTAGGATGAGAAGTTATTCCTTGTATTACAGGTTGCAGAGCGCTTCATCTCAGCCATTGAGGAGTTCAATAGTAAACATCCTGCAGCACCACTATTAATTTCTTTTGACCCTGATGAATTAAGAAAGCAAGCTGCTGCTTCTACACAAAGATTTGAACAAG..................................................................................................................................GAAACCCATTGTCAATATTGGATGGGACCTTCATGGCAATTAAAGATGACATAGATTGCTATCCCCATCCTTCAAAGG.....................................................................GAGCAACTACATGGATGCATGAGGTTCGTGAGGTAACGAAGGATGCTGTTTCTGTTTCAAGATTACGAAGTTGTGGCACAATTTTGGTTGGAAAGGCGAACATGCATGAGTTGGGCTTGGGCACCACTGGAAACAATGCAAACTATGG......................................................................................................................................................................................................................................................GACTACACGAAATCCACATGATCCAGAGAGGTATACAGGAGGGTCTTCCTCAGGCCCTGCAGCTATTGTGGCTTCGGGACTGTGTTCTGCAGCTTTAGGGACAGATGGAGGAG..............................................................................................GTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTAGGTTTGAAGTCAACATATGGTCGAACTGACATGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTATGTGATGATGGAACGGTAGAAATAATTGGACCAATAGCCACAACAGTTGAGGACACCATACTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTCCCTTGTGTACCTAATTTCCCCTCACGAGAGAGCTCGCGATCTCTGGAATCACTGCGCCTTGGAAAATATACAGAG.................................................................................................................................................................................................................................................................................................................................................ACTGTAGAGATTGTAATACCAGAGTTGCATGAGATGCGCATTGCTCATATTGTTTCTATTGGGTCTGAATCATTGTGCTCACTGAATCCAGACTGTGGTGACGG.........................................................................................................................................GAGAGGAGCAAGATTGACATATGATACTCGTACAAATCTGGCATTTTTTCGTTCATTTACTGCAGCAGATTATGTTGCTGCTCAGCGGCTTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAAGGTGGATATCATTGTGACACCTACAACTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACAGCACCCAGAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTGATTTGCAAGTTTCAGGTTTTTCCCTTAGTCACCTCTTACCAGATATCATCAACTATGGAGTTAGTTGGAACTATACAAAGGCTGTTTCTCTACTATTTGTATTCATGTATTCTATATTTCAGGAAATCTTATGCGGTTTATTATAACCGCAAATCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692904" ref_strand="+" ref_description="SGN-E692904 [LH_Ea09O22]">
      <seq>cgttgagggtcttcctcaggccctgcagctattgtggcttcgggactgtgttcagcagctttagggacagatggaggaggttcagttcggattccttcttccctttgtggtgttgtaggtttgaagtcaacatatggtcgaactgacatgacagggtcattatgtgatgatggaacggtagaaataattggaccaatagccacaacagttgaggacaccatacttgtgtatgcagcaattttggggccctctcctgctgatagaatctctttgagaccgtccctcccttgtgtacctaatttcccctcacaagagagctcgcgatctctggaatcactgcgccttggaaaatatacagagtggtttgatgatgtcttctcaactgatatatctgacaagtgtgagaatgttctcagtcaactatcagaaaagcatggatgcaaaactgtagagattgtaataccagagttgcatgagatgcgcattgctcatattgtttctattgggtctgaatcattgtgcacactgaatccagactgtggggacgggagaggagcaagattgacctatgatactcgtacaaatctggcattttttcgttcatttactgcggcagattatgttgctgctcagcggcttaggcggaggttaatgtatttccatatggagattttcaagaaggtggatatcattgcgacacctacaactggcatgacggcacccagaattccaccaagtgctcttaaagttggggagactgatttgncagtttcaggaaatcttatgcggtttattataaccgcaaatcttctgggacttcctgctgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="59895" stop="65205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60191" g_stop="60269" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60270" i_stop="60363" i_length="94">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60364" g_stop="60439" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="155" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60440" i_stop="61509" i_length="1070">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61510" g_stop="61581" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="227" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61582" i_stop="62373" i_length="792">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62374" g_stop="62425" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="279" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62426" i_stop="62690" i_length="265">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.559" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62691" g_stop="62771" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="360" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62772" i_stop="62852" i_length="81">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.498" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62853" g_stop="62936" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="444" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62937" i_stop="63108" i_length="172">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63109" g_stop="63212" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="548" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63213" i_stop="63349" i_length="137">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="63350" g_stop="63442" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="641" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="63443" i_stop="64018" i_length="576">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64019" g_stop="64087" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="710" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64088" i_stop="64677" i_length="590">
            <donor d_prob="0.471" d_score="0.98"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="64678" g_stop="64742" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="775" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="64743" i_stop="64849" i_length="107">
            <donor d_prob="0.824" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="64850" g_stop="64905" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="831" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E692904" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60191" e_stop="60269"/>
          <exon e_start="60364" e_stop="60439"/>
          <exon e_start="61510" e_stop="61581"/>
          <exon e_start="62374" e_stop="62425"/>
          <exon e_start="62691" e_stop="62771"/>
          <exon e_start="62853" e_stop="62936"/>
          <exon e_start="63109" e_stop="63212"/>
          <exon e_start="63350" e_stop="63442"/>
          <exon e_start="64019" e_stop="64087"/>
          <exon e_start="64678" e_stop="64742"/>
          <exon e_start="64850" e_stop="64905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGAGGGTCTTCCTCAGGCCCTGCAGCTATTGTGGCTTCGGGACTGTGTTCTGCAGCTTTAGGGACAGATGGAGGAGGTTGTACACCTACACATGTCAAACTGAAGAATTCGCTTATTCAATCTTCATAAAACAGTATTTTATTGATGCTTGATTTAATGTGTAAGGACAGGTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTAGGTTTGAAGTCAACATATGGTCGAACTGACATGACAGGGTGAGCTCATCCTTCATTTGTACATGTGCCTTATGATATGTCTTTCTCCCTAACAGATCTTCCAACTGTATAGCCATCATTCTTGTTCCTCTTTTGTCAACCATTAATTTTTTTTTCTTGCATTTATCCTGCATCTTCATTTAGGAGGTTGTGGTTCATATATGCATGTGTATACATTAGTCTAGGACATCAACCTTTTATCTATAGTGATGATAGACCATCTCAAATTGGATTTGGTTATCTCAACAGATCTTTTTATGATTCAAGACAATGTTCACACTTTTTCACAATAACATCATTTTAGTAGCCGAAAGATGATATTATGATCATAAGTTATGCTATTTCCCGTCTACCACATTAGTATCACTTCAAATCTTTATAACTCCAGTGAGGATACTTAATGTGAAGTTTTATTTTGATGTAGCATCTCATAGGTTGCTTGCCTGTGTAAATGATTGGATGAACTTGAGTTATCGAGATAAAGAAATGAAGAAACTGTAGCTATCCAGAATGAAAAATGAAACTTTAGTTATCAGGGTAAAGATAAAAGAATTGAATTAGAAACTTATTTAGTTATAATTGTACAAAGATAATATGGATGTATATACCTTTATCAATAATATTGAAGATCAATGCTTAGGATGTAGCTTGAAATTACTGTTGGTTGGCTGCAAGAATTCCAAACTCAGTGAATTTCCATAGGCTGTGACTGATTTTGATGCTTATAGGGCTTAGTACACAATTTGAATATGGAAATATGTGTCCAAGCTTATCAGAAAAGTAATGACAGACAAATGATCTTCAATGATAAGACGAATCCATATAGATTTTCTTAAGTTGGAGAGATGAGTGATTCTGGTCAAGTGACTAGTGATTTCCACTTATGCATCGCCTTTGGTCAATTTAATTGCATCAAACCTATTATCTCTTGTACCTTCTTATTATTAAGTCAGTTGTGCATAGACATTCAATGTTCATGGTGTTCCAAATGGTTCTTTTTTCATGTTAAGGAAGAAAGTTCTCTTGCAGGATGGGGCAGATTCACTATAGCCTCTCTTTTATTTATCCAGGTCATTATGTGATGATGGAACGGTAGAAATAATTGGACCAATAGCCACAACAGTTGAGGACACCATACTTGTGTAAGTTATCATGGGCTTGAATATTGAGAATATGCTTACTCTTAAACATTATTAAACGAATGTTAGAATGACCTGGCCTCATTTTCCTATCATAAATCTGCTTGCTGATGGTAAAGAACAAACAAAAAGAATCTTATTATTGAGGAAAAGGAATGAGAATAATAGAGGTATGCAAAAAGATGTGGAATGATTATTCAACCATCTTGTCAGACCATATAAAAGAACTATAAGTGCATTCTGGAAATTTAGAATTGCATACCTCATTTAGATTTATCAATCAGACGCAAACAGTTAAATCTTGTCCAAGGACCAGTAATCCCATCAAGTGCCCGACTGTCAATTTCTAATTAGCAGTACTGTACAAAGAACCACTAGGATGCACAATGTGTTGTATGCGTAAATTCTAATAGCTGCTAAACCAGTGAAAGTACTTCTTGATTATTAGCATGAGATTGACAAGACAATCGGACAATCAGATTGCATAGCCAGCAAACTCAGTCAGTTTTACCTGGTATATAGTAGGAGGATTTAGATATTCTAATGATCTGGAGAAAATGCTAGTACAGAGTTATCCTTCCTCCTAAATGGTTGATTTTATGTGTATTTTTGTCAAGTATGCCTGGTAACTATGTCATGATATGTCTTCCCGTACCAGTTAATGTACTTTACCTGTTCCACCAACAAGTTCTTGCTTTAATAGCTTTATTCGTCTCACTTTTGTTTTAAATAAATTTACGATCGAAGTTGCACTAGGGAATTGCAGTGTGATTTGTTGATATCTTACTGCATTAGGTATGCAGCAATTTTGGGGCCCTCTCCTGCTGATAGAATCTCTTTGAGACCGGTAAGGTTGGAAACCACCAAAGAATGCGTATTCTTCTGATCTATTCATCCTTTTTATTCATTGTGTTACTTTTTAGAACTACCTTTCTAGTGAACAGGATAACCTGAAACATCATGTACATGTTTAGTACATCTAAAAACTGTGTTATTAGTTTCAATCTCTCCAGCAGACTCTAAGCATATCACATTCATCTTATTAATTTTGGACATAATTGTGGATCAGAAGTTCTGTCTGTAATTTAATCATCTGTCTCTATTTCTTTCAGTCCCTCCCTTGTGTACCTAATTTCCCCTCACGAGAGAGCTCGCGATCTCTGGAATCACTGCGCCTTGGAAAATATACAGAGGTGACTACACTGTTGTGCACTGAATTTTTTTTGTTATGACCATTATTTCTTTGATAATCTCATAGCAACTTCCTCTTGTAGTGGTTTAATGATGTCTTCTCAACTGATATATCTGACAAGTGTGAGAATGTTCTCAGTCAACTATCAGAAAAGCATGGATGCAAAGTATGCCTATTTCTATTATTACATTCTCCATTGCTTTATCTTGGACTTTGGCTGGTGAATCTCCTAGCTTTGGTTTAGAATTATTGGAACAATTAGCATCAATATTATGAGTATCTATCATTCTACAAGATTGTTAGTACGTCTAATATTTTTCTTTATCTCGTGGTTGAAGACTGTAGAGATTGTAATACCAGAGTTGCATGAGATGCGCATTGCTCATATTGTTTCTATTGGGTCTGAATCATTGTGCTCACTGAATCCAGACTGTGGTGACGGGTACACAATTTCTCTTTGAATATTCTAGTACATCACATGTCTTCTTACTAGATCTCAATGTCTTATTGAGAGCAACTTCAGACTATTTCCTGATATCATCTTTGTTATCTGTTTTCTTCTTCTTTTTCTGTCACCAGGAGAGGAGCAAGATTGACATATGATACTCGTACAAATCTGGCATTTTTTCGTTCATTTACTGCAGCAGATTATGTTGCTGCTCAGCGGCTTAGGTGAGACATGTTGTTTCTTAAGCTACCTGCACTAAAGCAATCTAACCTAGTCATGAATTTCTTTCAGACTCCATCTGAGAATTGGTCTGATGTTATTGTTGTCATCTGAGAACTGATTTATTGATTTAGCAATATGGTGGCATGTGAAATGACTGAAAACGTCACATAGTTGTATCTTACCTTAGGTTTACTTTTACACTTAATTACTTGCCAAGACTTTTAAGTTGATGACTTTGGAACCTATCAACAATGTTGTTAAAAGAATTCAGATACATTCCAATCCAAGCATATGACTTGATAAGATATGGTGGAGTGTTTGATATGCTGAAAGTAATGCTTCATTCAGAAAACAGGATGGGATGTTGAAAAGGAGAAAATGTTCTAGGACTATTGTCTTCTAATTTCTGTGTTGTTCAGTAGTTATGTATATTCTTTTATGCTTGGTTTGTGCATGTACTCTGTAATGCTAACCTTTCCAATTAGTGTCGTATGCATTTCTTACAGATACAAACAGAAACGGATCTTTCAGAAGTACAAGAAACATGATTGACATAGCTCTTGTCTGGTTTCTTGCAGGCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAAGGTGGATATCATTGTGACACCTACAACTGGGTACGTCAAGGACTTACATACATTCACCAAGGCTTACTCTATTCCAGTTATTGGACATATTTTCTCATTTTTTTCATGTGCGCACATTTAGTCACTCATCTTTCTCAAACTATTCCCCTCTTCTGAATTTACAAAAAAAAAAATCAGTAGAGTTAGAAGTATTCAAATCCATAAATTCACTATGAAATAAAGCCGGAACCAATTTGAGGGCACAAAGCCAACCTTATTTTTTTTGATTGGCCTAATTCCAATATAATAGGTATTTATCAGTGCAAGTCAGCTGAACACCGTGATTGATGAGTGGGTAGGTGGCGGGCCACCCTTCTGAAAGGTTTTTCCTTCTCTTTTTGTTTCCCCCCTTCTTTTAGTTGGTGGGACTTCTGGACCTGATATAATATTCTTAGAGATGAAGTGGTCACGTGACTGACTTGTTAATGTAGATATCTAAAACATTAAATGGCTAGTCCAAATGTGTAGACGGTAGATTAGTTAGCTGATACATGTCAAAGTTAGATTTTGTGACATCCTGAGCTTGTGTGCATTGGCAGGAATATTCCTATCACCATTTCTGATACTTCCTTCTTTTTCAGCATGACAGCACCCAGAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTGATTTGCAAGTTTCAGGTTTTTCCCTTAGTCACCTCTTACCAGATATCATCAACTATGGAGTTAGTTGGAACTATACAAAGGCTGTTTCTCTACTATTTGTATTCATGTATTCTATATTTCAGGAAATCTTATGCGGTTTATTATAACCGCAAATCTTCTGGGACTTCCTGCTGTTACT</genome_strand>
        <mrna_strand>CGTTGAGGGTCTTCCTCAGGCCCTGCAGCTATTGTGGCTTCGGGACTGTGTTCAGCAGCTTTAGGGACAGATGGAGGAG..............................................................................................GTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTAGGTTTGAAGTCAACATATGGTCGAACTGACATGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTATGTGATGATGGAACGGTAGAAATAATTGGACCAATAGCCACAACAGTTGAGGACACCATACTTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATTTTGGGGCCCTCTCCTGCTGATAGAATCTCTTTGAGACCG.........................................................................................................................................................................................................................................................................TCCCTCCCTTGTGTACCTAATTTCCCCTCACAAGAGAGCTCGCGATCTCTGGAATCACTGCGCCTTGGAAAATATACAGAG.................................................................................TGGTTTGATGATGTCTTCTCAACTGATATATCTGACAAGTGTGAGAATGTTCTCAGTCAACTATCAGAAAAGCATGGATGCAAA............................................................................................................................................................................ACTGTAGAGATTGTAATACCAGAGTTGCATGAGATGCGCATTGCTCATATTGTTTCTATTGGGTCTGAATCATTGTGCACACTGAATCCAGACTGTGGGGACGG.........................................................................................................................................GAGAGGAGCAAGATTGACCTATGATACTCGTACAAATCTGGCATTTTTTCGTTCATTTACTGCGGCAGATTATGTTGCTGCTCAGCGGCTTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAAGGTGGATATCATTGCGACACCTACAACTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACGGCACCCAGAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTGATTTGNCAGTTTCAG...........................................................................................................GAAATCTTATGCGGTTTATTATAACCGCAAATCTTCTGGGACTTCCTGCTGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696744" ref_strand="+" ref_description="SGN-E696744 [LH_Ea09O22](-)">
      <seq>tccagactgtggggacgggagaggagcaagattgacctatgatactcgtacaaatctggcattttttcgttcatttactgcggcagattatgttgctgctcagcggcttaggcggaggttaatgtatttccatatggagattttcaagaaggtggatatcattgcgacacctacaactggcatgacggcacccagaattccaccaagtgctcttaaagttggggagactgatttgcaagtttcaggaaatcttatgcggtttattataaccgcaaatcttctgggacttcctgctgttactgtccctgttggttatgacaagcaagggcttcccataggtatgcaactcattggccgaccctggtgtgaagcttccattttgcgcttagctgctgcaattgaggaaacttgtgctgagcccaaaaagaagccactgcaatattatgacattttgaaagggaactagaaatcaagcttacttacgtacatgggagccctgggtaaatggttggttatttggcatcgatggtgtcaaccattcattttgaatctttaaacaggtcttttgatgaaaactttacatggtatagcagagatgttctatgtatttaatattcatagctttactttaaacgaatgacgttttacaactacagttatctctcctcttttgctcccctttcagaaattagatactcactctatccaagaagggaaatgattataatggatgatagcgtaaattaggaattaaggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="63039" stop="66125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63195" g_stop="63212" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63213" i_stop="63349" i_length="137">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63350" g_stop="63442" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="111" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63443" i_stop="64018" i_length="576">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64019" g_stop="64087" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="180" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64088" i_stop="64677" i_length="590">
            <donor d_prob="0.471" d_score="0.98"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64678" g_stop="64742" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="245" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64743" i_stop="64849" i_length="107">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64850" g_stop="64911" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="307" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64912" i_stop="65186" i_length="275">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65187" g_stop="65282" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="403" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65283" i_stop="65404" i_length="122">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65405" g_stop="65508" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="507" r_length="104" r_score="0.952"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65509" i_stop="65592" i_length="84">
            <donor d_prob="0.790" d_score="0.92"/>
            <acceptor a_prob="0.836" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65593" g_stop="65820" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="720" r_length="213" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="758" polyA_stop="774"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E696744" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63195" e_stop="63212"/>
          <exon e_start="63350" e_stop="63442"/>
          <exon e_start="64019" e_stop="64087"/>
          <exon e_start="64678" e_stop="64742"/>
          <exon e_start="64850" e_stop="64911"/>
          <exon e_start="65187" e_stop="65282"/>
          <exon e_start="65405" e_stop="65508"/>
          <exon e_start="65593" e_stop="65820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGACTGTGGTGACGGGTACACAATTTCTCTTTGAATATTCTAGTACATCACATGTCTTCTTACTAGATCTCAATGTCTTATTGAGAGCAACTTCAGACTATTTCCTGATATCATCTTTGTTATCTGTTTTCTTCTTCTTTTTCTGTCACCAGGAGAGGAGCAAGATTGACATATGATACTCGTACAAATCTGGCATTTTTTCGTTCATTTACTGCAGCAGATTATGTTGCTGCTCAGCGGCTTAGGTGAGACATGTTGTTTCTTAAGCTACCTGCACTAAAGCAATCTAACCTAGTCATGAATTTCTTTCAGACTCCATCTGAGAATTGGTCTGATGTTATTGTTGTCATCTGAGAACTGATTTATTGATTTAGCAATATGGTGGCATGTGAAATGACTGAAAACGTCACATAGTTGTATCTTACCTTAGGTTTACTTTTACACTTAATTACTTGCCAAGACTTTTAAGTTGATGACTTTGGAACCTATCAACAATGTTGTTAAAAGAATTCAGATACATTCCAATCCAAGCATATGACTTGATAAGATATGGTGGAGTGTTTGATATGCTGAAAGTAATGCTTCATTCAGAAAACAGGATGGGATGTTGAAAAGGAGAAAATGTTCTAGGACTATTGTCTTCTAATTTCTGTGTTGTTCAGTAGTTATGTATATTCTTTTATGCTTGGTTTGTGCATGTACTCTGTAATGCTAACCTTTCCAATTAGTGTCGTATGCATTTCTTACAGATACAAACAGAAACGGATCTTTCAGAAGTACAAGAAACATGATTGACATAGCTCTTGTCTGGTTTCTTGCAGGCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAAGGTGGATATCATTGTGACACCTACAACTGGGTACGTCAAGGACTTACATACATTCACCAAGGCTTACTCTATTCCAGTTATTGGACATATTTTCTCATTTTTTTCATGTGCGCACATTTAGTCACTCATCTTTCTCAAACTATTCCCCTCTTCTGAATTTACAAAAAAAAAAATCAGTAGAGTTAGAAGTATTCAAATCCATAAATTCACTATGAAATAAAGCCGGAACCAATTTGAGGGCACAAAGCCAACCTTATTTTTTTTGATTGGCCTAATTCCAATATAATAGGTATTTATCAGTGCAAGTCAGCTGAACACCGTGATTGATGAGTGGGTAGGTGGCGGGCCACCCTTCTGAAAGGTTTTTCCTTCTCTTTTTGTTTCCCCCCTTCTTTTAGTTGGTGGGACTTCTGGACCTGATATAATATTCTTAGAGATGAAGTGGTCACGTGACTGACTTGTTAATGTAGATATCTAAAACATTAAATGGCTAGTCCAAATGTGTAGACGGTAGATTAGTTAGCTGATACATGTCAAAGTTAGATTTTGTGACATCCTGAGCTTGTGTGCATTGGCAGGAATATTCCTATCACCATTTCTGATACTTCCTTCTTTTTCAGCATGACAGCACCCAGAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTGATTTGCAAGTTTCAGGTTTTTCCCTTAGTCACCTCTTACCAGATATCATCAACTATGGAGTTAGTTGGAACTATACAAAGGCTGTTTCTCTACTATTTGTATTCATGTATTCTATATTTCAGGAAATCTTATGCGGTTTATTATAACCGCAAATCTTCTGGGACTTCCTGCTGTTACTGTTCCTGTAAGTTGCAACAGCTTTCTTCTTTATCCAGGGTAGTTAGTTGACCGGTGATCATTAAGGAATTAACCATTTCTGTGGAAGTAAAGGCAAGATTATATATCGACTCCACTTCAAAAATAAAAAAACTTAATCCCCTGCAGAAGCGTATTTCAGCCTAGATTTCCTTTAAATGATCCATAATGTAGGATTTGTTGGTCACATTCAAAATGAGGTATATTCAGGTAGTACAACAATGGTAGTTATCGCTATCTCATGTCAGTGAGTTACATGCTCAGGTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATGCAACTCATTGGCCGACCCTGGTGTGAAGCTTCCATTTTGCGCTTAGCTGCTGCAATTGAGGTAATTGTCCATTCAGCCAAGATGAATGAAAGCAACTACTATTCATTCAAAGCTCCAAACGGATAATGACCCCTATGCAGAAATGACTTCCAATAACAAAGCATAACATTGCTCTTTTTCAGGAAACTTGTGCTGAGCCCAAGAAGAAGCCACTGCAATATTATGACATTTTGAAAGGGAACTAGAAATCAAGCTTGCTTACGTCAATGGGAGCCCTGGGTAAACGGTAAGGTTAGTCGTGAAGCTTAAAAAGACGTGGATTCATTTATCAAGATTTTGGTTATTCATAGAAACCATCTCACATTCTCAGGTTGGTTATTGGGCATCGATGGTGTCAAAACCATTCATTTTGAATCTTTAAACAGGTCTTTTAATGAAAACTTTACATGGTATAGCAGAGATGTTCTATGTATTTAATTTTCATAGCTTTACTTTAAAAGAATGACGTTTTACAACTACAGTTTACTCTTTCAATCATCTCTCCTCTTTCGCTCTCCTTTCAGAAATTAGATACTCACTCTATCCAAGAAGGGAAATG</genome_strand>
        <mrna_strand>TCCAGACTGTGGGGACGG.........................................................................................................................................GAGAGGAGCAAGATTGACCTATGATACTCGTACAAATCTGGCATTTTTTCGTTCATTTACTGCGGCAGATTATGTTGCTGCTCAGCGGCTTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAAGGTGGATATCATTGCGACACCTACAACTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACGGCACCCAGAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTGATTTGCAAGTTTCAG...........................................................................................................GAAATCTTATGCGGTTTATTATAACCGCAAATCTTCTGGGACTTCCTGCTGTTACTGTCCCT...................................................................................................................................................................................................................................................................................GTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATGCAACTCATTGGCCGACCCTGGTGTGAAGCTTCCATTTTGCGCTTAGCTGCTGCAATTGAG..........................................................................................................................GAAACTTGTGCTGAGCCCAAAAAGAAGCCACTGCAATATTATGACATTTTGAAAGGGAACTAGAAATCAAGCTTACTTACGTACATGGGAGCCCTGGGTAAATG....................................................................................GTTGGTTATTTGGCATCGATGGTGTC--AACCATTCATTTTGAATCTTTAAACAGGTCTTTTGATGAAAACTTTACATGGTATAGCAGAGATGTTCTATGTATTTAATATTCATAGCTTTACTTTAAACGAATGACGTTTTACAACTACAG-TTA-----TC--TC-TC-CT-CT-TTT-GCTCCCCTTTCAGAAATTAGATACTCACTCTATCCAAGAAGGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358442" ref_strand="+" ref_description="SGN-E358442 [cLHT-35-E8]">
      <seq>tttgaacagccaattgggttgggttactcgtaaattttaaacgtgcactcacttgagcacgttatcattaaccagtgctcgctggcccggcgacgagcttcgattcttgctgaaagcatttacttattgttattgagttactgtatcacgaaaatggggaacaagcgagtgatgctaccggcgagtgaaattgacttgacggcggtgaagtacataccggagaatattcaagctccacatttgactggtttctggttcaagatctttctgaacctggctgaagtaccgggtattggatctttgattgtgaatcgcctcaagaatgataacaaattcgacgagaagctgaagtacaccgtcataccggagtaccctatgtttaaaccggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="68806" stop="70053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69106" g_stop="69236" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69237" i_stop="69328" i_length="92">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69329" g_stop="69429" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="232" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69430" i_stop="69521" i_length="92">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69522" g_stop="69631" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="342" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69632" i_stop="69703" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69704" g_stop="69753" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="392" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E358442" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69106" e_stop="69236"/>
          <exon e_start="69329" e_stop="69429"/>
          <exon e_start="69522" e_stop="69631"/>
          <exon e_start="69704" e_stop="69753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACAGCCAATTGGGTTTGGTTACTCGTAAATTTTAAACGTGCAGTCACTTGAGCACGTTTTCATTAACCAGTGCTCGCTGGCCCGGCGACGAGCTTCGGTTCTTGCTGAAAGCATTTACTTATTGTTGTGTGTGATAAGTTCCGTAGTATTGTATATGATTTTCTTGATTTTTATGTATCTTTATTTGTGTGATCATGATTATGGTGAATTATTGATAGATTGAGTTACTGTATCAAGAAAATGGGGAACAAGCGTGTGATGCTACCGGCGAGTGAAATTGACTTGACGGCGGTGAAGTACATACCGGAGAATATTCAAGGTTTCAATTCTTTGTATCTTTATGTGAGATATATAGTACTTAGTACTATTATGTATTGTTTCGAGTAGATTGATGTAAATTTTTCTTTGAAGCTCCACATTTGACTGGTTTCTGGTTCAAGTTCTTTCTGAACCTGGCTGAAGTACCGGGTATTGGATCTTTGATTGTGAATCGCCTCAAGAATGATAACAAATTCGACGAGGTTTGTTTCTTGATATTGTATTTGTATGCAATTTACTTTTTGGACTGAGAAAGATTTATTCATGAATGACAGAAGCTGAAGTACACCGTCATACCGGAGTACCCTATGTTTAAACCGGAATT</genome_strand>
        <mrna_strand>TTTGAACAGCCAATTGGGTTGGGTTACTCGTAAATTTTAAACGTGCACTCACTTGAGCACGTTATCATTAACCAGTGCTCGCTGGCCCGGCGACGAGCTTCGATTCTTGCTGAAAGCATTTACTTATTGTT............................................................................................ATTGAGTTACTGTATCACGAAAATGGGGAACAAGCGAGTGATGCTACCGGCGAGTGAAATTGACTTGACGGCGGTGAAGTACATACCGGAGAATATTCAAG............................................................................................CTCCACATTTGACTGGTTTCTGGTTCAAGATCTTTCTGAACCTGGCTGAAGTACCGGGTATTGGATCTTTGATTGTGAATCGCCTCAAGAATGATAACAAATTCGACGAG........................................................................AAGCTGAAGTACACCGTCATACCGGAGTACCCTATGTTTAAACCGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316313" ref_strand="+" ref_description="SGN-E316313 [cTOA-25-C11]">
      <seq>ccaattgggtttggttactcgtaaattttaaacgtgcagtcacttgagcacgttttcattaaccagtgctcgctggcccggcgacgagcttcggttcttgctgaaagcatttacttattgttattgagttactgtatcaagaaaatggggaacaagcgtgtgatgctaccggcgagtgaaattgacttgacggcggtgaagtacataccggagaatattcaagctccacatttgactggtttctggttcaagttctttctgaacctggctgaagtaccgggtattggatctttgattgtgaatcgcctcaagaatgataacaaattcgacgagaagctgaagtacaccgtcataccggagtaccctatgtttaaaccggaatttcctcctcaagagccagaacctgctgttgtcagcatcgaagaagacgcgaagcctgaagaccgggttgagctagccttaaagtgtcttccagaatatgatccagctagcaattggagtggtgatacaaccacatcatttcgctattggaagattcgtgattatgcatatgcatacagatctaagtttacaactccatcgatggttgcagagcgcttcatctcagctattgaggagttcaacaataagaatcccacaaccccactattaatttcttttgaccctgacgatgttagaaagcaagctgctgcttctacacagagatttgaacnaggggatccactctcaatcttggatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="68815" stop="71549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69115" g_stop="69236" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69237" i_stop="69328" i_length="92">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69329" g_stop="69429" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="223" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69430" i_stop="69521" i_length="92">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69522" g_stop="69631" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="333" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69632" i_stop="69703" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69704" g_stop="69764" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="394" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69765" i_stop="70693" i_length="929">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70694" g_stop="70884" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="585" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70885" i_stop="70963" i_length="79">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70964" g_stop="71093" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="715" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71094" i_stop="71223" i_length="130">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71224" g_stop="71250" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="742" r_length="27" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E316313" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69115" e_stop="69236"/>
          <exon e_start="69329" e_stop="69429"/>
          <exon e_start="69522" e_stop="69631"/>
          <exon e_start="69704" e_stop="69764"/>
          <exon e_start="70694" e_stop="70884"/>
          <exon e_start="70964" e_stop="71093"/>
          <exon e_start="71224" e_stop="71250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTGGGTTTGGTTACTCGTAAATTTTAAACGTGCAGTCACTTGAGCACGTTTTCATTAACCAGTGCTCGCTGGCCCGGCGACGAGCTTCGGTTCTTGCTGAAAGCATTTACTTATTGTTGTGTGTGATAAGTTCCGTAGTATTGTATATGATTTTCTTGATTTTTATGTATCTTTATTTGTGTGATCATGATTATGGTGAATTATTGATAGATTGAGTTACTGTATCAAGAAAATGGGGAACAAGCGTGTGATGCTACCGGCGAGTGAAATTGACTTGACGGCGGTGAAGTACATACCGGAGAATATTCAAGGTTTCAATTCTTTGTATCTTTATGTGAGATATATAGTACTTAGTACTATTATGTATTGTTTCGAGTAGATTGATGTAAATTTTTCTTTGAAGCTCCACATTTGACTGGTTTCTGGTTCAAGTTCTTTCTGAACCTGGCTGAAGTACCGGGTATTGGATCTTTGATTGTGAATCGCCTCAAGAATGATAACAAATTCGACGAGGTTTGTTTCTTGATATTGTATTTGTATGCAATTTACTTTTTGGACTGAGAAAGATTTATTCATGAATGACAGAAGCTGAAGTACACCGTCATACCGGAGTACCCTATGTTTAAACCGGAATTTCCTCCTCAAGGTTTATTCTTAAACTACTATATCAAATCTCTCTCTCAAATCAATCAATTTAAATATTTCCATTAGCAATGAAATAGGAAGGTACTTCTTTGTATTTTATCCTCCCCTGACAAAAGAACAGATTTACAAGTCACAAGTTTATGGAACAAAGGGTAGATTTAAACATCCTGTGTATTCGTTTTTATTTATTTTGTACAAGGTTCTCTTTATTTGGAAAACTTAAAGGGTGGACAAAGATGTGTGTTTATTAGTGGGTTAGAGTCACACTTTGGTTGGGGAATGAGTTGGTGGTTTTATTATATTGACTAGGGCAATCTTCCCTCATGAGCTAACTTTTGGATTTAGTCAGGTTTAGGTGCCAAATCCATGGTATCCGAACTAGGTCCATTTCCGTATGTGGACTTGGGCAATCCAAGCTCGTGCGGTAGCTTTTGTGATCGAGTTAGGCCAAAGTCTCATATATTTACAATCTTGGCAACCAACTTCCGGATTCCAACAAAGGTCAATTTTGACCAGGTAAATTAGAGTTACCCGACGGCCAACACCTAGTAGAATGTAACAAGTAGTACATGGATTAGTAGATGCACACAAGTTGACCAGGTCAATTCTTTCTTCTTAGTTGTGGGATTTGTGGCTGCTCTACTTGTGCGACTGTGCTGTGGTAAGAAAATAGTGAGATCTTCCATATTCATATTGATGTTGATAAGACTTGTTAAAATTGATGGCATCAATATGGATGCAAAAGATGTATATATGTGTGTGTGACTTTGTGCGTGCACACATATAAAAATGTTGAACCAAGTATTATATGTCAATGGTGACCTCCTTAAGAAAAAAAAATTAAGAAAAGGATGCCAGTGTTGACATTGCCATGATGCAAAGTGTTGTTGCATAATTGGCACTAATTCAGTTTGAATTTTCTGACTGTAGAGCCAGAACCTGCTGTTGTCAGCATCGAAGAAGACGCGAAGCCTGAAGACCGGGTTGAGCTAGCCTTAAAGTGTCTTCCAGAATATGATCCAGCTAGCAATTGGAGTGGTGATACAACCACATCATTTCGCTATTGGAAGATTCGTGATTATGCATATGCATACAGATCTAAGTTTACAACTCCATCGATGGCAAGACACTTCTATGGTTACTTGGTTTTTGTTTGTGTCTTCTAATCTCTAGGATGAGAAGTTTTTCCTTGTGTTGCAGGTTGCAGAGCGCTTCATCTCAGCTATTGAGGAGTTCAACAATAAGAATCCCACAACCCCACTATTAATTTCTTTTGACCCTGACGATGTTAGAAAGCAAGCTGCTGCTTCTACACAGAGATTTGAACAAGGTATTCTGATATTTACATGTTTACCTTGCTGTACTCTTCGTTGAATGGTAAGTAAATAATACTCCAAAATTTATCGTACTTGCAAACTGTAGTCAGTCAAAATAATATTTTCGTACTGTGGAGAATGCAGGGAATCCACTCTCAATCTTGGATGGGA</genome_strand>
        <mrna_strand>CCAATTGGGTTTGGTTACTCGTAAATTTTAAACGTGCAGTCACTTGAGCACGTTTTCATTAACCAGTGCTCGCTGGCCCGGCGACGAGCTTCGGTTCTTGCTGAAAGCATTTACTTATTGTT............................................................................................ATTGAGTTACTGTATCAAGAAAATGGGGAACAAGCGTGTGATGCTACCGGCGAGTGAAATTGACTTGACGGCGGTGAAGTACATACCGGAGAATATTCAAG............................................................................................CTCCACATTTGACTGGTTTCTGGTTCAAGTTCTTTCTGAACCTGGCTGAAGTACCGGGTATTGGATCTTTGATTGTGAATCGCCTCAAGAATGATAACAAATTCGACGAG........................................................................AAGCTGAAGTACACCGTCATACCGGAGTACCCTATGTTTAAACCGGAATTTCCTCCTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGAACCTGCTGTTGTCAGCATCGAAGAAGACGCGAAGCCTGAAGACCGGGTTGAGCTAGCCTTAAAGTGTCTTCCAGAATATGATCCAGCTAGCAATTGGAGTGGTGATACAACCACATCATTTCGCTATTGGAAGATTCGTGATTATGCATATGCATACAGATCTAAGTTTACAACTCCATCGATG...............................................................................GTTGCAGAGCGCTTCATCTCAGCTATTGAGGAGTTCAACAATAAGAATCCCACAACCCCACTATTAATTTCTTTTGACCCTGACGATGTTAGAAAGCAAGCTGCTGCTTCTACACAGAGATTTGAACNAG..................................................................................................................................GGGATCCACTCTCAATCTTGGATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417817" ref_strand="+" ref_description="SGN-E417817 [STM-26-M11]">
      <seq>gttactaaagtaaattctaaacgtgcgttcactttcttgcgcacgtatcattaaccagtactcgccggtcggccggagacgacttcaattcttgctgaaagtattaacttgtagttattgaattattgtatcaagataatggggatcaagcgagtgatgctaccggcgagtgaagttgacttgacggcggtgaagtacataccggagaatattcaagctccacatttgactggtttctggttcaagttctttctgaacctggctgaagtaccgggtattggatctttgattatgaatcacctcaagaatgataacaaattctacgagaagctgaagtacaccgtcataccggagtgccctatgtttaaacccgaatttcctcctcaagagccagaacctgctggtgtcagcatagaagaagacgcgaagcctgaagaccgggttgaactatccttaaagtgtcttccagaatatgatccagctagcaattggagtggtgatacaactgcatcattccgctattggaagattcgcgattatgcatatgcatacagatctaagtatacaactccatcgatggttgcggagcgctgcatctgagtcattgaggagctcaacaataagaatcccacagccccactattaatttcttttgaccctgatgaagcatgaagcaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="69029" stop="71351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69154" g_stop="69236" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="116" r_length="84" r_score="0.747"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69237" i_stop="69328" i_length="92">
            <donor d_prob="0.000" d_score="0.70"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69329" g_stop="69429" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="217" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69430" i_stop="69521" i_length="92">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69522" g_stop="69631" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="327" r_length="110" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69632" i_stop="69703" i_length="72">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.817" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69704" g_stop="69764" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="388" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69765" i_stop="70693" i_length="929">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70694" g_stop="70884" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="579" r_length="191" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70885" i_stop="70963" i_length="79">
            <donor d_prob="0.693" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70964" g_stop="71065" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="680" r_length="101" r_score="0.873"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E417817" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69154" e_stop="69236"/>
          <exon e_start="69329" e_stop="69429"/>
          <exon e_start="69522" e_stop="69631"/>
          <exon e_start="69704" e_stop="69764"/>
          <exon e_start="70694" e_stop="70884"/>
          <exon e_start="70964" e_stop="71065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGAGCACGTTTTCATTAACCAGTGCTCGCTGG-C--CCGGCGACGAGCTTCGGTTCTTGCTGAAAGCATTTACTTATTGTTGTGTGTGATAAGTTCCGTAGTATTGTATATGATTTTCTTGATTTTTATGTATCTTTATTTGTGTGATCATGATTATGGTGAATTATTGATAGATTGAGTTACTGTATCAAGAAAATGGGGAACAAGCGTGTGATGCTACCGGCGAGTGAAATTGACTTGACGGCGGTGAAGTACATACCGGAGAATATTCAAGGTTTCAATTCTTTGTATCTTTATGTGAGATATATAGTACTTAGTACTATTATGTATTGTTTCGAGTAGATTGATGTAAATTTTTCTTTGAAGCTCCACATTTGACTGGTTTCTGGTTCAAGTTCTTTCTGAACCTGGCTGAAGTACCGGGTATTGGATCTTTGATTGTGAATCGCCTCAAGAATGATAACAAATTCGACGAGGTTTGTTTCTTGATATTGTATTTGTATGCAATTTACTTTTTGGACTGAGAAAGATTTATTCATGAATGACAGAAGCTGAAGTACACCGTCATACCGGAGTACCCTATGTTTAAACCGGAATTTCCTCCTCAAGGTTTATTCTTAAACTACTATATCAAATCTCTCTCTCAAATCAATCAATTTAAATATTTCCATTAGCAATGAAATAGGAAGGTACTTCTTTGTATTTTATCCTCCCCTGACAAAAGAACAGATTTACAAGTCACAAGTTTATGGAACAAAGGGTAGATTTAAACATCCTGTGTATTCGTTTTTATTTATTTTGTACAAGGTTCTCTTTATTTGGAAAACTTAAAGGGTGGACAAAGATGTGTGTTTATTAGTGGGTTAGAGTCACACTTTGGTTGGGGAATGAGTTGGTGGTTTTATTATATTGACTAGGGCAATCTTCCCTCATGAGCTAACTTTTGGATTTAGTCAGGTTTAGGTGCCAAATCCATGGTATCCGAACTAGGTCCATTTCCGTATGTGGACTTGGGCAATCCAAGCTCGTGCGGTAGCTTTTGTGATCGAGTTAGGCCAAAGTCTCATATATTTACAATCTTGGCAACCAACTTCCGGATTCCAACAAAGGTCAATTTTGACCAGGTAAATTAGAGTTACCCGACGGCCAACACCTAGTAGAATGTAACAAGTAGTACATGGATTAGTAGATGCACACAAGTTGACCAGGTCAATTCTTTCTTCTTAGTTGTGGGATTTGTGGCTGCTCTACTTGTGCGACTGTGCTGTGGTAAGAAAATAGTGAGATCTTCCATATTCATATTGATGTTGATAAGACTTGTTAAAATTGATGGCATCAATATGGATGCAAAAGATGTATATATGTGTGTGTGACTTTGTGCGTGCACACATATAAAAATGTTGAACCAAGTATTATATGTCAATGGTGACCTCCTTAAGAAAAAAAAATTAAGAAAAGGATGCCAGTGTTGACATTGCCATGATGCAAAGTGTTGTTGCATAATTGGCACTAATTCAGTTTGAATTTTCTGACTGTAGAGCCAGAACCTGCTGTTGTCAGCATCGAAGAAGACGCGAAGCCTGAAGACCGGGTTGAGCTAGCCTTAAAGTGTCTTCCAGAATATGATCCAGCTAGCAATTGGAGTGGTGATACAACCACATCATTTCGCTATTGGAAGATTCGTGATTATGCATATGCATACAGATCTAAGTTTACAACTCCATCGATGGCAAGACACTTCTATGGTTACTTGGTTTTTGTTTGTGTCTTCTAATCTCTAGGATGAGAAGTTTTTCCTTGTGTTGCAGGTTGCAGAGCGCTTCATCTCAGCTATTGAGGAGTTCAACAATAAGAATCCCACAACCCCACTATTAATTTCTTTTGACCCTGACGATGTTAGAAAGCAAGCT</genome_strand>
        <mrna_strand>TTTCTTGCGCACGT-ATCATTAACCAGTACTCGCCGGTCGGCCGGAGACGA-CTTCAATTCTTGCTGAAAGTATTAACTTGTAGTT............................................................................................ATTGAATTATTGTATCAAGATAATGGGGATCAAGCGAGTGATGCTACCGGCGAGTGAAGTTGACTTGACGGCGGTGAAGTACATACCGGAGAATATTCAAG............................................................................................CTCCACATTTGACTGGTTTCTGGTTCAAGTTCTTTCTGAACCTGGCTGAAGTACCGGGTATTGGATCTTTGATTATGAATCACCTCAAGAATGATAACAAATTCTACGAG........................................................................AAGCTGAAGTACACCGTCATACCGGAGTGCCCTATGTTTAAACCCGAATTTCCTCCTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGAACCTGCTGGTGTCAGCATAGAAGAAGACGCGAAGCCTGAAGACCGGGTTGAACTATCCTTAAAGTGTCTTCCAGAATATGATCCAGCTAGCAATTGGAGTGGTGATACAACTGCATCATTCCGCTATTGGAAGATTCGCGATTATGCATATGCATACAGATCTAAGTATACAACTCCATCGATG...............................................................................GTTGCGGAGCGCTGCATCTGAGTCATTGAGGAGCTCAACAATAAGAATCCCACAGCCCCACTATTAATTTCTTTTGACCCTGATGAAG-CATGAAGCAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317387" ref_strand="+" ref_description="SGN-E317387 [cTOA-28-K4]">
      <seq>cttgagcacgttttcattaaccagtgctcgctggcccggcgacgagcttcggttcttgctgaaagcatttacttattgttgtgtgtgataagttccgtagtattgtatatgattttcttgatttttatgtatctttatttgtgtgatcatgattatggtgaattattgatagattgagttactgtatcaagaaaatggggaacaagcgtgtgatgctaccggcgagtgaaattgacttgacggcggtgaagtacataccggagaatattcaagctccacatttgactggtttctggttcaagttctttctgaacctggctgaagtaccgggtattggatctttgattgtgaatcgcctcaagaatgataacaaattcgacgagaagctgaagtacaccgtcataccggagtaccctatgtttaaaccggaatttcctcctcaagagccagaaactgctgttgtcagcatcgaagaagacgcgaagcctgaagaccgggttgagctagccttaaagtgtcttccagaatatgatccagctagcaattggagtggtgatacaaccacatcatttcgctattggaaagatcgtgattatgcatatgcatacagatctaagtttacaactccatcgatgggtgcagagcgcttcatctcagctattgagggaggtcacataagaatccacaccccactattatttcttttgaccctgacgatgtagaaagcagctgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="68857" stop="71371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69157" g_stop="69429" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69430" i_stop="69521" i_length="92">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69522" g_stop="69631" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="383" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69632" i_stop="69703" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69704" g_stop="69764" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="444" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69765" i_stop="70693" i_length="929">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70694" g_stop="70884" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="635" r_length="191" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70885" i_stop="70963" i_length="79">
            <donor d_prob="0.693" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70964" g_stop="71071" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="737" r_length="102" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E317387" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69157" e_stop="69429"/>
          <exon e_start="69522" e_stop="69631"/>
          <exon e_start="69704" e_stop="69764"/>
          <exon e_start="70694" e_stop="70884"/>
          <exon e_start="70964" e_stop="71071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGCACGTTTTCATTAACCAGTGCTCGCTGGCCCGGCGACGAGCTTCGGTTCTTGCTGAAAGCATTTACTTATTGTTGTGTGTGATAAGTTCCGTAGTATTGTATATGATTTTCTTGATTTTTATGTATCTTTATTTGTGTGATCATGATTATGGTGAATTATTGATAGATTGAGTTACTGTATCAAGAAAATGGGGAACAAGCGTGTGATGCTACCGGCGAGTGAAATTGACTTGACGGCGGTGAAGTACATACCGGAGAATATTCAAGGTTTCAATTCTTTGTATCTTTATGTGAGATATATAGTACTTAGTACTATTATGTATTGTTTCGAGTAGATTGATGTAAATTTTTCTTTGAAGCTCCACATTTGACTGGTTTCTGGTTCAAGTTCTTTCTGAACCTGGCTGAAGTACCGGGTATTGGATCTTTGATTGTGAATCGCCTCAAGAATGATAACAAATTCGACGAGGTTTGTTTCTTGATATTGTATTTGTATGCAATTTACTTTTTGGACTGAGAAAGATTTATTCATGAATGACAGAAGCTGAAGTACACCGTCATACCGGAGTACCCTATGTTTAAACCGGAATTTCCTCCTCAAGGTTTATTCTTAAACTACTATATCAAATCTCTCTCTCAAATCAATCAATTTAAATATTTCCATTAGCAATGAAATAGGAAGGTACTTCTTTGTATTTTATCCTCCCCTGACAAAAGAACAGATTTACAAGTCACAAGTTTATGGAACAAAGGGTAGATTTAAACATCCTGTGTATTCGTTTTTATTTATTTTGTACAAGGTTCTCTTTATTTGGAAAACTTAAAGGGTGGACAAAGATGTGTGTTTATTAGTGGGTTAGAGTCACACTTTGGTTGGGGAATGAGTTGGTGGTTTTATTATATTGACTAGGGCAATCTTCCCTCATGAGCTAACTTTTGGATTTAGTCAGGTTTAGGTGCCAAATCCATGGTATCCGAACTAGGTCCATTTCCGTATGTGGACTTGGGCAATCCAAGCTCGTGCGGTAGCTTTTGTGATCGAGTTAGGCCAAAGTCTCATATATTTACAATCTTGGCAACCAACTTCCGGATTCCAACAAAGGTCAATTTTGACCAGGTAAATTAGAGTTACCCGACGGCCAACACCTAGTAGAATGTAACAAGTAGTACATGGATTAGTAGATGCACACAAGTTGACCAGGTCAATTCTTTCTTCTTAGTTGTGGGATTTGTGGCTGCTCTACTTGTGCGACTGTGCTGTGGTAAGAAAATAGTGAGATCTTCCATATTCATATTGATGTTGATAAGACTTGTTAAAATTGATGGCATCAATATGGATGCAAAAGATGTATATATGTGTGTGTGACTTTGTGCGTGCACACATATAAAAATGTTGAACCAAGTATTATATGTCAATGGTGACCTCCTTAAGAAAAAAAAATTAAGAAAAGGATGCCAGTGTTGACATTGCCATGATGCAAAGTGTTGTTGCATAATTGGCACTAATTCAGTTTGAATTTTCTGACTGTAGAGCCAGAACCTGCTGTTGTCAGCATCGAAGAAGACGCGAAGCCTGAAGACCGGGTTGAGCTAGCCTTAAAGTGTCTTCCAGAATATGATCCAGCTAGCAATTGGAGTGGTGATACAACCACATCATTTCGCTATTGGAAGATTCGTGATTATGCATATGCATACAGATCTAAGTTTACAACTCCATCGATGGCAAGACACTTCTATGGTTACTTGGTTTTTGTTTGTGTCTTCTAATCTCTAGGATGAGAAGTTTTTCCTTGTGTTGCAGGTTGCAGAGCGCTTCATCTCAGCTATTGA-GGAGTTCAACAATAAGAATCCCACAACCCCACTATTAATTTCTTTTGACCCTGACGATGTTAGAAAGCAAGCTGCTGCT</genome_strand>
        <mrna_strand>CTTGAGCACGTTTTCATTAACCAGTGCTCGCTGGCCCGGCGACGAGCTTCGGTTCTTGCTGAAAGCATTTACTTATTGTTGTGTGTGATAAGTTCCGTAGTATTGTATATGATTTTCTTGATTTTTATGTATCTTTATTTGTGTGATCATGATTATGGTGAATTATTGATAGATTGAGTTACTGTATCAAGAAAATGGGGAACAAGCGTGTGATGCTACCGGCGAGTGAAATTGACTTGACGGCGGTGAAGTACATACCGGAGAATATTCAAG............................................................................................CTCCACATTTGACTGGTTTCTGGTTCAAGTTCTTTCTGAACCTGGCTGAAGTACCGGGTATTGGATCTTTGATTGTGAATCGCCTCAAGAATGATAACAAATTCGACGAG........................................................................AAGCTGAAGTACACCGTCATACCGGAGTACCCTATGTTTAAACCGGAATTTCCTCCTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGAAACTGCTGTTGTCAGCATCGAAGAAGACGCGAAGCCTGAAGACCGGGTTGAGCTAGCCTTAAAGTGTCTTCCAGAATATGATCCAGCTAGCAATTGGAGTGGTGATACAACCACATCATTTCGCTATTGGAAAGATCGTGATTATGCATATGCATACAGATCTAAGTTTACAACTCCATCGATG...............................................................................GGTGCAGAGCGCTTCATCTCAGCTATTGAGGGAGGTC-AC-ATAAGAAT-CCAC-ACCCCACTATT-ATTTCTTTTGACCCTGACGATG-TAGAAAGC-AGCTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461971" ref_strand="+" ref_description="SGN-E461971 [cPRO-10-M11]">
      <seq>aagaaagcaagctgctgcttctacacaaagatttgaacaagggaatccactctcaatcttggatgggattttcatggcaatcaaagacgacatagattgctattctcacccttcaaagggagcaactgcatggatgcatgaggttcgtgaggtaaagaaggatgctgtttctgtgtcaagattacgaagttgtggtgcaattttggttggaaaggcaaacatgcatgagttgggcttgggcactactggaaataatgcaaactatgggactacacgaaacccacacgatccagataggtacaccggcgggtcttcctcaggccctgcagctattgtggcttcgggattgtgttctgctgctttggggacggatggaggaggttcagttcggattccttcttccctttgtggtgttgtgggattgaagtcaacatatggtcgaactgacatgaccgggtcattatgtgatgatggaacagtggcaattattggaccaattgctacaacagttgaggacaccatacttgtgtatgcagcaattttggggtcctcacctgctgatagaatctctttgagaccgtccctcccctgtgtacctaatttctcttcacaagagagcttgcaatctgtggaatcgctgcgccttggaaatatacagagtggtttaacgatgtcttctcaactgatatatctgancagtgcgggaatgttctcagtcggctatcagaaaagcatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="59145" stop="74776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71053" g_stop="71093" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71094" i_stop="71223" i_length="130">
            <donor d_prob="0.998" d_score="0.95"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71224" g_stop="71301" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="119" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71302" i_stop="71371" i_length="70">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.841" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71372" g_stop="71519" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="267" r_length="148" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71520" i_stop="71791" i_length="272">
            <donor d_prob="0.928" d_score="0.94"/>
            <acceptor a_prob="0.971" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71792" g_stop="71904" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="380" r_length="113" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71905" i_stop="71998" i_length="94">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.765" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71999" g_stop="72074" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="456" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72075" i_stop="73408" i_length="1334">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73409" g_stop="73480" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="528" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73481" i_stop="73886" i_length="406">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73887" g_stop="73938" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="580" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="73939" i_stop="74236" i_length="298">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74237" g_stop="74317" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="660" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="74318" i_stop="74396" i_length="79">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="74397" g_stop="74476" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="740" r_length="80" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E461971" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71053" e_stop="71093"/>
          <exon e_start="71224" e_stop="71301"/>
          <exon e_start="71372" e_stop="71519"/>
          <exon e_start="71792" e_stop="71904"/>
          <exon e_start="71999" e_stop="72074"/>
          <exon e_start="73409" e_stop="73480"/>
          <exon e_start="73887" e_stop="73938"/>
          <exon e_start="74237" e_stop="74317"/>
          <exon e_start="74397" e_stop="74476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAGCAAGCTGCTGCTTCTACACAGAGATTTGAACAAGGTATTCTGATATTTACATGTTTACCTTGCTGTACTCTTCGTTGAATGGTAAGTAAATAATACTCCAAAATTTATCGTACTTGCAAACTGTAGTCAGTCAAAATAATATTTTCGTACTGTGGAGAATGCAGGGAATCCACTCTCAATCTTGGATGGGATTTTCATGGCAATCAAAGACGACATAGATTGCTATTCTCACCCATCAAAGGGTACGTATTTTAGTTTTCATCTTCGGCCTAGCCCTATTCCCAGATTTAGTTATATGCTTGGTGCAAACAGGAGCAACTACATGGATGCATGAGGTTCGTGAGGTAAAGAAGGATGCTGTTTCTGTGTCAAGATTACGCAGTTGTGGAGCAATTTTGGTTGGAAAGGCGAACATGCATGAGTTGGGATTGGGTACTACTGGAAATAACGCAAACTATGGGTATGTATTTACGTATTCTTTTGTGGAAAGGCTTTGTGTACAGGAAATGCTAAATTGCATTTAACCCTTTCTAAGGCAGTCCTCAGATATTTCCTTTCTGTTTTAAATGTAACACTAGCATTCACAGGATTCCTTCACAGTAACCTTTAACAATTGCTTCCTAAAATGTTTATATCCTCAGGTGGTATGCTCTACAGTTGTTTATTAGTTGTTGCGAAAATACTTTTGCTTCTCTGCCCTTTTTCTTATCGAGTTAAAAATCTCTGTGACAGGACTACACGGAACCCACACGATCCAGATAGGTACACAGGTGGCTCTTCCTCCGGCCCTGCAGCTATTGTGGCTTTGGGATTGTGTTCTGCTGCTTTGGGGACGGATGGAGGAGGTTGTACATTTATTCCATGTCAAACTGAAGAATCCACTTATTCAATCTTCATAAACAATATTTTATTGATGCTTGATTTAATGTGTAAGGACAGGTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTGGGATTAAAGTCAACATATGGTCGAACTGACATGACCGGGTGAGCTCGTCCTACACTTGTACATGTCGCTTATGATATATTTTTCTCACTAACAGATCTTCCAACTGTATAACCATTATTCTTATTCCTCTTTCGTCAACCATCAATATTTCTTGCATTTATTCTGCCTATTCGTTTAGGAGCTTGTGGTTCATATATGCAAGTGTGTACATTAGTCTAAAATGTGCTTCAATCTTTTATGTATAGTGATGATAGACCATCTCAAATTGGATTTATTATCTCTCCAGATCAATCTTTTATGTATAGTGATGATAGACCATCTCAAATTGGATTTATTATCTCTCTAGATCTTTGTATTAGTCAAAATAATGTTCTCAATTTTTTTTATTAAGGATGTCCAAGAATAATTGTGTGTCGCTGTCAAAATAATAATAAAAAAATTGTGATATTTGGGGTTTGAAAGCAGAACTCCTTCAGTCATATAGACACCTATTACCACTGCGCCAAAGACATAACTTCTGTTAATGGTGTCCAACTTTAAATATATATCCTTTAAATGTAGAATTTGACATAGGTGTCCAATTGGAGGTGGCTGTGGCTACGCCACTGTTCATAACTTATGCTATTTTCCATCTTACCACATTAATATTGCCTCAAATCTTTATAAATCCAATAAGGATACTTTCTGAGAAGCTTTATTTTGATGTAGCATCTCATAGGTTGCTTGCCTATGCTAAGGATTGGATATAAAACTTTAGCTATCAAGATAAAGAAATGAAGTAACTCTAGTTATTTAGAATAAAATTTAGTTATCAAAGTAAATAATTGAATACGGAACTTATATAGTTGTCACTTTGCCAGGTTACATTTTATTAGTCCAAATTAATCTAAGATAATATGGATGTATATACCTTTGTCAATAATATGGAGATCAATATCAAGAGCGGAGCTTGAAATTACTGTTGGTTGATTGCAAGAACTCCGAACTCAGTGAAGTTCCATAAGTTGTGACTGATTTTGATGCTTAAGCTTAGTACACAATTGGACTATGGAATAGTGCATCCAAACTTGTGAGAAAAGATTTCTACAGCCAAACAGGCTTCAATTATTTGACAAATCCATGTTGATTTTCTTAACTTGGAGAGATAAGTGATTTTGGTGAAATGATTAGTATTTCCACTTGTGCATTGCCTTCAGTCCGTTTAATAGTATCAAAGCTGTTATCACTTGTACCTTCTTATTATTAAGTTAGTTTTGGGTGCACAGACACTCAATCTTTACGGTGTTCCGAATGATTCTTTTTTCATGTAATGGGAGAAAATTGTCTTTCAGTATGGGGCAGGTTCACTATAGCCTCTGTTTTATTTATCCAGGTCATTATGTGGTGATGGAACAGTGGCAATTATTGGACCGATTGCTACAACAGTTGAGGACACCATACTTGTGTAAGTTGTCATGGGTTTGAATATGAGAATATGCTTAATCCTAAACATTTGTAATAAAGTAAATGACGTTGAAATTAGCTGGCCTAATTTTCCTCTTATAAATCTGCTTGCTGATGGTAAAGGACAAACTAAAAGAATCTTATTATTGAGGAAAGGAAATGAGAGTGATCGTGATATGCATAATTGCTTATAGATGTGGAATGATTGTTCAACCATCTTGTCATGTATGCCACGGAACTATGTCAGGATGAGTATTCCTGGACCTGTTAATGTTATTTACATGTTCTACTCAATAAGTTATTGCGTTGATAGCTTTATTGGTCTCACTTTTGTTTTAACTAAATTTTGGATCAAAGTTACACTAGGAAATTGCAATGTGATTTGTTCATATCCATTACTTTATCAGGTATGCAGCAATTTTGGGGTCCTCTCCCGCTGATAGAATCTCTTTGAGACCGGTAACCATCCCAAAAGGCTTATTCATCAGCTATATTATTAAAAGTCTGTATTTCTATTGAATGTTCTGCTTTCTTTCTTTTTCTTCATTGTAATACTTTGTAAAAGTAGCTTCTGGTGAACAGAATAACCTGAAACATCATTTACATGTTTAGAACATCTAAAAACCATGTTCGTAGTTTTAATCTCACCAGCAGACTCTAGATTCATTAAGATCACATTCATCTTGTTGATTTTGGACATCATGGTGGATCAAACATTCTGTTTCTGTAATTTATCATCTCCCTCTATTTCTTTCAGTCCCTCCCTTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAGGTGACCATACTTCTCACTGAAATAGTTTTTGTATTTGGATATTTTTATTTGATAATATCATGTCATCATCCTTTTACAGTGGTTTAATGATGTCTTCTCAATTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCAGCTATCAGAAGAGCATGGATG</genome_strand>
        <mrna_strand>AAGAAAGCAAGCTGCTGCTTCTACACAAAGATTTGAACAAG..................................................................................................................................GGAATCCACTCTCAATCTTGGATGGGATTTTCATGGCAATCAAAGACGACATAGATTGCTATTCTCACCCTTCAAAGG......................................................................GAGCAACTGCATGGATGCATGAGGTTCGTGAGGTAAAGAAGGATGCTGTTTCTGTGTCAAGATTACGAAGTTGTGGTGCAATTTTGGTTGGAAAGGCAAACATGCATGAGTTGGGCTTGGGCACTACTGGAAATAATGCAAACTATGG................................................................................................................................................................................................................................................................................GACTACACGAAACCCACACGATCCAGATAGGTACACCGGCGGGTCTTCCTCAGGCCCTGCAGCTATTGTGGCTTCGGGATTGTGTTCTGCTGCTTTGGGGACGGATGGAGGAG..............................................................................................GTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTGGGATTGAAGTCAACATATGGTCGAACTGACATGACCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTATGTGATGATGGAACAGTGGCAATTATTGGACCAATTGCTACAACAGTTGAGGACACCATACTTGT......................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATTTTGGGGTCCTCACCTGCTGATAGAATCTCTTTGAGACCG..........................................................................................................................................................................................................................................................................................................TCCCTCCCCTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGG-AAATATACAGAG...............................................................................TGGTTTAACGATGTCTTCTCAACTGATATATCTGANCAGTGCGGGAATGTTCTCAGTCGGCTATCAGAAAAGCATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320261" ref_strand="+" ref_description="SGN-E320261 [cTOB-21-F1]">
      <seq>ggaacccacacgatccggataggtacacaggtggctcttcctccggccctgcagctattgtggctttgggattgtgttctgctgctttggggacggatggaggaggttgtacatttattccatgtcaaactgaagaatccacttattcaatcttcataaacaatattttattgatgcttgatttaatgtgtaaggacaggttcagttcggattccttcttccctttgtggtgttgtgggattaaagtcaacatatggtcgaactgacatgaccgggtgagctcgtcctacacttgtacatgtcgcttatgatatatttttctcactaacagatcttccaactgtataaccattattcttattcctctttcgtcaaccatcaatatttcttgcatttattctgcctattcgtttacgagcttgtggttcatatatgcaagtgtgtacattagtctagaatgtgcttcaatcttttatgtatagtgatgatagaccatctcagattggatttattatctctccagatcaatcttttatgtatagtgatgatagaccatctcagattggatttattatctctctagatctttgtattagtcaaaataatgttctcaattttttttattaaggatgtccaagaataattgtgtgtcgctgtcaaaataataataaaaaaattgtgatatgtggggtttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="71500" stop="72796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71800" g_stop="72496" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E320261" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71800" e_stop="72496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCCACACGATCCAGATAGGTACACAGGTGGCTCTTCCTCCGGCCCTGCAGCTATTGTGGCTTTGGGATTGTGTTCTGCTGCTTTGGGGACGGATGGAGGAGGTTGTACATTTATTCCATGTCAAACTGAAGAATCCACTTATTCAATCTTCATAAACAATATTTTATTGATGCTTGATTTAATGTGTAAGGACAGGTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTGGGATTAAAGTCAACATATGGTCGAACTGACATGACCGGGTGAGCTCGTCCTACACTTGTACATGTCGCTTATGATATATTTTTCTCACTAACAGATCTTCCAACTGTATAACCATTATTCTTATTCCTCTTTCGTCAACCATCAATATTTCTTGCATTTATTCTGCCTATTCGTTTAGGAGCTTGTGGTTCATATATGCAAGTGTGTACATTAGTCTAAAATGTGCTTCAATCTTTTATGTATAGTGATGATAGACCATCTCAAATTGGATTTATTATCTCTCCAGATCAATCTTTTATGTATAGTGATGATAGACCATCTCAAATTGGATTTATTATCTCTCTAGATCTTTGTATTAGTCAAAATAATGTTCTCAATTTTTTTTATTAAGGATGTCCAAGAATAATTGTGTGTCGCTGTCAAAATAATAATAAAAAAATTGTGATATTTGGGGTTTGAA</genome_strand>
        <mrna_strand>GGAACCCACACGATCCGGATAGGTACACAGGTGGCTCTTCCTCCGGCCCTGCAGCTATTGTGGCTTTGGGATTGTGTTCTGCTGCTTTGGGGACGGATGGAGGAGGTTGTACATTTATTCCATGTCAAACTGAAGAATCCACTTATTCAATCTTCATAAACAATATTTTATTGATGCTTGATTTAATGTGTAAGGACAGGTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTGGGATTAAAGTCAACATATGGTCGAACTGACATGACCGGGTGAGCTCGTCCTACACTTGTACATGTCGCTTATGATATATTTTTCTCACTAACAGATCTTCCAACTGTATAACCATTATTCTTATTCCTCTTTCGTCAACCATCAATATTTCTTGCATTTATTCTGCCTATTCGTTTACGAGCTTGTGGTTCATATATGCAAGTGTGTACATTAGTCTAGAATGTGCTTCAATCTTTTATGTATAGTGATGATAGACCATCTCAGATTGGATTTATTATCTCTCCAGATCAATCTTTTATGTATAGTGATGATAGACCATCTCAGATTGGATTTATTATCTCTCTAGATCTTTGTATTAGTCAAAATAATGTTCTCAATTTTTTTTATTAAGGATGTCCAAGAATAATTGTGTGTCGCTGTCAAAATAATAATAAAAAAATTGTGATATGTGGGGTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323242" ref_strand="+" ref_description="SGN-E323242 [cTOB-28-K18]">
      <seq>ggaacccacacgatccagataggtacacaggtggctcttcctccggccctgcagctattgtggctttgggattgtgttctgctgctttggggacggatggaggaggttgtacatttattccatgtcaaactgaagaatccacttattcaatcttcataaacaatattttattgatgcttgatttaatgtgtaaggacaggttcagttcggattccttcttccctttgtggtgttgtgggattaaagtcaacatatggtcgaactgacatgaccgggtgagctcgtcctacacttgtacatgtcgcttatgatatatttttctcactaacagatcttccaactgtataaccattattcttattcctctttcgtcaaccatcaatatttcttgcatttattctgcctattcgtttaggagcttgtggttcatatatgcaagtgtgtacattagtctaaaatgtgcttcaatcttttatgtatagtgatgatagaccatctcaaattggatttattatctctccagatcaatcttttatgtatagtgatgatagaccatctcaaattggatttattatctctctagatctttgtattagnncaaataatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="71500" stop="72695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71800" g_stop="72408" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E323242" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71800" e_stop="72408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCCACACGATCCAGATAGGTACACAGGTGGCTCTTCCTCCGGCCCTGCAGCTATTGTGGCTTTGGGATTGTGTTCTGCTGCTTTGGGGACGGATGGAGGAGGTTGTACATTTATTCCATGTCAAACTGAAGAATCCACTTATTCAATCTTCATAAACAATATTTTATTGATGCTTGATTTAATGTGTAAGGACAGGTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTGGGATTAAAGTCAACATATGGTCGAACTGACATGACCGGGTGAGCTCGTCCTACACTTGTACATGTCGCTTATGATATATTTTTCTCACTAACAGATCTTCCAACTGTATAACCATTATTCTTATTCCTCTTTCGTCAACCATCAATATTTCTTGCATTTATTCTGCCTATTCGTTTAGGAGCTTGTGGTTCATATATGCAAGTGTGTACATTAGTCTAAAATGTGCTTCAATCTTTTATGTATAGTGATGATAGACCATCTCAAATTGGATTTATTATCTCTCCAGATCAATCTTTTATGTATAGTGATGATAGACCATCTCAAATTGGATTTATTATCTCTCTAGATCTTTGTATTAGTCAAAATAATGTT</genome_strand>
        <mrna_strand>GGAACCCACACGATCCAGATAGGTACACAGGTGGCTCTTCCTCCGGCCCTGCAGCTATTGTGGCTTTGGGATTGTGTTCTGCTGCTTTGGGGACGGATGGAGGAGGTTGTACATTTATTCCATGTCAAACTGAAGAATCCACTTATTCAATCTTCATAAACAATATTTTATTGATGCTTGATTTAATGTGTAAGGACAGGTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTGGGATTAAAGTCAACATATGGTCGAACTGACATGACCGGGTGAGCTCGTCCTACACTTGTACATGTCGCTTATGATATATTTTTCTCACTAACAGATCTTCCAACTGTATAACCATTATTCTTATTCCTCTTTCGTCAACCATCAATATTTCTTGCATTTATTCTGCCTATTCGTTTAGGAGCTTGTGGTTCATATATGCAAGTGTGTACATTAGTCTAAAATGTGCTTCAATCTTTTATGTATAGTGATGATAGACCATCTCAAATTGGATTTATTATCTCTCCAGATCAATCTTTTATGTATAGTGATGATAGACCATCTCAAATTGGATTTATTATCTCTCTAGATCTTTGTATTAGNNCAAATAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322929" ref_strand="+" ref_description="SGN-E322929 [cTOB-30-E4]">
      <seq>ggaacccacacgatccagataggtacacaggtggctcttcctccggccctgcagctattgtggctttgggattgtgttctgctgctttggggacggatggaggaggttgtacatttattccatgtcaaactgaagaatccacttattcaatcttcataaacaatattttattgatgcttgatttaatgtgtaaggacaggttcagttcggattccttcttccctttgtggtgttgtgggattaaagtcaacatatggtcgaactgacatgaccgggtgagctcgtcctacacttgtacatgtcgcttatgatatatttttctcactaacagatcttccaactgtataaccattattcttattcctctttcgtcaaccatcaatatttcttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="71500" stop="72492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71800" g_stop="72192" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E322929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71800" e_stop="72192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCCACACGATCCAGATAGGTACACAGGTGGCTCTTCCTCCGGCCCTGCAGCTATTGTGGCTTTGGGATTGTGTTCTGCTGCTTTGGGGACGGATGGAGGAGGTTGTACATTTATTCCATGTCAAACTGAAGAATCCACTTATTCAATCTTCATAAACAATATTTTATTGATGCTTGATTTAATGTGTAAGGACAGGTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTGGGATTAAAGTCAACATATGGTCGAACTGACATGACCGGGTGAGCTCGTCCTACACTTGTACATGTCGCTTATGATATATTTTTCTCACTAACAGATCTTCCAACTGTATAACCATTATTCTTATTCCTCTTTCGTCAACCATCAATATTTCTTGCA</genome_strand>
        <mrna_strand>GGAACCCACACGATCCAGATAGGTACACAGGTGGCTCTTCCTCCGGCCCTGCAGCTATTGTGGCTTTGGGATTGTGTTCTGCTGCTTTGGGGACGGATGGAGGAGGTTGTACATTTATTCCATGTCAAACTGAAGAATCCACTTATTCAATCTTCATAAACAATATTTTATTGATGCTTGATTTAATGTGTAAGGACAGGTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTGGGATTAAAGTCAACATATGGTCGAACTGACATGACCGGGTGAGCTCGTCCTACACTTGTACATGTCGCTTATGATATATTTTTCTCACTAACAGATCTTCCAACTGTATAACCATTATTCTTATTCCTCTTTCGTCAACCATCAATATTTCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319142" ref_strand="+" ref_description="SGN-E319142 [cTOB-16-O9]">
      <seq>tgacatgaccgggtcattatgtggtgatggaacagtggcaattattggaccgattgctacaacagttgaggacaccatacttgtgtatgcagcaattttggggtcctctcccgctgatagaatctctttgagaccgtccctcccttgtgtacctaatttctcttcacaagagagcttgcaatctgtggaatcgctgcgccttggaaaatatacagagtggtttaatgatgtcttctcaattgatatatctgacaagtgcgggaatgttctcagtcagctatcagaagagcatggatgcagaatcgtagaaattgtaataccagagttgcatgagatgcgcatagctcatgttgtttctattggatcggaagcattatgcgcactgaatccagactgttgtgatgggaagggagagagattgacatatgatactcgcaccaatctgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="73101" stop="75220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73409" g_stop="73480" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="84" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73481" i_stop="73886" i_length="406">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73887" g_stop="73938" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="136" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73939" i_stop="74236" i_length="298">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74237" g_stop="74317" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="217" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74318" i_stop="74396" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74397" g_stop="74480" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="301" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74481" i_stop="74650" i_length="170">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74651" g_stop="74754" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="405" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74755" i_stop="74876" i_length="122">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74877" g_stop="74920" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="449" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E319142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73409" e_stop="73480"/>
          <exon e_start="73887" e_stop="73938"/>
          <exon e_start="74237" e_stop="74317"/>
          <exon e_start="74397" e_stop="74480"/>
          <exon e_start="74651" e_stop="74754"/>
          <exon e_start="74877" e_stop="74920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTATGTGGTGATGGAACAGTGGCAATTATTGGACCGATTGCTACAACAGTTGAGGACACCATACTTGTGTAAGTTGTCATGGGTTTGAATATGAGAATATGCTTAATCCTAAACATTTGTAATAAAGTAAATGACGTTGAAATTAGCTGGCCTAATTTTCCTCTTATAAATCTGCTTGCTGATGGTAAAGGACAAACTAAAAGAATCTTATTATTGAGGAAAGGAAATGAGAGTGATCGTGATATGCATAATTGCTTATAGATGTGGAATGATTGTTCAACCATCTTGTCATGTATGCCACGGAACTATGTCAGGATGAGTATTCCTGGACCTGTTAATGTTATTTACATGTTCTACTCAATAAGTTATTGCGTTGATAGCTTTATTGGTCTCACTTTTGTTTTAACTAAATTTTGGATCAAAGTTACACTAGGAAATTGCAATGTGATTTGTTCATATCCATTACTTTATCAGGTATGCAGCAATTTTGGGGTCCTCTCCCGCTGATAGAATCTCTTTGAGACCGGTAACCATCCCAAAAGGCTTATTCATCAGCTATATTATTAAAAGTCTGTATTTCTATTGAATGTTCTGCTTTCTTTCTTTTTCTTCATTGTAATACTTTGTAAAAGTAGCTTCTGGTGAACAGAATAACCTGAAACATCATTTACATGTTTAGAACATCTAAAAACCATGTTCGTAGTTTTAATCTCACCAGCAGACTCTAGATTCATTAAGATCACATTCATCTTGTTGATTTTGGACATCATGGTGGATCAAACATTCTGTTTCTGTAATTTATCATCTCCCTCTATTTCTTTCAGTCCCTCCCTTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAGGTGACCATACTTCTCACTGAAATAGTTTTTGTATTTGGATATTTTTATTTGATAATATCATGTCATCATCCTTTTACAGTGGTTTAATGATGTCTTCTCAATTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCAGCTATCAGAAGAGCATGGATGCAGAGTAATTCTATTACCATTACTATGTTCTTCATTGCTTTATCTTGGACTTTGGCAGGTGTATCCTCTAGCTTTGGTTTAGAATTTCAGGAAACCATTAGCTGACAATATTGTGAGAATCTACCATTCTACATGTTAGTATGTCTAATATTTTTCTTTTTCTCATGGTACAAGATCGTAGAAATTGTAATACCAGAGTTGCATGAGATGCGCATAGCTCATGTTGTTTCTATTGGATCGGAAGCATTATGCGCACTGAATCCAGACTGTTGTGATGGGTAAACACTTCTATTTTGAATATTCTATTATCAAGTGTCTTCTTACTAGATCTCAATGTCTTGTTGGGAGCAGCTTCAACTTTTTTCATGATATCATCTTGGTTCCGTTTTTTTTCCTTCAGGAAGGGAGAGAGATTGACATATGATACTCGCACCAATCTGACAC</genome_strand>
        <mrna_strand>GTCATTATGTGGTGATGGAACAGTGGCAATTATTGGACCGATTGCTACAACAGTTGAGGACACCATACTTGT......................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATTTTGGGGTCCTCTCCCGCTGATAGAATCTCTTTGAGACCG..........................................................................................................................................................................................................................................................................................................TCCCTCCCTTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAG...............................................................................TGGTTTAATGATGTCTTCTCAATTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCAGCTATCAGAAGAGCATGGATGCAGA..........................................................................................................................................................................ATCGTAGAAATTGTAATACCAGAGTTGCATGAGATGCGCATAGCTCATGTTGTTTCTATTGGATCGGAAGCATTATGCGCACTGAATCCAGACTGTTGTGATGG..........................................................................................................................GAAGGGAGAGAGATTGACATATGATACTCGCACCAATCTGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319258" ref_strand="+" ref_description="SGN-E319258 [cTOB-16-O19]">
      <seq>ctgacatgaccgggtcattatggggtgatggaacagtggcaattattggaccgattgctacaacagttgatgacaccatacttgtgtatgcagcaattttggggtcctctcccgctgatagaatctctttgagaccgtccctcccttgtgtacctaatttctcttcacaagatagcttgcaatctgtggaatcgctgcgccttggaaaatatacagagtggtttaatgatgtcttctcaattgatatatctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="73101" stop="74732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73409" g_stop="73480" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="85" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73481" i_stop="73886" i_length="406">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73887" g_stop="73938" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="137" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73939" i_stop="74236" i_length="298">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74237" g_stop="74317" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="218" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74318" i_stop="74396" i_length="79">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74397" g_stop="74432" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="254" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E319258" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73409" e_stop="73480"/>
          <exon e_start="73887" e_stop="73938"/>
          <exon e_start="74237" e_stop="74317"/>
          <exon e_start="74397" e_stop="74432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTATGTGGTGATGGAACAGTGGCAATTATTGGACCGATTGCTACAACAGTTGAGGACACCATACTTGTGTAAGTTGTCATGGGTTTGAATATGAGAATATGCTTAATCCTAAACATTTGTAATAAAGTAAATGACGTTGAAATTAGCTGGCCTAATTTTCCTCTTATAAATCTGCTTGCTGATGGTAAAGGACAAACTAAAAGAATCTTATTATTGAGGAAAGGAAATGAGAGTGATCGTGATATGCATAATTGCTTATAGATGTGGAATGATTGTTCAACCATCTTGTCATGTATGCCACGGAACTATGTCAGGATGAGTATTCCTGGACCTGTTAATGTTATTTACATGTTCTACTCAATAAGTTATTGCGTTGATAGCTTTATTGGTCTCACTTTTGTTTTAACTAAATTTTGGATCAAAGTTACACTAGGAAATTGCAATGTGATTTGTTCATATCCATTACTTTATCAGGTATGCAGCAATTTTGGGGTCCTCTCCCGCTGATAGAATCTCTTTGAGACCGGTAACCATCCCAAAAGGCTTATTCATCAGCTATATTATTAAAAGTCTGTATTTCTATTGAATGTTCTGCTTTCTTTCTTTTTCTTCATTGTAATACTTTGTAAAAGTAGCTTCTGGTGAACAGAATAACCTGAAACATCATTTACATGTTTAGAACATCTAAAAACCATGTTCGTAGTTTTAATCTCACCAGCAGACTCTAGATTCATTAAGATCACATTCATCTTGTTGATTTTGGACATCATGGTGGATCAAACATTCTGTTTCTGTAATTTATCATCTCCCTCTATTTCTTTCAGTCCCTCCCTTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAGGTGACCATACTTCTCACTGAAATAGTTTTTGTATTTGGATATTTTTATTTGATAATATCATGTCATCATCCTTTTACAGTGGTTTAATGATGTCTTCTCAATTGATATATCTGAC</genome_strand>
        <mrna_strand>GTCATTATGGGGTGATGGAACAGTGGCAATTATTGGACCGATTGCTACAACAGTTGATGACACCATACTTGT......................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATTTTGGGGTCCTCTCCCGCTGATAGAATCTCTTTGAGACCG..........................................................................................................................................................................................................................................................................................................TCCCTCCCTTGTGTACCTAATTTCTCTTCACAAGATAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAG...............................................................................TGGTTTAATGATGTCTTCTCAATTGATATATCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244227" ref_strand="+" ref_description="SGN-E244227 [cLEF-37-G13]">
      <seq>tcattatgtggtgatggaacagtggcaattattggaccgattgctacaacagttgaggacaccatacttgtgtatgcagcaattttggggtcctctcccgctgatagaatctctttgagaccgtccctcccttgtgtacctaatttctcttcacaagagagcttgcaatctgtggaatcgctgcgccttggaaaatatacagagtggtttaatgatgtcttctcaattgatatatctgacaagtgcgggaatgttctcagtcagctatcagaagagcatggatgcagaatcgtagaaattgtaataccagagttgcatgagatgcgcatagctcaggttgtttctattggatcggaagcattatgcgcactgaatccagactgttgtgatgggaagggagagagatngacatatgatactcgcaccaatctgacactttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="73110" stop="75226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73410" g_stop="73480" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73481" i_stop="73886" i_length="406">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73887" g_stop="73938" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="123" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73939" i_stop="74236" i_length="298">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74237" g_stop="74317" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="204" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74318" i_stop="74396" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74397" g_stop="74480" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="288" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74481" i_stop="74650" i_length="170">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74651" g_stop="74754" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="392" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74755" i_stop="74876" i_length="122">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74877" g_stop="74926" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="442" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E244227" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73410" e_stop="73480"/>
          <exon e_start="73887" e_stop="73938"/>
          <exon e_start="74237" e_stop="74317"/>
          <exon e_start="74397" e_stop="74480"/>
          <exon e_start="74651" e_stop="74754"/>
          <exon e_start="74877" e_stop="74926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTATGTGGTGATGGAACAGTGGCAATTATTGGACCGATTGCTACAACAGTTGAGGACACCATACTTGTGTAAGTTGTCATGGGTTTGAATATGAGAATATGCTTAATCCTAAACATTTGTAATAAAGTAAATGACGTTGAAATTAGCTGGCCTAATTTTCCTCTTATAAATCTGCTTGCTGATGGTAAAGGACAAACTAAAAGAATCTTATTATTGAGGAAAGGAAATGAGAGTGATCGTGATATGCATAATTGCTTATAGATGTGGAATGATTGTTCAACCATCTTGTCATGTATGCCACGGAACTATGTCAGGATGAGTATTCCTGGACCTGTTAATGTTATTTACATGTTCTACTCAATAAGTTATTGCGTTGATAGCTTTATTGGTCTCACTTTTGTTTTAACTAAATTTTGGATCAAAGTTACACTAGGAAATTGCAATGTGATTTGTTCATATCCATTACTTTATCAGGTATGCAGCAATTTTGGGGTCCTCTCCCGCTGATAGAATCTCTTTGAGACCGGTAACCATCCCAAAAGGCTTATTCATCAGCTATATTATTAAAAGTCTGTATTTCTATTGAATGTTCTGCTTTCTTTCTTTTTCTTCATTGTAATACTTTGTAAAAGTAGCTTCTGGTGAACAGAATAACCTGAAACATCATTTACATGTTTAGAACATCTAAAAACCATGTTCGTAGTTTTAATCTCACCAGCAGACTCTAGATTCATTAAGATCACATTCATCTTGTTGATTTTGGACATCATGGTGGATCAAACATTCTGTTTCTGTAATTTATCATCTCCCTCTATTTCTTTCAGTCCCTCCCTTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAGGTGACCATACTTCTCACTGAAATAGTTTTTGTATTTGGATATTTTTATTTGATAATATCATGTCATCATCCTTTTACAGTGGTTTAATGATGTCTTCTCAATTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCAGCTATCAGAAGAGCATGGATGCAGAGTAATTCTATTACCATTACTATGTTCTTCATTGCTTTATCTTGGACTTTGGCAGGTGTATCCTCTAGCTTTGGTTTAGAATTTCAGGAAACCATTAGCTGACAATATTGTGAGAATCTACCATTCTACATGTTAGTATGTCTAATATTTTTCTTTTTCTCATGGTACAAGATCGTAGAAATTGTAATACCAGAGTTGCATGAGATGCGCATAGCTCATGTTGTTTCTATTGGATCGGAAGCATTATGCGCACTGAATCCAGACTGTTGTGATGGGTAAACACTTCTATTTTGAATATTCTATTATCAAGTGTCTTCTTACTAGATCTCAATGTCTTGTTGGGAGCAGCTTCAACTTTTTTCATGATATCATCTTGGTTCCGTTTTTTTTCCTTCAGGAAGGGAGAGAGATTGACATATGATACTCGCACCAATCTGACACTTTTTC</genome_strand>
        <mrna_strand>TCATTATGTGGTGATGGAACAGTGGCAATTATTGGACCGATTGCTACAACAGTTGAGGACACCATACTTGT......................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATTTTGGGGTCCTCTCCCGCTGATAGAATCTCTTTGAGACCG..........................................................................................................................................................................................................................................................................................................TCCCTCCCTTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAG...............................................................................TGGTTTAATGATGTCTTCTCAATTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCAGCTATCAGAAGAGCATGGATGCAGA..........................................................................................................................................................................ATCGTAGAAATTGTAATACCAGAGTTGCATGAGATGCGCATAGCTCAGGTTGTTTCTATTGGATCGGAAGCATTATGCGCACTGAATCCAGACTGTTGTGATGG..........................................................................................................................GAAGGGAGAGAGATNGACATATGATACTCGCACCAATCTGACACTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463639" ref_strand="+" ref_description="SGN-E463639 [cPRO-15-E20]">
      <seq>attatgtgatgatggaacagtggcaattattggaccaattgctacaacagttgaggacaccatactcgtgtatgcagcaattttggggtcctctcctgctgatagaatctctttgagaccggtaaccatcccaaaaggcttattcatcagcacttttcttaaactctgtatttcttttgactgttctgctttcttccttttcttcattgtaatactttgtaaaagtaccttctggtaaacaggataaacctgaaacatcatgtacatgtttagaacatctaaaaaccatgttcttagttttaatctcaccagcagactctagattcattaagatatcacattcatcttattgattttggacatcatggtggatcaaacgttctgtttctgtaatttatcatctccctctatttctttcagtccctcccctgtgtacctaatttctcttcacaagagagcttgcaatctgtggaatcgctgcgccttggaaaatatacagagtggtttaatgatgtcttctcaactgatatatctgacaagtgcgggaatgttctcagtcggctatcagaaaagcatggatgcaaagtaattctattaccattactatgttcttcattgctttagcttggactttggcaggtgtatcctctagctttggtttagaatttcanggaacattagctgacaatattgtgagaatctgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="73112" stop="74902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73412" g_stop="73480" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73481" i_stop="73886" i_length="406">
            <donor d_prob="0.946" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73887" g_stop="74317" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="501" r_length="432" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74318" i_stop="74396" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74397" g_stop="74602" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="706" r_length="205" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E463639" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73412" e_stop="73480"/>
          <exon e_start="73887" e_stop="74317"/>
          <exon e_start="74397" e_stop="74602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGTGGTGATGGAACAGTGGCAATTATTGGACCGATTGCTACAACAGTTGAGGACACCATACTTGTGTAAGTTGTCATGGGTTTGAATATGAGAATATGCTTAATCCTAAACATTTGTAATAAAGTAAATGACGTTGAAATTAGCTGGCCTAATTTTCCTCTTATAAATCTGCTTGCTGATGGTAAAGGACAAACTAAAAGAATCTTATTATTGAGGAAAGGAAATGAGAGTGATCGTGATATGCATAATTGCTTATAGATGTGGAATGATTGTTCAACCATCTTGTCATGTATGCCACGGAACTATGTCAGGATGAGTATTCCTGGACCTGTTAATGTTATTTACATGTTCTACTCAATAAGTTATTGCGTTGATAGCTTTATTGGTCTCACTTTTGTTTTAACTAAATTTTGGATCAAAGTTACACTAGGAAATTGCAATGTGATTTGTTCATATCCATTACTTTATCAGGTATGCAGCAATTTTGGGGTCCTCTCCCGCTGATAGAATCTCTTTGAGACCGGTAACCATCCCAAAAGGCTTATTCATCAGCTATATTATTAAAAGTCTGTATTTCTATTGAATGTTCTGCTTTCTTTCTTTTTCTTCATTGTAATACTTTGTAAAAGTAGCTTCTGGTGAACAGAAT-AACCTGAAACATCATTTACATGTTTAGAACATCTAAAAACCATGTTCGTAGTTTTAATCTCACCAGCAGACTCTAGATTCATTAAG--ATCACATTCATCTTGTTGATTTTGGACATCATGGTGGATCAAACATTCTGTTTCTGTAATTTATCATCTCCCTCTATTTCTTTCAGTCCCTCCCTTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAGGTGACCATACTTCTCACTGAAATAGTTTTTGTATTTGGATATTTTTATTTGATAATATCATGTCATCATCCTTTTACAGTGGTTTAATGATGTCTTCTCAATTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCAGCTATCAGAAGAGCATGGATGCAGAGTAATTCTATTACCATTACTATGTTCTTCATTGCTTTATCTTGGACTTTGGCAGGTGTATCCTCTAGCTTTGGTTTAGAATTTCAGGAAACCATTAGCTGACAATATTGTGAGAATCTACCA</genome_strand>
        <mrna_strand>ATTATGTGATGATGGAACAGTGGCAATTATTGGACCAATTGCTACAACAGTTGAGGACACCATACTCGT......................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATTTTGGGGTCCTCTCCTGCTGATAGAATCTCTTTGAGACCGGTAACCATCCCAAAAGGCTTATTCATCAGCACTTTTCTT-AAACTCTGTATTTCTTTTGACTGTTCTGCTTTC-TTCCTTTTCTTCATTGTAATACTTTGTAAAAGTACCTTCTGGTAAACAGGATAAACCTGAAACATCATGTACATGTTTAGAACATCTAAAAACCATGTTCTTAGTTTTAATCTCACCAGCAGACTCTAGATTCATTAAGATATCACATTCATCTTATTGATTTTGGACATCATGGTGGATCAAACGTTCTGTTTCTGTAATTTATCATCTCCCTCTATTTCTTTCAGTCCCTCCCCTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAG...............................................................................TGGTTTAATGATGTCTTCTCAACTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCGGCTATCAGAAAAGCATGGATGCAAAGTAATTCTATTACCATTACTATGTTCTTCATTGCTTTAGCTTGGACTTTGGCAGGTGTATCCTCTAGCTTTGGTTTAGAATTTCANGGAA-CATTAGCTGACAATATTGTGAGAATCTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463571" ref_strand="+" ref_description="SGN-E463571 [cPRO-15-G21]">
      <seq>attatgtgatgatggaacagtggcaattattggaccaggttgctacaacaggtgaggacaccatactcgtgtatgcagcaattttggggtcctctcctgctgatataatctctttgagaccggtaaccatcccaaaaggcttattcatcaccacttttcttacactctgtatttcttttgactgttctgctttcttccttttcttcattgtaatactttgtaaaagtaccttctggtaaacaggataaacctgaaacatcatgtacatgtttagaacatctaaaaaccatgatcttagttttaatctcaccagcagactctatattcattaagatatcacattcgtcttattgattttggacatcatggtggatcaaacggtctgtttctgcaatttatcatctccctctatttctttcaatccctcccctgtgtacctaatttctcttcacaagagagcttgcaatctgtggaatcgctgcaccttggaaaatatacagagtggtttaatgatgtcttctcaactgatatatctgaacagtgcgggaatgatctcaggcggctatcagaaaagcatggatgcagagtaattctattaccattactatgctcttcattgctttagcttggactttggctagcgtatcctctagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="73112" stop="74838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73412" g_stop="73480" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73481" i_stop="73886" i_length="406">
            <donor d_prob="0.946" d_score="0.90"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73887" g_stop="74317" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="502" r_length="432" r_score="0.919"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74318" i_stop="74396" i_length="79">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74397" g_stop="74548" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="654" r_length="152" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E463571" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73412" e_stop="73480"/>
          <exon e_start="73887" e_stop="74317"/>
          <exon e_start="74397" e_stop="74548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGTGGTGATGGAACAGTGGCAATTATTGGACC-GATTGCTACAACAGTTGAGGACACCATACTTGTGTAAGTTGTCATGGGTTTGAATATGAGAATATGCTTAATCCTAAACATTTGTAATAAAGTAAATGACGTTGAAATTAGCTGGCCTAATTTTCCTCTTATAAATCTGCTTGCTGATGGTAAAGGACAAACTAAAAGAATCTTATTATTGAGGAAAGGAAATGAGAGTGATCGTGATATGCATAATTGCTTATAGATGTGGAATGATTGTTCAACCATCTTGTCATGTATGCCACGGAACTATGTCAGGATGAGTATTCCTGGACCTGTTAATGTTATTTACATGTTCTACTCAATAAGTTATTGCGTTGATAGCTTTATTGGTCTCACTTTTGTTTTAACTAAATTTTGGATCAAAGTTACACTAGGAAATTGCAATGTGATTTGTTCATATCCATTACTTTATCAGGTATGCAGCAATTTTGGGGTCCTCTCCCGCTGATAGAATCTCTTTGAGACCGGTAACCATCCCAAAAGGCTTATTCATCAGCTATATTATTAAAAGTCTGTATTTCTATTGAATGTTCTGCTTTCTTTCTTTTTCTTCATTGTAATACTTTGTAAAAGTAGCTTCTGGTGAACAGAAT-AACCTGAAACATCATTTACATGTTTAGAACATCTAAAAACCATGTTCGTAGTTTTAATCTCACCAGCAGACTCTAGATTCATTAAG--ATCACATTCATCTTGTTGATTTTGGACATCATGGTGGATCAAACATTCTGTTTCTGTAATTTATCATCTCCCTCTATTTCTTTCAGTCCCTCCCTTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAGGTGACCATACTTCTCACTGAAATAGTTTTTGTATTTGGATATTTTTATTTGATAATATCATGTCATCATCCTTTTACAGTGGTTTAATGATGTCTTCTCAATTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCAGCTATCAGAAGAGCATGGATGCAGAGTAATTCTATTACCATTACTATGTTCTTCATTGCTTTATCTTGGACTTTGGCAGGTGTATCCTCTAGC</genome_strand>
        <mrna_strand>ATTATGTGATGATGGAACAGTGGCAATTATTGGACCAGGTTGCTACAACAGGTGAGGACACCATACTCGT......................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATTTTGGGGTCCTCTCCTGCTGATATAATCTCTTTGAGACCGGTAACCATCCCAAAAGGCTTATTCATCACCACTTTTCTT-ACACTCTGTATTTCTTTTGACTGTTCTGCTTTC-TTCCTTTTCTTCATTGTAATACTTTGTAAAAGTACCTTCTGGTAAACAGGATAAACCTGAAACATCATGTACATGTTTAGAACATCTAAAAACCATGATCTTAGTTTTAATCTCACCAGCAGACTCTATATTCATTAAGATATCACATTCGTCTTATTGATTTTGGACATCATGGTGGATCAAACGGTCTGTTTCTGCAATTTATCATCTCCCTCTATTTCTTTCAATCCCTCCCCTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCACCTTGGAAAATATACAGAG...............................................................................TGGTTTAATGATGTCTTCTCAACTGATATATCTGAACAGTGCGGGAATGATCTCAGGCGGCTATCAGAAAAGCATGGATGCAGAGTAATTCTATTACCATTACTATGCTCTTCATTGCTTTAGCTTGGACTTTGGCTAGCGTATCCTCTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463561" ref_strand="+" ref_description="SGN-E463561 [cPRO-15-E19]">
      <seq>attatgtgatgatggaacagtggcaattattggaccaattgctacaacagttgaggacaccatactcgtgtatgcagcaattttggggtcctctcctgctgatagaatctctttgagaccggtaaccatcccaaaaggcttattcatcaccacttttcttaaactctgtatttcttttgactgttctgctttcttccttttcttcattgtaatactttgtaaaagtaccttctggtaaacaggataaacctgaaacatcatgtacatgtttagaacatctaaaaaccatgttcttacttttaatctcaccagcagactctagattcattaagatatcacattcatcttattgattttggacatcatggtggatcaaacgttctgtttctgtaatttatcatctccctctatttctttcagtccctcccctgtgtacctaatttctcttcacaagagagcttgcaatctgtggaatcgctgcgccttggaaatatacagagtggtttaatgatgtcttctcaactgatatatctgacaagtgcgggaatgttctcagtcggctatcataaaagcatggatgcaaaggaattctattaccattactatgttcttcattgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="73112" stop="74817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73412" g_stop="73480" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73481" i_stop="73886" i_length="406">
            <donor d_prob="0.946" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73887" g_stop="74317" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="500" r_length="431" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74318" i_stop="74396" i_length="79">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74397" g_stop="74517" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="621" r_length="121" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E463561" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73412" e_stop="73480"/>
          <exon e_start="73887" e_stop="74317"/>
          <exon e_start="74397" e_stop="74517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGTGGTGATGGAACAGTGGCAATTATTGGACCGATTGCTACAACAGTTGAGGACACCATACTTGTGTAAGTTGTCATGGGTTTGAATATGAGAATATGCTTAATCCTAAACATTTGTAATAAAGTAAATGACGTTGAAATTAGCTGGCCTAATTTTCCTCTTATAAATCTGCTTGCTGATGGTAAAGGACAAACTAAAAGAATCTTATTATTGAGGAAAGGAAATGAGAGTGATCGTGATATGCATAATTGCTTATAGATGTGGAATGATTGTTCAACCATCTTGTCATGTATGCCACGGAACTATGTCAGGATGAGTATTCCTGGACCTGTTAATGTTATTTACATGTTCTACTCAATAAGTTATTGCGTTGATAGCTTTATTGGTCTCACTTTTGTTTTAACTAAATTTTGGATCAAAGTTACACTAGGAAATTGCAATGTGATTTGTTCATATCCATTACTTTATCAGGTATGCAGCAATTTTGGGGTCCTCTCCCGCTGATAGAATCTCTTTGAGACCGGTAACCATCCCAAAAGGCTTATTCATCAGCTATATTATTAAAAGTCTGTATTTCTATTGAATGTTCTGCTTTCTTTCTTTTTCTTCATTGTAATACTTTGTAAAAGTAGCTTCTGGTGAACAGAAT-AACCTGAAACATCATTTACATGTTTAGAACATCTAAAAACCATGTTCGTAGTTTTAATCTCACCAGCAGACTCTAGATTCATTAAG--ATCACATTCATCTTGTTGATTTTGGACATCATGGTGGATCAAACATTCTGTTTCTGTAATTTATCATCTCCCTCTATTTCTTTCAGTCCCTCCCTTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAGGTGACCATACTTCTCACTGAAATAGTTTTTGTATTTGGATATTTTTATTTGATAATATCATGTCATCATCCTTTTACAGTGGTTTAATGATGTCTTCTCAATTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCAGCTATCAGAAGAGCATGGATGCAGAGTAATTCTATTACCATTACTATGTTCTTCATTGCTTT</genome_strand>
        <mrna_strand>ATTATGTGATGATGGAACAGTGGCAATTATTGGACCAATTGCTACAACAGTTGAGGACACCATACTCGT......................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAGCAATTTTGGGGTCCTCTCCTGCTGATAGAATCTCTTTGAGACCGGTAACCATCCCAAAAGGCTTATTCATCACCACTTTTCTT-AAACTCTGTATTTCTTTTGACTGTTCTGCTTTC-TTCCTTTTCTTCATTGTAATACTTTGTAAAAGTACCTTCTGGTAAACAGGATAAACCTGAAACATCATGTACATGTTTAGAACATCTAAAAACCATGTTCTTACTTTTAATCTCACCAGCAGACTCTAGATTCATTAAGATATCACATTCATCTTATTGATTTTGGACATCATGGTGGATCAAACGTTCTGTTTCTGTAATTTATCATCTCCCTCTATTTCTTTCAGTCCCTCCCCTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGG-AAATATACAGAG...............................................................................TGGTTTAATGATGTCTTCTCAACTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCGGCTATCATAAAAGCATGGATGCAAAGGAATTCTATTACCATTACTATGTTCTTCATTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617969" ref_strand="+" ref_description="SGN-E617969 [68642]">
      <seq>ttcatttcttaaactcttccctcccttgtgtacctaatttctcttcacaagagagcttgcaatctgtggaatcgctgcgccttggaaaatatacagagtggtttaatgatgtcttctcaactgatatatctgacaagtgcgggaatgttctcagtcggctatcagaaaagcatggatgcgaaacggtagaaattgtaataccagagttgcatgagatgcgcttagctcatgttgtttctattggatctgaagcattatgcgcactgaatccagactgttatgatgggaaaggagagagattgacatatgatactcgcaccaatctggcactttttcgttcatttacagcagcagactatgttgctgctcagcggcttaggcggaggttaatgtatttccatatggagattttcaagagggtggatatcattgtgacaccaacgactggcatgacagcacccataattccaccaggtgctcttaaagttggggagactaatttgcaagttacaggaaatcttatgcggttcattataacagcaaatcttctgggacttcctgcagttactgtccctgttggttatgacaagcaagggcttcccataggtatacaactcattggccgaccctggtgtgaagcttccattttgcgcttggctgctgcaattgaggaaacttgtgcttgaaccaagaagaagcactgcaatattattgacattctgaaagggaactagaaattaaaacacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="73937" stop="76947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74237" g_stop="74317" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="98" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74318" i_stop="74396" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74397" g_stop="74480" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="182" r_length="84" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74481" i_stop="74650" i_length="170">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74651" g_stop="74754" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="286" r_length="104" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74755" i_stop="74876" i_length="122">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74877" g_stop="74969" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="379" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74970" i_stop="75332" i_length="363">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75333" g_stop="75401" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="448" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75402" i_stop="75790" i_length="389">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75791" g_stop="75855" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="513" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75856" i_stop="76003" i_length="148">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76004" g_stop="76065" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="575" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="76066" i_stop="76359" i_length="294">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="76360" g_stop="76455" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="671" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="76456" i_stop="76577" i_length="122">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="76578" g_stop="76647" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="741" r_length="70" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E617969" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74237" e_stop="74317"/>
          <exon e_start="74397" e_stop="74480"/>
          <exon e_start="74651" e_stop="74754"/>
          <exon e_start="74877" e_stop="74969"/>
          <exon e_start="75333" e_stop="75401"/>
          <exon e_start="75791" e_stop="75855"/>
          <exon e_start="76004" e_stop="76065"/>
          <exon e_start="76360" e_stop="76455"/>
          <exon e_start="76578" e_stop="76647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCCCTTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAGGTGACCATACTTCTCACTGAAATAGTTTTTGTATTTGGATATTTTTATTTGATAATATCATGTCATCATCCTTTTACAGTGGTTTAATGATGTCTTCTCAATTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCAGCTATCAGAAGAGCATGGATGCAGAGTAATTCTATTACCATTACTATGTTCTTCATTGCTTTATCTTGGACTTTGGCAGGTGTATCCTCTAGCTTTGGTTTAGAATTTCAGGAAACCATTAGCTGACAATATTGTGAGAATCTACCATTCTACATGTTAGTATGTCTAATATTTTTCTTTTTCTCATGGTACAAGATCGTAGAAATTGTAATACCAGAGTTGCATGAGATGCGCATAGCTCATGTTGTTTCTATTGGATCGGAAGCATTATGCGCACTGAATCCAGACTGTTGTGATGGGTAAACACTTCTATTTTGAATATTCTATTATCAAGTGTCTTCTTACTAGATCTCAATGTCTTGTTGGGAGCAGCTTCAACTTTTTTCATGATATCATCTTGGTTCCGTTTTTTTTCCTTCAGGAAGGGAGAGAGATTGACATATGATACTCGCACCAATCTGACACTTTTTCGTTCATTTACAGCAGCAGACTATGTTGCTTCTCAGCGGCTTAGGTGAGACATATTGTTTCTTAAGCTACCTAAAGTACAAGAATCTAATCTTAGTCACGAATTTGCTTCAGAATCCAACTGAGAACCGTTTTATCGATTTAGAAATACGGTGGCATCTGAAATGACTGAAAGCGTTAGATAATTGTAGCTCACCATGGGTTGGATTTTTCACTTTATTAGTTGCCAAAACTTTTAAGTTGATAATTTTGGAAACCAGATACAATGCTGTTGAAAGAAGTCAGTTACGTTCCAAACCAAGTATATGACTTGATAAGATGTGGTGGAGTGTTTAACATCCTGAAAGACTGAAAGTAATGCTTTATACAAGAAACATGATTGACATAACTCTTGTCTGGGTTGTTGCAGGCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATCATTGTGACACCAACAACTGGGTACGTCAAGGAAGTCTCTGGAAAGTGTGGAATTAACTTTCATATCCTTCACCAAGGCTTTCTTGTATTAATCACTCATCTTTTTCAAACTATTTCCCTGTTTTTTTTCCCGTTCTTTTTTGTTTCTCCCTTTCTTTTGCTTGGTCAGACTTCTGTGCCTGATATGATATTCTCAGAAATGGAAGTGGTCATGTGACTGACTTGTTAATCTAGATATCTAAAACATTTAATGGCAAGTCCAGTATGTGTAGACGGTAGATTAGGGTGTTGATACATGTCAAAGTTAGCTATATGACATACTGAGCTTGTGTGTCAGGAAGTCAATTGTTTTGTTGGAATAAATGCAGCAATGTTCCTAAACTTATTTCTTCTACTTCTGTCTTTTTCAGCATGACAGCACCCATAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTAATATGCAAGTTACAGGTTTTTCCCTTCACTCACCCCTTACCACATATCATCAACTATGGAGTTAGTTGAAATTATACCGATACTGTTTCTCTACTATTCTCGGACAGCTTACTGTTTTGAAGTTTCAGGTTAGATTTCTATTCATGTGATGATCTACTTTCAGGAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCTGTAAGTTGTCTCACGGATCTGCATTTTGGTTTATCTGTCTTAAGGGGATGGGTTTTCATACAATTAAATTGTCTACCGAAAAGTCCTTGCCCTAATGTTTCGATAGTTTTCATAAAAATGTAGCAGCAGATATATTCCAAAAAGCTTTATCCCCTCAGAAGCATATTTTAGCCTACATCTTCCTTCAGATGATCCATAATGTAGGATTTGTTCATCACATTCAGAATGAGGTATACTCACCTTGTATAACAATGGTAGTTATCGTTATCTCATGTCGCTGAGTTACATGCTCAGGTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGGCCCTGGTGTGAAGCTTCCATTTTGCGCTTGGCGGCTGCAATTGAGGTAATTGACCATTCAACCAAGATAAATGAGAGCAACTATGATTGATTCATAGTGTAAAATACATAATGATCCCTATGTAGAAATGACTTCCAATACCAGTACATATCGTTGCTCATTTTCAGGAAACTTGTGCTGAGCCCAAGAAGAAACCACTGCAATATTA-TGACATTCTGAAAGGGAACTAGAAATCAA</genome_strand>
        <mrna_strand>TCCCTCCCTTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAG...............................................................................TGGTTTAATGATGTCTTCTCAACTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCGGCTATCAGAAAAGCATGGATGCGAA..........................................................................................................................................................................ACGGTAGAAATTGTAATACCAGAGTTGCATGAGATGCGCTTAGCTCATGTTGTTTCTATTGGATCTGAAGCATTATGCGCACTGAATCCAGACTGTTATGATGG..........................................................................................................................GAAAGGAGAGAGATTGACATATGATACTCGCACCAATCTGGCACTTTTTCGTTCATTTACAGCAGCAGACTATGTTGCTGCTCAGCGGCTTAG...........................................................................................................................................................................................................................................................................................................................................................................GCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATCATTGTGACACCAACGACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................CATGACAGCACCCATAATTCCACCAGGTGCTCTTAAAGTTGGGGAGACTAATTTGCAAGTTACAG....................................................................................................................................................GAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCT......................................................................................................................................................................................................................................................................................................GTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGACCCTGGTGTGAAGCTTCCATTTTGCGCTTGGCTGCTGCAATTGAG..........................................................................................................................GAAACTTGTGCTTGAACCAAGAAG-AAGCACTGCAATATTATTGACATTCTGAAAGGGAACTAGAAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358391" ref_strand="+" ref_description="SGN-E358391 [cLHT-35-G16]">
      <seq>tcaactgatatatctgacaagtgcgggaatgttctcagtcagctatcagaagagcatggatgcagaatagtagaaattgtaataccagagttgcatgagatgcgcatagctcatattgtttctattggatcggaagcattatgcgcactgaatccagactgttgtgatgggaaaggagagagattgacatatgatactcgcaccaatctgacactttttcgttcatttacagcagcagactatgttgctgctcagcggcttaggcggaggttaatgtatttccatatggagattttcaagagggtggatatcattgtgacaccaacaactggcatgacagcacccataattccaccaagtgctcttaaagttggggagactaatatgcaagttacaggaaatcttatgcgggtcattataacagcaaatcttctgggacttcctgcagttactgtccctgttggttatgacaagcaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="74115" stop="76382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74415" g_stop="74480" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74481" i_stop="74650" i_length="170">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74651" g_stop="74754" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="170" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74755" i_stop="74876" i_length="122">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74877" g_stop="74969" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="263" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74970" i_stop="75332" i_length="363">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75333" g_stop="75401" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="332" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75402" i_stop="75790" i_length="389">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75791" g_stop="75855" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="397" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75856" i_stop="76003" i_length="148">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76004" g_stop="76065" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="459" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76066" i_stop="76359" i_length="294">
            <donor d_prob="0.921" d_score="0.98"/>
            <acceptor a_prob="0.723" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76360" g_stop="76380" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="480" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E358391" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74415" e_stop="74480"/>
          <exon e_start="74651" e_stop="74754"/>
          <exon e_start="74877" e_stop="74969"/>
          <exon e_start="75333" e_stop="75401"/>
          <exon e_start="75791" e_stop="75855"/>
          <exon e_start="76004" e_stop="76065"/>
          <exon e_start="76360" e_stop="76380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCAGCTATCAGAAGAGCATGGATGCAGAGTAATTCTATTACCATTACTATGTTCTTCATTGCTTTATCTTGGACTTTGGCAGGTGTATCCTCTAGCTTTGGTTTAGAATTTCAGGAAACCATTAGCTGACAATATTGTGAGAATCTACCATTCTACATGTTAGTATGTCTAATATTTTTCTTTTTCTCATGGTACAAGATCGTAGAAATTGTAATACCAGAGTTGCATGAGATGCGCATAGCTCATGTTGTTTCTATTGGATCGGAAGCATTATGCGCACTGAATCCAGACTGTTGTGATGGGTAAACACTTCTATTTTGAATATTCTATTATCAAGTGTCTTCTTACTAGATCTCAATGTCTTGTTGGGAGCAGCTTCAACTTTTTTCATGATATCATCTTGGTTCCGTTTTTTTTCCTTCAGGAAGGGAGAGAGATTGACATATGATACTCGCACCAATCTGACACTTTTTCGTTCATTTACAGCAGCAGACTATGTTGCTTCTCAGCGGCTTAGGTGAGACATATTGTTTCTTAAGCTACCTAAAGTACAAGAATCTAATCTTAGTCACGAATTTGCTTCAGAATCCAACTGAGAACCGTTTTATCGATTTAGAAATACGGTGGCATCTGAAATGACTGAAAGCGTTAGATAATTGTAGCTCACCATGGGTTGGATTTTTCACTTTATTAGTTGCCAAAACTTTTAAGTTGATAATTTTGGAAACCAGATACAATGCTGTTGAAAGAAGTCAGTTACGTTCCAAACCAAGTATATGACTTGATAAGATGTGGTGGAGTGTTTAACATCCTGAAAGACTGAAAGTAATGCTTTATACAAGAAACATGATTGACATAACTCTTGTCTGGGTTGTTGCAGGCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATCATTGTGACACCAACAACTGGGTACGTCAAGGAAGTCTCTGGAAAGTGTGGAATTAACTTTCATATCCTTCACCAAGGCTTTCTTGTATTAATCACTCATCTTTTTCAAACTATTTCCCTGTTTTTTTTCCCGTTCTTTTTTGTTTCTCCCTTTCTTTTGCTTGGTCAGACTTCTGTGCCTGATATGATATTCTCAGAAATGGAAGTGGTCATGTGACTGACTTGTTAATCTAGATATCTAAAACATTTAATGGCAAGTCCAGTATGTGTAGACGGTAGATTAGGGTGTTGATACATGTCAAAGTTAGCTATATGACATACTGAGCTTGTGTGTCAGGAAGTCAATTGTTTTGTTGGAATAAATGCAGCAATGTTCCTAAACTTATTTCTTCTACTTCTGTCTTTTTCAGCATGACAGCACCCATAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTAATATGCAAGTTACAGGTTTTTCCCTTCACTCACCCCTTACCACATATCATCAACTATGGAGTTAGTTGAAATTATACCGATACTGTTTCTCTACTATTCTCGGACAGCTTACTGTTTTGAAGTTTCAGGTTAGATTTCTATTCATGTGATGATCTACTTTCAGGAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCTGTAAGTTGTCTCACGGATCTGCATTTTGGTTTATCTGTCTTAAGGGGATGGGTTTTCATACAATTAAATTGTCTACCGAAAAGTCCTTGCCCTAATGTTTCGATAGTTTTCATAAAAATGTAGCAGCAGATATATTCCAAAAAGCTTTATCCCCTCAGAAGCATATTTTAGCCTACATCTTCCTTCAGATGATCCATAATGTAGGATTTGTTCATCACATTCAGAATGAGGTATACTCACCTTGTATAACAATGGTAGTTATCGTTATCTCATGTCGCTGAGTTACATGCTCAGGTTGGTTATGACAAGCAAGGG</genome_strand>
        <mrna_strand>TCAACTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCAGCTATCAGAAGAGCATGGATGCAGA..........................................................................................................................................................................ATAGTAGAAATTGTAATACCAGAGTTGCATGAGATGCGCATAGCTCATATTGTTTCTATTGGATCGGAAGCATTATGCGCACTGAATCCAGACTGTTGTGATGG..........................................................................................................................GAAAGGAGAGAGATTGACATATGATACTCGCACCAATCTGACACTTTTTCGTTCATTTACAGCAGCAGACTATGTTGCTGCTCAGCGGCTTAG...........................................................................................................................................................................................................................................................................................................................................................................GCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATCATTGTGACACCAACAACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................CATGACAGCACCCATAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTAATATGCAAGTTACAG....................................................................................................................................................GAAATCTTATGCGGGTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCT......................................................................................................................................................................................................................................................................................................GTTGGTTATGACAAGCAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424081" ref_strand="-" ref_description="SGN-E424081 [STM-43-C7]">
      <seq>cagaaaagcatggatgcgaaacggtagaaattgtaataccagagttgcatgagatgcgcttagctcatgttgtttctattggatctgaagcattatgcgcactgaatccagactgttatgatgggaaaggagagagattgacatatgatactcgcaccaatctggcactttttcgttncattacagcagcagactatgttgctgctcagcggcttaggcggaggttaatgtatttccatatggagattttcaagagggtggatatcattgtgacaccaacgactggcatgacagcacccataattccaccaggtgctcttaaagttggggagactaatttgcaagttacaggaaatcttatgcggttcattataacagcaaatcttctgggacttcctgcagttactgtccctgttggttatgacaagcaagggcttcccataggtatacaactcattggccgaccctggtgtgaagcttccattttgcgcttggctgctgcaattgaggaaacttgtgctgaacccaagaagaagccactgcaatattatgacattctgaaagggaactagaaattaaaacacttatgcgtgcaggtaaacagtaatgtgaatcatgaagctttaagaagatgtggattcatttatcaagattttggtgattcatagaaaccatcttgaaaattgaatgtactgagtttgaggtaccactttatgaaataagggaaaatcaaaagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="62617" stop="77097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74461" g_stop="74480" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.850"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74481" i_stop="74650" i_length="170">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74651" g_stop="74754" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="124" r_length="104" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74755" i_stop="74876" i_length="122">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74877" g_stop="74969" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="217" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74970" i_stop="75332" i_length="363">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75333" g_stop="75401" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="286" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75402" i_stop="75790" i_length="389">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75791" g_stop="75855" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="351" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75856" i_stop="76003" i_length="148">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76004" g_stop="76065" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="413" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76066" i_stop="76359" i_length="294">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76360" g_stop="76455" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="509" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="76456" i_stop="76577" i_length="122">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="76578" g_stop="76812" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="740" r_length="231" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E424081" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424081" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74461" e_stop="74480"/>
          <exon e_start="74651" e_stop="74754"/>
          <exon e_start="74877" e_stop="74969"/>
          <exon e_start="75333" e_stop="75401"/>
          <exon e_start="75791" e_stop="75855"/>
          <exon e_start="76004" e_stop="76065"/>
          <exon e_start="76360" e_stop="76455"/>
          <exon e_start="76578" e_stop="76812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGAGCATGGATGCAGAGTAATTCTATTACCATTACTATGTTCTTCATTGCTTTATCTTGGACTTTGGCAGGTGTATCCTCTAGCTTTGGTTTAGAATTTCAGGAAACCATTAGCTGACAATATTGTGAGAATCTACCATTCTACATGTTAGTATGTCTAATATTTTTCTTTTTCTCATGGTACAAGATCGTAGAAATTGTAATACCAGAGTTGCATGAGATGCGCATAGCTCATGTTGTTTCTATTGGATCGGAAGCATTATGCGCACTGAATCCAGACTGTTGTGATGGGTAAACACTTCTATTTTGAATATTCTATTATCAAGTGTCTTCTTACTAGATCTCAATGTCTTGTTGGGAGCAGCTTCAACTTTTTTCATGATATCATCTTGGTTCCGTTTTTTTTCCTTCAGGAAGGGAGAGAGATTGACATATGATACTCGCACCAATCTGACACTTTTTCGTTCATTTACAGCAGCAGACTATGTTGCTTCTCAGCGGCTTAGGTGAGACATATTGTTTCTTAAGCTACCTAAAGTACAAGAATCTAATCTTAGTCACGAATTTGCTTCAGAATCCAACTGAGAACCGTTTTATCGATTTAGAAATACGGTGGCATCTGAAATGACTGAAAGCGTTAGATAATTGTAGCTCACCATGGGTTGGATTTTTCACTTTATTAGTTGCCAAAACTTTTAAGTTGATAATTTTGGAAACCAGATACAATGCTGTTGAAAGAAGTCAGTTACGTTCCAAACCAAGTATATGACTTGATAAGATGTGGTGGAGTGTTTAACATCCTGAAAGACTGAAAGTAATGCTTTATACAAGAAACATGATTGACATAACTCTTGTCTGGGTTGTTGCAGGCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATCATTGTGACACCAACAACTGGGTACGTCAAGGAAGTCTCTGGAAAGTGTGGAATTAACTTTCATATCCTTCACCAAGGCTTTCTTGTATTAATCACTCATCTTTTTCAAACTATTTCCCTGTTTTTTTTCCCGTTCTTTTTTGTTTCTCCCTTTCTTTTGCTTGGTCAGACTTCTGTGCCTGATATGATATTCTCAGAAATGGAAGTGGTCATGTGACTGACTTGTTAATCTAGATATCTAAAACATTTAATGGCAAGTCCAGTATGTGTAGACGGTAGATTAGGGTGTTGATACATGTCAAAGTTAGCTATATGACATACTGAGCTTGTGTGTCAGGAAGTCAATTGTTTTGTTGGAATAAATGCAGCAATGTTCCTAAACTTATTTCTTCTACTTCTGTCTTTTTCAGCATGACAGCACCCATAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTAATATGCAAGTTACAGGTTTTTCCCTTCACTCACCCCTTACCACATATCATCAACTATGGAGTTAGTTGAAATTATACCGATACTGTTTCTCTACTATTCTCGGACAGCTTACTGTTTTGAAGTTTCAGGTTAGATTTCTATTCATGTGATGATCTACTTTCAGGAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCTGTAAGTTGTCTCACGGATCTGCATTTTGGTTTATCTGTCTTAAGGGGATGGGTTTTCATACAATTAAATTGTCTACCGAAAAGTCCTTGCCCTAATGTTTCGATAGTTTTCATAAAAATGTAGCAGCAGATATATTCCAAAAAGCTTTATCCCCTCAGAAGCATATTTTAGCCTACATCTTCCTTCAGATGATCCATAATGTAGGATTTGTTCATCACATTCAGAATGAGGTATACTCACCTTGTATAACAATGGTAGTTATCGTTATCTCATGTCGCTGAGTTACATGCTCAGGTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGGCCCTGGTGTGAAGCTTCCATTTTGCGCTTGGCGGCTGCAATTGAGGTAATTGACCATTCAACCAAGATAAATGAGAGCAACTATGATTGATTCATAGTGTAAAATACATAATGATCCCTATGTAGAAATGACTTCCAATACCAGTACATATCGTTGCTCATTTTCAGGAAACTTGTGCTGAGCCCAAGAAGAAACCACTGCAATATTATGACATTCTGAAAGGGAACTAGAAATCAAGCTTAGCCTGCAGGAGCCCGGGGTAAACAGTAATGTGGATTATGAAGCTTTAAGAAGATGTGAATTCATTTATCAAGACTTTGGTGATTCATAGAAACCACCTTGAAAATTGAACGTACTGAGTTTGCGGTACCACTTTATGAAATAA-AGCTGATGAAAAGGTTT</genome_strand>
        <mrna_strand>CAGAAAAGCATGGATGCGAA..........................................................................................................................................................................ACGGTAGAAATTGTAATACCAGAGTTGCATGAGATGCGCTTAGCTCATGTTGTTTCTATTGGATCTGAAGCATTATGCGCACTGAATCCAGACTGTTATGATGG..........................................................................................................................GAAAGGAGAGAGATTGACATATGATACTCGCACCAATCTGGCACTTTTTCGTTNCATTACAGCAGCAGACTATGTTGCTGCTCAGCGGCTTAG...........................................................................................................................................................................................................................................................................................................................................................................GCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATCATTGTGACACCAACGACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................CATGACAGCACCCATAATTCCACCAGGTGCTCTTAAAGTTGGGGAGACTAATTTGCAAGTTACAG....................................................................................................................................................GAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCT......................................................................................................................................................................................................................................................................................................GTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGACCCTGGTGTGAAGCTTCCATTTTGCGCTTGGCTGCTGCAATTGAG..........................................................................................................................GAAACTTGTGCTGAACCCAAGAAGAAGCCACTGCAATATTATGACATTCTGAAAGGGAACTAGAAATTAA---AACACT-TATGCGTGC-AGGTAAACAGTAATGTGAATCATGAAGCTTTAAGAAGATGTGGATTCATTTATCAAGATTTTGGTGATTCATAGAAACCATCTTGAAAATTGAATGTACTGAGTTTGAGGTACCACTTTATGAAATAAGGGAAAATCAAAAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392070" ref_strand="+" ref_description="SGN-E392070 [TUS-24-L17]">
      <seq>cgcactgaatccagactgttgtgatgggaagggagagagattgacatatgatactcgcaccaatctgacactttttcgttcatttacagcaacagactatgttgcttctcagcggcttaagcggaggttaatgtatttccatatggagattttcaagagggtggatatcaattgtgacaccaacaactggcatgacagcacccataattccaccaagtgctcttaaagttggggagactaatatgcaagttaacaggaaatcttatgcggttcattataacagcaaatcttctgggacttcctgcagttactgtccctgttggttatgacaagcaagggcttcccataggtatacaactcattggccggccctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="74428" stop="76718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74728" g_stop="74754" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74755" i_stop="74876" i_length="122">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74877" g_stop="74969" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="120" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74970" i_stop="75332" i_length="363">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75333" g_stop="75401" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="190" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75402" i_stop="75790" i_length="389">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75791" g_stop="75855" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="256" r_length="66" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75856" i_stop="76003" i_length="148">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76004" g_stop="76065" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="318" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76066" i_stop="76359" i_length="294">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76360" g_stop="76418" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="377" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E392070" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74728" e_stop="74754"/>
          <exon e_start="74877" e_stop="74969"/>
          <exon e_start="75333" e_stop="75401"/>
          <exon e_start="75791" e_stop="75855"/>
          <exon e_start="76004" e_stop="76065"/>
          <exon e_start="76360" e_stop="76418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACTGAATCCAGACTGTTGTGATGGGTAAACACTTCTATTTTGAATATTCTATTATCAAGTGTCTTCTTACTAGATCTCAATGTCTTGTTGGGAGCAGCTTCAACTTTTTTCATGATATCATCTTGGTTCCGTTTTTTTTCCTTCAGGAAGGGAGAGAGATTGACATATGATACTCGCACCAATCTGACACTTTTTCGTTCATTTACAGCAGCAGACTATGTTGCTTCTCAGCGGCTTAGGTGAGACATATTGTTTCTTAAGCTACCTAAAGTACAAGAATCTAATCTTAGTCACGAATTTGCTTCAGAATCCAACTGAGAACCGTTTTATCGATTTAGAAATACGGTGGCATCTGAAATGACTGAAAGCGTTAGATAATTGTAGCTCACCATGGGTTGGATTTTTCACTTTATTAGTTGCCAAAACTTTTAAGTTGATAATTTTGGAAACCAGATACAATGCTGTTGAAAGAAGTCAGTTACGTTCCAAACCAAGTATATGACTTGATAAGATGTGGTGGAGTGTTTAACATCCTGAAAGACTGAAAGTAATGCTTTATACAAGAAACATGATTGACATAACTCTTGTCTGGGTTGTTGCAGGCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATC-ATTGTGACACCAACAACTGGGTACGTCAAGGAAGTCTCTGGAAAGTGTGGAATTAACTTTCATATCCTTCACCAAGGCTTTCTTGTATTAATCACTCATCTTTTTCAAACTATTTCCCTGTTTTTTTTCCCGTTCTTTTTTGTTTCTCCCTTTCTTTTGCTTGGTCAGACTTCTGTGCCTGATATGATATTCTCAGAAATGGAAGTGGTCATGTGACTGACTTGTTAATCTAGATATCTAAAACATTTAATGGCAAGTCCAGTATGTGTAGACGGTAGATTAGGGTGTTGATACATGTCAAAGTTAGCTATATGACATACTGAGCTTGTGTGTCAGGAAGTCAATTGTTTTGTTGGAATAAATGCAGCAATGTTCCTAAACTTATTTCTTCTACTTCTGTCTTTTTCAGCATGACAGCACCCATAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTAATATGCAAGTT-ACAGGTTTTTCCCTTCACTCACCCCTTACCACATATCATCAACTATGGAGTTAGTTGAAATTATACCGATACTGTTTCTCTACTATTCTCGGACAGCTTACTGTTTTGAAGTTTCAGGTTAGATTTCTATTCATGTGATGATCTACTTTCAGGAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCTGTAAGTTGTCTCACGGATCTGCATTTTGGTTTATCTGTCTTAAGGGGATGGGTTTTCATACAATTAAATTGTCTACCGAAAAGTCCTTGCCCTAATGTTTCGATAGTTTTCATAAAAATGTAGCAGCAGATATATTCCAAAAAGCTTTATCCCCTCAGAAGCATATTTTAGCCTACATCTTCCTTCAGATGATCCATAATGTAGGATTTGTTCATCACATTCAGAATGAGGTATACTCACCTTGTATAACAATGGTAGTTATCGTTATCTCATGTCGCTGAGTTACATGCTCAGGTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGGCCCTGGTG</genome_strand>
        <mrna_strand>CGCACTGAATCCAGACTGTTGTGATGG..........................................................................................................................GAAGGGAGAGAGATTGACATATGATACTCGCACCAATCTGACACTTTTTCGTTCATTTACAGCAACAGACTATGTTGCTTCTCAGCGGCTTAA...........................................................................................................................................................................................................................................................................................................................................................................GCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATCAATTGTGACACCAACAACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................CATGACAGCACCCATAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTAATATGCAAGTTAACAG....................................................................................................................................................GAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCT......................................................................................................................................................................................................................................................................................................GTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGGCCCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246569" ref_strand="+" ref_description="SGN-E246569 [cLEF-45-H15]">
      <seq>gcactgaatccagactgttgtgatgggaagggagagagattgacatatgatactcgcaccaatctgacactttttcgttcatttacagcagcagactatgttgcttctcagcggcttaggcggaggttaatgtatttccatatggagattttcaagagggtggatatcattgtgacaccaacaactggcatgacagcacccataattccaccaagtgctcttaaagttggggagactaatatgcaagttacaggaaatcttatgcggttcattataacagcaaatcttctgggacttcctgcagttactgtccctgttggttatgacaagcaagggcttcccataggtatacaactcattggccggccctggtgtgaagcttccattttgcgcttggcggctgcaattgaggaaacttgtgctgagcccaagaagaaaccactgcaatattatgacattctgaaagggaactagaaatcaagcttagcctgcaggagcccggggtaaacagtaatgtggattatgaagctttaagaagatgtgaattcatttatcaagactttggtgattcatagaaaccaccttgaaaattgaacgtactgagtttgcggtaccactttatgaaataaagctgatgaaaaggttttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="74429" stop="77116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74729" g_stop="74754" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74755" i_stop="74876" i_length="122">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74877" g_stop="74969" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="119" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74970" i_stop="75332" i_length="363">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75333" g_stop="75401" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="188" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75402" i_stop="75790" i_length="389">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75791" g_stop="75855" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="253" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75856" i_stop="76003" i_length="148">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76004" g_stop="76065" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="315" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76066" i_stop="76359" i_length="294">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76360" g_stop="76455" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="411" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76456" i_stop="76577" i_length="122">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76578" g_stop="76816" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="650" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E246569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74729" e_stop="74754"/>
          <exon e_start="74877" e_stop="74969"/>
          <exon e_start="75333" e_stop="75401"/>
          <exon e_start="75791" e_stop="75855"/>
          <exon e_start="76004" e_stop="76065"/>
          <exon e_start="76360" e_stop="76455"/>
          <exon e_start="76578" e_stop="76816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTGAATCCAGACTGTTGTGATGGGTAAACACTTCTATTTTGAATATTCTATTATCAAGTGTCTTCTTACTAGATCTCAATGTCTTGTTGGGAGCAGCTTCAACTTTTTTCATGATATCATCTTGGTTCCGTTTTTTTTCCTTCAGGAAGGGAGAGAGATTGACATATGATACTCGCACCAATCTGACACTTTTTCGTTCATTTACAGCAGCAGACTATGTTGCTTCTCAGCGGCTTAGGTGAGACATATTGTTTCTTAAGCTACCTAAAGTACAAGAATCTAATCTTAGTCACGAATTTGCTTCAGAATCCAACTGAGAACCGTTTTATCGATTTAGAAATACGGTGGCATCTGAAATGACTGAAAGCGTTAGATAATTGTAGCTCACCATGGGTTGGATTTTTCACTTTATTAGTTGCCAAAACTTTTAAGTTGATAATTTTGGAAACCAGATACAATGCTGTTGAAAGAAGTCAGTTACGTTCCAAACCAAGTATATGACTTGATAAGATGTGGTGGAGTGTTTAACATCCTGAAAGACTGAAAGTAATGCTTTATACAAGAAACATGATTGACATAACTCTTGTCTGGGTTGTTGCAGGCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATCATTGTGACACCAACAACTGGGTACGTCAAGGAAGTCTCTGGAAAGTGTGGAATTAACTTTCATATCCTTCACCAAGGCTTTCTTGTATTAATCACTCATCTTTTTCAAACTATTTCCCTGTTTTTTTTCCCGTTCTTTTTTGTTTCTCCCTTTCTTTTGCTTGGTCAGACTTCTGTGCCTGATATGATATTCTCAGAAATGGAAGTGGTCATGTGACTGACTTGTTAATCTAGATATCTAAAACATTTAATGGCAAGTCCAGTATGTGTAGACGGTAGATTAGGGTGTTGATACATGTCAAAGTTAGCTATATGACATACTGAGCTTGTGTGTCAGGAAGTCAATTGTTTTGTTGGAATAAATGCAGCAATGTTCCTAAACTTATTTCTTCTACTTCTGTCTTTTTCAGCATGACAGCACCCATAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTAATATGCAAGTTACAGGTTTTTCCCTTCACTCACCCCTTACCACATATCATCAACTATGGAGTTAGTTGAAATTATACCGATACTGTTTCTCTACTATTCTCGGACAGCTTACTGTTTTGAAGTTTCAGGTTAGATTTCTATTCATGTGATGATCTACTTTCAGGAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCTGTAAGTTGTCTCACGGATCTGCATTTTGGTTTATCTGTCTTAAGGGGATGGGTTTTCATACAATTAAATTGTCTACCGAAAAGTCCTTGCCCTAATGTTTCGATAGTTTTCATAAAAATGTAGCAGCAGATATATTCCAAAAAGCTTTATCCCCTCAGAAGCATATTTTAGCCTACATCTTCCTTCAGATGATCCATAATGTAGGATTTGTTCATCACATTCAGAATGAGGTATACTCACCTTGTATAACAATGGTAGTTATCGTTATCTCATGTCGCTGAGTTACATGCTCAGGTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGGCCCTGGTGTGAAGCTTCCATTTTGCGCTTGGCGGCTGCAATTGAGGTAATTGACCATTCAACCAAGATAAATGAGAGCAACTATGATTGATTCATAGTGTAAAATACATAATGATCCCTATGTAGAAATGACTTCCAATACCAGTACATATCGTTGCTCATTTTCAGGAAACTTGTGCTGAGCCCAAGAAGAAACCACTGCAATATTATGACATTCTGAAAGGGAACTAGAAATCAAGCTTAGCCTGCAGGAGCCCGGGGTAAACAGTAATGTGGATTATGAAGCTTTAAGAAGATGTGAATTCATTTATCAAGACTTTGGTGATTCATAGAAACCACCTTGAAAATTGAACGTACTGAGTTTGCGGTACCACTTTATGAAATAAAGCTGATGAAAAGGTTTTGGC</genome_strand>
        <mrna_strand>GCACTGAATCCAGACTGTTGTGATGG..........................................................................................................................GAAGGGAGAGAGATTGACATATGATACTCGCACCAATCTGACACTTTTTCGTTCATTTACAGCAGCAGACTATGTTGCTTCTCAGCGGCTTAG...........................................................................................................................................................................................................................................................................................................................................................................GCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATCATTGTGACACCAACAACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................CATGACAGCACCCATAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTAATATGCAAGTTACAG....................................................................................................................................................GAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCT......................................................................................................................................................................................................................................................................................................GTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGGCCCTGGTGTGAAGCTTCCATTTTGCGCTTGGCGGCTGCAATTGAG..........................................................................................................................GAAACTTGTGCTGAGCCCAAGAAGAAACCACTGCAATATTATGACATTCTGAAAGGGAACTAGAAATCAAGCTTAGCCTGCAGGAGCCCGGGGTAAACAGTAATGTGGATTATGAAGCTTTAAGAAGATGTGAATTCATTTATCAAGACTTTGGTGATTCATAGAAACCACCTTGAAAATTGAACGTACTGAGTTTGCGGTACCACTTTATGAAATAAAGCTGATGAAAAGGTTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314372" ref_strand="+" ref_description="SGN-E314372 [cTOA-21-K9]">
      <seq>ttgtgatgggaagggagagagattgacatatgatactcgcaccaatctgacactttttcgttcatttacagcagcagactatgttgcttctcagcggcttaggcggaggttaatgtatttccatatggagattttcaagagggtggatatcattgtgacaccaacaactggcatgacagcacccataattccaccaagtgctcttaaagttggggagactaatatgcaagttacaggaaatcttatgcggttcattataacagcaaatcttctgggacttcctgcagttactgtccctgttggttatgacaagcaagggcttcccataggtatacaactcattggccggccctggtgtgaagcttccattttgcgcttggcggctgcaattgaggaaacttgtgctgagcccaagaagaaaccactgcaatattatgacattctgaaagggaactagaaatcaagcttagcctgcaggagcccggggtaaacagtaatgtggattatgaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="74576" stop="76997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74746" g_stop="74754" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74755" i_stop="74876" i_length="122">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74877" g_stop="74969" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="102" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74970" i_stop="75332" i_length="363">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75333" g_stop="75401" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="171" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75402" i_stop="75790" i_length="389">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75791" g_stop="75855" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="236" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75856" i_stop="76003" i_length="148">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76004" g_stop="76065" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="298" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76066" i_stop="76359" i_length="294">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76360" g_stop="76455" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="394" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76456" i_stop="76577" i_length="122">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76578" g_stop="76697" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="514" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E314372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74746" e_stop="74754"/>
          <exon e_start="74877" e_stop="74969"/>
          <exon e_start="75333" e_stop="75401"/>
          <exon e_start="75791" e_stop="75855"/>
          <exon e_start="76004" e_stop="76065"/>
          <exon e_start="76360" e_stop="76455"/>
          <exon e_start="76578" e_stop="76697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGATGGGTAAACACTTCTATTTTGAATATTCTATTATCAAGTGTCTTCTTACTAGATCTCAATGTCTTGTTGGGAGCAGCTTCAACTTTTTTCATGATATCATCTTGGTTCCGTTTTTTTTCCTTCAGGAAGGGAGAGAGATTGACATATGATACTCGCACCAATCTGACACTTTTTCGTTCATTTACAGCAGCAGACTATGTTGCTTCTCAGCGGCTTAGGTGAGACATATTGTTTCTTAAGCTACCTAAAGTACAAGAATCTAATCTTAGTCACGAATTTGCTTCAGAATCCAACTGAGAACCGTTTTATCGATTTAGAAATACGGTGGCATCTGAAATGACTGAAAGCGTTAGATAATTGTAGCTCACCATGGGTTGGATTTTTCACTTTATTAGTTGCCAAAACTTTTAAGTTGATAATTTTGGAAACCAGATACAATGCTGTTGAAAGAAGTCAGTTACGTTCCAAACCAAGTATATGACTTGATAAGATGTGGTGGAGTGTTTAACATCCTGAAAGACTGAAAGTAATGCTTTATACAAGAAACATGATTGACATAACTCTTGTCTGGGTTGTTGCAGGCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATCATTGTGACACCAACAACTGGGTACGTCAAGGAAGTCTCTGGAAAGTGTGGAATTAACTTTCATATCCTTCACCAAGGCTTTCTTGTATTAATCACTCATCTTTTTCAAACTATTTCCCTGTTTTTTTTCCCGTTCTTTTTTGTTTCTCCCTTTCTTTTGCTTGGTCAGACTTCTGTGCCTGATATGATATTCTCAGAAATGGAAGTGGTCATGTGACTGACTTGTTAATCTAGATATCTAAAACATTTAATGGCAAGTCCAGTATGTGTAGACGGTAGATTAGGGTGTTGATACATGTCAAAGTTAGCTATATGACATACTGAGCTTGTGTGTCAGGAAGTCAATTGTTTTGTTGGAATAAATGCAGCAATGTTCCTAAACTTATTTCTTCTACTTCTGTCTTTTTCAGCATGACAGCACCCATAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTAATATGCAAGTTACAGGTTTTTCCCTTCACTCACCCCTTACCACATATCATCAACTATGGAGTTAGTTGAAATTATACCGATACTGTTTCTCTACTATTCTCGGACAGCTTACTGTTTTGAAGTTTCAGGTTAGATTTCTATTCATGTGATGATCTACTTTCAGGAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCTGTAAGTTGTCTCACGGATCTGCATTTTGGTTTATCTGTCTTAAGGGGATGGGTTTTCATACAATTAAATTGTCTACCGAAAAGTCCTTGCCCTAATGTTTCGATAGTTTTCATAAAAATGTAGCAGCAGATATATTCCAAAAAGCTTTATCCCCTCAGAAGCATATTTTAGCCTACATCTTCCTTCAGATGATCCATAATGTAGGATTTGTTCATCACATTCAGAATGAGGTATACTCACCTTGTATAACAATGGTAGTTATCGTTATCTCATGTCGCTGAGTTACATGCTCAGGTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGGCCCTGGTGTGAAGCTTCCATTTTGCGCTTGGCGGCTGCAATTGAGGTAATTGACCATTCAACCAAGATAAATGAGAGCAACTATGATTGATTCATAGTGTAAAATACATAATGATCCCTATGTAGAAATGACTTCCAATACCAGTACATATCGTTGCTCATTTTCAGGAAACTTGTGCTGAGCCCAAGAAGAAACCACTGCAATATTATGACATTCTGAAAGGGAACTAGAAATCAAGCTTAGCCTGCAGGAGCCCGGGGTAAACAGTAATGTGGATTATGAAGCTT</genome_strand>
        <mrna_strand>TTGTGATGG..........................................................................................................................GAAGGGAGAGAGATTGACATATGATACTCGCACCAATCTGACACTTTTTCGTTCATTTACAGCAGCAGACTATGTTGCTTCTCAGCGGCTTAG...........................................................................................................................................................................................................................................................................................................................................................................GCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATCATTGTGACACCAACAACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................CATGACAGCACCCATAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTAATATGCAAGTTACAG....................................................................................................................................................GAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCT......................................................................................................................................................................................................................................................................................................GTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGGCCCTGGTGTGAAGCTTCCATTTTGCGCTTGGCGGCTGCAATTGAG..........................................................................................................................GAAACTTGTGCTGAGCCCAAGAAGAAACCACTGCAATATTATGACATTCTGAAAGGGAACTAGAAATCAAGCTTAGCCTGCAGGAGCCCGGGGTAAACAGTAATGTGGATTATGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309035" ref_strand="+" ref_description="SGN-E309035 [cLEZ-1-E5]">
      <seq>ttgcttctcagcggcttaggcggaggttaatgtatttccatatggagattttcaagagggtggatatcattgtgacaccaacaactggcatgacagcacccataattccaccaagtgctcttaaagttggggagactaatatgcaagttacaggaaatcttatgcggttcattataacagcaaatcttctgggacttcctgcagttactgtccctgttggttatgacaagcaagggcttcccataggtatacaactcattggccggccctggtgtgaagcttccattttgcgcttggcggctgcaattgaggaaacttgtgctgagcccaagaagaaaccactgcaatattatgacattctgaaagggaactagaaatcaagcttagcctgcaggagcccggggtaaacagtaatgtggattatgaagctttaagaagatgtgaattcatttatcaagactttggtgattcatagaaaccaccttgaaaattgaacgtactgagtttgcggtaccactttatgaaataaagctgatgaaaaggttttggctaatcaatacaaccatttgcaatgcaaatagaatccagaaacaggtgatgcccgcatagttgcagtgaaattgttaaaccttgtataacaacattatgttcctaaaccccacaatatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="74651" stop="77238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74951" g_stop="74969" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74970" i_stop="75332" i_length="363">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75333" g_stop="75401" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="88" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75402" i_stop="75790" i_length="389">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75791" g_stop="75855" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="153" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75856" i_stop="76003" i_length="148">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76004" g_stop="76065" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="215" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76066" i_stop="76359" i_length="294">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76360" g_stop="76455" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="311" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76456" i_stop="76577" i_length="122">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76578" g_stop="76938" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="672" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E309035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74951" e_stop="74969"/>
          <exon e_start="75333" e_stop="75401"/>
          <exon e_start="75791" e_stop="75855"/>
          <exon e_start="76004" e_stop="76065"/>
          <exon e_start="76360" e_stop="76455"/>
          <exon e_start="76578" e_stop="76938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTCTCAGCGGCTTAGGTGAGACATATTGTTTCTTAAGCTACCTAAAGTACAAGAATCTAATCTTAGTCACGAATTTGCTTCAGAATCCAACTGAGAACCGTTTTATCGATTTAGAAATACGGTGGCATCTGAAATGACTGAAAGCGTTAGATAATTGTAGCTCACCATGGGTTGGATTTTTCACTTTATTAGTTGCCAAAACTTTTAAGTTGATAATTTTGGAAACCAGATACAATGCTGTTGAAAGAAGTCAGTTACGTTCCAAACCAAGTATATGACTTGATAAGATGTGGTGGAGTGTTTAACATCCTGAAAGACTGAAAGTAATGCTTTATACAAGAAACATGATTGACATAACTCTTGTCTGGGTTGTTGCAGGCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATCATTGTGACACCAACAACTGGGTACGTCAAGGAAGTCTCTGGAAAGTGTGGAATTAACTTTCATATCCTTCACCAAGGCTTTCTTGTATTAATCACTCATCTTTTTCAAACTATTTCCCTGTTTTTTTTCCCGTTCTTTTTTGTTTCTCCCTTTCTTTTGCTTGGTCAGACTTCTGTGCCTGATATGATATTCTCAGAAATGGAAGTGGTCATGTGACTGACTTGTTAATCTAGATATCTAAAACATTTAATGGCAAGTCCAGTATGTGTAGACGGTAGATTAGGGTGTTGATACATGTCAAAGTTAGCTATATGACATACTGAGCTTGTGTGTCAGGAAGTCAATTGTTTTGTTGGAATAAATGCAGCAATGTTCCTAAACTTATTTCTTCTACTTCTGTCTTTTTCAGCATGACAGCACCCATAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTAATATGCAAGTTACAGGTTTTTCCCTTCACTCACCCCTTACCACATATCATCAACTATGGAGTTAGTTGAAATTATACCGATACTGTTTCTCTACTATTCTCGGACAGCTTACTGTTTTGAAGTTTCAGGTTAGATTTCTATTCATGTGATGATCTACTTTCAGGAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCTGTAAGTTGTCTCACGGATCTGCATTTTGGTTTATCTGTCTTAAGGGGATGGGTTTTCATACAATTAAATTGTCTACCGAAAAGTCCTTGCCCTAATGTTTCGATAGTTTTCATAAAAATGTAGCAGCAGATATATTCCAAAAAGCTTTATCCCCTCAGAAGCATATTTTAGCCTACATCTTCCTTCAGATGATCCATAATGTAGGATTTGTTCATCACATTCAGAATGAGGTATACTCACCTTGTATAACAATGGTAGTTATCGTTATCTCATGTCGCTGAGTTACATGCTCAGGTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGGCCCTGGTGTGAAGCTTCCATTTTGCGCTTGGCGGCTGCAATTGAGGTAATTGACCATTCAACCAAGATAAATGAGAGCAACTATGATTGATTCATAGTGTAAAATACATAATGATCCCTATGTAGAAATGACTTCCAATACCAGTACATATCGTTGCTCATTTTCAGGAAACTTGTGCTGAGCCCAAGAAGAAACCACTGCAATATTATGACATTCTGAAAGGGAACTAGAAATCAAGCTTAGCCTGCAGGAGCCCGGGGTAAACAGTAATGTGGATTATGAAGCTTTAAGAAGATGTGAATTCATTTATCAAGACTTTGGTGATTCATAGAAACCACCTTGAAAATTGAACGTACTGAGTTTGCGGTACCACTTTATGAAATAAAGCTGATGAAAAGGTTTTGGCTAATCAATACAACCATTTGCAATGCAAATAGAATCCAGAAACAGGTGATGCCCGCATAGTTGCAGTGAAATTGTTAAACCTTGTATAACAACATTATGTTCCTAAACCCCACAATATTTGAT</genome_strand>
        <mrna_strand>TTGCTTCTCAGCGGCTTAG...........................................................................................................................................................................................................................................................................................................................................................................GCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATCATTGTGACACCAACAACTGG.....................................................................................................................................................................................................................................................................................................................................................................................................CATGACAGCACCCATAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTAATATGCAAGTTACAG....................................................................................................................................................GAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCT......................................................................................................................................................................................................................................................................................................GTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGGCCCTGGTGTGAAGCTTCCATTTTGCGCTTGGCGGCTGCAATTGAG..........................................................................................................................GAAACTTGTGCTGAGCCCAAGAAGAAACCACTGCAATATTATGACATTCTGAAAGGGAACTAGAAATCAAGCTTAGCCTGCAGGAGCCCGGGGTAAACAGTAATGTGGATTATGAAGCTTTAAGAAGATGTGAATTCATTTATCAAGACTTTGGTGATTCATAGAAACCACCTTGAAAATTGAACGTACTGAGTTTGCGGTACCACTTTATGAAATAAAGCTGATGAAAAGGTTTTGGCTAATCAATACAACCATTTGCAATGCAAATAGAATCCAGAAACAGGTGATGCCCGCATAGTTGCAGTGAAATTGTTAAACCTTGTATAACAACATTATGTTCCTAAACCCCACAATATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295210" ref_strand="+" ref_description="SGN-E295210 [cLET-20-J18]">
      <seq>tgacaccaacaactttcattacagcacccataattccaccaagtgggcttaaagttggggagactaatatgcaagttacaggaaatcttatgcggttcattataacagcaaatcttctgggacttcctgcagttactgtccctgttggttatgacaagcaagggcttcccataggtatacaactcattggccggccctggtgtgaagcttccattttgcgcttggcggctgcaattgaggaaacttgtgctgagcccaagaagaaaccactgcaatattatgacattctgaaagggaactagaaatcaagcttagcctgcaggagcccggggtaaacatgtgggaggattatgaagctttaagaagatgtgaattcatttatcaagactttggtgattcatagaaaccaccttgaaaattgaacgtactgagtttgcggtaccactttatgaaataaagctgatgaaaaggttttggctaatcaatacaaccatttgcaatgcaaatagaatccagaaacaggtgatgcccgcatagttgcagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="75491" stop="77183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75791" g_stop="75855" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="81" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75856" i_stop="76003" i_length="148">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76004" g_stop="76065" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="143" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76066" i_stop="76359" i_length="294">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76360" g_stop="76455" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="239" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76456" i_stop="76577" i_length="122">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76578" g_stop="76883" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="545" r_length="306" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E295210" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75791" e_stop="75855"/>
          <exon e_start="76004" e_stop="76065"/>
          <exon e_start="76360" e_stop="76455"/>
          <exon e_start="76578" e_stop="76883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGACAGCACCCATAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTAATATGCAAGTTACAGGTTTTTCCCTTCACTCACCCCTTACCACATATCATCAACTATGGAGTTAGTTGAAATTATACCGATACTGTTTCTCTACTATTCTCGGACAGCTTACTGTTTTGAAGTTTCAGGTTAGATTTCTATTCATGTGATGATCTACTTTCAGGAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCTGTAAGTTGTCTCACGGATCTGCATTTTGGTTTATCTGTCTTAAGGGGATGGGTTTTCATACAATTAAATTGTCTACCGAAAAGTCCTTGCCCTAATGTTTCGATAGTTTTCATAAAAATGTAGCAGCAGATATATTCCAAAAAGCTTTATCCCCTCAGAAGCATATTTTAGCCTACATCTTCCTTCAGATGATCCATAATGTAGGATTTGTTCATCACATTCAGAATGAGGTATACTCACCTTGTATAACAATGGTAGTTATCGTTATCTCATGTCGCTGAGTTACATGCTCAGGTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGGCCCTGGTGTGAAGCTTCCATTTTGCGCTTGGCGGCTGCAATTGAGGTAATTGACCATTCAACCAAGATAAATGAGAGCAACTATGATTGATTCATAGTGTAAAATACATAATGATCCCTATGTAGAAATGACTTCCAATACCAGTACATATCGTTGCTCATTTTCAGGAAACTTGTGCTGAGCCCAAGAAGAAACCACTGCAATATTATGACATTCTGAAAGGGAACTAGAAATCAAGCTTAGCCTGCAGGAGCCCGGGGTAAACAGTAATGTGGATTATGAAGCTTTAAGAAGATGTGAATTCATTTATCAAGACTTTGGTGATTCATAGAAACCACCTTGAAAATTGAACGTACTGAGTTTGCGGTACCACTTTATGAAATAAAGCTGATGAAAAGGTTTTGGCTAATCAATACAACCATTTGCAATGCAAATAGAATCCAGAAACAGGTGATGCCCGCATAGTTGCAGTG</genome_strand>
        <mrna_strand>CATTACAGCACCCATAATTCCACCAAGTGGGCTTAAAGTTGGGGAGACTAATATGCAAGTTACAG....................................................................................................................................................GAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCT......................................................................................................................................................................................................................................................................................................GTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGGCCCTGGTGTGAAGCTTCCATTTTGCGCTTGGCGGCTGCAATTGAG..........................................................................................................................GAAACTTGTGCTGAGCCCAAGAAGAAACCACTGCAATATTATGACATTCTGAAAGGGAACTAGAAATCAAGCTTAGCCTGCAGGAGCCCGGGGTAAACATGTGGGAGGATTATGAAGCTTTAAGAAGATGTGAATTCATTTATCAAGACTTTGGTGATTCATAGAAACCACCTTGAAAATTGAACGTACTGAGTTTGCGGTACCACTTTATGAAATAAAGCTGATGAAAAGGTTTTGGCTAATCAATACAACCATTTGCAATGCAAATAGAATCCAGAAACAGGTGATGCCCGCATAGTTGCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244285" ref_strand="+" ref_description="SGN-E244285 [cLEF-37-G1](-)">
      <seq>ttccattttgcgcttggcggctgcaattgaggaaacttgtgctgagcccaagaagaaacctctgcaatattatgacattctgaaagggaactagaaatcaagcttagcctgcaggagcccggggtaaacagtaatgtggattatgaagctttaagaagatgtgaattcatttatcaagactttggtgattcatagaaaccaccttgaaaattgaacgtactgagtttgcggtaccactttatgaaataaagctgatgaaaaggttttggctaatcaatacaaccatttgcaatgcaaatagaatccagaaacaggtgatgcccgcatagttgcagtgaaattgttaaaccttgtataacaacattatgttcctaaaccccacaatatttgatctcgaaagggaaaaaataagaacacgaatttctaattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="76125" stop="77277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76425" g_stop="76455" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76456" i_stop="76577" i_length="122">
            <donor d_prob="0.939" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76578" g_stop="76986" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="440" r_length="409" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E244285" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76425" e_stop="76455"/>
          <exon e_start="76578" e_stop="76986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTTTGCGCTTGGCGGCTGCAATTGAGGTAATTGACCATTCAACCAAGATAAATGAGAGCAACTATGATTGATTCATAGTGTAAAATACATAATGATCCCTATGTAGAAATGACTTCCAATACCAGTACATATCGTTGCTCATTTTCAGGAAACTTGTGCTGAGCCCAAGAAGAAACCACTGCAATATTATGACATTCTGAAAGGGAACTAGAAATCAAGCTTAGCCTGCAGGAGCCCGGGGTAAACAGTAATGTGGATTATGAAGCTTTAAGAAGATGTGAATTCATTTATCAAGACTTTGGTGATTCATAGAAACCACCTTGAAAATTGAACGTACTGAGTTTGCGGTACCACTTTATGAAATAAAGCTGATGAAAAGGTTTTGGCTAATCAATACAACCATTTGCAATGCAAATAGAATCCAGAAACAGGTGATGCCCGCATAGTTGCAGTGAAATTGTTAAACCTTGTATAACAACATTATGTTCCTAAACCCCACAATATTTGATCTCGAAAGGGAGAAAATAAGAACACGAATTTCTAATTGACCCTGATAT</genome_strand>
        <mrna_strand>TTCCATTTTGCGCTTGGCGGCTGCAATTGAG..........................................................................................................................GAAACTTGTGCTGAGCCCAAGAAGAAACCTCTGCAATATTATGACATTCTGAAAGGGAACTAGAAATCAAGCTTAGCCTGCAGGAGCCCGGGGTAAACAGTAATGTGGATTATGAAGCTTTAAGAAGATGTGAATTCATTTATCAAGACTTTGGTGATTCATAGAAACCACCTTGAAAATTGAACGTACTGAGTTTGCGGTACCACTTTATGAAATAAAGCTGATGAAAAGGTTTTGGCTAATCAATACAACCATTTGCAATGCAAATAGAATCCAGAAACAGGTGATGCCCGCATAGTTGCAGTGAAATTGTTAAACCTTGTATAACAACATTATGTTCCTAAACCCCACAATATTTGATCTCGAAAGGGAAAAAATAAGAACACGAATTTCTAATTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216503" ref_strand="+" ref_description="SGN-E216503 [cLEL-1-N14](-)">
      <seq>ggggtaaacagtaatgtggattatgaagctttaagaagatgtgaattcatttatcaagcctttggtgattcatagaaaccaccttgaaaattgaacgtactgagtttgcggtaccactttatgaaataaagctgatgaaaaggttttggctaatcaatacagccatttgcaatgcgaatagaatccagaaacaggtgatgcccgcatagttgcagtgaaaatgttaaaccttgtatagcaacattatgttcctaaaccccccaatatttggtctcgaaagggagaaaataagaacacgaatttctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="76367" stop="77273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76667" g_stop="76972" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="307" polyA_stop="322"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E216503" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76667" e_stop="76972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTAAACAGTAATGTGGATTATGAAGCTTTAAGAAGATGTGAATTCATTTATCAAGACTTTGGTGATTCATAGAAACCACCTTGAAAATTGAACGTACTGAGTTTGCGGTACCACTTTATGAAATAAAGCTGATGAAAAGGTTTTGGCTAATCAATACAACCATTTGCAATGCAAATAGAATCCAGAAACAGGTGATGCCCGCATAGTTGCAGTGAAATTGTTAAACCTTGTATAACAACATTATGTTCCTAAACCCCACAATATTTGATCTCGAAAGGGAGAAAATAAGAACACGAATTTCTA</genome_strand>
        <mrna_strand>GGGGTAAACAGTAATGTGGATTATGAAGCTTTAAGAAGATGTGAATTCATTTATCAAGCCTTTGGTGATTCATAGAAACCACCTTGAAAATTGAACGTACTGAGTTTGCGGTACCACTTTATGAAATAAAGCTGATGAAAAGGTTTTGGCTAATCAATACAGCCATTTGCAATGCGAATAGAATCCAGAAACAGGTGATGCCCGCATAGTTGCAGTGAAAATGTTAAACCTTGTATAGCAACATTATGTTCCTAAACCCCCCAATATTTGGTCTCGAAAGGGAGAAAATAAGAACACGAATTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269789" ref_strand="-" ref_description="SGN-E269789 [cLEM-17-E13]">
      <seq>aaaggttttggttaatcaatacaaccatttgcaatgcaaatagaatccagaaacaggtgatgcccgcatagtttgcagtgaaattgttaaaccttgtataacaacattatgttcctaaaccccacaatatttgatctcgaaagggagaaaataagaacccgaatttttaattgaccctgatatcagctgaaaaaaatcatgttgcataaaccgagacattttcttggctactctgtgtacttgaggacttattcaacagtcaatgcgagagtttggaaacatgtagaaactaatacttgccacatttttcatttacatcagagtgagctcctatttactctgtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="76505" stop="77450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76805" g_stop="77153" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="373"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E269789" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269789" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76805" e_stop="77153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTTTTGGCTAATCAATACAACCATTTGCAATGCAAATAGAATCCAGAAACAGGTGATGCCCGCATAGTT-GCAGTGAAATTGTTAAACCTTGTATAACAACATTATGTTCCTAAACCCCACAATATTTGATCTCGAAAGGGAGAAAATAAGAACACGAATTTCTAATTGACCCTGATATCAGCTGAAAGAAATCATGTTGCATAAGCCGAGACATTCTCTTGGCTACTCTGTGTACTTGAGTACTTATTCAACAGTCAATGCGAGAGTCTGGAAACATGTAGAAACTAATACTTGCCACATTCTTCATTTACATCAGAGTGAGCTCCTATTTACTCTGTGAAACTA</genome_strand>
        <mrna_strand>AAAGGTTTTGGTTAATCAATACAACCATTTGCAATGCAAATAGAATCCAGAAACAGGTGATGCCCGCATAGTTTGCAGTGAAATTGTTAAACCTTGTATAACAACATTATGTTCCTAAACCCCACAATATTTGATCTCGAAAGGGAGAAAATAAGAACCCGAATTTTTAATTGACCCTGATATCAGCTGAAAAAAATCATGTTGCATAAACCGAGACATTTTCTTGGCTACTCTGTGTACTTGAGGACTTATTCAACAGTCAATGCGAGAGTTTGGAAACATGTAGAAACTAATACTTGCCACATTTTTCATTTACATCAGAGTGAGCTCCTATTTACTCTGTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702120" ref_strand="+" ref_description="SGN-E702120 [FA17DD11]">
      <seq>gtctataggagatcagaaatggcgtcgaagctaactccaaagctcttctcatggctgattctgccgacgttgcttctcattttcctctactccctatcccttccactttatgctcctactcctccgaaacccaaaattcccatctctccttcttgtaatctctttaaagggaagtgggttagcgacccgaatcgcagacccatttacgatgagtcctgcccctttcacaggaacgcctggaactgtctcagaaaccaaagagagaatatgggtcggatcaattcttggaaatggaaacccgacaagtgtgatttaactcggatcgacccagttgggttcttgggttcaatgaggaacaagaatattgggtttgttggagattcgttgaatgagaatttcttggtttcgtttttgtgtactcttagagtggctgattctagtgcaaagaaatggaagagaaagggtgcttggagaggagcctattttccaaagttcaatgttaccgtgggttatcatcgtgctgttttgctagccaaatatgagtggctgccaaaacagcttgacgattccaaccaagatggattgaagggaagatatcgagtagatgttgatattccagcagatgattgggctcatattggtgccttttacaatgttctagtcttcaacactggtcattggtggggctttgacaaattccctaaagagacgcctcttgttttctacaaggcagggcaattgattcaacctccattagagatgtttgatgggtttaaggttgttcttgagaatatgattgcctatatagataaagaattacccgaagaaacacttaagttttggcgcttgcaatcaccaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="77883" stop="81154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78183" g_stop="78724" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78725" i_stop="79595" i_length="871">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79596" g_stop="79733" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="680" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79734" i_stop="80672" i_length="939">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80673" g_stop="80854" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="862" r_length="182" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E702120" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78183" e_stop="78724"/>
          <exon e_start="79596" e_stop="79733"/>
          <exon e_start="80673" e_stop="80854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAGAGGAGATCAGAAATGGCGTCGAAGCTAACTCCAAAGCTCTTCTCATGGCTGATTCTGCCGACGTTGCTTCTCATTTTCCTCTACTCCCTATCCCTTCCACTTTATGCTCCTACTCCTCCGAAACCCAAAATTCCCATCTCTCCTTCTTGTAATCTCTTTAAAGGGAAGTGGGTTAGCGACCCGAATCGCAGACCCATTTACGATGAGTCCTGCCCCTTTCACAGGAACGCCTGGAACTGTCTCAGAAACCAAAGAGAGAATATGGGTCGGATCAATTCTTGGAAATGGAAACCCGACAAGTGTGATTTAACTCGGATCGACCCAGTTGGGTTCTTGGGTTCAATGAGGAACAAGAATATTGGGTTTGTTGGAGATTCGTTGAATGAGAATTTCTTGGTTTCGTTTTTGTGTACTCTTAGAGTGGCTGATTCTAGTGCAAAGAAATGGAAGAGAAAGGGTGCTTGGAGAGGAGCCTATTTTCCAAAGTTCAATGTTACCGTGGGTTATCATCGTGCTGTTTTGCTAGCCAAATATGAGTGAGCATATTGCTTTATACGTTATACTTTTAACGTGTTTTGATATTGTAATATATTCCGAGATTCTTGTTATAAATTGTGTTGTTAGTAGCAAATGCAAATATTAGTTTTGATATTGTGTTGTTTAGTAGCAAATGACAATTTTTTACCAGATATTATTGAGTTTGCACCTAATCATGGTTGCTTATCAACACTGAAAGTTGGAGAATTCATGGCTGTACTGTGAGTTGTGGTTCCCTATATTTATAGATTGATTATACAAAATAATGGCTGAGCAACTTCTATGATTTCCTATCCACGGCTAATTTCAAATTCTAGTTCTTCCAAGAATAATTTTGAAGGAAGGAGCTTTGGAAGGCTAGGATTCATAGTGCAATTTTCCAAGAAAAAGTCTGTTCATTCCAGGATGTTTGTAGCATTAATTTACTTTTGTTACGTAAGTCATATGCTTGTATTGGCTAATGTAGAAAGTCATATTTTTACAATGAAATTGGAGCTTTAACTTGAAACTCTTTGTTGTATGAGCTATAACTTGTTGCCTGGATGAGTGCTCAAGTGTAAAATAGAACTTGAATTGTGACTAGCTTCAGTATCTGACATCATAAAGGGACTTTGGTCATTAGAAGAGTGTAGATTAGCTTCTTGATACGGCTGTTGCTCCTCAACTGACCATTTACGTTAATTTTTTAAAAAGTTCTCGTTTTGTCTGGTTAATTATGCTAACAGAAATGAAAACTGTATCTTGTGTACCATTTGCATTACATAGTTTGTCCTCATTCTTGAGTGTTGCCAAAGTTGGATATCAGTCTGAAGTATGATGTGAGTTTTCTTTGAAGTCGTAATCTTACTTGCTCATTACTGATTAAATAAGGTGGCTGCCAAAACAGCTTGACGATTCCAACCAAGATGGATTGAAGGGAAGATATCGAGTAGATGTTGATATTCCAGCAGATGATTGGGCTCATATTGGTGCCTTTTACAATGTTCTAGTCTTCAACACTGGTCATTGGTAATTTTTGTGCCTTCCTTCATGCTGTTTTTACTTTTTCGCACATTCGCTGATATGTCTATCACTTCTGCTGTCCAAATAGAATGGCCAATTTTCCTCTGTTTATTGTGAAATATTTTCATTTTCAGTTGAAGTTTCTCTTACATAATATGTAAAAAAATTGAATTAAGCATCTGGATGACAGTGGGTTGTTGGGTGAAAATATTAACATTGACTACCTGCCCAACCTACTTGATTTTTGATATGCTTTACTTGAGCTGAGGGTCTATCAGAAACAAACAATCTATCTGCCTTCACCTTATGAATATAAGTGTAAGACTGCATGTGCATCACCCTCCTCAGAACCCACTTGTGGGATTACACTGGGTTTGTTGTTGTTGTTGTAACTACCTGCCCAACCTTGCAAACACATCACCTGTATGGATGGAATTTTCAGCCACCTTTGGATGCTAACCACCTAGCTGTACCACTATTGAAACTTGAAAAGCTCTAAAATTTTATTCGAAGACATAAAGGTCTGAACTCCTATCTATCTTCAATGGGAAAAATAAAATTATAAATTTATGCATTGCCAAAAAGCAAAATTTCGCCTTATTCAGTAGAAAAATGTACATGTTTTTTAAGTGGAAGGTGTTATCTTTGTTCTTTCATATGTGTGTGTAACGGAGAGGAAATTGAAGTTCCAATACATGATGGGCTAGGTAGATCAGCTGGTAATTTGTTGTGTGCAGCAACTTTGCACTGTTAACGATTCCAGTTGTGTTTCTTGATTAAAAAAATGATTCCGGTTGTGTTTGATCAAACTTAAAAGCAAGTACTCCTATAATCACAGGTCGGACTAATGATGGTTTTCCTGACATTTCAAATTATTTCACCGACTCTAGTTATTAACGTATTATCTCTAACTCCTTTGCTTTAATGGTTATTAATATCTTCTAGGTGGGGCTTTGACAAATTCCCTAAAGAGACGCCTCTTGTTTTCTACAAGGCAGGGCAATTGATTCAACCTCCATTAGAGATGTTTGATGGGTTTAAGGTTGTTCTTGAGAATATGATTGCCTATATAGATAAAGAATTACCAGAGAAAACACTTAAGTTTTGGCGCTTGCAATCACCAAGGC</genome_strand>
        <mrna_strand>GTCTATAGGAGATCAGAAATGGCGTCGAAGCTAACTCCAAAGCTCTTCTCATGGCTGATTCTGCCGACGTTGCTTCTCATTTTCCTCTACTCCCTATCCCTTCCACTTTATGCTCCTACTCCTCCGAAACCCAAAATTCCCATCTCTCCTTCTTGTAATCTCTTTAAAGGGAAGTGGGTTAGCGACCCGAATCGCAGACCCATTTACGATGAGTCCTGCCCCTTTCACAGGAACGCCTGGAACTGTCTCAGAAACCAAAGAGAGAATATGGGTCGGATCAATTCTTGGAAATGGAAACCCGACAAGTGTGATTTAACTCGGATCGACCCAGTTGGGTTCTTGGGTTCAATGAGGAACAAGAATATTGGGTTTGTTGGAGATTCGTTGAATGAGAATTTCTTGGTTTCGTTTTTGTGTACTCTTAGAGTGGCTGATTCTAGTGCAAAGAAATGGAAGAGAAAGGGTGCTTGGAGAGGAGCCTATTTTCCAAAGTTCAATGTTACCGTGGGTTATCATCGTGCTGTTTTGCTAGCCAAATATGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGCCAAAACAGCTTGACGATTCCAACCAAGATGGATTGAAGGGAAGATATCGAGTAGATGTTGATATTCCAGCAGATGATTGGGCTCATATTGGTGCCTTTTACAATGTTCTAGTCTTCAACACTGGTCATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCTTTGACAAATTCCCTAAAGAGACGCCTCTTGTTTTCTACAAGGCAGGGCAATTGATTCAACCTCCATTAGAGATGTTTGATGGGTTTAAGGTTGTTCTTGAGAATATGATTGCCTATATAGATAAAGAATTACCCGAAGAAACACTTAAGTTTTGGCGCTTGCAATCACCAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339514" ref_strand="+" ref_description="SGN-E339514 [cTOE-16-K19]">
      <seq>ttttggcgcttgcaatcaccaaggcactttcacggtggtgattggaatcaaaatggtagttgcacaatggatgaaccccttgatgaacttcagatataatggggttaacaaagaagcaaggcgactaaatcatttgatcgaagaggttttaaaagatacaactatcagaagcctcgatctgactcacttgagtgagttccgtgcagatgcccatcctgccatttggttggggaaaaaggatgcagtatcggtctggggtcaagactgtatgcattggtgccttcctggtgttccagatacatgggttgatatcttggcccagctaatcactcctcatattttagagacagggtgatcactatagatggttgcaaagcttgcgtgattcatttgcaactgagctcctgatacatcaagacgtcagcttttttgacaacaactacaaacttgctgatctgaaggaggtggtagaaccagttcattattttgtattcccttacattcttcctatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="80530" stop="82151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80830" g_stop="80922" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80923" i_stop="81429" i_length="507">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81430" g_stop="81851" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="515" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E339514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80830" e_stop="80922"/>
          <exon e_start="81430" e_stop="81851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGCGCTTGCAATCACCAAGGCACTTTCACGGTGGTGATTGGAATCAAAATGGTAGTTGCACAATGGATGAACCCCTTGATGAACTTCAGGTATGCAAATGTAGCACTTTTTGGTGAATTTGAGACTTCCACTTTCTTAAGGTAATCAACTTGGTTAGTTACTAATAGAAATGTCCCTTGCATACTAATAGAAATCACTTGGAAATGCATTGCTTAGTCTACAAACTCATGCAAGTAAAGTTGAAAGACATGGATAATTTGTTATATATTTAACTCAACATGTTTTTTAGTCTAACTTAGCAAGGATTTGCCTCCTAAGAAAGCTTATTTTGTCTGACAATTGATACAAAAGTATTTAACTTAACATGTTTGTAATCTAACTTCCTTCAACAAGTGATTTTCCTACTGATAGAAAAAAGTGCTTGTTCCCACATCTACATTTTCTCAGACCATTAGATTTCCTGTTTACATTTTTTGACAAATTATAGGGACTATTATGCACTTGAAAGTTTATTACAGTAAGTAGTGACAACTGATAAGTTTTCTGAAGAAAATCTTACTGATACCTGAACAGCTTGATCTGTGGTTTGATCCCAGATATAATGGGGTTAACAAAGAAGCAAGGCGACTAAATCATTTGATCGAAGAGGTTTTAAAAGATACAACTATCAGAAGCCTCGATCTGACTCACTTGAGTGAGTTCCGTGCAGATGCCCATCCTGCCATTTGGTTGGGGAAAAAGGATGCAGTATCGGTCTGGGGTCAAGACTGTATGCATTGGTGCCTTCCTGGTGTTCCAGATACATGGGTTGATATCTTGGCCCAGCTAATCACTCCTCATATTTTAGAGACAGGGTGATCACTATAGATGGTTGCAAAGCTTGCGTGATTCATTTGCAACTGAGCTCCTGATACATCAAGACGTCAGCTTTTTTGACAACAACTACAAACTTGCTGATCTGAAGGAGGTGGTAGAACCAGTTCATTATTTTGTATTCCCTTACATTCTTCCTATCATT</genome_strand>
        <mrna_strand>TTTTGGCGCTTGCAATCACCAAGGCACTTTCACGGTGGTGATTGGAATCAAAATGGTAGTTGCACAATGGATGAACCCCTTGATGAACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATGGGGTTAACAAAGAAGCAAGGCGACTAAATCATTTGATCGAAGAGGTTTTAAAAGATACAACTATCAGAAGCCTCGATCTGACTCACTTGAGTGAGTTCCGTGCAGATGCCCATCCTGCCATTTGGTTGGGGAAAAAGGATGCAGTATCGGTCTGGGGTCAAGACTGTATGCATTGGTGCCTTCCTGGTGTTCCAGATACATGGGTTGATATCTTGGCCCAGCTAATCACTCCTCATATTTTAGAGACAGGGTGATCACTATAGATGGTTGCAAAGCTTGCGTGATTCATTTGCAACTGAGCTCCTGATACATCAAGACGTCAGCTTTTTTGACAACAACTACAAACTTGCTGATCTGAAGGAGGTGGTAGAACCAGTTCATTATTTTGTATTCCCTTACATTCTTCCTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550004" ref_strand="+" ref_description="SGN-E550004 [TUS-5-O5]">
      <seq>caacgccaatcctccttccatggctttgacaattcatcttctttatccaaatcgtttcccttcacaattcacaaactcccaaaccaatttggtcccttcgatgtataccttcaagaatcatcccaagtttcacaaagtctcgtgcaccaacaacgacgacgacatgaacgatattgacctggcatcagattttgcaacagaggttggaaagatgaacacccagatgatacagaaagaggaagcgttgaagaaaagcaaagagcttttgttcgttgagttttgccactacacgggattgaaatcggaggaaatgaagaagaaatggaagaagttcagtgaggaggaacaatgggatttggttaaaagttttgttttagaatggggtgcccattttcatccattatctgcgaggtctgttaaagaattagtcgatgagtacttagttgaaaacatttctgagttcaattcttctacttcttcttcttcttcttcttttttccctggtctcaaaaaaattgatgggattttcaggggatgataatgaataaattggattttcagttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="82412" stop="83573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82712" g_stop="83273" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83274" i_stop="83419" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.345" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83420" g_stop="83434" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="578" r_length="15" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E550004" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82712" e_stop="83273"/>
          <exon e_start="83420" e_stop="83434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTC-AAAAAATTGATGGGATTTTCAGGGGATGATAATGAATAAATTGGATTTTCAGTTTCCCTTATTGACTTTTAGCTTTAAATATCTCTGCTTTTGATTTGTTAAACTAAACAGGATGGAAATTTGTTTCCAAAGATGCCAAAACATCTTATATATGCTTAAGTGTTGATGTAATTGCCCACCTTTTTTTTTAGCCCACGTAGAAATAAAAAGGAAAT</genome_strand>
        <mrna_strand>CAACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTCAAAAAAATTGATGGGATTTTCAGGGGATGATAATGAATAAATTGGATTTTCAGTT..................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389940" ref_strand="+" ref_description="SGN-E389940 [TUS-4-O13]">
      <seq>caacgccaatcctccttccatggctttgacaattcatcttctttatccaaatcgtttcccttcacaattcacaaactcccaaaccaatttggtcccttcgatgtataccttcaagaatcatcccaagtttcacaaagtctcgtgcaccaacaacgacgacgacatgaacgatattgacctggcatcagattttgcaacagaggttggaaagatgaacacccagatgatacagaaagaggaagcgttgaagaaaagcaaagagcttttgttcgttgagttttgccactacacgggattgaaatcggaggaaatgaagaagaaatggaagaagttcagtgaggaggaacaatgggatttggttaaaagttttgttttagaatggggtgcccattttcatccattatctgcgaggtctgttaaagaattagtcgatgagtacttagttgaaaacatttctgagttcaattcttctacttcttcttcttcttcttcttttttccctggtctcaaaaaaattgatgggattttcaggggatgataatgaataaattggattttcagttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="82412" stop="83573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82712" g_stop="83276" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E389940" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82712" e_stop="83276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTC-AAAAAATTGATGGGATTTTCAGGGGATGATAATGAATAAATTGGATTTTCAGTTTCC</genome_strand>
        <mrna_strand>CAACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTCAAAAAAATTGATGGGATTTTCAGGGGATGATAATGAATAAATTGGATTTTCAGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389951" ref_strand="+" ref_description="SGN-E389951 [TUS-4-O5]">
      <seq>caacgccaatcctccttccatggctttgacaattcatcttctttatctaaaccgtttcccttcacaaatcacaaactcccaaaccaatttggtcccttcgatgtataccttcaagaatcatcccaagtttcacaaagtctcgtgcaccaacaacgacgacgacatgaacgatattgacctggcatcagattttgcaacagaggttggaaagatgaacacccagatgatacagaaagaggaagcgttgaagaaaagcaaagagcttttgttcgttgagttttgccactacacgggattgaaatcggaggaaatgaagaagaaatggaagaagttcagtgaggaggaacaatgggatttggttaaaagttttgttttagaatggggtgcccattttcatccattatctgcgaggtctgttaaagaattagtcgatgagtacttagttgaaaacatttctgagttcaattcttctacttcttcttcttcttcttcttttttccctggtctcaaaaaaattgatgggattttcaggggatgataatgaataaattggattttcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="82412" stop="83572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82712" g_stop="83272" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E389951" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82712" e_stop="83272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTC-AAAAAATTGATGGGATTTTCAGGGGATGATAATGAATAAATTGGATTTTCAGT</genome_strand>
        <mrna_strand>CAACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCTAAACCGTTTCCCTTCACAAATCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTCAAAAAAATTGATGGGATTTTCAGGGGATGATAATGAATAAATTGGATTTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389692" ref_strand="+" ref_description="SGN-E389692 [TUS-4-O5](-)">
      <seq>caacgccaatcctccttccatggctttgacaattcatcttctttatccaaatcgtttcccttcacaattcacaaactcccaaaccaatttggtcccttcgatgtataccttcaagaatcatcccaagtttcacaaagtctcgtgcaccaacaacgacgacgacatgaacgatattgacctggcatcagattttgcaacagaggttggaaagatgaacacccagatgatacagaaagaggaagcgttgaagaaaagcaaagagcttttgttcgttgagttttgccactacacgggattgaaatcggaggaaatgaagaagaaatggaagaagttcagtgaggaggaacaatgggatttggttaaaagttttgttttagaatggggtgcccattttcatccattatctgcgaggtctgttaaagaattaggggatgagtacttagttgaaaacatttctgagttcaattcttctacttcttcttcttctgcatcttttttccctggtctcaaaaaaattgatgggattttcaggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="82412" stop="83546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82712" g_stop="83246" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E389692" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82712" e_stop="83246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTC-AAAAAATTGATGGGATTTTCAGGGGAT</genome_strand>
        <mrna_strand>CAACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGGGGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTGCATCTTTTTTCCCTGGTCTCAAAAAAATTGATGGGATTTTCAGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550381" ref_strand="+" ref_description="SGN-E550381 [TUS-5-O5](-)">
      <seq>caacgccaatcctccttccatggctttgacaattcatcttctttatccaaatcgtttcccttcacaattcacaaactcccaaaccaatttggtcccttcgatgtataccttcaagaatcatcccaagtttcacaaagtctcgtgcaccaacaacgacgacgacatgaacgatattgacctggcatcagattttgcaacagaggttggaaagatgaacacccagatgatacagaaagaggaagcgttgaagaaaagcaaagagcttttgttcgttgagttttgccactacacgggattgaaatcggaggaaatgaagaagaaatggaagaagttcagtgaggaggaacaatgggatttggttaaaagttttgttttagaatggggtgcccattttcatccattatctgcgagttctgttaaagaattagtcgaagagtacttagttgaaaacatttctgagttcaattcttctacttcttcttcttgtacttcttttttccctggtctcaaaaaaagagatgggatttcagggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="82412" stop="83525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82712" g_stop="83245" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E550381" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82712" e_stop="83245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTC-AAAAAATTGATGGGATTTTCAGGGGA</genome_strand>
        <mrna_strand>CAACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGTTCTGTTAAAGAATTAGTCGAAGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTGTACTTCTTTTTTCCCTGGTCTCAAAAAAAGAGATGGGA-TTTCAGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389681" ref_strand="+" ref_description="SGN-E389681 [TUS-4-O13](-)">
      <seq>caacgccaatcctccttccatggctttgacaattcatcttctttatccaaatcgtttcccttcacaattcacaaactcccaaaccaatttggtcccttcgatgtataccttcaagaatcatcccaagtttcacaaagtctcgtgcaccaacaacgacgacgacatgaacgatattgacctggcatcagattttgcaacagaggttggaaagatgaacacccagatgatacagaaagaggaagcgttgaagaaaagcaaagagcttttgttcgttgagttttgccactacacgggattgaaatcggaggaaatgaagaagaaatggaagaagttcagtgaggaggaacaatgggatttggttaaaagttttgttttagaatggggtgcccattttcatccattatctgcgaggtctgttaaagaattagtcgatgagtacttagttgaaaacatttctgagttcaattcttctacttcttcttcttcgtattcttttttcccttctctcaaaaaagatgatgggattttcagggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="82412" stop="83545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82712" g_stop="83245" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E389681" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82712" e_stop="83245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTCAAAAAA-TTGATGGGATTTTCAGGGGA</genome_strand>
        <mrna_strand>CAACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCGTATTCTTTTTTCCCTTCTCTCAAAAAAGATGATGGGATTTTCAGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228439" ref_strand="+" ref_description="SGN-E228439 [cLED-3-G17]">
      <seq>aacgccaatcctccttccatggctttgacaattcatcttctttatccaaatcgtttcccttcacaattcacaaactcccaaaccaatttggtcccttcgatgtataccttcaagaatcatcccaagtttcacaaagtctcgtgcaccaacaacgacgacgacatgaacgatattgacctggcatcagattttgcaacagaggttggaaagatgaacacccagatgatacagaaagaggaagcgttgaagaaaagcaaagagcttttgttcgttgagttttgccactacacgggattgaaatcggaggaaatgaagaagaaatggaagaagttcagtgaggaggaacaatgggatttggttaaaagttttgttttagaatggggtgcccattttcatccattatctgcgaggtctgttaaagaattagtcgatgagtacttagttgaaaacatttctgagttcaattcttctacttcttcttcttcttcttcttttttccctggtctcaaaaaaattgatgggattttcaggggatgataatgaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="82413" stop="83558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82713" g_stop="83258" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E228439" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82713" e_stop="83258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTC-AAAAAATTGATGGGATTTTCAGGGGATGATAATGAATAA</genome_strand>
        <mrna_strand>AACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTCAAAAAAATTGATGGGATTTTCAGGGGATGATAATGAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228405" ref_strand="+" ref_description="SGN-E228405 [cLED-3-J22]">
      <seq>aacgccaatcctccttccatggctttgacaattcatcttctttatccaaatcgtttcccttcacaattcacaaactcccaaaccaatttggtcccttcgatgtataccttcaagaatcatcccaagtttcacaaagtctcgtgcaccaacaacgacgacgacatgaacgatattgacctggcatcagattttgcaacagaggttggaaagatgaacacccagatgatacagaaagaggaagcgttgaagaaaagcaaagagcttttgttcgttgagttttgccactacacgggattgaaatcggaggaaatgaagaagaaatggaagaagttcagtgaggaggaacaatgggatttggttaaaagttttgttttagaatggggtgcccattttcatccattatctgcgaggtctgttaaagaattagtcgatgagtacttagttgaaaacatttctgagttcaattcttctacttcttcttcttcttcttcttttttccctggtctcaaaaaaattgatgggattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="82413" stop="83539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82713" g_stop="83239" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E228405" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82713" e_stop="83239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTC-AAAAAATTGATGGGATTTTC</genome_strand>
        <mrna_strand>AACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTCAAAAAAATTGATGGGATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322891" ref_strand="+" ref_description="SGN-E322891 [cTOB-30-P24]">
      <seq>gccaatcctccttccatggctttgacaattcatcttctttatccaaatcgtttcccttcacaattcacaaactcccaaaccaatttggtcccttcgatgtataccttcaagaatcatcccaagtttcacaaagtctcgtgcaccaacaacgacgacgacatgaacgatattgacctggcatcagattttgcaacagaggttggaaagatgaacacccagatgatacagaaagaggaagcgttgaagaaaagcaaagagcttttgttcgttgagttttgccactacacgggattgaaatcggaggaaatgaagaagaaatggaagaagttcagtgaggaggaacaatgggatttggttaaaagttttgttttagaatggggtgcccattttcatccattatctgcgaggtctgttaaagaattagtcgatgagtacttagttgaaaacatttctgagttcaattcttctacttcttcttcttcttcttcttttttccctggtctcaaaaaattgatgggattttcaggggatgataatgaataaattggattttcaagtttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="82416" stop="83575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82716" g_stop="83284" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E322891" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82716" e_stop="83284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTCAAAAAATTGATGGGATTTTCAGGGGATGATAATGAATAAATTGGATTTTC-AGTTTCCCTTATTGA</genome_strand>
        <mrna_strand>GCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTCAAAAAATTGATGGGATTTTCAGGGGATGATAATGAATAAATTGGATTTTCAAGTTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539805" ref_strand="+" ref_description="SGN-E539805 [TUS-59-M3](-)">
      <seq>gttgagagtaagaagaaaaaaaaaatcatttccatggactctcagattctaaaattttggccaattattccttcaaaaaatttaattttcaactccaaaaaagcagttcccattggtggcctatccaatacccgattccgggttgcggcagcggggtccgttcagaagtcagaggaggaatggcgtgccattctctcccctgaccaattccggattttgagacagaaaggcacagagactcaagggagtggagagtataacaagttttttggtgtaggcacctacctctgtgctggttgtggcactccactttacagatccgcaaccaaattcaactcaccctgtggctggccttctttttatgagggtctccctggggccataaatcgcaatacccagatggcataaggatggagataacttgtgctgcttgtggaggccatcttggtcatgtttttaaaggtgaatggtttcgtaccccaacaaatgaacgccattgtgtcaacagtatatccctcaagttcaaaccaccgcaattttcttaatgccctcttcctgactatatatatacgtcctgattatgtacaactttgatctaatagtccattctgtcatgtagcttagcaacttcctgttagtctctgtatattttgtttgtaattatgatctgtatatgcttgatgattttattgaagataagtaaagaaatgagctattttcattcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="87568" stop="89213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87868" g_stop="88102" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88103" i_stop="88228" i_length="126">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88229" g_stop="88385" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="393" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88386" i_stop="88568" i_length="183">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.580" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88569" g_stop="88901" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="726" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="727" polyA_stop="765"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E539805" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87868" e_stop="88102"/>
          <exon e_start="88229" e_stop="88385"/>
          <exon e_start="88569" e_stop="88901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGAGTAAGAAGAA-AAAAAAATCATTTCCATGGACTCTCAGATTCTAAAATTTTGGCCAATTATTCCTTCAAAAAATTTAATTTTCAACTCCAAAAAAGCAGTTCCCATTCGTGGCCTATCCAATACCCGATTCCGGGTTGCGGCAGCGGGGTCCGTTCAGAAGTCAGAGGAGGAATGGCGTGCCATTCTCTCCCCTGACCAATTCCGGATTTTGAGACAGAAAGGCACAGAGTATGTATGCTGTAGTTACAATCTTCTTAAATCTGTATCTGTAATGGACAAAATTAACAAACATAAAAACGAATATTGTAGTTGTGTGATGCGTATAATTAAGTATCCCTGATTTTTACTCTACAGGACTCAAGGGAGTGGAGAGTATAACAAGTTTTTTGGTGTAGGCACCTACCTCTGTGCTGGTTGTGGCACTCCACTCTACAGATCCGCAACCAAATTCAACTCACCCTGTGGCTGGCCTTCTTTTTATGAGGGTCTCCCTGGGGCCATAAATCGCAATGTAAGCTTCTTCTCATATCACACTAGCTACATTCGTATGTGGCTTATCACTACCCAAATATGCTTATATCGTTTTACCACAACTCTTTTGGTGACTCGAACTCTATCAATCTCATTTCTAATGCTAGAGTTTCTATAATTAAAACAAGACATTTTGAGTTGATTTGCATGTTATTTCAGCCAGACCCAGATGGCATAAGGATGGAGATAACTTGTGCTGCTTGTGGAGGCCATCTTGGTCATGTTTTTAAAGGTGAATGGTTTCGTACCCCAACAAATGAACGCCATTGTGTCAACAGTATATCCCTCAAGTTCAAACCACCGCAATTTTCTTAATGCCCTCTTCCTGACTATATATATACGTCCTGATTATGTACAACTTTGATCTAATAGTCCATTCTGTCATGTAGCTTAGCAACTTCCTGTTAGTCTCTGTATATTTTGTTTGTAATTATGATCTGTATATGCTTGATGATTTTATTGAAGATAAGTAAAGAAATGAGCTATTTTCATTCAA</genome_strand>
        <mrna_strand>GTTGAGAGTAAGAAGAAAAAAAAAATCATTTCCATGGACTCTCAGATTCTAAAATTTTGGCCAATTATTCCTTCAAAAAATTTAATTTTCAACTCCAAAAAAGCAGTTCCCATTGGTGGCCTATCCAATACCCGATTCCGGGTTGCGGCAGCGGGGTCCGTTCAGAAGTCAGAGGAGGAATGGCGTGCCATTCTCTCCCCTGACCAATTCCGGATTTTGAGACAGAAAGGCACAGA..............................................................................................................................GACTCAAGGGAGTGGAGAGTATAACAAGTTTTTTGGTGTAGGCACCTACCTCTGTGCTGGTTGTGGCACTCCACTTTACAGATCCGCAACCAAATTCAACTCACCCTGTGGCTGGCCTTCTTTTTATGAGGGTCTCCCTGGGGCCATAAATCGCAAT.......................................................................................................................................................................................ACCCAGATGGCATAAGGATGGAGATAACTTGTGCTGCTTGTGGAGGCCATCTTGGTCATGTTTTTAAAGGTGAATGGTTTCGTACCCCAACAAATGAACGCCATTGTGTCAACAGTATATCCCTCAAGTTCAAACCACCGCAATTTTCTTAATGCCCTCTTCCTGACTATATATATACGTCCTGATTATGTACAACTTTGATCTAATAGTCCATTCTGTCATGTAGCTTAGCAACTTCCTGTTAGTCTCTGTATATTTTGTTTGTAATTATGATCTGTATATGCTTGATGATTTTATTGAAGATAAGTAAAGAAATGAGCTATTTTCATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284591" ref_strand="+" ref_description="SGN-E284591 [cLES-3-M5]">
      <seq>ttgagagtaagaagaaaaaaaatatcatttccatggactctcagattctaaaattttggccaattattccttcaaaaaatttaattttcaactccaaaaaagcagttcccattcgtggcctatccaatacccgattccgggttgcggcagcggggtccgttcagaagtcagaggaggaatggcgtgccattctctcccctgaccaattccggattttgagacagaaaggcacagagactcaagggagtggagagtataacaagttttttggtgtaggcacctacctctgtgctggttgtggcactccactctacagatccgcaaccaaattcaactcaccctgtggctggccttctttttatgagggtctccctggggccataaatcgcaataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="87569" stop="88685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87869" g_stop="88102" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88103" i_stop="88228" i_length="126">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88229" g_stop="88385" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="392" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E284591" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87869" e_stop="88102"/>
          <exon e_start="88229" e_stop="88385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAGTAAGAAGAAAAAAAA-ATCATTTCCATGGACTCTCAGATTCTAAAATTTTGGCCAATTATTCCTTCAAAAAATTTAATTTTCAACTCCAAAAAAGCAGTTCCCATTCGTGGCCTATCCAATACCCGATTCCGGGTTGCGGCAGCGGGGTCCGTTCAGAAGTCAGAGGAGGAATGGCGTGCCATTCTCTCCCCTGACCAATTCCGGATTTTGAGACAGAAAGGCACAGAGTATGTATGCTGTAGTTACAATCTTCTTAAATCTGTATCTGTAATGGACAAAATTAACAAACATAAAAACGAATATTGTAGTTGTGTGATGCGTATAATTAAGTATCCCTGATTTTTACTCTACAGGACTCAAGGGAGTGGAGAGTATAACAAGTTTTTTGGTGTAGGCACCTACCTCTGTGCTGGTTGTGGCACTCCACTCTACAGATCCGCAACCAAATTCAACTCACCCTGTGGCTGGCCTTCTTTTTATGAGGGTCTCCCTGGGGCCATAAATCGCAAT</genome_strand>
        <mrna_strand>TTGAGAGTAAGAAGAAAAAAAATATCATTTCCATGGACTCTCAGATTCTAAAATTTTGGCCAATTATTCCTTCAAAAAATTTAATTTTCAACTCCAAAAAAGCAGTTCCCATTCGTGGCCTATCCAATACCCGATTCCGGGTTGCGGCAGCGGGGTCCGTTCAGAAGTCAGAGGAGGAATGGCGTGCCATTCTCTCCCCTGACCAATTCCGGATTTTGAGACAGAAAGGCACAGA..............................................................................................................................GACTCAAGGGAGTGGAGAGTATAACAAGTTTTTTGGTGTAGGCACCTACCTCTGTGCTGGTTGTGGCACTCCACTCTACAGATCCGCAACCAAATTCAACTCACCCTGTGGCTGGCCTTCTTTTTATGAGGGTCTCCCTGGGGCCATAAATCGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546918" ref_strand="+" ref_description="SGN-E546918 [TUS-70-I12]">
      <seq>aaaaatcaaaggcttttggggaaggaaggaaacagtttccttccagtcaaagaattaatatatattgtttatttatttttctttaaatggggaaacaagaaccagacccaaagtctttggatgattcaaattcaacacataaacctgacacatcaactcttgatgtgcttgcagctacagatatggcaaaaccttcaatttcatcgtcattacttcctcaaccttcttggtttactgccaaaaggttgcttgcggtattctgtgtgatcaacttaataaattatgtggatcgtggatctattgcgagcaatggtgttaatggaaaccgtcgaacttgtacgaaagacggtacatgttcttctggcagcggaattcagggtgaatttaatttgagtaattttcaggatggggtcatatcatctgctttcatggttgggcttctggtggcatctccaatatttgcctccttcgccaagagggtcaatccgtttagacttattggagttggactgacagtgtggacaatagctattgttggttgtggtttctcaactaatttctggttcattgcaacatgcagaatgctggtgggtgttggtgaagcatctttcataagccttgccgctccttttattgatgataatgcgcctgttgctcagaaaacagcatggctgggaatattttacatgtgtataccaactggtatagcatttggctatgtatatggtggactggttggcaatcatcttagctggcgttgggcattttggaatgaggcattactaatgcttccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="95235" stop="101494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95535" g_stop="95780" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95781" i_stop="96401" i_length="621">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96402" g_stop="96533" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="376" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96534" i_stop="96826" i_length="293">
            <donor d_prob="0.721" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96827" g_stop="96928" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="478" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96929" i_stop="98315" i_length="1387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98316" g_stop="98420" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="583" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98421" i_stop="98541" i_length="121">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98542" g_stop="98617" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="659" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98618" i_stop="100961" i_length="2344">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100962" g_stop="101036" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="734" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101037" i_stop="101132" i_length="96">
            <donor d_prob="0.392" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101133" g_stop="101194" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="796" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E546918" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95535" e_stop="95780"/>
          <exon e_start="96402" e_stop="96533"/>
          <exon e_start="96827" e_stop="96928"/>
          <exon e_start="98316" e_stop="98420"/>
          <exon e_start="98542" e_stop="98617"/>
          <exon e_start="100962" e_stop="101036"/>
          <exon e_start="101133" e_stop="101194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCAAAGGCTTTTGGGGAAGGAAGGAAACAGTTTCCTTCCAGTCAAAGAATTAATATATATTGTTTATTTATTTTTTTCTTTAAATGGGGAAACAAGAACCAGACCCAAAGTCTTTGGATGATTCAAATTCAACACATAAACCTGACACATCAACTCTTGATGTGCTTGCAGCTACAGATATGGCAAAACCTTCAATTTCATCGTCATTACTTCCTCAACCTTCTTGGTTTACTGCCAAAAGGTGACTTTTTCCTTTACCCATTTGCGTGTTAAAGATGAATTTTGTGTTTTTACCAACTGGGTTTCCAAGAATTTTGAATTTCTATTTTTTTTACCAACTGGGTGTCTTTTGAATTTCAATGTTTCTTGGAATTGCAATTATAAGGTTTGATTCGCTTTTCTTGGACATTATAATCGATGAAATTGGTTGCGCCTTCAAGAAACAAAATTCAAGAATGATTTGCGCTGACTTTCTTGGTGGAGTTACCTAATGGGATCTCCTAATTGAATTAATATTCTCTTTATTTACATGGAATTACTGAGTTTTGCACGGAAGGTTTCTATTCCAATTCTGTTATATTTGATATCTTATACTTCTTGAAGTAGTCAATTTTTTATGCATTCTTCAGATTTTGTTTTCTGTACTGATATGTCAAATCTCCAACTGCCAACCCCCAAATCCTCACAATTGTGACCCTTTTCCCACTTTGCTCCTTTGTGACTCGAAACCCTCAAAATCTTGGTAGAAACTCGAAATCCCTTGGTAAGAGGTTATGTCTACTAGCATATCCTGCACTTGTAAGTTGTAACCTTTACTTCACCCGCACTATTTGCCTCTAATGTGTCTGCTATAAATTATCAGGTTGCTTGCGGTATTCTGTGTGATCAACTTAATAAATTATGTGGATCGTGGATCTATTGCGAGCAATGGTGTTAATGGAAACCGTCGAACTTGTACGAAAGATGGTACATGTTCTTCTGGCAGCGGAATTCAGTGAGTATTCTTTTGGAATTTGTTCTATAGCCTGCTCAACTCTGAAAAAGATTTGGTTTTCGAGTTTCCACCCTAAGTTTTCTTCCTTGCTTATGTTTGATATTTTTTCTCTCTGTTCTTCATATTCTTGTTGATTTACTAATGCTTATTATTGAGAATTACAATCCTTTCGGGATAATGTACGTTAATAATGAATTTTCCTCTCCGAATTTAGTAATGGAACTACTTTTTAATTACACATCATCATAATGCGTGCTTAGTCTTATCATGAGCTTGTTTCTGTTTGCTTGCAGGGGTGAATTTAATTTGAGTAATTTTCAGGATGGGGTCATATCATCTGCTTTCATGGTTGGGCTTCTGGTGGCATCTCCAATATTTGCCTCCTTCGCCAAGAGGTAAATCCCCGTATATTACAGGCTTTTGATACCTTGTTGCAGATATATTTCAGACTTAAGAACATTAACTTTGAGAAGTTTATTTGCTTGCGCCTGAGAGAAGTAGGATTTAACAATTGAAACTATCTTTATATGATTTGAGAAAGCGGAAGATTTCATTCAAATTACCTACTAGTTTTACTCTTAATCCTTTTCACCATATGCCAAATGATTTGACCCTTACCACAGGTGAAATCGTTTTCTGAAGACTTAATATAGTATGCAACTTTTCATGCACATGGTAGTTGTAAGATTTAAGAATGAGGTTATAACAATATGATGGAAGTGATGTTGAGATGGTCCAGACATGTAAAGACTAGGTGCGGCAATACACTAGTAAGAAGGTGCGAGAGGTTGGTTATAGAAGGTTTTAGTTGAGGTAGAGAGGTAGAAGTAGACCGAAGAGGAACGGGAGGAGTTGATTAGACCGAACATGACACATCTTCAACTTACGATGGGCAGGCCCTAGATTGGAAGGTTTGGAAATCGATGATAAGGGTAGTAGATAGCCAAGTGTTGTCGTACTATTATCATTTCTGTGTGAGAGGCCCCTTGCATCTTCTCATCTTGTCCTTATTTTGTAGTATTAGTTAGTATTCACTTAGCATCTTATTTTTCAATATTCACTACTAGATTGCCGTACCTGTTGCTTCATATGCTCTATTTATCTTGCTATTTTGTTGCCTTTATTTCTTCTTCAGTCCTGCTTTGATTATACTTATTTTGAGCCAAGTTTTTATCGAATACAACCTCTCTAACCCACCTATAAAGGTAGGGGTAAGGTCTGTACATCCTACCTTCTCCAGAACCCACTTTTGGGACTACATTGGGTATGTTGTTGTTTATTTGCAAGTGTAAGATGTACTTCCAATATGTTGGAAGAAATTTTGACTCTGTTCTCATGAATTACTTGTTGGTAAAAGGTAGCAAAGCCTTTGTAAATGTAACAAAAACCATGTTAAAATCCCTATTAGAGGGTTGGGCCCTACCAAATTTTCTTTCTATTTAACTTCTTTGCTGTAGTACATGAATCTAATTAGAGCAGACCATTGAACTGACAAGTTTGTTTAGTCAAAAGCAAATCACACTACAACCTAAAAAAGAATACTCTTTTACTTCTACATGGGGCATACCTGAAGATGCATTTCTTTCTATGTCTGTCAGAGTTGAAGTAGAACTGTCTTATTTTCAGTTTGCAACTTTGTCATATAATTTGCTTAATAGTATCAGACAGAGTTTCACTAGGGAAATGAAAAATACGCGAATTGTATGCACATTCTTGCTTCTTTAGTTCAATCAATTGCTTGAGTTTCTTACCCATGTCACCATGTGTTTGTTAACTCTGCAGGGTCAATCCGTTTAGACTTATTGGAGTTGGACTGACAGTGTGGACAATAGCTATTGTTGGTTGTGGTTTCTCAACTAATTTCTGGTTCATTGCAACATGCAGAATGTAAGTCTAACCATATTACTCTTCACAAGCTGTCATGTATTACTCGCAATTATTGTGTGTGTGTGTGTGGTTGGGGGGGGGGAGCGTATCTTCGGTTACATTAATATCTCTTCTTTTCCAGGCTGGTGGGTGTTGGTGAAGCATCTTTCATAAGCCTTGCCGCTCCTTTTATTGATGATAACGCGCCTGTTGCTCAGGTCTGTTTTTTTAACATTTATGTTTTTGTGACTGATAATTTCCACTAGAGGTCCCATTTAATACTGCTGCTAATATGATGGTTGTTCTTTTATACTCCCGTTTCATTCTCTGCTGATTACACTGCAATGTGTAAGTACTAAGATCTTTCTTTTGCAATATCTGTGCTTAATCAACTTCCTGAGGGCCCAATAAAGCTATTAAAACAGTATTCTAGGAAGTCATGTATTTTATAATACCATCTTGGTACTTTATTAATAAAACTTGACCTTTAAAAAAGCAACCTTTGTAGTACACTTGCTGAAAGCTCATGGAATAGTGTTGGCAAACAAATATGTGAAGCTATCTATGAAAGAAAACATAATAGGTAGAATTTGAATTACACATTAGAAAAACAAATTCAAATATTTAACCTAACTTGAATCCTTGTTATCACTTATGATCATTCAAACCCAAAGACAATAACGGTTAAATCAAGGAAGAATCAGATAAGAATATAATTAGATTCAGTCGCAAACAGATTTGCAAGAACCTATTGATTAATATTCCAAACACGATTCAATAGAAAGGAAGATAGATAAAATCAATCCAGAGAACTAAAAGAAACAAGAGGGAGAACAAAATGAACTCATACAAAAAATTCTACCCTAAAGATTCAAGCTCAATTTTAAAAATAAGATCAATTGGAAAAATATGGCCGTTATTACTGGACTTGTCGAAGAGATTAAATATAAGAATCAAGGTATATCTTTTTAATCAGTGGTTGAATCGATCATCAGAAGAAGAATCAGGCCAAAAATTAGGATACAATCTCTACTCTTAGAGTGCTATTCTTTTCTTAAAAATGAAAAAGGCTAACTAATGTAATAATGTAATTCCATGCAAATATGGCTACCCGGTGAATATGAGGTCCCATTCACTATTCATGGCCAGGCCAAAAGGGACCACTAGCCTAGAGAATCAAATAGAGAATAGGCCCTGAGTTCACCAGCTTTGGAGAAGATGAAGGGGAAGAAAGGGATCCCGTGGACAGAGTAACCGGAGGAGGCCTGAAATGAAACCGGAAGGAAAGCCACAGGAGTAGGAGTGGAGAGAAAGTGAAAGTGAAAGAGTAAAGGTGGAATGGTTAGTGATGACAGCATAGGACACCAAATGTTCCTTCTCTCTCTTTTGGATCCCATGGATTGCCTCTCAATCTCTAGGACTAGGAAGTGTCAATATTAGGCTAAGCCCTTCAAAATTAGACTTCTCCAAAGGTAAAAACTAACTCGAAATAAGTCTAGGGTTCATAGTTCCTTCGAAAGTGTGCAGACATAGCTCACCCACAAATAATTAAAAATCTCACCAGACTTATGAGGCCATGGATCAGAAAACCCCTTAAGGCCACGGCTATAAATTTCAGTCCACGACCTCAAATTTGAGACATCAATCTTGCATCTCCTGCCTTTTGAGGACATGATTTCAAGCTTGCAGCCACAAGTTCAATCTCTTTTCTTCCTAGTTGGCTCCATATTCTCTTCCAATACTGACGTCACAAGCACATATACATATTTATGAGGCAAGCCTTTTTGGCTCTCCTCACGAACTTGTGTTTGATCGCTCCTTTGGATGTTATAAAAAGGCTATTATTGTTAAAATTGGCTTTGGATGTTATCACTTTTGGTGTTAAGACAACAAATGCTGTTATTAGTGAGTCAACTCTTTTCTCTCAGATGCTGGAATATTTACCCATATTACCTAGGGTCCATTAATCACTAGATTCCCCGATAAAGGAGATATTACCTAGTCCATGAATCACTAGATTCCCTGATAAAGGGGCGATTCCAATTCCTCTTAAAATTTAAGTTAATGGACCTAGGCTTGATAAAACTATATCCCTGCTGTGCGTAGCAACTGCTGAGGTCATTCATTATATTGTTTGACCCACTGAACTTATCTAGTTACTTTATTGAGATGGCTTCTTTGGCTTAGACTATTGCGTTTTCTAGTGTTAGAGAACTTAAACTGCTGAATAATGAGATGAAACTGCTTCAAATGGAGGGAATTGGATAATTAGGATTCATATATCCAACTCTGATTAGCTTAGGATTGAAGCTTAGTTTTTTGCTGTTGGCCGGCTGTTTGGAAATAAGTATGACTAGGTTTTATGCAGGTCATCATTTTTTTTTTTTAAAAAAAGCAAGTGAAATCTTTTGTGCTTCCAATTCACCATTGAACATCAAACTGAAAATCTTTTGTGCAATCACTTGTTTTTTGCATGCTTCTTCAACTCCATTGCTTTGTATATCTCTTGATGCTTTTGCATATAGTATAATTTGTGAATGCTAATTCTCTTCTTTTATCCAGAAAACAGCATGGCTGGGAATATTTTACATGTGTATACCAACTGGTATAGCATTTGGCTATGTATATGGTGGACTGGTAATCTCACTCTTCAGCGGTCAAGTTTAATGTTCTCTTGTGGAATGTGATTTATCATTCATACTAAATTTTACTAATGTTCCACACTTTTGATAGGTTGGCAATCATCTTAGCTGGCGTTGGGCATTTTGGATTGAGGCATTACTAATGCTTCCCTT</genome_strand>
        <mrna_strand>AAAAATCAAAGGCTTTTGGGGAAGGAAGGAAACAGTTTCCTTCCAGTCAAAGAATTAATATATATTGTTTATTTA-TT-TTTCTTTAAATGGGGAAACAAGAACCAGACCCAAAGTCTTTGGATGATTCAAATTCAACACATAAACCTGACACATCAACTCTTGATGTGCTTGCAGCTACAGATATGGCAAAACCTTCAATTTCATCGTCATTACTTCCTCAACCTTCTTGGTTTACTGCCAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTGCGGTATTCTGTGTGATCAACTTAATAAATTATGTGGATCGTGGATCTATTGCGAGCAATGGTGTTAATGGAAACCGTCGAACTTGTACGAAAGACGGTACATGTTCTTCTGGCAGCGGAATTCA.....................................................................................................................................................................................................................................................................................................GGGTGAATTTAATTTGAGTAATTTTCAGGATGGGGTCATATCATCTGCTTTCATGGTTGGGCTTCTGGTGGCATCTCCAATATTTGCCTCCTTCGCCAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAATCCGTTTAGACTTATTGGAGTTGGACTGACAGTGTGGACAATAGCTATTGTTGGTTGTGGTTTCTCAACTAATTTCTGGTTCATTGCAACATGCAGAAT.........................................................................................................................GCTGGTGGGTGTTGGTGAAGCATCTTTCATAAGCCTTGCCGCTCCTTTTATTGATGATAATGCGCCTGTTGCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAGCATGGCTGGGAATATTTTACATGTGTATACCAACTGGTATAGCATTTGGCTATGTATATGGTGGACTG................................................................................................GTTGGCAATCATCTTAGCTGGCGTTGGGCATTTTGGAATGAGGCATTACTAATGCTTCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363437" ref_strand="+" ref_description="SGN-E363437 [cLPP-4-G6]">
      <seq>aaaatcaaaggcttttggggaaggaaggaaacagtttccttccagtcaaagaattaatatatattgtttatttatttttctttaaatggggaaacaagaaccagacccaaagtctttggatgattcaaattcaacacataaacctgacacatcaactcttgatgtgcttgcagctacagatatggcaaaaccttcaatttcatcgtcattacttcctcaaccttcttggtttactgccaaaaggttgcttgcggtattctgtgtgatcaacttaataaattatgtggatcgtggatctattgcgagcaatggtgttaatggaaaccgtcgaacttgtacgaaagacggtacatgttcttctggcagcggaattcagggtgaatttaatttgagtaattttcaggatggggtcatatcatctgctttcatggttgggcttctggtggcatctccaatatttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="95236" stop="97214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95536" g_stop="95780" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95781" i_stop="96401" i_length="621">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96402" g_stop="96533" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="375" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96534" i_stop="96826" i_length="293">
            <donor d_prob="0.721" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96827" g_stop="96914" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="463" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E363437" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95536" e_stop="95780"/>
          <exon e_start="96402" e_stop="96533"/>
          <exon e_start="96827" e_stop="96914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAAGGCTTTTGGGGAAGGAAGGAAACAGTTTCCTTCCAGTCAAAGAATTAATATATATTGTTTATTTATTTTTTTCTTTAAATGGGGAAACAAGAACCAGACCCAAAGTCTTTGGATGATTCAAATTCAACACATAAACCTGACACATCAACTCTTGATGTGCTTGCAGCTACAGATATGGCAAAACCTTCAATTTCATCGTCATTACTTCCTCAACCTTCTTGGTTTACTGCCAAAAGGTGACTTTTTCCTTTACCCATTTGCGTGTTAAAGATGAATTTTGTGTTTTTACCAACTGGGTTTCCAAGAATTTTGAATTTCTATTTTTTTTACCAACTGGGTGTCTTTTGAATTTCAATGTTTCTTGGAATTGCAATTATAAGGTTTGATTCGCTTTTCTTGGACATTATAATCGATGAAATTGGTTGCGCCTTCAAGAAACAAAATTCAAGAATGATTTGCGCTGACTTTCTTGGTGGAGTTACCTAATGGGATCTCCTAATTGAATTAATATTCTCTTTATTTACATGGAATTACTGAGTTTTGCACGGAAGGTTTCTATTCCAATTCTGTTATATTTGATATCTTATACTTCTTGAAGTAGTCAATTTTTTATGCATTCTTCAGATTTTGTTTTCTGTACTGATATGTCAAATCTCCAACTGCCAACCCCCAAATCCTCACAATTGTGACCCTTTTCCCACTTTGCTCCTTTGTGACTCGAAACCCTCAAAATCTTGGTAGAAACTCGAAATCCCTTGGTAAGAGGTTATGTCTACTAGCATATCCTGCACTTGTAAGTTGTAACCTTTACTTCACCCGCACTATTTGCCTCTAATGTGTCTGCTATAAATTATCAGGTTGCTTGCGGTATTCTGTGTGATCAACTTAATAAATTATGTGGATCGTGGATCTATTGCGAGCAATGGTGTTAATGGAAACCGTCGAACTTGTACGAAAGATGGTACATGTTCTTCTGGCAGCGGAATTCAGTGAGTATTCTTTTGGAATTTGTTCTATAGCCTGCTCAACTCTGAAAAAGATTTGGTTTTCGAGTTTCCACCCTAAGTTTTCTTCCTTGCTTATGTTTGATATTTTTTCTCTCTGTTCTTCATATTCTTGTTGATTTACTAATGCTTATTATTGAGAATTACAATCCTTTCGGGATAATGTACGTTAATAATGAATTTTCCTCTCCGAATTTAGTAATGGAACTACTTTTTAATTACACATCATCATAATGCGTGCTTAGTCTTATCATGAGCTTGTTTCTGTTTGCTTGCAGGGGTGAATTTAATTTGAGTAATTTTCAGGATGGGGTCATATCATCTGCTTTCATGGTTGGGCTTCTGGTGGCATCTCCAATATTTGCC</genome_strand>
        <mrna_strand>AAAATCAAAGGCTTTTGGGGAAGGAAGGAAACAGTTTCCTTCCAGTCAAAGAATTAATATATATTGTTTATTTA-TTT-TTCTTTAAATGGGGAAACAAGAACCAGACCCAAAGTCTTTGGATGATTCAAATTCAACACATAAACCTGACACATCAACTCTTGATGTGCTTGCAGCTACAGATATGGCAAAACCTTCAATTTCATCGTCATTACTTCCTCAACCTTCTTGGTTTACTGCCAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTGCGGTATTCTGTGTGATCAACTTAATAAATTATGTGGATCGTGGATCTATTGCGAGCAATGGTGTTAATGGAAACCGTCGAACTTGTACGAAAGACGGTACATGTTCTTCTGGCAGCGGAATTCA.....................................................................................................................................................................................................................................................................................................GGGTGAATTTAATTTGAGTAATTTTCAGGATGGGGTCATATCATCTGCTTTCATGGTTGGGCTTCTGGTGGCATCTCCAATATTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745747" ref_strand="+" ref_description="SGN-E745747 [GI|47105123]">
      <seq>gggggaaacaagaaccagacccaaagtctttggatgattcaaattcaacacataaacctgacacatcaactcttgatgtgcttgcagctacagatatggcaaaaccttcaatttcatcgtcattacttcctcaaccttcttggtttactgccaaaaggttgcttgcggtattctgtgtgatcaacttaataaattgtggatcgtggatctattgcgagcaatggtgttaatggaaaccgtcgaacttgtacgaaagatggtacatgttcttctggcagcggaattcagggtgaatttaatttgagtaattttcaggatggggtcatatcatctgctttcatggttgggcttctggtggcatctccaatatttgcctccttcgccaagagggtcaatccgtttagacttattggagttggactgacagtgtggacaatagctattgttggttgtggtttctcaactaatttctggttcattgcaacatgcagaatgctggtgggtgttggtgaagcatctttcataagccttgccgctccttttattgatgataacgcgcctgttgctcagaaaacagcatggctgggaatattttacatgtgtataccaactggtatagcatttggctatgtatatggtggactggttggcaatcatcttagctggcgttgggcattttggattgaggcattactaatgcttccctttgcagttttaggtttatttatgaaaccattgcaattaaaaggattctctcatatcggatcaaaaaaaccattaacttctcctctgactgcttgcccagaagaagctgttttgaattgtagcaatggtttgtcatcaacacgggaagatcccaaggatggttcgaaaggtgctcctagcaatttgaatgagttggcaagattttggaaggatctgaaaacgcttcatcttgaaaagacttatgtcatcaatgtcctaggatacatagcatataattttgtaattggtgcatattcctattggggacccaaggctggttattacatataccatatgaaaaatgcagacatgatgtttggaggtattactgttatatctggaatattcggaaccttggctggaggctttgttttggatcgaatgacatccacaatatccaatgcctttaagcttctctcagtggcaacatttcttggagcaatattttgctttgctgccttttgttttaagagtttatatgctttcatccctctttttgcaataggagaactgcttgtatttgcaacacagggccctgtaaactatgtctgtctccattccgtcaatccaggtttgagaccactggctatggcgatgtctactgtttcaatccacatatttggtgatgttccttcgtctcctcttgtgggggttgtccaggatcacattaacaattggagggtcactgctttgatgttgacatcagttctacttatagcggctggaatatggtttataggcatctttcttcacagtgtagatagatccaacgaagatagtgagaatcaaataagtgatgctgagagagcaaggtcacaaccattgctcaaggagaaaagtaatgaaccaattgacgtccctgttgaatcctcctagtatttggttgtgatgctactggacaaatgaaatgtaaattctttggttctttttctccggataatggttgtttttgggtccggttttgcacgtacctcgactatttcacctttgtacctgccacctcccattggcacatgtaccatataactctgtcctcctccgaggcttaatgtaaattctttgattctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="95325" stop="106070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95624" g_stop="95780" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95781" i_stop="96401" i_length="621">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96402" g_stop="96533" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="287" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96534" i_stop="96826" i_length="293">
            <donor d_prob="0.721" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96827" g_stop="96928" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="389" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96929" i_stop="98315" i_length="1387">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98316" g_stop="98420" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="494" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98421" i_stop="98541" i_length="121">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98542" g_stop="98617" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="570" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98618" i_stop="100961" i_length="2344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="100962" g_stop="101036" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="645" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101037" i_stop="101132" i_length="96">
            <donor d_prob="0.392" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101133" g_stop="101235" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="748" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="101236" i_stop="101305" i_length="70">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="101306" g_stop="101368" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="811" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="101369" i_stop="102099" i_length="731">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="102100" g_stop="102154" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="866" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="102155" i_stop="102305" i_length="151">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="102306" g_stop="102403" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="867" r_stop="964" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="102404" i_stop="102587" i_length="184">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="102588" g_stop="102664" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="1041" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="102665" i_stop="103084" i_length="420">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="103085" g_stop="103198" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1042" r_stop="1155" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="103199" i_stop="103523" i_length="325">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="103524" g_stop="103643" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1156" r_stop="1275" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="103644" i_stop="104018" i_length="375">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="104019" g_stop="104147" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1276" r_stop="1404" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="104148" i_stop="105233" i_length="1086">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="105234" g_stop="105312" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1405" r_stop="1483" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="105313" i_stop="105440" i_length="128">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="105441" g_stop="105769" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1484" r_stop="1812" r_length="329" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1813" polyA_stop="1826"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E745747" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1814</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95624" e_stop="95780"/>
          <exon e_start="96402" e_stop="96533"/>
          <exon e_start="96827" e_stop="96928"/>
          <exon e_start="98316" e_stop="98420"/>
          <exon e_start="98542" e_stop="98617"/>
          <exon e_start="100962" e_stop="101036"/>
          <exon e_start="101133" e_stop="101235"/>
          <exon e_start="101306" e_stop="101368"/>
          <exon e_start="102100" e_stop="102154"/>
          <exon e_start="102306" e_stop="102403"/>
          <exon e_start="102588" e_stop="102664"/>
          <exon e_start="103085" e_stop="103198"/>
          <exon e_start="103524" e_stop="103643"/>
          <exon e_start="104019" e_stop="104147"/>
          <exon e_start="105234" e_stop="105312"/>
          <exon e_start="105441" e_stop="105769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGAAACAAGAACCAGACCCAAAGTCTTTGGATGATTCAAATTCAACACATAAACCTGACACATCAACTCTTGATGTGCTTGCAGCTACAGATATGGCAAAACCTTCAATTTCATCGTCATTACTTCCTCAACCTTCTTGGTTTACTGCCAAAAGGTGACTTTTTCCTTTACCCATTTGCGTGTTAAAGATGAATTTTGTGTTTTTACCAACTGGGTTTCCAAGAATTTTGAATTTCTATTTTTTTTACCAACTGGGTGTCTTTTGAATTTCAATGTTTCTTGGAATTGCAATTATAAGGTTTGATTCGCTTTTCTTGGACATTATAATCGATGAAATTGGTTGCGCCTTCAAGAAACAAAATTCAAGAATGATTTGCGCTGACTTTCTTGGTGGAGTTACCTAATGGGATCTCCTAATTGAATTAATATTCTCTTTATTTACATGGAATTACTGAGTTTTGCACGGAAGGTTTCTATTCCAATTCTGTTATATTTGATATCTTATACTTCTTGAAGTAGTCAATTTTTTATGCATTCTTCAGATTTTGTTTTCTGTACTGATATGTCAAATCTCCAACTGCCAACCCCCAAATCCTCACAATTGTGACCCTTTTCCCACTTTGCTCCTTTGTGACTCGAAACCCTCAAAATCTTGGTAGAAACTCGAAATCCCTTGGTAAGAGGTTATGTCTACTAGCATATCCTGCACTTGTAAGTTGTAACCTTTACTTCACCCGCACTATTTGCCTCTAATGTGTCTGCTATAAATTATCAGGTTGCTTGCGGTATTCTGTGTGATCAACTTAATAAATTATGTGGATCGTGGATCTATTGCGAGCAATGGTGTTAATGGAAACCGTCGAACTTGTACGAAAGATGGTACATGTTCTTCTGGCAGCGGAATTCAGTGAGTATTCTTTTGGAATTTGTTCTATAGCCTGCTCAACTCTGAAAAAGATTTGGTTTTCGAGTTTCCACCCTAAGTTTTCTTCCTTGCTTATGTTTGATATTTTTTCTCTCTGTTCTTCATATTCTTGTTGATTTACTAATGCTTATTATTGAGAATTACAATCCTTTCGGGATAATGTACGTTAATAATGAATTTTCCTCTCCGAATTTAGTAATGGAACTACTTTTTAATTACACATCATCATAATGCGTGCTTAGTCTTATCATGAGCTTGTTTCTGTTTGCTTGCAGGGGTGAATTTAATTTGAGTAATTTTCAGGATGGGGTCATATCATCTGCTTTCATGGTTGGGCTTCTGGTGGCATCTCCAATATTTGCCTCCTTCGCCAAGAGGTAAATCCCCGTATATTACAGGCTTTTGATACCTTGTTGCAGATATATTTCAGACTTAAGAACATTAACTTTGAGAAGTTTATTTGCTTGCGCCTGAGAGAAGTAGGATTTAACAATTGAAACTATCTTTATATGATTTGAGAAAGCGGAAGATTTCATTCAAATTACCTACTAGTTTTACTCTTAATCCTTTTCACCATATGCCAAATGATTTGACCCTTACCACAGGTGAAATCGTTTTCTGAAGACTTAATATAGTATGCAACTTTTCATGCACATGGTAGTTGTAAGATTTAAGAATGAGGTTATAACAATATGATGGAAGTGATGTTGAGATGGTCCAGACATGTAAAGACTAGGTGCGGCAATACACTAGTAAGAAGGTGCGAGAGGTTGGTTATAGAAGGTTTTAGTTGAGGTAGAGAGGTAGAAGTAGACCGAAGAGGAACGGGAGGAGTTGATTAGACCGAACATGACACATCTTCAACTTACGATGGGCAGGCCCTAGATTGGAAGGTTTGGAAATCGATGATAAGGGTAGTAGATAGCCAAGTGTTGTCGTACTATTATCATTTCTGTGTGAGAGGCCCCTTGCATCTTCTCATCTTGTCCTTATTTTGTAGTATTAGTTAGTATTCACTTAGCATCTTATTTTTCAATATTCACTACTAGATTGCCGTACCTGTTGCTTCATATGCTCTATTTATCTTGCTATTTTGTTGCCTTTATTTCTTCTTCAGTCCTGCTTTGATTATACTTATTTTGAGCCAAGTTTTTATCGAATACAACCTCTCTAACCCACCTATAAAGGTAGGGGTAAGGTCTGTACATCCTACCTTCTCCAGAACCCACTTTTGGGACTACATTGGGTATGTTGTTGTTTATTTGCAAGTGTAAGATGTACTTCCAATATGTTGGAAGAAATTTTGACTCTGTTCTCATGAATTACTTGTTGGTAAAAGGTAGCAAAGCCTTTGTAAATGTAACAAAAACCATGTTAAAATCCCTATTAGAGGGTTGGGCCCTACCAAATTTTCTTTCTATTTAACTTCTTTGCTGTAGTACATGAATCTAATTAGAGCAGACCATTGAACTGACAAGTTTGTTTAGTCAAAAGCAAATCACACTACAACCTAAAAAAGAATACTCTTTTACTTCTACATGGGGCATACCTGAAGATGCATTTCTTTCTATGTCTGTCAGAGTTGAAGTAGAACTGTCTTATTTTCAGTTTGCAACTTTGTCATATAATTTGCTTAATAGTATCAGACAGAGTTTCACTAGGGAAATGAAAAATACGCGAATTGTATGCACATTCTTGCTTCTTTAGTTCAATCAATTGCTTGAGTTTCTTACCCATGTCACCATGTGTTTGTTAACTCTGCAGGGTCAATCCGTTTAGACTTATTGGAGTTGGACTGACAGTGTGGACAATAGCTATTGTTGGTTGTGGTTTCTCAACTAATTTCTGGTTCATTGCAACATGCAGAATGTAAGTCTAACCATATTACTCTTCACAAGCTGTCATGTATTACTCGCAATTATTGTGTGTGTGTGTGTGGTTGGGGGGGGGGAGCGTATCTTCGGTTACATTAATATCTCTTCTTTTCCAGGCTGGTGGGTGTTGGTGAAGCATCTTTCATAAGCCTTGCCGCTCCTTTTATTGATGATAACGCGCCTGTTGCTCAGGTCTGTTTTTTTAACATTTATGTTTTTGTGACTGATAATTTCCACTAGAGGTCCCATTTAATACTGCTGCTAATATGATGGTTGTTCTTTTATACTCCCGTTTCATTCTCTGCTGATTACACTGCAATGTGTAAGTACTAAGATCTTTCTTTTGCAATATCTGTGCTTAATCAACTTCCTGAGGGCCCAATAAAGCTATTAAAACAGTATTCTAGGAAGTCATGTATTTTATAATACCATCTTGGTACTTTATTAATAAAACTTGACCTTTAAAAAAGCAACCTTTGTAGTACACTTGCTGAAAGCTCATGGAATAGTGTTGGCAAACAAATATGTGAAGCTATCTATGAAAGAAAACATAATAGGTAGAATTTGAATTACACATTAGAAAAACAAATTCAAATATTTAACCTAACTTGAATCCTTGTTATCACTTATGATCATTCAAACCCAAAGACAATAACGGTTAAATCAAGGAAGAATCAGATAAGAATATAATTAGATTCAGTCGCAAACAGATTTGCAAGAACCTATTGATTAATATTCCAAACACGATTCAATAGAAAGGAAGATAGATAAAATCAATCCAGAGAACTAAAAGAAACAAGAGGGAGAACAAAATGAACTCATACAAAAAATTCTACCCTAAAGATTCAAGCTCAATTTTAAAAATAAGATCAATTGGAAAAATATGGCCGTTATTACTGGACTTGTCGAAGAGATTAAATATAAGAATCAAGGTATATCTTTTTAATCAGTGGTTGAATCGATCATCAGAAGAAGAATCAGGCCAAAAATTAGGATACAATCTCTACTCTTAGAGTGCTATTCTTTTCTTAAAAATGAAAAAGGCTAACTAATGTAATAATGTAATTCCATGCAAATATGGCTACCCGGTGAATATGAGGTCCCATTCACTATTCATGGCCAGGCCAAAAGGGACCACTAGCCTAGAGAATCAAATAGAGAATAGGCCCTGAGTTCACCAGCTTTGGAGAAGATGAAGGGGAAGAAAGGGATCCCGTGGACAGAGTAACCGGAGGAGGCCTGAAATGAAACCGGAAGGAAAGCCACAGGAGTAGGAGTGGAGAGAAAGTGAAAGTGAAAGAGTAAAGGTGGAATGGTTAGTGATGACAGCATAGGACACCAAATGTTCCTTCTCTCTCTTTTGGATCCCATGGATTGCCTCTCAATCTCTAGGACTAGGAAGTGTCAATATTAGGCTAAGCCCTTCAAAATTAGACTTCTCCAAAGGTAAAAACTAACTCGAAATAAGTCTAGGGTTCATAGTTCCTTCGAAAGTGTGCAGACATAGCTCACCCACAAATAATTAAAAATCTCACCAGACTTATGAGGCCATGGATCAGAAAACCCCTTAAGGCCACGGCTATAAATTTCAGTCCACGACCTCAAATTTGAGACATCAATCTTGCATCTCCTGCCTTTTGAGGACATGATTTCAAGCTTGCAGCCACAAGTTCAATCTCTTTTCTTCCTAGTTGGCTCCATATTCTCTTCCAATACTGACGTCACAAGCACATATACATATTTATGAGGCAAGCCTTTTTGGCTCTCCTCACGAACTTGTGTTTGATCGCTCCTTTGGATGTTATAAAAAGGCTATTATTGTTAAAATTGGCTTTGGATGTTATCACTTTTGGTGTTAAGACAACAAATGCTGTTATTAGTGAGTCAACTCTTTTCTCTCAGATGCTGGAATATTTACCCATATTACCTAGGGTCCATTAATCACTAGATTCCCCGATAAAGGAGATATTACCTAGTCCATGAATCACTAGATTCCCTGATAAAGGGGCGATTCCAATTCCTCTTAAAATTTAAGTTAATGGACCTAGGCTTGATAAAACTATATCCCTGCTGTGCGTAGCAACTGCTGAGGTCATTCATTATATTGTTTGACCCACTGAACTTATCTAGTTACTTTATTGAGATGGCTTCTTTGGCTTAGACTATTGCGTTTTCTAGTGTTAGAGAACTTAAACTGCTGAATAATGAGATGAAACTGCTTCAAATGGAGGGAATTGGATAATTAGGATTCATATATCCAACTCTGATTAGCTTAGGATTGAAGCTTAGTTTTTTGCTGTTGGCCGGCTGTTTGGAAATAAGTATGACTAGGTTTTATGCAGGTCATCATTTTTTTTTTTTAAAAAAAGCAAGTGAAATCTTTTGTGCTTCCAATTCACCATTGAACATCAAACTGAAAATCTTTTGTGCAATCACTTGTTTTTTGCATGCTTCTTCAACTCCATTGCTTTGTATATCTCTTGATGCTTTTGCATATAGTATAATTTGTGAATGCTAATTCTCTTCTTTTATCCAGAAAACAGCATGGCTGGGAATATTTTACATGTGTATACCAACTGGTATAGCATTTGGCTATGTATATGGTGGACTGGTAATCTCACTCTTCAGCGGTCAAGTTTAATGTTCTCTTGTGGAATGTGATTTATCATTCATACTAAATTTTACTAATGTTCCACACTTTTGATAGGTTGGCAATCATCTTAGCTGGCGTTGGGCATTTTGGATTGAGGCATTACTAATGCTTCCCTTTGCAGTTTTAGGTTTATTTATGAAACCATTGCAATTAAAAGGTAACAGTAAATTAGTCTATTGGTCTAATCCTGTATGCATTTTCTGATATTTCTTTGAATGTTTATACAGGATTCTCTCATATCGGATCAAAAAAACCATTAACTTCTCCTCTGACTGCTTGCCCAGAAGAAGGTACTGCCTATTATCATACAAATGTCTATTTCATTTTGTCTACTTAGGCAACAGAGTAGTGTGATTCTTGTGCTAACTTTGATCATTTTTGCTCAGCATGACCTACCTTCTCTGGCATTTTGTCATTGGGAGTTTCTCTGTGCTCTACTTAGTTACTTTGTCAGCAAAAATAGTGTTGGAAAGAATCTTTATTTTAAAAGAAAAATATTACATTGTTATAGTTGAATGGATAAAAGAACTAGGGGCTTAGTGGAACTCCTCAATTGCTAAATGGAAAGCTTCTCTCTAGGTTTCTTTACTTAGAGTTTGTCCATGATTATCTTTTGTTAGTAATTAAAGGAGCATAGGATAGTCCAAAAATAAATAAATGTGTGCCAGCTTGCAGTTCTTACATTTGTATCAGCCTTATAACATTCTTTGTATGGCTTGATATAAATAAATATACTACTTAGTAATATAAGTTGAATTGGTTGGGAAGTATGTTAGGTGCTTCGTTGACAAACAGTTGTGTGGAGAAATTAAAATAAAGATCTACTCTTGATCTTTTTCATTTACTTCCACTAGATACAAAGATACTTGAAGTGAAAGAACAGTAAGCAATAGCTTTGTATCTGTGAACTTGATCAGTGTCTCTTAGCTTTTCCCCCCTTTAGGTGTCCTGTAGGCACTTAACTTGTCATGGTTTTCTCGATTGAACCATTATTTGATCCTAACTCTTGTCGTGAATGCAGCTGTTTTGAATTGTAGCAATGGTTTGTCATCAACACGGGAAGATCCCAAGGATGGGTAAGGAACCTTCATAAAAGTTGTGATGTTATTGATGATCTTAAGACAGCCAAGATCTATCACCCATCCGGCAAACATGATTAAGTATGAGCAATATGTCTTCTGCTTTCACTCAGTTGACTTCTTTCTTGCTTTGTTCTCCTTTCTACAGTTCGAAAGGTGCTCCTAGCAATTTGAATGAGTTGGCAAGATTTTGGAAGGATCTGAAAACGCTTCATCTTGAAAAGACTTATGTCATCAATGTCCTAGGTATTCTATTAACTTTTGTTACCTTCAATTTTTTCATGCTATCTCTTCTATGGATCCCAATATTGGAACAATTTGATGAACCTTTTCTGGATGTCTTTCCTAAAATAAAGAGATCTCACTTATTCTTTAAACTTTTTATTTAAGTTTCTCCACTATGATTCTCAACTTGAGTGGTTTCTTGCAGGATACATAGCATATAATTTTGTAATTGGTGCATATTCCTATTGGGGACCCAAGGCTGGTTATTACATATACCATATGGTAAGCTCTCAGACCACTTCCCGCTTCACAACTATTCAAGGGTTAAGTTTATGCTTGCATTATTCTGTTGATTTTTCTCTTTCACTGTCCTTGGTTACACATTTTGGAAGTTGCTTTGTACAAGTGAGCAATAAGATTCCTTTTGAGTCGAGGGTCTATTGGAAATGGCCTCTCTACCCCACAAAGGCAGCGGTAAGGTCTATGCACATCCTGCCTCCTCCCATCCCACTCGTGGGATTACACTGGATATGTTGTTGTTTCAATGTACCAGTGAAATGAGCTCAACTTGATCATGCCTCATCCACTGACATTCTTTTGTTTTGCATCATCTGGTTATGCTGTTCAGCTTTACGTGAACCAATCAAATACCACAAAAGCATTAAGTACATGTTAGCTGATCTGTAATTAGTGTTTCTGCAGAAAAATGCAGACATGATGTTTGGAGGTATTACTGTTATATCTGGAATATTCGGAACCTTGGCTGGAGGCTTTGTTTTGGATCGAATGACATCCACAATATCCAATGCCTTTAAGGTGGGGTACTTTGTTCCTAAGATTCTGTTGAATCTCTAGAAATATTTCTCATTTAATCCAGTGTCCAAAGTGAAGATCATTCATTCTTTGCTAAATACAAAACAAACAAGACTTTCTCAATCTGGGTTAAAATTATCAAAGAAGAACTGATTCTTTTGACTTGTATAACTCTTGCACCCTGTTTCGATTTTCTCAAATTCGCCATTTTTAGAAGGATGATCTATGATGTTCATTTTTTATGTTAATGACATATCTTCTCTTCTGGTGTTTTCATTTGAATCCTTCAAAACCCTGCTGCTAATGATGTCACTATTTTGTAATGCAGCTTCTCTCAGTGGCAACATTTCTTGGAGCAATATTTTGCTTTGCTGCCTTTTGTTTTAAGAGTTTATATGCTTTCATCCCTCTTTTTGCAATAGGAGAACTGCTTGTATTTGCAACACAGGTAATTCTATTAATCTAATCCAGTACTCTTTATTGTAAATTTGTCTACTTCTTTGTACACTAGTTCAATGGAGTTTAATATTTGGAAATGCTTTCTGCAAAATGGTTTTTCTCTAATTTCCTCGGTTCCTTTACTTTATATTATAAATAAATATGATGAAGTGTGTCATTTGTTTAGGCAAAAAAACGTTTTTTAACTAACAAAATTGTTTGGATGACTGATCATATCCCCCATACATCCTTTTTTCCGTTCTTTTGAAGTTCTCAAAAGTGTAATTGGCTTTCACTTAGTTAAGATGTATAATTAGTTGTATTTTAGGGTTGATACTTTTTGTTTCGAGCTTTACTTCATCTTACATTAAAGCATCTGATGCAGGGCCCTGTAAACTATGTCTGTCTCCATTCCGTCAATCCAGGTTTGAGACCACTGGCTATGGCGATGTCTACTGTTTCAATCCACATATTTGGTGATGTTCCTTCGTCTCCTCTTGTGGGGGTTGTCCAGGTTTGAGCTTGCTTGTTGATCTTGTTTTGCAACTTATATCTTTCTCTCTTTCAAGAGTTCTTTTTTCCGTTTCAAAAGATAGACACATTTTTATGAGCTTTGCTAATGTTATACATGGCTTTAATACTTGTTAGCGTTGTCCCCATTTTTTATTTTCCTTAATGTTCCTAACCTCATCATTCAGATCCTCTGTTTTGTTTACCTTTTTCGGGCTATTCCTCTCAATTTGATTCTTGAGCGTACTCTTCTCCATTTCTTTCTCCGGCAAACTACTTCCCATTCCTTTCTCCGATTAAGCCCCCCAACCCCAAAACCCCTTTTTGTTTTTTTCCCTTTTCTCTTGTATATACACACATTGCAATCAAGCCTTACCATTTGTTATGGTGTGCCGGCTATCTGCAGCATTGTCACTGAAGTTTTACTCCTCCCTGCGGGTGGAGGCTATTCGTACCTCCGACGGCAGAGAACAGTGAAAGCTTCATTCAGCCCGCTTTCATTGTTTATCGAACATTCTAGTTTTGAAGTTCTGTGAGGACACAATATTTTGTAGAGGGAAGAGGCCTAGTGATTGTTCCCATTGTGCTGTTTCGAATCATCAGTTGGTGGTTGCCTCTTTGGCAGATAATGAATAACGCTTGAAATAAGGAAAAAAATGAATTTGCTTTTGTTCCCTCTTCACATAGCAGTGAATAAAATAGCATACAATCTGAAATATGGTGGCTTTGATAAATAGGGTACCATGTGTTACAAGTGCAAGATTGTTCTCTTTCTCCCATGATAATCTTCTTTTCTCCTCCAATAGTCACAAGAATGTGGAAGTGCAAGGCTGCTTTTGTTTGAACAAAAAATTAGTAGTTGCACTTATAGAGTTCCTTGTCAAAAGAAAATATTCGGTTCAACTTATAGTACATGAAAGACATGAAGTCTGTAGGATGATTTCCAATAACTAGTTTAACCGTTAAATTGATTCTGGAAAAGGTCAATTATTGGTGTAGCAGTAGTAAAAGTTATAATTGCAACTATGTCGTTCATTTTATGGTTCTTGATAACATTGATCAATATGCTCCTATGTTTTCTCTTGTACAGGATCACATTAACAATTGGAGGGTCACTGCTTTGATGTTGACATCAGTTCTACTTATAGCGGCTGGAATATGGTTTATAGGTATATTGTACTCATTGAACGCCTCAGAATCCAAATCTTTATCCTTGAAATGAGTCCGACTTGATGTCATTGGCAATACATTTAGGGTGGTTATTAATGATATTTTTTAATGCACTTTTTATGTGTAGGCATCTTTCTTCACAGTGTAGATAGATCCAACGAAGATAGTGAGAATCAAATAAGTGATGCTGAGAGAGCAAGGTCACAACCATTGCTCAAGGAGAAAAGTAATGAACCAATTGACGTCCCTGTTGAATCCTCCTAGTATTTGGTTGTGATGCTACTGGACAAATGAAATGTAAATTCTTTGGTTCTTTTTCTCCGGATAATGGTTGTTTTTGGGTCCGGTTTTGCACGTACCTCGACTATTTCACCTTTGTACCTGCCACCTCCCATTGGCACATGTACCATATAACTCTGTCCTCCTCCGAGGCTTAATGTAAATTCTTTGATTCTT</genome_strand>
        <mrna_strand>GGGGGAAACAAGAACCAGACCCAAAGTCTTTGGATGATTCAAATTCAACACATAAACCTGACACATCAACTCTTGATGTGCTTGCAGCTACAGATATGGCAAAACCTTCAATTTCATCGTCATTACTTCCTCAACCTTCTTGGTTTACTGCCAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTGCGGTATTCTGTGTGATCAACTTAATAAA-T-TGTGGATCGTGGATCTATTGCGAGCAATGGTGTTAATGGAAACCGTCGAACTTGTACGAAAGATGGTACATGTTCTTCTGGCAGCGGAATTCA.....................................................................................................................................................................................................................................................................................................GGGTGAATTTAATTTGAGTAATTTTCAGGATGGGGTCATATCATCTGCTTTCATGGTTGGGCTTCTGGTGGCATCTCCAATATTTGCCTCCTTCGCCAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAATCCGTTTAGACTTATTGGAGTTGGACTGACAGTGTGGACAATAGCTATTGTTGGTTGTGGTTTCTCAACTAATTTCTGGTTCATTGCAACATGCAGAAT.........................................................................................................................GCTGGTGGGTGTTGGTGAAGCATCTTTCATAAGCCTTGCCGCTCCTTTTATTGATGATAACGCGCCTGTTGCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAGCATGGCTGGGAATATTTTACATGTGTATACCAACTGGTATAGCATTTGGCTATGTATATGGTGGACTG................................................................................................GTTGGCAATCATCTTAGCTGGCGTTGGGCATTTTGGATTGAGGCATTACTAATGCTTCCCTTTGCAGTTTTAGGTTTATTTATGAAACCATTGCAATTAAAAG......................................................................GATTCTCTCATATCGGATCAAAAAAACCATTAACTTCTCCTCTGACTGCTTGCCCAGAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTTGAATTGTAGCAATGGTTTGTCATCAACACGGGAAGATCCCAAGGATGG.......................................................................................................................................................TTCGAAAGGTGCTCCTAGCAATTTGAATGAGTTGGCAAGATTTTGGAAGGATCTGAAAACGCTTCATCTTGAAAAGACTTATGTCATCAATGTCCTAG........................................................................................................................................................................................GATACATAGCATATAATTTTGTAATTGGTGCATATTCCTATTGGGGACCCAAGGCTGGTTATTACATATACCATATG....................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATGCAGACATGATGTTTGGAGGTATTACTGTTATATCTGGAATATTCGGAACCTTGGCTGGAGGCTTTGTTTTGGATCGAATGACATCCACAATATCCAATGCCTTTAAG.....................................................................................................................................................................................................................................................................................................................................CTTCTCTCAGTGGCAACATTTCTTGGAGCAATATTTTGCTTTGCTGCCTTTTGTTTTAAGAGTTTATATGCTTTCATCCCTCTTTTTGCAATAGGAGAACTGCTTGTATTTGCAACACAG.......................................................................................................................................................................................................................................................................................................................................................................................GGCCCTGTAAACTATGTCTGTCTCCATTCCGTCAATCCAGGTTTGAGACCACTGGCTATGGCGATGTCTACTGTTTCAATCCACATATTTGGTGATGTTCCTTCGTCTCCTCTTGTGGGGGTTGTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACATTAACAATTGGAGGGTCACTGCTTTGATGTTGACATCAGTTCTACTTATAGCGGCTGGAATATGGTTTATAG................................................................................................................................GCATCTTTCTTCACAGTGTAGATAGATCCAACGAAGATAGTGAGAATCAAATAAGTGATGCTGAGAGAGCAAGGTCACAACCATTGCTCAAGGAGAAAAGTAATGAACCAATTGACGTCCCTGTTGAATCCTCCTAGTATTTGGTTGTGATGCTACTGGACAAATGAAATGTAAATTCTTTGGTTCTTTTTCTCCGGATAATGGTTGTTTTTGGGTCCGGTTTTGCACGTACCTCGACTATTTCACCTTTGTACCTGCCACCTCCCATTGGCACATGTACCATATAACTCTGTCCTCCTCCGAGGCTTAATGTAAATTCTTTGATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546917" ref_strand="+" ref_description="SGN-E546917 [TUS-70-I12](-)">
      <seq>taattggtgcatattcctatgggggacccaaggctggttattacatataccatatgaaaaatgcagacatgatgtttggaggtattactgttatatctggaatattcggaactttggccggaggctttgttttggatcgaatgacatccacaatatccaatgcctttaagcttctctcagtggcaacatttcttggagcaatattttgctttgctgccttttgttttaagagtttatatgctttcatccctctttttgcaataggagaactgcttgtatttgcaacacagggccctgtaaactatgtctgtctccattccgtcaatccaggtttgagaccactggctatggcgatgtctactgtttcaatccacatatttggtgatgttccttcctctcctcttgtgggggttgtccaggatcacattaacaattggagggtcactgctttgatgttgacatcagttctacttatagcggctggaatatggtttttaggcatctttcttcacagtgtagatagatccaacgaagatagtgacaatcaaataagtgatgctgagagagcaaggtcacaaccattgctcaaggagaaaagtaatgaaccaattgaggtccctgttgaatcctcctagtatttggttgtgttgctactggacaaatgaaatgtaaattctttggttctttttctcttgataatggttgtttttgggctcggttttgcacgtacctcgactatttcacctttgtacctgccacctcccattggcacatgtaccatataactctgtcctccgaggcttaatgtaaattctttgattcttatctctgtgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="102309" stop="106085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102609" g_stop="102664" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102665" i_stop="103084" i_length="420">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103085" g_stop="103198" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="170" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103199" i_stop="103523" i_length="325">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103524" g_stop="103643" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="290" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103644" i_stop="104018" i_length="375">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104019" g_stop="104147" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="419" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104148" i_stop="105233" i_length="1086">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105234" g_stop="105312" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="498" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105313" i_stop="105440" i_length="128">
            <donor d_prob="0.833" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105441" g_stop="105794" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="849" r_length="351" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E546917" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102609" e_stop="102664"/>
          <exon e_start="103085" e_stop="103198"/>
          <exon e_start="103524" e_stop="103643"/>
          <exon e_start="104019" e_stop="104147"/>
          <exon e_start="105234" e_stop="105312"/>
          <exon e_start="105441" e_stop="105794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTGGTGCATATTCCTATTGGGGACCCAAGGCTGGTTATTACATATACCATATGGTAAGCTCTCAGACCACTTCCCGCTTCACAACTATTCAAGGGTTAAGTTTATGCTTGCATTATTCTGTTGATTTTTCTCTTTCACTGTCCTTGGTTACACATTTTGGAAGTTGCTTTGTACAAGTGAGCAATAAGATTCCTTTTGAGTCGAGGGTCTATTGGAAATGGCCTCTCTACCCCACAAAGGCAGCGGTAAGGTCTATGCACATCCTGCCTCCTCCCATCCCACTCGTGGGATTACACTGGATATGTTGTTGTTTCAATGTACCAGTGAAATGAGCTCAACTTGATCATGCCTCATCCACTGACATTCTTTTGTTTTGCATCATCTGGTTATGCTGTTCAGCTTTACGTGAACCAATCAAATACCACAAAAGCATTAAGTACATGTTAGCTGATCTGTAATTAGTGTTTCTGCAGAAAAATGCAGACATGATGTTTGGAGGTATTACTGTTATATCTGGAATATTCGGAACCTTGGCTGGAGGCTTTGTTTTGGATCGAATGACATCCACAATATCCAATGCCTTTAAGGTGGGGTACTTTGTTCCTAAGATTCTGTTGAATCTCTAGAAATATTTCTCATTTAATCCAGTGTCCAAAGTGAAGATCATTCATTCTTTGCTAAATACAAAACAAACAAGACTTTCTCAATCTGGGTTAAAATTATCAAAGAAGAACTGATTCTTTTGACTTGTATAACTCTTGCACCCTGTTTCGATTTTCTCAAATTCGCCATTTTTAGAAGGATGATCTATGATGTTCATTTTTTATGTTAATGACATATCTTCTCTTCTGGTGTTTTCATTTGAATCCTTCAAAACCCTGCTGCTAATGATGTCACTATTTTGTAATGCAGCTTCTCTCAGTGGCAACATTTCTTGGAGCAATATTTTGCTTTGCTGCCTTTTGTTTTAAGAGTTTATATGCTTTCATCCCTCTTTTTGCAATAGGAGAACTGCTTGTATTTGCAACACAGGTAATTCTATTAATCTAATCCAGTACTCTTTATTGTAAATTTGTCTACTTCTTTGTACACTAGTTCAATGGAGTTTAATATTTGGAAATGCTTTCTGCAAAATGGTTTTTCTCTAATTTCCTCGGTTCCTTTACTTTATATTATAAATAAATATGATGAAGTGTGTCATTTGTTTAGGCAAAAAAACGTTTTTTAACTAACAAAATTGTTTGGATGACTGATCATATCCCCCATACATCCTTTTTTCCGTTCTTTTGAAGTTCTCAAAAGTGTAATTGGCTTTCACTTAGTTAAGATGTATAATTAGTTGTATTTTAGGGTTGATACTTTTTGTTTCGAGCTTTACTTCATCTTACATTAAAGCATCTGATGCAGGGCCCTGTAAACTATGTCTGTCTCCATTCCGTCAATCCAGGTTTGAGACCACTGGCTATGGCGATGTCTACTGTTTCAATCCACATATTTGGTGATGTTCCTTCGTCTCCTCTTGTGGGGGTTGTCCAGGTTTGAGCTTGCTTGTTGATCTTGTTTTGCAACTTATATCTTTCTCTCTTTCAAGAGTTCTTTTTTCCGTTTCAAAAGATAGACACATTTTTATGAGCTTTGCTAATGTTATACATGGCTTTAATACTTGTTAGCGTTGTCCCCATTTTTTATTTTCCTTAATGTTCCTAACCTCATCATTCAGATCCTCTGTTTTGTTTACCTTTTTCGGGCTATTCCTCTCAATTTGATTCTTGAGCGTACTCTTCTCCATTTCTTTCTCCGGCAAACTACTTCCCATTCCTTTCTCCGATTAAGCCCCCCAACCCCAAAACCCCTTTTTGTTTTTTTCCCTTTTCTCTTGTATATACACACATTGCAATCAAGCCTTACCATTTGTTATGGTGTGCCGGCTATCTGCAGCATTGTCACTGAAGTTTTACTCCTCCCTGCGGGTGGAGGCTATTCGTACCTCCGACGGCAGAGAACAGTGAAAGCTTCATTCAGCCCGCTTTCATTGTTTATCGAACATTCTAGTTTTGAAGTTCTGTGAGGACACAATATTTTGTAGAGGGAAGAGGCCTAGTGATTGTTCCCATTGTGCTGTTTCGAATCATCAGTTGGTGGTTGCCTCTTTGGCAGATAATGAATAACGCTTGAAATAAGGAAAAAAATGAATTTGCTTTTGTTCCCTCTTCACATAGCAGTGAATAAAATAGCATACAATCTGAAATATGGTGGCTTTGATAAATAGGGTACCATGTGTTACAAGTGCAAGATTGTTCTCTTTCTCCCATGATAATCTTCTTTTCTCCTCCAATAGTCACAAGAATGTGGAAGTGCAAGGCTGCTTTTGTTTGAACAAAAAATTAGTAGTTGCACTTATAGAGTTCCTTGTCAAAAGAAAATATTCGGTTCAACTTATAGTACATGAAAGACATGAAGTCTGTAGGATGATTTCCAATAACTAGTTTAACCGTTAAATTGATTCTGGAAAAGGTCAATTATTGGTGTAGCAGTAGTAAAAGTTATAATTGCAACTATGTCGTTCATTTTATGGTTCTTGATAACATTGATCAATATGCTCCTATGTTTTCTCTTGTACAGGATCACATTAACAATTGGAGGGTCACTGCTTTGATGTTGACATCAGTTCTACTTATAGCGGCTGGAATATGGTTTATAGGTATATTGTACTCATTGAACGCCTCAGAATCCAAATCTTTATCCTTGAAATGAGTCCGACTTGATGTCATTGGCAATACATTTAGGGTGGTTATTAATGATATTTTTTAATGCACTTTTTATGTGTAGGCATCTTTCTTCACAGTGTAGATAGATCCAACGAAGATAGTGAGAATCAAATAAGTGATGCTGAGAGAGCAAGGTCACAACCATTGCTCAAGGAGAAAAGTAATGAACCAATTGACGTCCCTGTTGAATCCTCCTAGTATTTGGTTGTGATGCTACTGGACAAATGAAATGTAAATTCTTTGGTTCTTTTTCTCCGGATAATGGTTGTTTTTGGGTCCGGTTTTGCACGTACCTCGACTATTTCACCTTTGTACCTGCCACCTCCCATTGGCACATGTACCATATAACTCTGTCCTCCTCCGAGGCTTAATGTAAATTCTTTGATTCTTATCTCTGTGTAAATAATGTTGCAAA</genome_strand>
        <mrna_strand>TAATTGGTGCATATTCCTATGGGGGACCCAAGGCTGGTTATTACATATACCATATG....................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATGCAGACATGATGTTTGGAGGTATTACTGTTATATCTGGAATATTCGGAACTTTGGCCGGAGGCTTTGTTTTGGATCGAATGACATCCACAATATCCAATGCCTTTAAG.....................................................................................................................................................................................................................................................................................................................................CTTCTCTCAGTGGCAACATTTCTTGGAGCAATATTTTGCTTTGCTGCCTTTTGTTTTAAGAGTTTATATGCTTTCATCCCTCTTTTTGCAATAGGAGAACTGCTTGTATTTGCAACACAG.......................................................................................................................................................................................................................................................................................................................................................................................GGCCCTGTAAACTATGTCTGTCTCCATTCCGTCAATCCAGGTTTGAGACCACTGGCTATGGCGATGTCTACTGTTTCAATCCACATATTTGGTGATGTTCCTTCCTCTCCTCTTGTGGGGGTTGTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACATTAACAATTGGAGGGTCACTGCTTTGATGTTGACATCAGTTCTACTTATAGCGGCTGGAATATGGTTTTTAG................................................................................................................................GCATCTTTCTTCACAGTGTAGATAGATCCAACGAAGATAGTGACAATCAAATAAGTGATGCTGAGAGAGCAAGGTCACAACCATTGCTCAAGGAGAAAAGTAATGAACCAATTGAGGTCCCTGTTGAATCCTCCTAGTATTTGGTTGTGTTGCTACTGGACAAATGAAATGTAAATTCTTTGGTTCTTTTTCTCTTGATAATGGTTGTTTTTGGGCTCGGTTTTGCACGTACCTCGACTATTTCACCTTTGTACCTGCCACCTCCCATTGGCACATGTACCATATAACTCTG---TCCTCCGAGGCTTAATGTAAATTCTTTGATTCTTATCTCTGTGTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555021" ref_strand="-" ref_description="SGN-E555021 [cTSC-6-C3]">
      <seq>acatataccatatgaaaaatgcagacatgatgtttggaggtattactgttatatctggaatattcggaaccttggctggaggctttgttttggatcgaatgacatccacaatatccaatgcctttaagcttctctcagtggcaacatttcttggagcaatattttgctttgctgccttttgttttaagagtttatatgctttcatccctctttttgcaataggagaactgcttgtatttgcaacacagggccctgtaaactatgtctgtctccattccgtcaatccaggtttgagaccactggctatggcgatgtctactgtttcaatccacatatttggtgatgttccttcgtctcctcttgtgggggttgtccaggatcacattaacaattggagggtcactgctttgatgttgacatcagttctacttatagcggctggaatatggtttataggcatctttcttcacagtgtagatagatccaacgaagatagtgagaatcaaataagtgatgctgagagagcaaggtcacaaccattgctcaaggagaaaagtaatgaaccaattgacgtccctgttgaatcctcctagtatttggttgtgatgctactggacaaatgaaatgtaaattctttggttctttttctccggataatggttgtttttgggtccggttttgcacgtacctcgactatttcacctttgtacctgccacctcccattggcacatgtaccatataactctgtcctcctccgaggcgtaatgtaaattcttttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="102784" stop="106067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103085" g_stop="103198" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="128" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103199" i_stop="103523" i_length="325">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103524" g_stop="103643" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="248" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103644" i_stop="104018" i_length="375">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104019" g_stop="104147" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="377" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104148" i_stop="105233" i_length="1086">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105234" g_stop="105312" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="456" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105313" i_stop="105440" i_length="128">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105441" g_stop="105767" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="783" r_length="327" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E555021" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555021" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103085" e_stop="103198"/>
          <exon e_start="103524" e_stop="103643"/>
          <exon e_start="104019" e_stop="104147"/>
          <exon e_start="105234" e_stop="105312"/>
          <exon e_start="105441" e_stop="105767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGCAGACATGATGTTTGGAGGTATTACTGTTATATCTGGAATATTCGGAACCTTGGCTGGAGGCTTTGTTTTGGATCGAATGACATCCACAATATCCAATGCCTTTAAGGTGGGGTACTTTGTTCCTAAGATTCTGTTGAATCTCTAGAAATATTTCTCATTTAATCCAGTGTCCAAAGTGAAGATCATTCATTCTTTGCTAAATACAAAACAAACAAGACTTTCTCAATCTGGGTTAAAATTATCAAAGAAGAACTGATTCTTTTGACTTGTATAACTCTTGCACCCTGTTTCGATTTTCTCAAATTCGCCATTTTTAGAAGGATGATCTATGATGTTCATTTTTTATGTTAATGACATATCTTCTCTTCTGGTGTTTTCATTTGAATCCTTCAAAACCCTGCTGCTAATGATGTCACTATTTTGTAATGCAGCTTCTCTCAGTGGCAACATTTCTTGGAGCAATATTTTGCTTTGCTGCCTTTTGTTTTAAGAGTTTATATGCTTTCATCCCTCTTTTTGCAATAGGAGAACTGCTTGTATTTGCAACACAGGTAATTCTATTAATCTAATCCAGTACTCTTTATTGTAAATTTGTCTACTTCTTTGTACACTAGTTCAATGGAGTTTAATATTTGGAAATGCTTTCTGCAAAATGGTTTTTCTCTAATTTCCTCGGTTCCTTTACTTTATATTATAAATAAATATGATGAAGTGTGTCATTTGTTTAGGCAAAAAAACGTTTTTTAACTAACAAAATTGTTTGGATGACTGATCATATCCCCCATACATCCTTTTTTCCGTTCTTTTGAAGTTCTCAAAAGTGTAATTGGCTTTCACTTAGTTAAGATGTATAATTAGTTGTATTTTAGGGTTGATACTTTTTGTTTCGAGCTTTACTTCATCTTACATTAAAGCATCTGATGCAGGGCCCTGTAAACTATGTCTGTCTCCATTCCGTCAATCCAGGTTTGAGACCACTGGCTATGGCGATGTCTACTGTTTCAATCCACATATTTGGTGATGTTCCTTCGTCTCCTCTTGTGGGGGTTGTCCAGGTTTGAGCTTGCTTGTTGATCTTGTTTTGCAACTTATATCTTTCTCTCTTTCAAGAGTTCTTTTTTCCGTTTCAAAAGATAGACACATTTTTATGAGCTTTGCTAATGTTATACATGGCTTTAATACTTGTTAGCGTTGTCCCCATTTTTTATTTTCCTTAATGTTCCTAACCTCATCATTCAGATCCTCTGTTTTGTTTACCTTTTTCGGGCTATTCCTCTCAATTTGATTCTTGAGCGTACTCTTCTCCATTTCTTTCTCCGGCAAACTACTTCCCATTCCTTTCTCCGATTAAGCCCCCCAACCCCAAAACCCCTTTTTGTTTTTTTCCCTTTTCTCTTGTATATACACACATTGCAATCAAGCCTTACCATTTGTTATGGTGTGCCGGCTATCTGCAGCATTGTCACTGAAGTTTTACTCCTCCCTGCGGGTGGAGGCTATTCGTACCTCCGACGGCAGAGAACAGTGAAAGCTTCATTCAGCCCGCTTTCATTGTTTATCGAACATTCTAGTTTTGAAGTTCTGTGAGGACACAATATTTTGTAGAGGGAAGAGGCCTAGTGATTGTTCCCATTGTGCTGTTTCGAATCATCAGTTGGTGGTTGCCTCTTTGGCAGATAATGAATAACGCTTGAAATAAGGAAAAAAATGAATTTGCTTTTGTTCCCTCTTCACATAGCAGTGAATAAAATAGCATACAATCTGAAATATGGTGGCTTTGATAAATAGGGTACCATGTGTTACAAGTGCAAGATTGTTCTCTTTCTCCCATGATAATCTTCTTTTCTCCTCCAATAGTCACAAGAATGTGGAAGTGCAAGGCTGCTTTTGTTTGAACAAAAAATTAGTAGTTGCACTTATAGAGTTCCTTGTCAAAAGAAAATATTCGGTTCAACTTATAGTACATGAAAGACATGAAGTCTGTAGGATGATTTCCAATAACTAGTTTAACCGTTAAATTGATTCTGGAAAAGGTCAATTATTGGTGTAGCAGTAGTAAAAGTTATAATTGCAACTATGTCGTTCATTTTATGGTTCTTGATAACATTGATCAATATGCTCCTATGTTTTCTCTTGTACAGGATCACATTAACAATTGGAGGGTCACTGCTTTGATGTTGACATCAGTTCTACTTATAGCGGCTGGAATATGGTTTATAGGTATATTGTACTCATTGAACGCCTCAGAATCCAAATCTTTATCCTTGAAATGAGTCCGACTTGATGTCATTGGCAATACATTTAGGGTGGTTATTAATGATATTTTTTAATGCACTTTTTATGTGTAGGCATCTTTCTTCACAGTGTAGATAGATCCAACGAAGATAGTGAGAATCAAATAAGTGATGCTGAGAGAGCAAGGTCACAACCATTGCTCAAGGAGAAAAGTAATGAACCAATTGACGTCCCTGTTGAATCCTCCTAGTATTTGGTTGTGATGCTACTGGACAAATGAAATGTAAATTCTTTGGTTCTTTTTCTCCGGATAATGGTTGTTTTTGGGTCCGGTTTTGCACGTACCTCGACTATTTCACCTTTGTACCTGCCACCTCCCATTGGCACATGTACCATATAACTCTGTCCTCCTCCGAGGCTTAATGTAAATTCTTTGATTC</genome_strand>
        <mrna_strand>AAAAATGCAGACATGATGTTTGGAGGTATTACTGTTATATCTGGAATATTCGGAACCTTGGCTGGAGGCTTTGTTTTGGATCGAATGACATCCACAATATCCAATGCCTTTAAG.....................................................................................................................................................................................................................................................................................................................................CTTCTCTCAGTGGCAACATTTCTTGGAGCAATATTTTGCTTTGCTGCCTTTTGTTTTAAGAGTTTATATGCTTTCATCCCTCTTTTTGCAATAGGAGAACTGCTTGTATTTGCAACACAG.......................................................................................................................................................................................................................................................................................................................................................................................GGCCCTGTAAACTATGTCTGTCTCCATTCCGTCAATCCAGGTTTGAGACCACTGGCTATGGCGATGTCTACTGTTTCAATCCACATATTTGGTGATGTTCCTTCGTCTCCTCTTGTGGGGGTTGTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACATTAACAATTGGAGGGTCACTGCTTTGATGTTGACATCAGTTCTACTTATAGCGGCTGGAATATGGTTTATAG................................................................................................................................GCATCTTTCTTCACAGTGTAGATAGATCCAACGAAGATAGTGAGAATCAAATAAGTGATGCTGAGAGAGCAAGGTCACAACCATTGCTCAAGGAGAAAAGTAATGAACCAATTGACGTCCCTGTTGAATCCTCCTAGTATTTGGTTGTGATGCTACTGGACAAATGAAATGTAAATTCTTTGGTTCTTTTTCTCCGGATAATGGTTGTTTTTGGGTCCGGTTTTGCACGTACCTCGACTATTTCACCTTTGTACCTGCCACCTCCCATTGGCACATGTACCATATAACTCTGTCCTCCTCCGAGGCGTAATGTAAATTCTTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555147" ref_strand="-" ref_description="SGN-E555147 [cTSC-6-J1]">
      <seq>gatgttgggaggtatttactgttacatctggaatattcggaaccttggctggaggctttgttttggatcgaatgacatccccaatatccaatgcctttaagcttctctcagtggcaacatttcttggagcaatattttgctttgctgccttctgttctaagagtttatatgctttcatccctctttttgcaataggagaactgcttgtatttgcaacacagggccctgtaaactatgtctgtctccattccgtcaatccaggtttgagaccactggctatggcgatgtctactgtttcaatccacatatttggtgatgttccttcgtctcctcttgtgggggttgtccaggatcacattaacaattggagggtcactgctttgatgttgacatcagttctacttatagcggctggaatatggtttataggcatctttcttcacagtgtagatagatccaacgaagatagtgagaatcaaataagtgatgctgagagagcaaggtcacaaccattgctcaaggagaaaagtaatgaaccaattgacgtccctgttgaatcctcctagtatttggttgtgatgctactggacaaatgaaatgtaaattctttggttctttttctccggataatggttgtttttgggtccggttttgcaggtacctcgactatttcacctttgtacctactacgtcccattggcacatgtaccatataactctgtcttcctccgaggcttaatgtaaattcttttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="102799" stop="106067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103099" g_stop="103198" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103199" i_stop="103523" i_length="325">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103524" g_stop="103643" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="221" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103644" i_stop="104018" i_length="375">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104019" g_stop="104147" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="350" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104148" i_stop="105233" i_length="1086">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105234" g_stop="105312" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="429" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105313" i_stop="105440" i_length="128">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105441" g_stop="105767" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="756" r_length="327" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E555147" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555147" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103099" e_stop="103198"/>
          <exon e_start="103524" e_stop="103643"/>
          <exon e_start="104019" e_stop="104147"/>
          <exon e_start="105234" e_stop="105312"/>
          <exon e_start="105441" e_stop="105767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTTGGAGGTA-TTACTGTTATATCTGGAATATTCGGAACCTTGGCTGGAGGCTTTGTTTTGGATCGAATGACATCCACAATATCCAATGCCTTTAAGGTGGGGTACTTTGTTCCTAAGATTCTGTTGAATCTCTAGAAATATTTCTCATTTAATCCAGTGTCCAAAGTGAAGATCATTCATTCTTTGCTAAATACAAAACAAACAAGACTTTCTCAATCTGGGTTAAAATTATCAAAGAAGAACTGATTCTTTTGACTTGTATAACTCTTGCACCCTGTTTCGATTTTCTCAAATTCGCCATTTTTAGAAGGATGATCTATGATGTTCATTTTTTATGTTAATGACATATCTTCTCTTCTGGTGTTTTCATTTGAATCCTTCAAAACCCTGCTGCTAATGATGTCACTATTTTGTAATGCAGCTTCTCTCAGTGGCAACATTTCTTGGAGCAATATTTTGCTTTGCTGCCTTTTGTTTTAAGAGTTTATATGCTTTCATCCCTCTTTTTGCAATAGGAGAACTGCTTGTATTTGCAACACAGGTAATTCTATTAATCTAATCCAGTACTCTTTATTGTAAATTTGTCTACTTCTTTGTACACTAGTTCAATGGAGTTTAATATTTGGAAATGCTTTCTGCAAAATGGTTTTTCTCTAATTTCCTCGGTTCCTTTACTTTATATTATAAATAAATATGATGAAGTGTGTCATTTGTTTAGGCAAAAAAACGTTTTTTAACTAACAAAATTGTTTGGATGACTGATCATATCCCCCATACATCCTTTTTTCCGTTCTTTTGAAGTTCTCAAAAGTGTAATTGGCTTTCACTTAGTTAAGATGTATAATTAGTTGTATTTTAGGGTTGATACTTTTTGTTTCGAGCTTTACTTCATCTTACATTAAAGCATCTGATGCAGGGCCCTGTAAACTATGTCTGTCTCCATTCCGTCAATCCAGGTTTGAGACCACTGGCTATGGCGATGTCTACTGTTTCAATCCACATATTTGGTGATGTTCCTTCGTCTCCTCTTGTGGGGGTTGTCCAGGTTTGAGCTTGCTTGTTGATCTTGTTTTGCAACTTATATCTTTCTCTCTTTCAAGAGTTCTTTTTTCCGTTTCAAAAGATAGACACATTTTTATGAGCTTTGCTAATGTTATACATGGCTTTAATACTTGTTAGCGTTGTCCCCATTTTTTATTTTCCTTAATGTTCCTAACCTCATCATTCAGATCCTCTGTTTTGTTTACCTTTTTCGGGCTATTCCTCTCAATTTGATTCTTGAGCGTACTCTTCTCCATTTCTTTCTCCGGCAAACTACTTCCCATTCCTTTCTCCGATTAAGCCCCCCAACCCCAAAACCCCTTTTTGTTTTTTTCCCTTTTCTCTTGTATATACACACATTGCAATCAAGCCTTACCATTTGTTATGGTGTGCCGGCTATCTGCAGCATTGTCACTGAAGTTTTACTCCTCCCTGCGGGTGGAGGCTATTCGTACCTCCGACGGCAGAGAACAGTGAAAGCTTCATTCAGCCCGCTTTCATTGTTTATCGAACATTCTAGTTTTGAAGTTCTGTGAGGACACAATATTTTGTAGAGGGAAGAGGCCTAGTGATTGTTCCCATTGTGCTGTTTCGAATCATCAGTTGGTGGTTGCCTCTTTGGCAGATAATGAATAACGCTTGAAATAAGGAAAAAAATGAATTTGCTTTTGTTCCCTCTTCACATAGCAGTGAATAAAATAGCATACAATCTGAAATATGGTGGCTTTGATAAATAGGGTACCATGTGTTACAAGTGCAAGATTGTTCTCTTTCTCCCATGATAATCTTCTTTTCTCCTCCAATAGTCACAAGAATGTGGAAGTGCAAGGCTGCTTTTGTTTGAACAAAAAATTAGTAGTTGCACTTATAGAGTTCCTTGTCAAAAGAAAATATTCGGTTCAACTTATAGTACATGAAAGACATGAAGTCTGTAGGATGATTTCCAATAACTAGTTTAACCGTTAAATTGATTCTGGAAAAGGTCAATTATTGGTGTAGCAGTAGTAAAAGTTATAATTGCAACTATGTCGTTCATTTTATGGTTCTTGATAACATTGATCAATATGCTCCTATGTTTTCTCTTGTACAGGATCACATTAACAATTGGAGGGTCACTGCTTTGATGTTGACATCAGTTCTACTTATAGCGGCTGGAATATGGTTTATAGGTATATTGTACTCATTGAACGCCTCAGAATCCAAATCTTTATCCTTGAAATGAGTCCGACTTGATGTCATTGGCAATACATTTAGGGTGGTTATTAATGATATTTTTTAATGCACTTTTTATGTGTAGGCATCTTTCTTCACAGTGTAGATAGATCCAACGAAGATAGTGAGAATCAAATAAGTGATGCTGAGAGAGCAAGGTCACAACCATTGCTCAAGGAGAAAAGTAATGAACCAATTGACGTCCCTGTTGAATCCTCCTAGTATTTGGTTGTGATGCTACTGGACAAATGAAATGTAAATTCTTTGGTTCTTTTTCTCCGGATAATGGTTGTTTTTGGGTCCGGTTTTGCACGTACCTCGACTATTTCACCTTTGTACCTGCCACCTCCCATTGGCACATGTACCATATAACTCTGTCCTCCTCCGAGGCTTAATGTAAATTCTTTGATTC</genome_strand>
        <mrna_strand>GATGTTGGGAGGTATTTACTGTTACATCTGGAATATTCGGAACCTTGGCTGGAGGCTTTGTTTTGGATCGAATGACATCCCCAATATCCAATGCCTTTAAG.....................................................................................................................................................................................................................................................................................................................................CTTCTCTCAGTGGCAACATTTCTTGGAGCAATATTTTGCTTTGCTGCCTTCTGTTCTAAGAGTTTATATGCTTTCATCCCTCTTTTTGCAATAGGAGAACTGCTTGTATTTGCAACACAG.......................................................................................................................................................................................................................................................................................................................................................................................GGCCCTGTAAACTATGTCTGTCTCCATTCCGTCAATCCAGGTTTGAGACCACTGGCTATGGCGATGTCTACTGTTTCAATCCACATATTTGGTGATGTTCCTTCGTCTCCTCTTGTGGGGGTTGTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACATTAACAATTGGAGGGTCACTGCTTTGATGTTGACATCAGTTCTACTTATAGCGGCTGGAATATGGTTTATAG................................................................................................................................GCATCTTTCTTCACAGTGTAGATAGATCCAACGAAGATAGTGAGAATCAAATAAGTGATGCTGAGAGAGCAAGGTCACAACCATTGCTCAAGGAGAAAAGTAATGAACCAATTGACGTCCCTGTTGAATCCTCCTAGTATTTGGTTGTGATGCTACTGGACAAATGAAATGTAAATTCTTTGGTTCTTTTTCTCCGGATAATGGTTGTTTTTGGGTCCGGTTTTGCAGGTACCTCGACTATTTCACCTTTGTACCTACTACGTCCCATTGGCACATGTACCATATAACTCTGTCTTCCTCCGAGGCTTAATGTAAATTCTTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620766" ref_strand="+" ref_description="SGN-E620766 [71471]">
      <seq>tctttattcacagcgttgatagatccaacgaagatagtgagaatcaaataagtgatgccgagagagcaaggtcacaaccattgctcaaggagaaaagtaatgaaccaattgaggtccctgttgaatcctcctagtatttggtcgtgtagctactggacaaacgaaatgtaaattctttggttctttttctcttgataatggttgtttttgggcccggttttgcacgtacctcgactatttcacctttgtacctgccacctcccattggcacatgtaccatataactctgtcctccgaggcttaatgtaaattctttgattcttatctttgtgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="105144" stop="106085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105444" g_stop="105794" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E620766" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105444" e_stop="105794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTTCACAGTGTAGATAGATCCAACGAAGATAGTGAGAATCAAATAAGTGATGCTGAGAGAGCAAGGTCACAACCATTGCTCAAGGAGAAAAGTAATGAACCAATTGACGTCCCTGTTGAATCCTCCTAGTATTTGGTTGTGATGCTACTGGACAAATGAAATGTAAATTCTTTGGTTCTTTTTCTCCGGATAATGGTTGTTTTTGGGTCCGGTTTTGCACGTACCTCGACTATTTCACCTTTGTACCTGCCACCTCCCATTGGCACATGTACCATATAACTCTGTCCTCCTCCGAGGCTTAATGTAAATTCTTTGATTCTTATCTCTGTGTAAATAATGTTGCAAA</genome_strand>
        <mrna_strand>TCTTTATTCACAGCGTTGATAGATCCAACGAAGATAGTGAGAATCAAATAAGTGATGCCGAGAGAGCAAGGTCACAACCATTGCTCAAGGAGAAAAGTAATGAACCAATTGAGGTCCCTGTTGAATCCTCCTAGTATTTGGTCGTGTAGCTACTGGACAAACGAAATGTAAATTCTTTGGTTCTTTTTCTCTTGATAATGGTTGTTTTTGGGCCCGGTTTTGCACGTACCTCGACTATTTCACCTTTGTACCTGCCACCTCCCATTGGCACATGTACCATATAACTCTG---TCCTCCGAGGCTTAATGTAAATTCTTTGATTCTTATCTTTGTGTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737620" ref_strand="+" ref_description="SGN-E737620 [LC10CD02]">
      <seq>gtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtatagtgattaatagagctcttaagcctcctgcttgtaacctaaactggacatggaaaatgtccccatgattgtactctttcgtctggggtggaagccaattcatattttaaagaaagacttctttgttataagctactgtttttcatttatcatcaataattttgttcatccagtagcatttgtaagttatccagaacgaaaacaagtgtattgacatatgatttaatcttcattctccagatgcatcaattgaaaattnnnaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="108562" stop="105840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108410" g_stop="108396" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="197" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="296" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106487" g_stop="106136" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="648" r_length="352" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="668"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E737620" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108410" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTAGAA</genome_strand>
        <mrna_strand>GTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTNNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740406" ref_strand="+" ref_description="SGN-E740406 [LC21BB05]">
      <seq>ctgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtatagtgattaatagagctcttaagcctcctgcttgtaacctaaactggacatggaaaatgtccccatgattgtactctttcgtctggggtggaagccaattcatattttaaagaaagacttctttgttataagctactgtttttcatttatcatcaataattttgttcatccagtagcatttgtaagttatccagaacgaaaacaagtgtattgacatatgatttaatcttcattctccagatgcatcaattgaaaattnnnaaaaaaaaaaaaaaaaaaaaaaaaaannccccggggggggggccgggaccccatttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="108562" stop="105840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108410" g_stop="108396" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="197" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="296" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106487" g_stop="106136" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="648" r_length="352" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="674"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E740406" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108410" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTAGAA</genome_strand>
        <mrna_strand>CTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTNNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736105" ref_strand="+" ref_description="SGN-E736105 [LC04BE07]">
      <seq>gtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtatagtgattaatagagctcttaagcctcctgcttgtaacctaaactggacatggaaaatgtccccatgattgtactctttcgtctggggtggaagccaattcatattttaaagaaagacttctttgttataagctactgtttttcatttatcatcaataattttgttcatccagtagcatttgtaagttatccagaacgaaaacaagtgtattgacatatgatttaatcttcattctccagatgcatcaattgaaaattannaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="108562" stop="105839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108410" g_stop="108396" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="197" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="296" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106487" g_stop="106136" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="648" r_length="352" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="668"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E736105" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108410" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTAGAA</genome_strand>
        <mrna_strand>GTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTANNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372799" ref_strand="+" ref_description="SGN-E372799 [TUS-32-P20](-)">
      <seq>caaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtatagtgattaatagagctcttaagcctcctgcttgtaacctaaactggacatggaaaatgtccccatgattgtactctttcgtctggggtggaagccaattcatattttaaagaaagacttctttgttataagctactgtttttcatttatcatcaataattttgttcatccagtagcatttgtaagttatccagaacgaaaacaagtgtattgacatatgatttaatcttcattctccagatgcatcaattgaaaattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="108762" stop="105836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108462" g_stop="108396" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="249" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="348" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106487" g_stop="106139" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="697" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="698" polyA_stop="708"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E372799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108462" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTA</genome_strand>
        <mrna_strand>CAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221766" ref_strand="+" ref_description="SGN-E221766 [cLEL-10-G9](-)">
      <seq>gatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtatagtgattaatagagctcttaagcctcctgcttgtaacctaaactggacatggaaaatgtccccatgattgtactctttcgtctggggtggaagccaattcatattttaaagaaagacttctttgttataagctactgtttttcatttatcatcaataattttgttcatccagtagcatttgtaagttatccagaacgaaaacaagtgtattgacatatgatttaatcttcattctccagatgcatcaattgaaaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="108409" stop="105836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108109" g_stop="108080" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="129" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106487" g_stop="106139" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="478" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="494"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E221766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108109" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTA</genome_strand>
        <mrna_strand>GATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222650" ref_strand="+" ref_description="SGN-E222650 [cLEL-16-N9](-)">
      <seq>ggcacgagggaaaacctgctaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtatagtgattaatagagctcttaagcctcctgcttgtaacctaaactggacatggaaaatgtccccatgattgtactctttcgtctggggtggaagccaattcatattttaaagaaagacttctttgttataagctactgtttttcatttatcatcaataattttgttcatccagtagcatttgtaagttatccagaacgaaaacaagtgtattgacatatgatttaatcttcattctccagatgcatcaattgaaaattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="106953" stop="105836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106658" g_stop="106603" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106487" g_stop="106139" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="405" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="422"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E222650" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106658" e_stop="106603"/>
          <exon e_start="106487" e_stop="106139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTA</genome_strand>
        <mrna_strand>GGCACGAGGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222404" ref_strand="+" ref_description="SGN-E222404 [cLEL-16-N9](-)">
      <seq>aataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtatagtgattaatagagctcttaagcctcctgcttgtaacctaaactggacatggaaaatgtccccatgattgtactctttcgtctggggtggaagccaattcatattttaaagaaagacttctttgttataagctactgtttttcatttatcatcaataattttgttcatccagtagcatttgtaagttatccagaacgaaaacaagtgtattgacatatgatttaatcttcattctccagatgcatcaattgaaaattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="106938" stop="105836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106638" g_stop="106603" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106487" g_stop="106139" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="385" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="402"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E222404" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106638" e_stop="106603"/>
          <exon e_start="106487" e_stop="106139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTA</genome_strand>
        <mrna_strand>AATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403907" ref_strand="+" ref_description="SGN-E403907 [PPC-12-I3]">
      <seq>cttttgcgaacaccgaagttgagggggcatttggtgataatgaccctgttgatgttgttgagattggggaaagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgccaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtataaatgctgattaattgagcttaagccgctgctagttttcctgcttgtaacctaaactggacatggaaattgtccccatgattgtactctttcttctgaggtggaagccaattcatatttttaagacgacttgttgttataagctactgtttttcattttatcatcaataattttgttcatccagtagcgtttgtaagttatccagaacgaaaacaggtgtattgatatatgaattnaatctcatttttccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="108743" stop="105857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108443" g_stop="108396" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="230" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="329" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106487" g_stop="106150" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="680" r_length="351" r_score="0.831"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E403907" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108443" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTAT--A-G-TGATTAA-T-AG----AG-CTCT--TAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCA-TTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATG-ATTTAATCTTCATTCTCCAGATGCATCA</genome_strand>
        <mrna_strand>CTTTTGCGAACACCGAAGTTGAGGGGGCATTTGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGAAAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCCAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAAATGCTGATTAATTGAGCTTAAGCCGCTGCTAGTTTTCCTGCTTGTAACCTAAACTGGACATGGAAATTGTCCCCATGATTGTACTCTTTCTTCTGAGGTGGAAGCCAATTCATATTTTTAAG-ACGACTT-GTTGTTATAAGCTACTGTTTTTCATTTTATCATCAATAATTTTGTTCATCCAGTAGCGTTTGTAAGTTATCCAGAACGAAAACAGGTGTATTGATATATGAATTNAATCTCATTTTTCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374287" ref_strand="+" ref_description="SGN-E374287 [TUS-33-H8](-)">
      <seq>aggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattaatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtatagtgattaatagagctcttaagcctcctgcttgtaacctaaactggacatggaaaatgtccccatgattgtactctttcgtctggggtggaagccaattcatattttaaagaaagacttctttgttataagctactgtttttcatttatcatcaataattttgttcatccagtagcatttgtaagttatccagaacgaaaacaagtgtattgacatatgatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="108533" stop="105872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108233" g_stop="108080" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="253" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106487" g_stop="106164" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="577" r_length="324" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E374287" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108233" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATT</genome_strand>
        <mrna_strand>AGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTAATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692135" ref_strand="+" ref_description="SGN-E692135 [LH_Ea07O21]">
      <seq>taagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttccgcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcatttggtgataatgaccctgttgatgttgttgagattggggaaagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagacgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtataaatgctgattaatagagagcttaagctggctagttctcctgcctgtaacctaaactggacatggaaattgtccccatgattgtactctttcgtctggggtggaagccaattcatatttttaagatgacttcttgttataagctactgtttttcctttatcatcaataattttgttcatccagtagcgtctgtaagttatccagaacgaaacaggtgtattgaactattgatatatgatttgatcttcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="109317" stop="105873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109018" g_stop="108927" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="193" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="375" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="474" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106487" g_stop="106183" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="789" r_length="315" r_score="0.869"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E692135" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109018" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTAT--A-G-TGATTAATAGAGCTCTTAA----GC-----CTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGAC</genome_strand>
        <mrna_strand>TAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCGCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTTGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGAAAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGACGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAAATGCTGATTAATAGAGAGCTTAAGCTGGCTAGTTCTCCTGCCTGTAACCTAAACTGGACATGGAAATTGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTTAAG-ATGACTTC-TTGTTATAAGCTACTGTTTTTCCTTTATCATCAATAATTTTGTTCATCCAGTAGCGTCTGTAAGTTATCCAGAACG-AAACAGGTGTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293570" ref_strand="-" ref_description="SGN-E293570 [cLET-15-J17](-)">
      <seq>aggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtatagtgattaatagagctcttaagcctcctgcttgtaacctaaactggacatggaaaatgtccccatgattgtactctttcgtctggggtggaagccaattcatattttaaagaaagacttctttgttataagctactgtttttcatttatcatcaataattttgttcatccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="108533" stop="105926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108233" g_stop="108080" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="253" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106487" g_stop="106217" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="524" r_length="271" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E293570" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293570" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108233" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTT</genome_strand>
        <mrna_strand>AGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293569" ref_strand="+" ref_description="SGN-E293569 [cLET-15-J17]">
      <seq>aggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtatagtgattaatagagctcttaagcctcctgcttgtaacctaaactggacatggaaaatgtccccatgattgtactctttcgtctggggtggaagccaattcatattttaaagaaagacttctttgttataagctactgtttttcatttatcatcaataattttgttcatccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="108533" stop="105926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108233" g_stop="108080" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="253" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106487" g_stop="106217" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="524" r_length="271" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E293569" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108233" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTT</genome_strand>
        <mrna_strand>AGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734308" ref_strand="+" ref_description="SGN-E734308 [LB12BC11]">
      <seq>ctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtatagtgattaatagagctcttaagcctcctgcttgtaacctaaactggacatggaaaatgtccccatgattgtactctttcgtctggggtggaagccaattcatattttaaagaaagacttncttgntataagctactgtttttcatttatcatcaataattttgttcatccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="109868" stop="105926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109568" g_stop="109527" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="203" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="304" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="486" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="585" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106487" g_stop="106218" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="855" r_length="270" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E734308" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109568" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATT</genome_strand>
        <mrna_strand>CTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTNCTTGNTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734122" ref_strand="+" ref_description="SGN-E734122 [LB11DD04]">
      <seq>ctatattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtatagtgattaatagagctcttaagcctcctgcttgtaacctaaactggacatggaaaatgtccccatgattgtactctttcgtctggggtggaagccaattcatattttaaagaaagacttctttgttataagctactgtttttcatttatcatcaataattttgttcatccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="109868" stop="105926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109568" g_stop="109527" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="203" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="304" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="486" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="585" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106487" g_stop="106219" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="854" r_length="269" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E734122" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109568" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCAT</genome_strand>
        <mrna_strand>CTATATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222179" ref_strand="+" ref_description="SGN-E222179 [cLEL-16-E18](-)">
      <seq>gttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttaaagactataagatacctgatggaaaacctgctaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtatagtgattaatagagctcttaagcctcctgcttgtaacctaaactggacatggaaaatgtccccatgattgtactctttcgtctggggtggaagccaattcatattttaaagaaagacttctttgttataagctactgtttttcatttatcatcaataattttgttcatccagtaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="108415" stop="105923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108115" g_stop="108080" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="135" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106487" g_stop="106223" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="400" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="401" polyA_stop="424"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E222179" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108115" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTA</genome_strand>
        <mrna_strand>GTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAAAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417140" ref_strand="-" ref_description="SGN-E417140 [STM-24-F20]">
      <seq>gaatcaagtgcaaagatggaagttgctacagatgagcaacacacttccaattaaacaagacacgaaagaaggggaaacttcgatactatccnatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaacaccgaagttgagggggcatttggtgataatgaccctgttgatgttgttgagattggggaaagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgccaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtataaatgctgattaattgagcttaagccgctgctagttttcctgcttgtaacctaaactggacatggaaattgtccccatgattgtactctttcttctgaggtggaagccaattcatatttttaagacgacttgttgttataagctactgtttttcattttatcatcaataattttgttcaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="109315" stop="105930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109015" g_stop="108927" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.85"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="193" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="375" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="474" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106487" g_stop="106231" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="743" r_length="269" r_score="0.840"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="744" polyA_stop="762"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E417140" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417140" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="109015" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACAC-TCCTATTAAACAAGACAC-AAAGAAGGGGAAACTTCGATACTATCC-GTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTAT--A-G-TGATTAA-T-AG----AG-CTCT--TAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCA-TTTATCATCAATAATTTTGTTC</genome_strand>
        <mrna_strand>GAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTTCCAATTAAACAAGACACGAAAGAAGGGGAAACTTCGATACTATCCN..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAACACCGAAGTTGAGGGGGCATTTGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGAAAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCCAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAAATGCTGATTAATTGAGCTTAAGCCGCTGCTAGTTTTCCTGCTTGTAACCTAAACTGGACATGGAAATTGTCCCCATGATTGTACTCTTTCTTCTGAGGTGGAAGCCAATTCATATTTTTAAG-ACGACTT-GTTGTTATAAGCTACTGTTTTTCATTTTATCATCAATAATTTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296097" ref_strand="+" ref_description="SGN-E296097 [cLET-24-C22]">
      <seq>accctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtatagtgattaatagagctcttaagcctcctgcttgtaacctaaactggacatggaaaatgtccccatgattgtactctttcgtctggggtggaagccaattcatattttaaagaaagacttctttgttataagctactgtttttcatttatcatcaataattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="108562" stop="105934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108401" g_stop="108396" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="188" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="287" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106487" g_stop="106234" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="541" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E296097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108401" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTG</genome_strand>
        <mrna_strand>ACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295990" ref_strand="+" ref_description="SGN-E295990 [cLET-27-E20]">
      <seq>cgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattaccggaacccatggaattttgggcaaagctggtcaagagatcaatcgctgctggtgagctttcacttgtatagtgattaatagagctcttaagcctcctgcttgtaacctaaactggacatggaaaatgtccccatgattgtactctttcgtctggggtggaagccaattcatattttaaagaaagacttctttgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="108535" stop="105967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108235" g_stop="108080" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="255" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.059" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106487" g_stop="106261" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="483" r_length="228" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E295990" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108235" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTA-CGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACT</genome_strand>
        <mrna_strand>CGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACCGGAACCCATGGAATTTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576671" ref_strand="+" ref_description="SGN-E576671 [59926]">
      <seq>agcaatggcggcggcaagagtcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaagcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactccaattaaacaagacacgaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaacacggaagttgagggggcatttggtgataatgaccctgttgatgttgttgagattggggaaagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacatttcccgggcactctcacagcaatcaggcattggtttagagactataagatacctgatggaaaacctgccaataggtttgctctttggcacaagccagcaaacaaagaattaacgctcttaagattattacggaaaccaatgaatctgggcaagctggtcagagatcaatcggtgctggtgagctttcacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110067" stop="106100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109767" g_stop="109527" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="402" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="503" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="685" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="785" r_length="100" r_score="0.919"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.059" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106487" g_stop="106400" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="871" r_length="86" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E576671" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109767" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAAC-AAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATT-ACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTG</genome_strand>
        <mrna_strand>AGCAATGGCGGCGGCAAGAGTCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAAGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCAATTAAACAAGACACGAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAACACGGAAGTTGAGGGGGCATTTGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGAAAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTCCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGCATTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCCAATAGGTTTGCTCTTTGGCACAAGCCAGCAAACAAAG...................................................................................................................AATTAACGCTCTTAAGATTATTACGGAAACCAATGAATC-TGGGC-AAGCTGGTC-AGAGATCAATCGGTGCTGGTGAGCTTTCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E593537" ref_strand="+" ref_description="SGN-E593537 [36769]">
      <seq>tgcacatcttatcgctactgattaagattcttacttgttaatatcagtatacatgtaatgataagttttaatgttgttgattatggtactaaaacatagcagtgattccacagagagactagtggtccactttaacctgctgaatgaagttccttagtttcttgctatttctagaaggaagtaaatgctcttgaatgctaacagtactagagaagcaagcctgtttgagaaactgtgttttgagtaatgcccacaacatgatgctgatgtgggttgaaactctggtcttttggtcgcagcatctcagtctaatcatctgagctaagccttttcaattcagttttctattatcgtcctttctgctagcagtagtagtgaattgaatcagtgtgtggattcggttattaggcaagttccttattaatttcctgttaacttgtcaatatagtttgaattaattctgtgaatttttcagggcactctcacagcaatcagggattggtttagagactataagatacctgatggaaaagctgccaataggtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggagaccaatgaatcttgggcaaagctggtcaagagatcaatcgctgctggtgagctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="107477" stop="106105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107178" g_stop="106603" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.059" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106487" g_stop="106405" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="657" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E593537" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107178" e_stop="106603"/>
          <exon e_start="106487" e_stop="106405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACATCTTATCGCTACTGATTAAGATTCTTAC-TGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATT-TTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTC</genome_strand>
        <mrna_strand>TGCACATCTTATCGCTACTGATTAAGATTCTTACTTGTTAATATCAGTATACATGTAATGATAAGTTTTAATGTTGTTGATTATGGTACTAAAACATAGCAGTGATTCCACAGAGAGACTAGTGGTCCACTTTAACCTGCTGAATGAAGTTCCTTAGTTTCTTG-CTAT-TTCTAGAAGGAAGTAAATGCTCTTGAATGCTAACAGTACTAGAGAAGCAAGCCTGTTTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCTGATGTGGGTTGAAACTCTGGTCTTTTGGTCGCAGCATCTCAGTCTAATCATCTGAGCT-AAGCCTTTTCAATTC-AGTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGTGTGGATTCGGTTATTAGGCAAGTTCCTTATTAATTTCCTGTTAACTTGTCAATATAGTTTGAATTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGATTGGTTTAGAGACTATAAGATACCTGATGGAAAAGCTGCCAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAGACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706169" ref_strand="+" ref_description="SGN-E706169 [FA29AH03]">
      <seq>gaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagtaatcagggactggtttagagactataagatacctgatggaaaacctgctaatangtttgctcttggcaacaagccagcaaacaaggattacgctcttaagattattacggaaaccaatgaatcttgggcaaagctggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110086" stop="106133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109786" g_stop="109527" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="421" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="522" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="704" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="803" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106487" g_stop="106433" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="858" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E706169" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109786" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCA</genome_strand>
        <mrna_strand>GAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGTAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATANGTTTGCTCTTGGCAACAAGCCAGCAAACAAG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615278" ref_strand="+" ref_description="SGN-E615278 [65075]">
      <seq>caagagtcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaagcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactccaattaaacaagacacgaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaacaccgaagttgagggggcatttggtgataatgaccctgttgatgttgttgagattgggggaagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcaggcattggtttagaggactataaagatacctgatggaaaacctgccaataggtgtgctcttggcaacaagccagcaaacaggattacgctcttaagattattacggaaaccaatgaatcttgggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110053" stop="106142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109753" g_stop="109527" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="388" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="489" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="671" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="771" r_length="100" r_score="0.909"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.059" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106487" g_stop="106442" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="817" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E615278" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109753" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGA-GACTAT-AAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAA</genome_strand>
        <mrna_strand>CAAGAGTCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAAGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCAATTAAACAAGACACGAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAACACCGAAGTTGAGGGGGCATTTGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGGAAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGCATTGGTTTAGAGGACTATAAAGATACCTGATGGAAAACCTGCCAATAGGTGTGCTCTTGGCAACAAGCCAGCAAAC-AG...................................................................................................................GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727630" ref_strand="+" ref_description="SGN-E727630 [LA15BA11]">
      <seq>ggctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctcttggcaacaagccagcaaaccaggattacgctccttagattatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110116" stop="106279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109818" g_stop="109527" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="453" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="554" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="736" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="835" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.059" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106487" g_stop="106466" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="836" r_stop="857" r_length="22" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E727630" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109818" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATTATTA</genome_strand>
        <mrna_strand>GGCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACCAG...................................................................................................................GATTACGCTCCTTAGATTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573909" ref_strand="+" ref_description="SGN-E573909 [33294]">
      <seq>aatggcggcggcaagagtcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaagcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactccaattaaacaagacacgaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaacaccgaagttgagggggcatttggtgataatgaccctgttgatgttgttgagattgggggaagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccggggcactctcacagcaatcagggattggtttagagactataagatacctgatggaaaacctgccaataggttgctcttggcacaggcagcaacaaggattacgctcttagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110064" stop="106287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109764" g_stop="109527" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="399" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="500" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="682" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106603" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="778" r_length="96" r_score="0.909"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.059" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106487" g_stop="106470" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="795" r_length="17" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E573909" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109764" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106603"/>
          <exon e_start="106487" e_stop="106470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAG-GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAGGTAATTGCTTTCTCAGGAGTTTTTGGTTGAATGTGATGTATTTGAAGATCCTTGTTTCTATTTCCTCTTAGTTCTGGATGGGCGTGCTAATGGTCGTTTTACCTTGCACTATCAGGATTACGCTCTTAAGATT</genome_strand>
        <mrna_strand>AATGGCGGCGGCAAGAGTCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAAGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCAATTAAACAAGACACGAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAACACCGAAGTTGAGGGGGCATTTGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGGAAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCACTCTCACAGCAATCAGGGATTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCCAATAGG-TTGCTCTTGGC-AC-AGGCAGC-AACAAG...................................................................................................................GATTACGCTCTT-AGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477903" ref_strand="+" ref_description="SGN-E477903 [cSTD-2-O11]">
      <seq>cagcaatggcggcggcaagagtcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaaaaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactccaattaaacaagacacgaagaaggggaaacttcgatactatccatataacattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaacaccgaagttgagggggcatttggtgataatgaccctgttgatgttgttgagattggggaaagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgatcgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgccaataggtttgctcttggcaacaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110068" stop="106314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109768" g_stop="109527" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="403" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="504" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="686" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106614" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="774" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E477903" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109768" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGC</genome_strand>
        <mrna_strand>CAGCAATGGCGGCGGCAAGAGTCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAAAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCAATTAAACAAGACACGAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAACATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAACACCGAAGTTGAGGGGGCATTTGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGAAAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATCGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCCAATAGGTTTGCTCTTGGCAACAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724912" ref_strand="+" ref_description="SGN-E724912 [FC25CA12]">
      <seq>ttttgcgaataccgaagttgaaggggcattaggtgataatgcccctgttgatgttgttgagattggggatagccgacgtaaaattggccaggttctgaaggtcaaacctttatctgctctggcaatgattgatgcaaaaaaaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctcttggcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="108742" stop="106317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108442" g_stop="108396" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="230" r_length="183" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106701" g_stop="106617" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="315" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E724912" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108442" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATG-AAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACA</genome_strand>
        <mrna_strand>TTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGCCCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGACGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTATCTGCTCTGGCAATGATTGATGCAAAAAAAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703347" ref_strand="+" ref_description="SGN-E703347 [FA21BA05]">
      <seq>gtggactgtggttgatgttaggcagtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatgggaaaactgctaataggtttgctcttggcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110185" stop="106318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109885" g_stop="109527" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="520" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="621" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="803" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106618" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="887" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E703347" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109885" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAAC</genome_strand>
        <mrna_strand>GTGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGGAAAACTGCTAATAGGTTTGCTCTTGGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700654" ref_strand="+" ref_description="SGN-E700654 [FA13DA09]">
      <seq>gtccatgttaggcagtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttaaagactataagatacctgatgggaaaacctgctaataagtttgctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110175" stop="106324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109875" g_stop="109527" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="510" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="611" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="793" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106624" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="872" r_length="79" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E700654" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109875" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGAT-GGAAAACCTGCTAATAGGTTTGCTCTT</genome_strand>
        <mrna_strand>GTCCATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAAAGACTATAAGATACCTGATGGGAAAACCTGCTAATAAGTTTGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708602" ref_strand="+" ref_description="SGN-E708602 [FA36AH04]">
      <seq>cgcttagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110143" stop="106324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109845" g_stop="109527" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="479" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="580" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="762" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106624" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="840" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E708602" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109845" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTT</genome_strand>
        <mrna_strand>CGC-TTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328940" ref_strand="+" ref_description="SGN-E328940 [cTOC-24-F2]">
      <seq>tcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaangagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacctgctaataggtttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110047" stop="106327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109747" g_stop="109527" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="382" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="483" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="665" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106627" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="740" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E328940" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109747" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCT</genome_strand>
        <mrna_strand>TCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAANGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698077" ref_strand="+" ref_description="SGN-E698077 [FA05AG05]">
      <seq>gctatctttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggttaaaagactataagatacctgatggaaaacctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110138" stop="106338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109838" g_stop="109527" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="474" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="575" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="757" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106638" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="821" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E698077" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109838" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GC-AACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTA</genome_strand>
        <mrna_strand>GCTATCTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTAAAAGACTATAAGATACCTGATGGAAAACCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295292" ref_strand="+" ref_description="SGN-E295292 [cLET-20-N17]">
      <seq>ttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatacctgatggaaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="109853" stop="106342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109553" g_stop="109527" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="188" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="289" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="471" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106642" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="531" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E295292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109553" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCT</genome_strand>
        <mrna_strand>TTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706032" ref_strand="+" ref_description="SGN-E706032 [FA28DC07]">
      <seq>gtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacatttttcggggcactctcacagcaatcagggactggtttaaagactataagatacctgaatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110161" stop="106347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109861" g_stop="109527" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="496" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="597" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="779" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106647" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="836" r_length="57" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E706032" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109861" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAG-GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTG-ATGGAA</genome_strand>
        <mrna_strand>GTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCACTCTCACAGCAATCAGGGACTGGTTTAAAGACTATAAGATACCTGAATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568281" ref_strand="+" ref_description="SGN-E568281 [12539]">
      <seq>tcagcctttgcttcagaaacggaccggtgcaaaagaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactccaattaaacaagacacgaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaacaccgaagttgagggggcatttggtgataatgaccctgttgatgttgttgagattggggaaagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggactggtttagagactataagatactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="109975" stop="106351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109675" g_stop="109527" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="310" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="411" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="593" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106651" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="643" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E568281" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109675" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGAT</genome_strand>
        <mrna_strand>TCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCAATTAAACAAGACACGAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAACACCGAAGTTGAGGGGGCATTTGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGAAAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATA-CTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253803" ref_strand="+" ref_description="SGN-E253803 [cLEG-28-E14]">
      <seq>aaaggtccattacgaatgcccaacaatttcagcctttgcttcagaagcggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagctttacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatcagggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110003" stop="106377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109703" g_stop="109527" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="338" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="439" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="621" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106677" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="646" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E253803" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109703" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACT</genome_strand>
        <mrna_strand>AAAGGTCCATTACGAATGCCCAACAATTTCAGCCTTTGCTTCAGAAGCGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTTACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCAGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729440" ref_strand="+" ref_description="SGN-E729440 [LA21AC09]">
      <seq>ggactgtggttgatgttaggcagtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactctcacagcaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110183" stop="106383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109883" g_stop="109527" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="518" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="619" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="801" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106701" g_stop="106683" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="820" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E729440" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109883" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
          <exon e_start="106701" e_stop="106683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCGGTAAGTTTGAAGTGCAATAAAGCTGCTATCTTTTGTTGACTCTCCTTTCTCTCGCACTGATTATGCTTGCGCAACACATTTATGCATCATTTCTCTATCTCTCGCTTTCTTTGTTGTGCTGTGATATGCCTCTTCGGTTAAAGATAATTATTTATCTCCTTTTCAATTTTCTGTTATTACCTCAGACTTGTCTTGTAAAGTCTTTACGGTTACTTTATCATTTTTAATGAAGAGTTTGGTTAACTTATCATAAGAACCAGCTCACTAGAGCTTGAAGTCTTGATCGTTTCCTAGGAACATCGATAGAAATAACAGAGACTATATGCAAAAAATGAGTGATCTTGATATCTTTTGAAATTAGCTGAATACTTTGTCGGATTGAGAGGAGTTAAAGAAAGTTAGCATTATTCAAGGTTATCTATCCAAAGCTATGGAAAAGCATTAAAGTTGTGATTATAATGGGAGAGAGTAGGCACTGACATGGAGATCCCGATGAGTGGAAGCGGCCGTTATAGGATATTGGCTTCCCTATCAACTATAGTTCCACTACTAAGAAATAGCAGAGGCATGCAAAATACTATATATATATGTGAATCTTGCTTTTGTTTCCCCAACCAGATAGTAACATTGGTATAACTTGCTTCGTGGAGACAAATTTTTTTGTATAAGTAGTGTTCCCATATTCTTTTTAGTCTCATTTTGTTACCTTTGCTATCACATTGTATGAAAAAAAAATCATGCCCATCTAGTAAGTCCTCCTTTAGATTATTGTGAGTTATATGATACCTCTAACTGCTGATAGTCAACTTCCTGTTTGAAGTAACTGTGTTGTCCCTAATCTCACTGTTTGACATGTTGTCGAGATAAACTCTATACTGGAATTTCACTACTCCAGATGTTTGGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCA</genome_strand>
        <mrna_strand>GGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCACAGCAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322860" ref_strand="+" ref_description="SGN-E322860 [cTOB-30-F6]">
      <seq>tcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatangtgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaacattttccgggcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110120" stop="107774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109820" g_stop="109527" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="455" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="556" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="738" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E322860" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109820" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG</genome_strand>
        <mrna_strand>TCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATANGTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328965" ref_strand="+" ref_description="SGN-E328965 [cTOC-24-N2]">
      <seq>ttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgntaatgatgttgatgatgtggaaaaacattttccgggcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110118" stop="107774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109818" g_stop="109527" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="453" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="554" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108080" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="736" r_length="182" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E328965" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109818" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG</genome_strand>
        <mrna_strand>TTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGNTAATGATGTTGATGATGTGGAAAAACATTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253882" ref_strand="+" ref_description="SGN-E253882 [cLEG-28-A20]">
      <seq>aaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110003" stop="107787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109703" g_stop="109527" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="338" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="439" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108087" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="614" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E253882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109703" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACA</genome_strand>
        <mrna_strand>AAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400194" ref_strand="+" ref_description="SGN-E400194 [cSTC-5-F7]">
      <seq>gcggctgcaagagtcatggtatcaaccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactccaattaaacaagacacgaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaacaccgaagttgagggggcatttggtgataatgaccctgttgatgttgttgagattggggaaagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110060" stop="107790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109760" g_stop="109527" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="395" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="496" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108090" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="668" r_length="172" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E400194" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109760" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAA</genome_strand>
        <mrna_strand>GCGGCTGCAAGAGTCATGGTATCAACCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCAATTAAACAAGACACGAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAACACCGAAGTTGAGGGGGCATTTGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGAAAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451084" ref_strand="+" ref_description="SGN-E451084 [cSTS-11-O2]">
      <seq>cagcaatggcggctgcaagagtcatggtatcaaccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactccaattaaacaagacacgaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaacaccgaagttgagggggcatttggtgataatgaccctgttgatgttgttgagattggngaaagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatgatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110068" stop="107795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109768" g_stop="109527" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="403" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="504" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108095" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="671" r_length="167" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E451084" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109768" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTG</genome_strand>
        <mrna_strand>CAGCAATGGCGGCTGCAAGAGTCATGGTATCAACCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCAATTAAACAAGACACGAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAACACCGAAGTTGAGGGGGCATTTGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGNGAAAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258603" ref_strand="+" ref_description="SGN-E258603 [cLEG-47-N4]">
      <seq>cgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaactttgactggaaatagttgctatttcactagatgantcaagagcttcacttgttaatgatgttgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110073" stop="107798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109773" g_stop="109527" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="408" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="509" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108098" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="673" r_length="164" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E258603" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109773" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAAC-TTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGAT</genome_strand>
        <mrna_strand>CGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTTGACTGG-AAATAGTTGCTATTTCACTAGATGANTCAAGAGCTTCACTTGTTAATGATGTTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461707" ref_strand="+" ref_description="SGN-E461707 [cPRO-9-G16]">
      <seq>caacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactccaattaaacaagacacgaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaacaccgaagttgagggggcatttggtgataatgaccctgttgatgttgttgagattggggaaagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatgatgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110031" stop="107800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109731" g_stop="109527" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="366" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="467" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108100" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="629" r_length="162" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E461707" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109731" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATG</genome_strand>
        <mrna_strand>CAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCAATTAAACAAGACACGAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAACACCGAAGTTGAGGGGGCATTTGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGAAAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315593" ref_strand="+" ref_description="SGN-E315593 [cTOA-22-M24]">
      <seq>caactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaagtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110137" stop="107809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109837" g_stop="109527" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="472" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="573" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108109" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="726" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E315593" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109837" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATG</genome_strand>
        <mrna_strand>CAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAAGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262604" ref_strand="+" ref_description="SGN-E262604 [cLEG-63-H7]">
      <seq>aaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcacttgttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110003" stop="107810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109703" g_stop="109527" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="338" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="439" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108110" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="591" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E262604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109703" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAAT</genome_strand>
        <mrna_strand>AAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461948" ref_strand="+" ref_description="SGN-E461948 [cPRO-10-I5]">
      <seq>gcaactttcactgttttctcttctccattatatctcttgccttttgggactgaacacttgccagcgaaacagcaatggcggctgcaagagtcatggtatcaaccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactccaattaaacaagacacgaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaacaccgaagttgagggggcatttggtgataatgaccctgttgatgttgttgagattggggaaaagccgagtaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatccaagagcttcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110138" stop="107816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109838" g_stop="109527" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="472" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="573" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108116" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="718" r_length="145" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E461948" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109838" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGG-ATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTT</genome_strand>
        <mrna_strand>GCAACTTTCACTGTTTTCTCTTCTCC-ATTATATCTCTTGCCTTTTGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCTGCAAGAGTCATGGTATCAACCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCAATTAAACAAGACACGAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAACACCGAAGTTGAGGGGGCATTTGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGAAAAGCCGA-GT-AAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728013" ref_strand="+" ref_description="SGN-E728013 [LA16BG02]">
      <seq>ctcctataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactnggaaatagttgctatttcactagatgatccaagagcttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110116" stop="107818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109816" g_stop="109527" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="451" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="552" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108118" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="696" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E728013" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109816" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCAC</genome_strand>
        <mrna_strand>CTCCTATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTNGGAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327913" ref_strand="+" ref_description="SGN-E327913 [cTOC-22-K16]">
      <seq>ttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgangtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaactgactggaaaatagtgctatttcactagatgatccaagagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110118" stop="107821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109818" g_stop="109527" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="453" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="554" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108121" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="693" r_length="139" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E327913" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109818" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTT</genome_strand>
        <mrna_strand>TTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGANGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAAC-TGACTGGAAAATAG-TGCTATTTCACTAGATGATCCAAGAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340838" ref_strand="+" ref_description="SGN-E340838 [cTOF-5-N23]">
      <seq>ttaggcagtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagncgangtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctatttcactagatgatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110168" stop="107828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109868" g_stop="109527" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="503" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="604" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108128" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="738" r_length="134" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E340838" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109868" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCA</genome_strand>
        <mrna_strand>TTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGNCGANGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326699" ref_strand="+" ref_description="SGN-E326699 [cTOC-17-B12]">
      <seq>tcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaggtcaacctttagctgctctggcaatgattgatgaaggagaacttgactgggaaatagttgctatttcactagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110047" stop="107832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109747" g_stop="109527" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="382" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="483" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="612" r_length="129" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E326699" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109747" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGA</genome_strand>
        <mrna_strand>TCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTC-AACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGGAAATAGTTGCTATTTCACTAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333533" ref_strand="+" ref_description="SGN-E333533 [cTOD-22-E17]">
      <seq>tggactgtggttgatgttaggcagtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaangggcattangtgataatgaccctgttgatgttgttgagattggggatagccgangtaaaattggcccagttctgaaggtcaaacctttagctgctctgggcatgattgatgaaggagaacttgactggaaaatagttgctatttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110184" stop="107838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109884" g_stop="109527" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="519" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="620" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108138" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="744" r_length="124" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E333533" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109884" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACT</genome_strand>
        <mrna_strand>TGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAANGGGCATTANGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGANGTAAAATTGGCCCAGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGGCATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333617" ref_strand="+" ref_description="SGN-E333617 [cTOD-22-F21]">
      <seq>tggactgtggttgatgttaggcagtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattangtgataatgaccctgttgatgttgttgagattggggatagccgaagtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaangagacttgactggaaatagttgctatttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110184" stop="107838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109884" g_stop="109527" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="519" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="620" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108138" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="742" r_length="122" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E333617" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109884" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACT</genome_strand>
        <mrna_strand>TGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTANGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAAGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAANGAG-ACTTGACTGG-AAATAGTTGCTATTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260370" ref_strand="+" ref_description="SGN-E260370 [cLEG-53-F18]">
      <seq>aaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaaagtcaacctttagctgctctggcaatgattgatgaaggagaacttgactggaaaatagttgctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110003" stop="107842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109703" g_stop="109527" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="338" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="439" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108142" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="558" r_length="119" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E260370" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109703" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTT</genome_strand>
        <mrna_strand>AAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAAGTC-AACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333770" ref_strand="+" ref_description="SGN-E333770 [cTOD-22-F17]">
      <seq>tggactgtggttgatgttaggcagtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaagtaaaattggccangttctgaaggtcaaacctttagctgctctggncatgattgatgaaggagaacttgactggaaaatagttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110184" stop="107845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109884" g_stop="109527" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="519" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="620" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108145" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="737" r_length="117" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E333770" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109884" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTA</genome_strand>
        <mrna_strand>TGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAAGTAAAATTGGCCANGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGNCATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327924" ref_strand="+" ref_description="SGN-E327924 [cTOC-22-B17]">
      <seq>ttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaatgggcaggttctgaaggtcaacctttagctgctctggcatgattgatgaaggagacttgactgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110118" stop="107854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109818" g_stop="109527" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="453" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="554" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108154" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="658" r_length="104" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E327924" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109818" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAA</genome_strand>
        <mrna_strand>TTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAA-TGGGCAGGTTCTGAAGGTC-AACCTTTAGCTGCTCTGGC-ATGATTGATGAAGGAG-ACTTGACTGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328749" ref_strand="+" ref_description="SGN-E328749 [cTOC-23-L11]">
      <seq>gcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattangtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaattgggcaggttctgaaggtcaaacctttagctgctctggcaatgattgatgaaagagaacttgactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110144" stop="107858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109844" g_stop="109527" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="479" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="580" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108158" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="683" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E328749" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109844" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGG</genome_strand>
        <mrna_strand>GCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTANGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGT-AAATTGGGCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAAGAGAACTTGACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333734" ref_strand="+" ref_description="SGN-E333734 [cTOD-22-E10]">
      <seq>tggactgtggttgatgttaggcagtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaattnggcccagttctgaagggtcaacctttagctgctctggncatgattgatgaaagagaacttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110184" stop="107860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109884" g_stop="109527" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="519" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="620" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108160" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="722" r_length="102" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E333734" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109884" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACT</genome_strand>
        <mrna_strand>TGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAATTNGGCCCAGTTCTGAAGGGTCAACCTTTAGCTGCTCTGGNCATGATTGATGAAAGAGAACTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332512" ref_strand="+" ref_description="SGN-E332512 [cTOD-17-P2]">
      <seq>actttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgangtaaaattggccaggttctgaaagtcaaacctttagctgctctggcaatgattgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110135" stop="107874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109835" g_stop="109527" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="470" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="571" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108174" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="659" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E332512" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109835" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGA</genome_strand>
        <mrna_strand>ACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGANGTAAAATTGGCCAGGTTCTGAAAGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560215" ref_strand="+" ref_description="SGN-E560215 [19834]">
      <seq>gcactagcaactttcactgttttctcttctccaattatatctcttgccttttgggactgaacacttgccagcgaaacagcaatggcggcggcaagagtcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaagcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactccaattaaacaagacacgaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaacacggaagttgagggggcatttggtgataatgaccctgttgatgttgttgagattggggaaagccgaggtaaaattggccaggttctgaaggtcaaacctttagctgctctggcaatgattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110144" stop="107875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109844" g_stop="109527" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="479" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="580" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="667" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E560215" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109844" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATG</genome_strand>
        <mrna_strand>GCACTAGCAACTTTCACTGTTTTCTCTTCTCCAATTATATCTCTTGCCTTTTGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAGTCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAAGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCAATTAAACAAGACACGAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAACACGGAAGTTGAGGGGGCATTTGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGAAAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333568" ref_strand="+" ref_description="SGN-E333568 [cTOD-22-E6]">
      <seq>tggactgtggttgatgttaggcagtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattangtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattggccaggttctgaagggtcaacctttagctgctctgggcatgattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110184" stop="107876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109884" g_stop="109527" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="519" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="620" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108176" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="706" r_length="86" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E333568" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109884" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGAT</genome_strand>
        <mrna_strand>TGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTANGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGGTCAACCTTTAGCTGCTCTGGGCATGATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268508" ref_strand="+" ref_description="SGN-E268508 [cLEI-13-O15]">
      <seq>atcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatgttgttgagattggggatagccgaggtaaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110040" stop="107923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109740" g_stop="109527" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="375" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="476" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108223" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="515" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E268508" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109740" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTG</genome_strand>
        <mrna_strand>ATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366968" ref_strand="+" ref_description="SGN-E366968 [cLPT-6-K4]">
      <seq>cactagcaactttcactgttttatcttctccaataatttctgttgcctttagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagcccgaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcatttggtgataatgaccctgttgatgctgttgagattggggaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110143" stop="108081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109843" g_stop="109527" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="478" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="579" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108236" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="605" r_length="26" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E366968" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109843" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGATTGGGGATAGC</genome_strand>
        <mrna_strand>CACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCTTTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTTGGTGATAATGACCCTG......................................................................................................................................TTGATGCTGTTGAGATTGGGGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580573" ref_strand="+" ref_description="SGN-E580573 [5816]">
      <seq>cggtgcaagagtcatggtatcaancagcaacatttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcaagctttgcttcagaaacggaccggtgcaaaagaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactccaattaaacaagacaccgaagaaaggggaaacttcgatactatccatataatattcactggaacctatggattgcttcttcaaacatgggaagatcctacttttgcgaacacgaagttgaaggggcattggtgataatgaacctgttgatgttgttgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110054" stop="108087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109759" g_stop="109527" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="394" r_length="163" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="494" r_length="100" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108246" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="510" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E580573" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109759" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACA-CAAAG-AAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAA-CTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTGTTGAGAT</genome_strand>
        <mrna_strand>CGG-TGCAAGAGTCATGGTATCAANCAGCAACA-TTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAAGCTTTGCTTCAGAAACGGACCGGTGCAAAAGAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCAATTAAACAAGACACCGAAGAAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACCTATGGATTGCTTCTTCAAACATGGGAAGATCCTACTTTTGCGAACA-CGAAGTTGAAGGGGCATT-GGTGATAATGAACCTG......................................................................................................................................TTGATGTTGTTGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319905" ref_strand="+" ref_description="SGN-E319905 [cTOB-12-F19]">
      <seq>caactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattangtgataatgaccctgttgatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110137" stop="108087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109837" g_stop="109527" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="472" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="573" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108253" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="582" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E319905" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109837" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATGTTG</genome_strand>
        <mrna_strand>CAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTANGTGATAATGACCCTG......................................................................................................................................TTGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295357" ref_strand="+" ref_description="SGN-E295357 [cLET-23-E12]">
      <seq>ttttatcttctccaataatttctgttgcctttagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattaggtgataatgaccctgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110125" stop="108091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109825" g_stop="109527" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="460" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="561" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108256" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="567" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E295357" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109825" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATG</genome_strand>
        <mrna_strand>TTTTATCTTCTCCAATAATTTCTGTTGCCTTTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG......................................................................................................................................TTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323382" ref_strand="+" ref_description="SGN-E323382 [cTOC-10-K5]">
      <seq>caatggcggcggcaagaatcatggtatcagccancaacgctttaacgggttctctcctatcgaaagggccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcattangtgataatgaccctgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110065" stop="108091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109765" g_stop="109527" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="400" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108396" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="501" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134">
            <donor d_prob="0.396" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108261" g_stop="108256" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="507" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E323382" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109765" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108396"/>
          <exon e_start="108261" e_stop="108256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTGGTATGGTTGCAATAGTTCTAAAAAGTTAACAACTTTCTTCTGGTCCATCTATCAAAACAAAAAGAGTAGAAAAAACAATTGTGTTAGAGATTGTCTTATTTAGTTGAATCTCTCTATGTTTTTCTCATTTGTAGTTGATG</genome_strand>
        <mrna_strand>CAATGGCGGCGGCAAGAATCATGGTATCAGCCANCAACGCTTTAACGGGTTCTCTCCTATCGAAAGGGCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTANGTGATAATGACCCTG......................................................................................................................................TTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333528" ref_strand="+" ref_description="SGN-E333528 [cTOD-22-C13]">
      <seq>tggactgtggttgatgttaggcagtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccgaagttgaaggggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110184" stop="108113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109884" g_stop="109527" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="519" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108413" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="603" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E333528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109884" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATT</genome_strand>
        <mrna_strand>TGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293108" ref_strand="+" ref_description="SGN-E293108 [cLET-12-B3]">
      <seq>cgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggctccgctcctatcgaaaggtccattacgaaggcccaacaattccagcctttgcttcaaaaacggaccggtgcaaaaaaagcgtgttttcacttgcagtgcaatctacaatccccagattcagactatataggaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaatttcgctgacgagagccccaccgaatcaagtgcaaagatggaagttgctacagatgagcaacacacttctattttactagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcacacatgggaagatcctacttttgcgaataccgaagttgaaggggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110073" stop="108115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109773" g_stop="109527" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="408" r_length="161" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108415" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="490" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E293108" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109773" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCA</genome_strand>
        <mrna_strand>CGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTCCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTCCAGCCTTTGCTTCAAAAACGGACCGGTGCAAAAAAAGCGTGTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATATAGGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTCGCTGACGAGAGCCCCACCGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTTCTATTTTACTAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCACACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319596" ref_strand="+" ref_description="SGN-E319596 [cTOB-15-L6]">
      <seq>cagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110068" stop="108128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109768" g_stop="109527" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="403" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108428" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="472" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E319596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109768" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGA</genome_strand>
        <mrna_strand>CAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302102" ref_strand="+" ref_description="SGN-E302102 [cLEW-19-C14]">
      <seq>cactagcaactttcactgttttatcttctccaataatttgtgttgccggtagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaataccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110143" stop="108129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109843" g_stop="109527" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="478" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108429" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="546" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E302102" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109843" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCG</genome_strand>
        <mrna_strand>CACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTGTGTTGCCGGTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314814" ref_strand="+" ref_description="SGN-E314814 [cTOA-20-N23]">
      <seq>gttgatgttaggcagtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110175" stop="108131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109875" g_stop="109527" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="510" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108431" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="576" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E314814" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109875" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATAC</genome_strand>
        <mrna_strand>GTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313130" ref_strand="+" ref_description="SGN-E313130 [cTOA-18-K15]">
      <seq>cactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcaaacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgcgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110143" stop="108131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109843" g_stop="109527" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="478" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108431" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="544" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E313130" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109843" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATAC</genome_strand>
        <mrna_strand>CACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAAACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309953" ref_strand="+" ref_description="SGN-E309953 [cTOA-4-A23]">
      <seq>ttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctacttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110125" stop="108137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109825" g_stop="109527" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="460" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108437" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="520" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E309953" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109825" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGC</genome_strand>
        <mrna_strand>TTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211886" ref_strand="+" ref_description="SGN-E211886 [cLEC-66-E13]">
      <seq>ttgatgttaggcagtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatggggaagatcctacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110174" stop="108138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109874" g_stop="109527" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="509" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108438" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="569" r_length="60" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E211886" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109874" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACAT-GGGAAGATCCTACTTTTG</genome_strand>
        <mrna_strand>TTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGGAAGATCCTACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462949" ref_strand="+" ref_description="SGN-E462949 [cPRO-13-M9]">
      <seq>aacaaacgaatcagaccataccatttgtatatatgtggactgtggttgatgttaggcagtgataggctgatagcaacagcactagcaactttcactgttttctcttctccaattatatctcttgccttttgggactgaacacttgccagcgaaacagcaatggcggctgcaagagtcatggtatcaaccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactccaattaaacaagacacgaagaaggggaaacttcgatactatccatataatattcactggaactatggattgctttctcaaacatgggaagatcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110221" stop="108143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109921" g_stop="109527" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="557" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108443" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="611" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E462949" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109921" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACAAATTAGACCATACCATTTGTGCATATATGTGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAG---CAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTAC</genome_strand>
        <mrna_strand>AACAAACGAATCAGACCATACCATTTGT--ATATATGTGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAACAGCACTAGCAACTTTCACTGTTTTCTCTTCTCCAATTATATCTCTTGCCTTTTGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCTGCAAGAGTCATGGTATCAACCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCAATTAAACAAGACACGAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTTCTCAAACATGGGAAGATCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316643" ref_strand="+" ref_description="SGN-E316643 [cTOB-7-L11]">
      <seq>acacttgccagctaaacagcaatgggggcggcaagaatcatggtatcagccaccaacactttaacggcttcgctcctatcgaaaggtccattacgaaagcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatctagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagatcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110084" stop="108143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109784" g_stop="109527" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="419" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108443" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="473" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E316643" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109784" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTAC</genome_strand>
        <mrna_strand>ACACTTGCCAGCTAAACAGCAATGGGGGCGGCAAGAATCATGGTATCAGCCACCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAAGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCTAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331867" ref_strand="+" ref_description="SGN-E331867 [cTOD-7-N23]">
      <seq>tggactgtggttgatgttaggcagagataggctgatagcagcactatcaactgtcactgtttaatcatctccactaaaatctgtcgccatgagggactgatctctttccagcgaatcaaacatggcggccgattaaagaactgtataatgcatgggcactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttcctcaaacatgggaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110184" stop="108148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109884" g_stop="109527" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="519" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108448" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="568" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E331867" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109884" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGAT</genome_strand>
        <mrna_strand>TGGACTGTGGTTGATGTTAGGCAGAGATAGGCTGATAGCAGCACTATCAACTGTCACTGTTTAATCATCTCCACTAAAATCTGTCGCCATGAGGGACTGATCTCTTTCCAGCGAATCAAACATGGCGGCCGATTAAAGAACTGTATAATGCATGGGCACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200524" ref_strand="+" ref_description="SGN-E200524 [cLEB-8-H11]">
      <seq>gcacgagggttgatgttaggcagtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactataaaaaaaagacagccagaaaccctaaattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110176" stop="108165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109883" g_stop="109527" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="518" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108465" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="550" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E200524" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109883" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTGCTTC</genome_strand>
        <mrna_strand>GCACGAGGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAAAAAAAAGACAGCCAGAAACCCTAAATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374288" ref_strand="+" ref_description="SGN-E374288 [TUS-33-H8]">
      <seq>gactgtggttgatgttaggcagtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110182" stop="108169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109882" g_stop="109527" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="517" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108469" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="545" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E374288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109882" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGATTG</genome_strand>
        <mrna_strand>GACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266093" ref_strand="+" ref_description="SGN-E266093 [cLEI-6-B9]">
      <seq>aactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110136" stop="108172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109836" g_stop="109527" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="471" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108472" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="496" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E266093" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109836" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGA</genome_strand>
        <mrna_strand>AACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559511" ref_strand="+" ref_description="SGN-E559511 [19018]">
      <seq>ccagcgaaacagcaatggcggcggcaagagtcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaagcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactccaattaaacaagacacgaagaaggggaaacttcgatactatccatataatattcactggaactatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110077" stop="108172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109777" g_stop="109527" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="412" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108472" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="437" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E559511" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109777" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGA</genome_strand>
        <mrna_strand>CCAGCGAAACAGCAATGGCGGCGGCAAGAGTCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAAGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCAATTAAACAAGACACGAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282018" ref_strand="+" ref_description="SGN-E282018 [cLES-2-H9]">
      <seq>agcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactggaactatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110067" stop="108172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109767" g_stop="109527" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="402" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108472" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="427" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E282018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109767" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGA</genome_strand>
        <mrna_strand>AGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473076" ref_strand="+" ref_description="SGN-E473076 [cSTB-31-E9]">
      <seq>ggcggctgcaagagtcatggtatcaaccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactccaattaaacaagacacgaagaaggggaaacttcgatactatccatataatattcactggaactatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110061" stop="108172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109761" g_stop="109527" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="396" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108472" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="421" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E473076" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109761" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATGGA</genome_strand>
        <mrna_strand>GGCGGCTGCAAGAGTCATGGTATCAACCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCAATTAAACAAGACACGAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGAACTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291142" ref_strand="+" ref_description="SGN-E291142 [cLET-8-P15]">
      <seq>agcactagcaactttcactgttttatcttctccaataatttctgttgcctttagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatagaagaaggacagccagaaaccctagattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctattaaacaagacacaaagaaggggaaacttcgatactatccatataatattcactgggactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110145" stop="108174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109845" g_stop="109527" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108927" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="480" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108496" g_stop="108474" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="503" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E291142" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109845" e_stop="109527"/>
          <exon e_start="109087" e_stop="108927"/>
          <exon e_start="108496" e_stop="108474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCCGTAAGCCTATTATGCGACTTTTCTACATTCTTTTAGTATGTTAAACATTGTCAGATGTAATTATCTTCTTGCTTTCCTACCCATTCCGCTTTTAGTTGTCGTGGGATTTTGACCCATTGCCATTTGCAAGCAGTTGTCTTTATGCTTCTTGGCTTCCTACCCATTCCACTTTTAGTTGGCGTGGGATTTTGACCTATTGTCATTTGCAAGCAGTTGTCTTTATGAGTTAACTGCAGTTTTCTGTGGGTCAATATGTTTAGGTCTGTTACATATGCTTTTTGTTAAGCAATGACCGATACCCTCGCTCTTCAATCTTAGACTGATGAGATTTGTACCTCACTGATGATGTGTCGTCATAGCTGTCTGGAGTTGTCTAGTTTCTGATGCTTTTTTTTTTTTTGATGTTATGCATTTCTTATGCATCTTTCAGATATAATATTCACTGGAACTATG</genome_strand>
        <mrna_strand>AGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCTTTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATATTCACTGGGACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725497" ref_strand="+" ref_description="SGN-E725497 [LA03DC05]">
      <seq>acttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagagtcagacttatagaagaaggacagccagaaaccctagactaccgcgtgttttttgcagacaattccggcaaaaagaaatccccttggcatgacataccacttacacttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcctactaaacaagacacaaagaaggggaaacttcgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110082" stop="108633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109782" g_stop="109527" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108933" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="413" r_length="156" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E725497" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109782" e_stop="109527"/>
          <exon e_start="109087" e_stop="108933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGAC-TATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCAC-TACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATA</genome_strand>
        <mrna_strand>ACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGAGTCAGACTTATAGAAGAAGGACAGCCAGAAACCCTAGACTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCCCTTGGCATGACATACCACTTACACTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTACTAAACAAGACACAAAGAAGGGGAAACTTCGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470791" ref_strand="+" ref_description="SGN-E470791 [cSTB-20-F11]">
      <seq>cactagcaactttcactgttttctcttctccaattatatctcttgccttttgggactgaacacttgccagcgaaacagcaatggcggctgcaagagtcatggtatcaaccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110143" stop="108669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109843" g_stop="109527" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108968" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="437" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E470791" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109843" e_stop="109527"/>
          <exon e_start="109087" e_stop="108968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCT</genome_strand>
        <mrna_strand>CACTAGCAACTTTCACTGTTTTCTCTTCTCCAATTATATCTCTTGCCTTTTGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCTGCAAGAGTCATGGTATCAACCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473446" ref_strand="+" ref_description="SGN-E473446 [cSTB-32-K24]">
      <seq>tttctcttctccaattatatctcttgccttttgggactgaacagtgaacacttgccagcgaaacagcaatggcggcggcaagagtcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaaaaggcgtcttttcacgtgcagtgcaatctacaatccacagattcagactatagaagaaggacagcccgaaaccctagattaccgtgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagatggaagttgctacagatgagcaacacactcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110089" stop="108669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109791" g_stop="109527" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="305" r_length="265" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108968" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="425" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E473446" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109791" e_stop="109527"/>
          <exon e_start="109087" e_stop="108968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCT</genome_strand>
        <mrna_strand>ACAGTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAGTCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAAAGGCGTCTTTTCACGTGCAGTGCAATCTACAATCCACAGATTCAGACTATAGAAGAAGGACAGCCCGAAACCCTAGATTACCGTGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324573" ref_strand="+" ref_description="SGN-E324573 [cTOC-9-L21]">
      <seq>cagcactagcaacttgcactgttttatcttcggcaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcagactatataagaaggacagccacaaaccctatattaccgcgtgttttttgcagacaattccggcaaaaagatatccccttggcatgacataccactacatttgggtgatggtgttttcaattttgttgttgagatccccaaagaatcaagtgcaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110146" stop="108699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109846" g_stop="109527" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109087" g_stop="108999" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="409" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E324573" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109846" e_stop="109527"/>
          <exon e_start="109087" e_stop="108999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAGGTAAATATTTGTCTCTACCTTGACAGTGGATTTCTCATTATCGGGATATTGTAATCTGGAAATTTCACTATTCTGTGAATGAGCCTGAATAGAGCGGAGTAGTTACAGAGAAACACTTAGCTTTGGCCTCTAGTACCTTGGATTGAGATGTAATCCATTGATGGATCGACATACTGATGAAATGCCTAATCGCGAGATATGTTATCCATGAAATTTGTTCAGTGAGACATTTCCACATTCTGTAGTTTAACATGATCCGAAGTAGGGAAGTCAACGATAAGAACCATTTAAAAATAAGTAATTGCTTGAAAGCTATGAGGATAAATAGCATATTCATCTTTATTATTTGTTAGCGTTTACTTCGTGAAAAGAACAGAGCTTTTGGTCTGTCTAGTTACAATAGTTGCAACATATTATATCATGTCTTTGTAATGTGCAGATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGAT</genome_strand>
        <mrna_strand>CAGCACTAGCAACTTGCACTGTTTTATCTTCGGCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATATAAGAAGGACAGCCACAAACCCTATATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294406" ref_strand="+" ref_description="SGN-E294406 [cLET-14-E4]">
      <seq>tggactgcggttgatgttaggcagtgatatgctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgcctttagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacaatttcagcctttgcttcagaaacggaccggtgcaaaagaagcgtcttttcacttgcagtgcaatctacaatccccagattcatactatagaataaggacagccagaaaccctagattaccgcgtgttttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110184" stop="109246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109884" g_stop="109546" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E294406" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109884" e_stop="109546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGC</genome_strand>
        <mrna_strand>TGGACTGCGGTTGATGTTAGGCAGTGATATGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCTTTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCATACTATAGAATAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291141" ref_strand="+" ref_description="SGN-E291141 [cLET-8-P13]">
      <seq>agcactagcaactttcactgttttatcttctccaataatttctgatgcctttagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaacggcttcgctcctatcgaaaggtccattacgaaggcccaacactttcagcctttgcttcataaacggaccggagcaaaagaagcggattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110145" stop="109328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109845" g_stop="109628" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E291141" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109845" e_stop="109628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCA</genome_strand>
        <mrna_strand>AGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGATGCCTTTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACACTTTCAGCCTTTGCTTCATAAACGGACCGGAGCAAAAGAAGCGGATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305660" ref_strand="+" ref_description="SGN-E305660 [cLEX-14-F2]">
      <seq>gactgtggttgatgttaggcagtgataggctgatagcagcactagcaactttcactgttttatcttctccaataatttctgttgccattagggactgaacacttgccagcgaaacagcaatggcggcggcaagaatcatggtatcagccagcaacactttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="110182" stop="109421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109882" g_stop="109721" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E305660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>162</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109882" e_stop="109721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAA</genome_strand>
        <mrna_strand>GACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374449" ref_strand="+" ref_description="SGN-E374449 [TUS-38-J4]">
      <seq>aattttctaatttcacattatcaatggctttatcagagatcgagatcgtttccgactccaatgatcagcaaacttctggttttcgaaaccctaacgaaccagccatagtcgatgtttacgctgcttgcgcttacggtgattttgacaaactccggaaattcgttgaagttgacggcgtttccgtttaccagccggacggcaacggatattacgcgcttcaatgggctgctctcaacaatttcgctgatattgttcaatatatcatcgagcacgggggaaatgtccacgcggccgacaattcgggacagactgcgttgcattgggcggcagtgcggggatcaattgcagctgccgatgtgttgttgcagaatggtgcgcgggtcgaggctgctgatgttaatggttatcgggcaattcatgttgcatctcagtatggacaaacagcttttgtaaatcacattgttgcgaagtatcatgcggaccttaatgtaccagataatgatgggaggagccctcttcactgggctgcatacaagggatttggtgatacaatcaggttacttctattcagagatgctttccaagggagacaagataaagatggttgcactcctttgcattgtgcagcattaagaggaaatgcagaggcttgcactttacttgtacatgcaggcacaaaggaggatttaacagtaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="111206" stop="115892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111506" g_stop="111774" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111775" i_stop="111869" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111870" g_stop="112010" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="410" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112011" i_stop="112764" i_length="754">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112765" g_stop="112877" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="523" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112878" i_stop="114354" i_length="1477">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114355" g_stop="114434" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="603" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114435" i_stop="115496" i_length="1062">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115497" g_stop="115592" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="699" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E374449" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111506" e_stop="111774"/>
          <exon e_start="111870" e_stop="112010"/>
          <exon e_start="112765" e_stop="112877"/>
          <exon e_start="114355" e_stop="114434"/>
          <exon e_start="115497" e_stop="115592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCTAATTTCACATTATCAATGGCTTTATCAGAGATCGAGATCGTTTCCGACTCCAATGATCAGCAAACTTCTGGTTTTCGAAACCCTAACGAACCAGCCATAGTCGATGTTTACGCTGCTTGCGCTTACGGTGATTTTGACAAACTCCGGAAATTCGTTGAAGTTGACGGCGTTTCCGTTTACCAGCCGGACGGCAACGGATATTACGCGCTTCAATGGGCTGCTCTCAACAATTTCGCTGATATTGTTCAATATATCATCGAGGTATTATTATTTGCCTTTTTATTAAATGAGGGTCGAGTTTTTAATTGTTCATTTGGAAGTCAAGTATGGTGTTTTTTTATTTGTGGTATGTGTAGCACGGGGGAAATGTCCACGCGGCCGACAATTCGGGACAGACTGCGTTGCATTGGGCGGCAGTGCGGGGATCAATTGCAGCTGCCGATGTGTTGTTGCAGAATGGTGCGCGGGTCGAGGCTGCTGATGTTAATGGTTATCGGGTAATATATAATACTTGCTGTTCATTTGTAATGTTCAACTATTCATAATTTCGGTATTATTGTTGTCATTTTCAAATCCATCTGTATAAGTTGGTATTTGCAATACAAGATGTGGTTAAACTTTCTAATGTCCTTAGTCTCCTCGCCGTTTAGGCTAAGCTGGAACTATGTTTTTTGCATTGGTTCCATGATGGAACTGATACCACTGTCAGGTCTCTGTGTAGCTTCCAGAACATCCAAGTTGGATGCAACAGAATTAATAAAGTTTCTAATTGTTTTTCTTAACGAGTGAGTGCCATAGGCTTGTAGCTGAAAACCCATAGGTGAAAACCTAAAAGAGAATTTGGTTCAAACTTTGAATTAAAAGGACTATGTTTTGTTTGTTTATTTAGTCTCCAAGTATAAGGTTTCAATGAAATAAATGATCCATCACCTGTTCTTGTATCGGCAGGTACACTTGGTGCAGATGGATTTTACAGAACCTCTCCCTTAATTATTCCTAAATTCTTTTTATCCAAGTTTCATAATCAGTTACAGGCTTCTTGTTCTCATGCTTCCTCTTGACCATTATTCATCTTCTTCCATTTTCCCTGACCTAGAGTCCATGCTAGATTTTATTACATAATTCAAAAATTGTCAGTGTGAAATCCTGATTTTAGAACCTTCTAGAAACTAATTTTCTTGGATAAGGCTATCCTTGAAGGTTGTTTTTTCAGTTATATCAACTGTTGAAGTATGTGTACTTCCTTTACAGGCAATTCATGTTGCATCTCAGTATGGACAAACAGCTTTTGTAAATCACATTGTTGCGAAGTATCATGCGGACCTTAATGTACCAGATAATGATGGGAGGAGCCCTCTTCACTGGTATGATTAGCACCCCCAGCATTTATAGACTTATAGTTTGAGTTTTCGGTTTTGAGTTGAAACTCCATCATCTTCTCGATTTTTAAGTGACAAATCTCCCATGACTCTTTGATATATTTTGGTTCTGATCTCTGGATGTGCTTGTGGTCTGTGTAAGTTTCATGGCAAGTTCACTTATAGTTTTCTTGGGACTGAAATTATCCTTCTACGTATAGATATTTCTTCTTGCCTTGCCTGAGATCTGGCTACTTCCCCAACCACGAGTACTTAATAAACAGACAAATTCCAAAATATTTCCCTCTTTTGTTCTCAGTTTTTTAATTTTAGTCTTATGTATCTCACTGAACAATTGTAAAGAAACTAATTATTTTGGATGCCATTTTCAGCTGGCTTCGGGCAGTCTAGGTAAAGTTAATTAAGTATGTGACGTGAACATGAGAACTTTAAGCGTCAACTATTTTATATATGTTAAACCAAGATCTTAGGAGAAGATCCTGTACCATTCTAAGTAGAAGATATACACCATCGGTGAGCAAAAATGTGGAAGTTTTACATGTCCATGGGAGTTGCTCTAGCCTTGGTTACATGTAGAAATACTAAGACTATCAGATCACAACACAAAAACAAACTCCATATATTTCATATATACCACTATCACATATAATAGATTCCAGTAATTCAACATACAATAGAAAGTACAAAAATAATTCTGATGACTAAAAAGGTTGTAAACACTACACTGTGCTAGATCTGATAAGGATATGCGTTCCTCTTCCTTTCTGATTTCACATTGTTCGAATAAAGGAGTTGATAGGCTATTTGGTCAGAAATTCGTTTCTTACATAGTAACTCCCAAACTTCTTTAAAAGATCCCATTTAATAAACTACACGGAAAACTGGGGAAGAAGTGTTGTCTTTTAGTTGTAGAGTGGAGAGTAAAGTGGTGAACATCCAACTCGGTAGATTGGTGTTGCACAGGTCTTAGTGGTGTGTTACATCAGGACTCAAGTATGGCGTCGATATGTGAAGTTTGATGTCCGTGTTTTCTAGCTTTGGTTATAGCTGGATTGGTAATTTTCCCTCTTTATTTATGCTTGCTCCTAACTTCCTATTAGTAGTGTCATCTTAACAAGTCTAAACTGCGAGACTGTATCATTGTTTGACATTGTATACCACTCTTGATTCTGATTTAGTTTTTAGTTTTCAAGCTTTGGTGTTCCTTTCTACTCTCAGTATCTTAAATCTTTTATTCCTGGTATTGCATGCAATTTGGGGCGTTCCTCATTCCCTATTGGACATTGAAAATTTTGTTTTTGTCAAACGGAAGGCAGAGTTCTTGCCCTCTGGTGTTGGTTTGTGTAATTTAAAAATGAATGTTTTACTAGTTGATCTTCATGATAGTTCTTTATATTGTTATCTCATTTCTTTGCTGAAGTTATCCATTATTATAAGCATTTTCTCTGGTATTTCCAACTAGGGCTGCATACAAGGGATTTGGTGATACAATCAGGTTACTTCTATTCAGAGATGCTTTCCAAGGGAGACAAGATAAAGATGGTATGTTCATAATGAATGTACCATTTTCTTAAATTCCCTTGGTGTAAATGTAATGCTTTTGTGAGTTGGGGATTTTGCTTATGAATGTGGCCTTCCAATCATAGTCATTAATTATGATAATTTGATGGAAATGGAAATAATAGATGCAGCATTGAAGTTGGTTTTTTCCATTGTTAGTGTTGCTTCAATAGTCTATGTTATCCAATAGTTATGGTTGTGTAGTAATGTCTTGCAAAAAATGCTTGTGTAAATATGATATGCAAGTTGCAGTCTCTAATAATTTCTTCTCTCGTCTAAGTTTGATTACAGGTGGAGATTCTAAGCATCTTATTAGTAGTTTGTTTTCTGGTGCTTCTTTTAATAAAATGATGGTCTACATAAATTTTACACTTCGCTAAAGGAATGATTTCGTGTTTTGTTAGTTCTGGGGAAACTTCTGTTTAGCAGTAAAAAGCAACAGTTCGGATTGGGGTCTAAATGTCCCTCCTTTTGCTTGAAGCTTCATAATCAATGGACAGAAAGAAAGTAACATTGCAGGGCTTTTTGTGAAGAATTTATATTGGCTGTCAAGAGTATATACTCAGTGGAGAATGAAATCGAGAACTCCTTTGAGCAAATCTCTTTTTGTTGATACGTTGAAATCAAGTGGGATTTTATTTGTTTTCTGGGATGAACCTTTGGAAGAGGAAGACTTAGAATATAGTTTGTGGTTTTTTCCCTCCTTTTGTTGTGGGATTGCTTATCATTCTTCCATTAATGTATGGGTGCTGTATTTCCATTTTGCAGCATTCTAAGATTTTGGCATGGTCATATCTGAAAGTTTGGGAATAAGTGTCCACTGGCTTCATGTGTTTTTTAATTGCTCATTTTTTCCTCGGGGGTGTTCTGACCATAACTGATGTGAATAATACTTTTCCTGGAAGAGGTTTTGGTTGATCTTATTTTTCAAATAAATTTTACTGTTTGACCGTGATAATTGCTATCTAAATACATCCGGGCGCCAAATTATTATTTAGAGCCACAAACATAGTTGCATAATGCTGATACTTCAAAGGTTTGCAGGTTGCACTCCTTTGCATTGGGCAGCATTAAGAGGAAATGCAGAGGCTTGCACTTTACTTGTACATGCAGGCACAAAGGAGGATTTAACAGTAAAAG</genome_strand>
        <mrna_strand>AATTTTCTAATTTCACATTATCAATGGCTTTATCAGAGATCGAGATCGTTTCCGACTCCAATGATCAGCAAACTTCTGGTTTTCGAAACCCTAACGAACCAGCCATAGTCGATGTTTACGCTGCTTGCGCTTACGGTGATTTTGACAAACTCCGGAAATTCGTTGAAGTTGACGGCGTTTCCGTTTACCAGCCGGACGGCAACGGATATTACGCGCTTCAATGGGCTGCTCTCAACAATTTCGCTGATATTGTTCAATATATCATCGAG...............................................................................................CACGGGGGAAATGTCCACGCGGCCGACAATTCGGGACAGACTGCGTTGCATTGGGCGGCAGTGCGGGGATCAATTGCAGCTGCCGATGTGTTGTTGCAGAATGGTGCGCGGGTCGAGGCTGCTGATGTTAATGGTTATCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTCATGTTGCATCTCAGTATGGACAAACAGCTTTTGTAAATCACATTGTTGCGAAGTATCATGCGGACCTTAATGTACCAGATAATGATGGGAGGAGCCCTCTTCACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCATACAAGGGATTTGGTGATACAATCAGGTTACTTCTATTCAGAGATGCTTTCCAAGGGAGACAAGATAAAGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCACTCCTTTGCATTGTGCAGCATTAAGAGGAAATGCAGAGGCTTGCACTTTACTTGTACATGCAGGCACAAAGGAGGATTTAACAGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295709" ref_strand="+" ref_description="SGN-E295709 [cLET-25-L6]">
      <seq>aattttctaatttcacattatcaatggctttatcagagatcgagatcgtttccgactccaatgatcagcaaacttctggttttcgaaaccctaacgaaccagccatagtcgatgtttacgctgcttgcgcttacggtgattttgacaaactccggaaattcgttgaagttgacggcgtttccgtttaccagccggacggcaacggatattacgcgcttcaatgggctgctctcaacaatttcgctgatattgttcaatatatcatcgagcacgggggaaatgtccacgcggccgacaattcgggacagactgcgttgcattgggcggcagtgcggggatcaattgcagctgccgatgtgttgttgcagaatggtgcgcgggtcgaggctgctgatgttaatggttatcgggcaattcatgttgcatctcagtatggacaaacagcttttgtaaatcacattgttgcgaagtatcatgcggaccttaatgtaccagataatgatgggaggagccctcttcactgggctgcatacaagggatttggtgatacaatcaggttacttctattcagagatgctttccaagggagacaagataaagatggttgcactcctttgcattgggcagcattaagaggaaatgcagaggcttgcactttacttgtacatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="111206" stop="115864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111506" g_stop="111774" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111775" i_stop="111869" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111870" g_stop="112010" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="410" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112011" i_stop="112764" i_length="754">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112765" g_stop="112877" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="523" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112878" i_stop="114354" i_length="1477">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114355" g_stop="114434" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="603" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114435" i_stop="115496" i_length="1062">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115497" g_stop="115564" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="671" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E295709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111506" e_stop="111774"/>
          <exon e_start="111870" e_stop="112010"/>
          <exon e_start="112765" e_stop="112877"/>
          <exon e_start="114355" e_stop="114434"/>
          <exon e_start="115497" e_stop="115564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCTAATTTCACATTATCAATGGCTTTATCAGAGATCGAGATCGTTTCCGACTCCAATGATCAGCAAACTTCTGGTTTTCGAAACCCTAACGAACCAGCCATAGTCGATGTTTACGCTGCTTGCGCTTACGGTGATTTTGACAAACTCCGGAAATTCGTTGAAGTTGACGGCGTTTCCGTTTACCAGCCGGACGGCAACGGATATTACGCGCTTCAATGGGCTGCTCTCAACAATTTCGCTGATATTGTTCAATATATCATCGAGGTATTATTATTTGCCTTTTTATTAAATGAGGGTCGAGTTTTTAATTGTTCATTTGGAAGTCAAGTATGGTGTTTTTTTATTTGTGGTATGTGTAGCACGGGGGAAATGTCCACGCGGCCGACAATTCGGGACAGACTGCGTTGCATTGGGCGGCAGTGCGGGGATCAATTGCAGCTGCCGATGTGTTGTTGCAGAATGGTGCGCGGGTCGAGGCTGCTGATGTTAATGGTTATCGGGTAATATATAATACTTGCTGTTCATTTGTAATGTTCAACTATTCATAATTTCGGTATTATTGTTGTCATTTTCAAATCCATCTGTATAAGTTGGTATTTGCAATACAAGATGTGGTTAAACTTTCTAATGTCCTTAGTCTCCTCGCCGTTTAGGCTAAGCTGGAACTATGTTTTTTGCATTGGTTCCATGATGGAACTGATACCACTGTCAGGTCTCTGTGTAGCTTCCAGAACATCCAAGTTGGATGCAACAGAATTAATAAAGTTTCTAATTGTTTTTCTTAACGAGTGAGTGCCATAGGCTTGTAGCTGAAAACCCATAGGTGAAAACCTAAAAGAGAATTTGGTTCAAACTTTGAATTAAAAGGACTATGTTTTGTTTGTTTATTTAGTCTCCAAGTATAAGGTTTCAATGAAATAAATGATCCATCACCTGTTCTTGTATCGGCAGGTACACTTGGTGCAGATGGATTTTACAGAACCTCTCCCTTAATTATTCCTAAATTCTTTTTATCCAAGTTTCATAATCAGTTACAGGCTTCTTGTTCTCATGCTTCCTCTTGACCATTATTCATCTTCTTCCATTTTCCCTGACCTAGAGTCCATGCTAGATTTTATTACATAATTCAAAAATTGTCAGTGTGAAATCCTGATTTTAGAACCTTCTAGAAACTAATTTTCTTGGATAAGGCTATCCTTGAAGGTTGTTTTTTCAGTTATATCAACTGTTGAAGTATGTGTACTTCCTTTACAGGCAATTCATGTTGCATCTCAGTATGGACAAACAGCTTTTGTAAATCACATTGTTGCGAAGTATCATGCGGACCTTAATGTACCAGATAATGATGGGAGGAGCCCTCTTCACTGGTATGATTAGCACCCCCAGCATTTATAGACTTATAGTTTGAGTTTTCGGTTTTGAGTTGAAACTCCATCATCTTCTCGATTTTTAAGTGACAAATCTCCCATGACTCTTTGATATATTTTGGTTCTGATCTCTGGATGTGCTTGTGGTCTGTGTAAGTTTCATGGCAAGTTCACTTATAGTTTTCTTGGGACTGAAATTATCCTTCTACGTATAGATATTTCTTCTTGCCTTGCCTGAGATCTGGCTACTTCCCCAACCACGAGTACTTAATAAACAGACAAATTCCAAAATATTTCCCTCTTTTGTTCTCAGTTTTTTAATTTTAGTCTTATGTATCTCACTGAACAATTGTAAAGAAACTAATTATTTTGGATGCCATTTTCAGCTGGCTTCGGGCAGTCTAGGTAAAGTTAATTAAGTATGTGACGTGAACATGAGAACTTTAAGCGTCAACTATTTTATATATGTTAAACCAAGATCTTAGGAGAAGATCCTGTACCATTCTAAGTAGAAGATATACACCATCGGTGAGCAAAAATGTGGAAGTTTTACATGTCCATGGGAGTTGCTCTAGCCTTGGTTACATGTAGAAATACTAAGACTATCAGATCACAACACAAAAACAAACTCCATATATTTCATATATACCACTATCACATATAATAGATTCCAGTAATTCAACATACAATAGAAAGTACAAAAATAATTCTGATGACTAAAAAGGTTGTAAACACTACACTGTGCTAGATCTGATAAGGATATGCGTTCCTCTTCCTTTCTGATTTCACATTGTTCGAATAAAGGAGTTGATAGGCTATTTGGTCAGAAATTCGTTTCTTACATAGTAACTCCCAAACTTCTTTAAAAGATCCCATTTAATAAACTACACGGAAAACTGGGGAAGAAGTGTTGTCTTTTAGTTGTAGAGTGGAGAGTAAAGTGGTGAACATCCAACTCGGTAGATTGGTGTTGCACAGGTCTTAGTGGTGTGTTACATCAGGACTCAAGTATGGCGTCGATATGTGAAGTTTGATGTCCGTGTTTTCTAGCTTTGGTTATAGCTGGATTGGTAATTTTCCCTCTTTATTTATGCTTGCTCCTAACTTCCTATTAGTAGTGTCATCTTAACAAGTCTAAACTGCGAGACTGTATCATTGTTTGACATTGTATACCACTCTTGATTCTGATTTAGTTTTTAGTTTTCAAGCTTTGGTGTTCCTTTCTACTCTCAGTATCTTAAATCTTTTATTCCTGGTATTGCATGCAATTTGGGGCGTTCCTCATTCCCTATTGGACATTGAAAATTTTGTTTTTGTCAAACGGAAGGCAGAGTTCTTGCCCTCTGGTGTTGGTTTGTGTAATTTAAAAATGAATGTTTTACTAGTTGATCTTCATGATAGTTCTTTATATTGTTATCTCATTTCTTTGCTGAAGTTATCCATTATTATAAGCATTTTCTCTGGTATTTCCAACTAGGGCTGCATACAAGGGATTTGGTGATACAATCAGGTTACTTCTATTCAGAGATGCTTTCCAAGGGAGACAAGATAAAGATGGTATGTTCATAATGAATGTACCATTTTCTTAAATTCCCTTGGTGTAAATGTAATGCTTTTGTGAGTTGGGGATTTTGCTTATGAATGTGGCCTTCCAATCATAGTCATTAATTATGATAATTTGATGGAAATGGAAATAATAGATGCAGCATTGAAGTTGGTTTTTTCCATTGTTAGTGTTGCTTCAATAGTCTATGTTATCCAATAGTTATGGTTGTGTAGTAATGTCTTGCAAAAAATGCTTGTGTAAATATGATATGCAAGTTGCAGTCTCTAATAATTTCTTCTCTCGTCTAAGTTTGATTACAGGTGGAGATTCTAAGCATCTTATTAGTAGTTTGTTTTCTGGTGCTTCTTTTAATAAAATGATGGTCTACATAAATTTTACACTTCGCTAAAGGAATGATTTCGTGTTTTGTTAGTTCTGGGGAAACTTCTGTTTAGCAGTAAAAAGCAACAGTTCGGATTGGGGTCTAAATGTCCCTCCTTTTGCTTGAAGCTTCATAATCAATGGACAGAAAGAAAGTAACATTGCAGGGCTTTTTGTGAAGAATTTATATTGGCTGTCAAGAGTATATACTCAGTGGAGAATGAAATCGAGAACTCCTTTGAGCAAATCTCTTTTTGTTGATACGTTGAAATCAAGTGGGATTTTATTTGTTTTCTGGGATGAACCTTTGGAAGAGGAAGACTTAGAATATAGTTTGTGGTTTTTTCCCTCCTTTTGTTGTGGGATTGCTTATCATTCTTCCATTAATGTATGGGTGCTGTATTTCCATTTTGCAGCATTCTAAGATTTTGGCATGGTCATATCTGAAAGTTTGGGAATAAGTGTCCACTGGCTTCATGTGTTTTTTAATTGCTCATTTTTTCCTCGGGGGTGTTCTGACCATAACTGATGTGAATAATACTTTTCCTGGAAGAGGTTTTGGTTGATCTTATTTTTCAAATAAATTTTACTGTTTGACCGTGATAATTGCTATCTAAATACATCCGGGCGCCAAATTATTATTTAGAGCCACAAACATAGTTGCATAATGCTGATACTTCAAAGGTTTGCAGGTTGCACTCCTTTGCATTGGGCAGCATTAAGAGGAAATGCAGAGGCTTGCACTTTACTTGTACATGCA</genome_strand>
        <mrna_strand>AATTTTCTAATTTCACATTATCAATGGCTTTATCAGAGATCGAGATCGTTTCCGACTCCAATGATCAGCAAACTTCTGGTTTTCGAAACCCTAACGAACCAGCCATAGTCGATGTTTACGCTGCTTGCGCTTACGGTGATTTTGACAAACTCCGGAAATTCGTTGAAGTTGACGGCGTTTCCGTTTACCAGCCGGACGGCAACGGATATTACGCGCTTCAATGGGCTGCTCTCAACAATTTCGCTGATATTGTTCAATATATCATCGAG...............................................................................................CACGGGGGAAATGTCCACGCGGCCGACAATTCGGGACAGACTGCGTTGCATTGGGCGGCAGTGCGGGGATCAATTGCAGCTGCCGATGTGTTGTTGCAGAATGGTGCGCGGGTCGAGGCTGCTGATGTTAATGGTTATCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTCATGTTGCATCTCAGTATGGACAAACAGCTTTTGTAAATCACATTGTTGCGAAGTATCATGCGGACCTTAATGTACCAGATAATGATGGGAGGAGCCCTCTTCACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCATACAAGGGATTTGGTGATACAATCAGGTTACTTCTATTCAGAGATGCTTTCCAAGGGAGACAAGATAAAGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCACTCCTTTGCATTGGGCAGCATTAAGAGGAAATGCAGAGGCTTGCACTTTACTTGTACATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292816" ref_strand="+" ref_description="SGN-E292816 [cLET-11-K23]">
      <seq>aattttctaatttcacattatcaatggctttatcagagatcgagatcgtttccgactccaatgatcagcaaacttctggttttcgaaaccctaacgaaccagccatagtcgatgtttacgctgcttgcgcttacggtgattttgacaaactccggaaattcgttgaagttgacggcgtttccgtttaccagccggacggcaacggatattacgcgcttcaatgggctgctctcaacaatttcgctgatattgttcaatatatcatcgagcacgggggaaatgtccacgcggccgacaattcgggacagactgcgttgcattgggcggcagtgcggggatcaattgcagctgccgatgtgttgttgcagaatggtgcgcgggtcgaggctgctgatgttaatggttatcgggcaattcatgttgcatctcagtatggacaaacagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="111206" stop="113102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111506" g_stop="111774" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111775" i_stop="111869" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111870" g_stop="112010" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="410" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112011" i_stop="112764" i_length="754">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112765" g_stop="112802" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="448" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E292816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111506" e_stop="111774"/>
          <exon e_start="111870" e_stop="112010"/>
          <exon e_start="112765" e_stop="112802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCTAATTTCACATTATCAATGGCTTTATCAGAGATCGAGATCGTTTCCGACTCCAATGATCAGCAAACTTCTGGTTTTCGAAACCCTAACGAACCAGCCATAGTCGATGTTTACGCTGCTTGCGCTTACGGTGATTTTGACAAACTCCGGAAATTCGTTGAAGTTGACGGCGTTTCCGTTTACCAGCCGGACGGCAACGGATATTACGCGCTTCAATGGGCTGCTCTCAACAATTTCGCTGATATTGTTCAATATATCATCGAGGTATTATTATTTGCCTTTTTATTAAATGAGGGTCGAGTTTTTAATTGTTCATTTGGAAGTCAAGTATGGTGTTTTTTTATTTGTGGTATGTGTAGCACGGGGGAAATGTCCACGCGGCCGACAATTCGGGACAGACTGCGTTGCATTGGGCGGCAGTGCGGGGATCAATTGCAGCTGCCGATGTGTTGTTGCAGAATGGTGCGCGGGTCGAGGCTGCTGATGTTAATGGTTATCGGGTAATATATAATACTTGCTGTTCATTTGTAATGTTCAACTATTCATAATTTCGGTATTATTGTTGTCATTTTCAAATCCATCTGTATAAGTTGGTATTTGCAATACAAGATGTGGTTAAACTTTCTAATGTCCTTAGTCTCCTCGCCGTTTAGGCTAAGCTGGAACTATGTTTTTTGCATTGGTTCCATGATGGAACTGATACCACTGTCAGGTCTCTGTGTAGCTTCCAGAACATCCAAGTTGGATGCAACAGAATTAATAAAGTTTCTAATTGTTTTTCTTAACGAGTGAGTGCCATAGGCTTGTAGCTGAAAACCCATAGGTGAAAACCTAAAAGAGAATTTGGTTCAAACTTTGAATTAAAAGGACTATGTTTTGTTTGTTTATTTAGTCTCCAAGTATAAGGTTTCAATGAAATAAATGATCCATCACCTGTTCTTGTATCGGCAGGTACACTTGGTGCAGATGGATTTTACAGAACCTCTCCCTTAATTATTCCTAAATTCTTTTTATCCAAGTTTCATAATCAGTTACAGGCTTCTTGTTCTCATGCTTCCTCTTGACCATTATTCATCTTCTTCCATTTTCCCTGACCTAGAGTCCATGCTAGATTTTATTACATAATTCAAAAATTGTCAGTGTGAAATCCTGATTTTAGAACCTTCTAGAAACTAATTTTCTTGGATAAGGCTATCCTTGAAGGTTGTTTTTTCAGTTATATCAACTGTTGAAGTATGTGTACTTCCTTTACAGGCAATTCATGTTGCATCTCAGTATGGACAAACAGCTTT</genome_strand>
        <mrna_strand>AATTTTCTAATTTCACATTATCAATGGCTTTATCAGAGATCGAGATCGTTTCCGACTCCAATGATCAGCAAACTTCTGGTTTTCGAAACCCTAACGAACCAGCCATAGTCGATGTTTACGCTGCTTGCGCTTACGGTGATTTTGACAAACTCCGGAAATTCGTTGAAGTTGACGGCGTTTCCGTTTACCAGCCGGACGGCAACGGATATTACGCGCTTCAATGGGCTGCTCTCAACAATTTCGCTGATATTGTTCAATATATCATCGAG...............................................................................................CACGGGGGAAATGTCCACGCGGCCGACAATTCGGGACAGACTGCGTTGCATTGGGCGGCAGTGCGGGGATCAATTGCAGCTGCCGATGTGTTGTTGCAGAATGGTGCGCGGGTCGAGGCTGCTGATGTTAATGGTTATCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTCATGTTGCATCTCAGTATGGACAAACAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212082" ref_strand="+" ref_description="SGN-E212082 [cLEC-75-I5]">
      <seq>atattacgcgcttcaatgggctgctctcaacaatttcgctgatattgttcaatatatcatcgagcacgggggaaatgtccacgcggccgacaattcgggacagactgcgttgcattgggcggcagtgcggggatcaattgcagctgccgatgtgttgttgcagaatggtgcgcgggtcgaggctgctgatgttaatggttatcgggcaattcatgttgcatctcagtatggacaaacagcttttgtaaatcacattgttgcgaagtatcatgcggaccttaatgtaccagataatgatgggaggagccctcttcactgggctgcatacaagggatttggtgatacaatcaggttacttctattcagagatgctttccaagggagacaagataaagatggttgcactcctttgcattgggcagcattaagaggaaatgcagaggcttgcactttacttgtacatgcaggcacaaaggaggatttaacagtaaaagataatgcaggacttactcctgcagagcttgcatctgataaaggtcatctgcaaatagcacgtatactttctaatgcccagcggtcacagagaaagcagtggaaagacgagacttgccctgctaaaatggggcataaaggctatgctccaattctattctccgttgttgttgtcaacgtcattcttttcatcagttcagtcctcttcgctcctggtcttacaaaagttactgctgttgtcgcactttggggatggactgctgtttccctggcagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="111411" stop="116405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111711" g_stop="111774" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111775" i_stop="111869" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111870" g_stop="112010" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="205" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112011" i_stop="112764" i_length="754">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112765" g_stop="112877" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="318" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112878" i_stop="114354" i_length="1477">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114355" g_stop="114434" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="398" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114435" i_stop="115496" i_length="1062">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115497" g_stop="115660" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="562" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115661" i_stop="115806" i_length="146">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115807" g_stop="115945" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="701" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="115946" i_stop="116035" i_length="90">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="116036" g_stop="116101" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="767" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E212082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111711" e_stop="111774"/>
          <exon e_start="111870" e_stop="112010"/>
          <exon e_start="112765" e_stop="112877"/>
          <exon e_start="114355" e_stop="114434"/>
          <exon e_start="115497" e_stop="115660"/>
          <exon e_start="115807" e_stop="115945"/>
          <exon e_start="116036" e_stop="116101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTACGCGCTTCAATGGGCTGCTCTCAACAATTTCGCTGATATTGTTCAATATATCATCGAGGTATTATTATTTGCCTTTTTATTAAATGAGGGTCGAGTTTTTAATTGTTCATTTGGAAGTCAAGTATGGTGTTTTTTTATTTGTGGTATGTGTAGCACGGGGGAAATGTCCACGCGGCCGACAATTCGGGACAGACTGCGTTGCATTGGGCGGCAGTGCGGGGATCAATTGCAGCTGCCGATGTGTTGTTGCAGAATGGTGCGCGGGTCGAGGCTGCTGATGTTAATGGTTATCGGGTAATATATAATACTTGCTGTTCATTTGTAATGTTCAACTATTCATAATTTCGGTATTATTGTTGTCATTTTCAAATCCATCTGTATAAGTTGGTATTTGCAATACAAGATGTGGTTAAACTTTCTAATGTCCTTAGTCTCCTCGCCGTTTAGGCTAAGCTGGAACTATGTTTTTTGCATTGGTTCCATGATGGAACTGATACCACTGTCAGGTCTCTGTGTAGCTTCCAGAACATCCAAGTTGGATGCAACAGAATTAATAAAGTTTCTAATTGTTTTTCTTAACGAGTGAGTGCCATAGGCTTGTAGCTGAAAACCCATAGGTGAAAACCTAAAAGAGAATTTGGTTCAAACTTTGAATTAAAAGGACTATGTTTTGTTTGTTTATTTAGTCTCCAAGTATAAGGTTTCAATGAAATAAATGATCCATCACCTGTTCTTGTATCGGCAGGTACACTTGGTGCAGATGGATTTTACAGAACCTCTCCCTTAATTATTCCTAAATTCTTTTTATCCAAGTTTCATAATCAGTTACAGGCTTCTTGTTCTCATGCTTCCTCTTGACCATTATTCATCTTCTTCCATTTTCCCTGACCTAGAGTCCATGCTAGATTTTATTACATAATTCAAAAATTGTCAGTGTGAAATCCTGATTTTAGAACCTTCTAGAAACTAATTTTCTTGGATAAGGCTATCCTTGAAGGTTGTTTTTTCAGTTATATCAACTGTTGAAGTATGTGTACTTCCTTTACAGGCAATTCATGTTGCATCTCAGTATGGACAAACAGCTTTTGTAAATCACATTGTTGCGAAGTATCATGCGGACCTTAATGTACCAGATAATGATGGGAGGAGCCCTCTTCACTGGTATGATTAGCACCCCCAGCATTTATAGACTTATAGTTTGAGTTTTCGGTTTTGAGTTGAAACTCCATCATCTTCTCGATTTTTAAGTGACAAATCTCCCATGACTCTTTGATATATTTTGGTTCTGATCTCTGGATGTGCTTGTGGTCTGTGTAAGTTTCATGGCAAGTTCACTTATAGTTTTCTTGGGACTGAAATTATCCTTCTACGTATAGATATTTCTTCTTGCCTTGCCTGAGATCTGGCTACTTCCCCAACCACGAGTACTTAATAAACAGACAAATTCCAAAATATTTCCCTCTTTTGTTCTCAGTTTTTTAATTTTAGTCTTATGTATCTCACTGAACAATTGTAAAGAAACTAATTATTTTGGATGCCATTTTCAGCTGGCTTCGGGCAGTCTAGGTAAAGTTAATTAAGTATGTGACGTGAACATGAGAACTTTAAGCGTCAACTATTTTATATATGTTAAACCAAGATCTTAGGAGAAGATCCTGTACCATTCTAAGTAGAAGATATACACCATCGGTGAGCAAAAATGTGGAAGTTTTACATGTCCATGGGAGTTGCTCTAGCCTTGGTTACATGTAGAAATACTAAGACTATCAGATCACAACACAAAAACAAACTCCATATATTTCATATATACCACTATCACATATAATAGATTCCAGTAATTCAACATACAATAGAAAGTACAAAAATAATTCTGATGACTAAAAAGGTTGTAAACACTACACTGTGCTAGATCTGATAAGGATATGCGTTCCTCTTCCTTTCTGATTTCACATTGTTCGAATAAAGGAGTTGATAGGCTATTTGGTCAGAAATTCGTTTCTTACATAGTAACTCCCAAACTTCTTTAAAAGATCCCATTTAATAAACTACACGGAAAACTGGGGAAGAAGTGTTGTCTTTTAGTTGTAGAGTGGAGAGTAAAGTGGTGAACATCCAACTCGGTAGATTGGTGTTGCACAGGTCTTAGTGGTGTGTTACATCAGGACTCAAGTATGGCGTCGATATGTGAAGTTTGATGTCCGTGTTTTCTAGCTTTGGTTATAGCTGGATTGGTAATTTTCCCTCTTTATTTATGCTTGCTCCTAACTTCCTATTAGTAGTGTCATCTTAACAAGTCTAAACTGCGAGACTGTATCATTGTTTGACATTGTATACCACTCTTGATTCTGATTTAGTTTTTAGTTTTCAAGCTTTGGTGTTCCTTTCTACTCTCAGTATCTTAAATCTTTTATTCCTGGTATTGCATGCAATTTGGGGCGTTCCTCATTCCCTATTGGACATTGAAAATTTTGTTTTTGTCAAACGGAAGGCAGAGTTCTTGCCCTCTGGTGTTGGTTTGTGTAATTTAAAAATGAATGTTTTACTAGTTGATCTTCATGATAGTTCTTTATATTGTTATCTCATTTCTTTGCTGAAGTTATCCATTATTATAAGCATTTTCTCTGGTATTTCCAACTAGGGCTGCATACAAGGGATTTGGTGATACAATCAGGTTACTTCTATTCAGAGATGCTTTCCAAGGGAGACAAGATAAAGATGGTATGTTCATAATGAATGTACCATTTTCTTAAATTCCCTTGGTGTAAATGTAATGCTTTTGTGAGTTGGGGATTTTGCTTATGAATGTGGCCTTCCAATCATAGTCATTAATTATGATAATTTGATGGAAATGGAAATAATAGATGCAGCATTGAAGTTGGTTTTTTCCATTGTTAGTGTTGCTTCAATAGTCTATGTTATCCAATAGTTATGGTTGTGTAGTAATGTCTTGCAAAAAATGCTTGTGTAAATATGATATGCAAGTTGCAGTCTCTAATAATTTCTTCTCTCGTCTAAGTTTGATTACAGGTGGAGATTCTAAGCATCTTATTAGTAGTTTGTTTTCTGGTGCTTCTTTTAATAAAATGATGGTCTACATAAATTTTACACTTCGCTAAAGGAATGATTTCGTGTTTTGTTAGTTCTGGGGAAACTTCTGTTTAGCAGTAAAAAGCAACAGTTCGGATTGGGGTCTAAATGTCCCTCCTTTTGCTTGAAGCTTCATAATCAATGGACAGAAAGAAAGTAACATTGCAGGGCTTTTTGTGAAGAATTTATATTGGCTGTCAAGAGTATATACTCAGTGGAGAATGAAATCGAGAACTCCTTTGAGCAAATCTCTTTTTGTTGATACGTTGAAATCAAGTGGGATTTTATTTGTTTTCTGGGATGAACCTTTGGAAGAGGAAGACTTAGAATATAGTTTGTGGTTTTTTCCCTCCTTTTGTTGTGGGATTGCTTATCATTCTTCCATTAATGTATGGGTGCTGTATTTCCATTTTGCAGCATTCTAAGATTTTGGCATGGTCATATCTGAAAGTTTGGGAATAAGTGTCCACTGGCTTCATGTGTTTTTTAATTGCTCATTTTTTCCTCGGGGGTGTTCTGACCATAACTGATGTGAATAATACTTTTCCTGGAAGAGGTTTTGGTTGATCTTATTTTTCAAATAAATTTTACTGTTTGACCGTGATAATTGCTATCTAAATACATCCGGGCGCCAAATTATTATTTAGAGCCACAAACATAGTTGCATAATGCTGATACTTCAAAGGTTTGCAGGTTGCACTCCTTTGCATTGGGCAGCATTAAGAGGAAATGCAGAGGCTTGCACTTTACTTGTACATGCAGGCACAAAGGAGGATTTAACAGTAAAAGATAATGCAGGACTTACTCCTGCAGAGCTTGCATCTGATAAAGGTCATCTGCAAATAGCACGTATACTTGTAGGTAACTCTTTTTATAGAAATTATGTTATCTGTAATCTTACTATTTTCAAGTACCATGCTGATGTTCCTCTCTATCGTTCTGCAATTACTGTTTCTCATTTTTGTAGCATCTGAATGACAGTTTGCAATTCAATGTTGTGCAGTCTAATGCCCAGCGGTCACAGAGAAAGCAGTGGAAAGACGAGACTTGCCCTGCTAAAATGGGGCATAAAGGCTATGCTCCAATTCTATTCTCCGTTGTTGTTGTCAACGTCATTCTTTTCATCAGTTCAGTCCTCTTCGGTGGGTGATGGTACTTCTAGTGGTATTTCTTTTTGTTCTTGTAATTGGAGGCACCACTTGCTAATTGTTGCTGGATCTTGTTTTTGCTAGCTCCTGGTCTTACAAAAGTTACTGCTGTTGTCGCACTTTGGGGATGGACTGCTGTTTCCCTGGCAG</genome_strand>
        <mrna_strand>ATATTACGCGCTTCAATGGGCTGCTCTCAACAATTTCGCTGATATTGTTCAATATATCATCGAG...............................................................................................CACGGGGGAAATGTCCACGCGGCCGACAATTCGGGACAGACTGCGTTGCATTGGGCGGCAGTGCGGGGATCAATTGCAGCTGCCGATGTGTTGTTGCAGAATGGTGCGCGGGTCGAGGCTGCTGATGTTAATGGTTATCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTCATGTTGCATCTCAGTATGGACAAACAGCTTTTGTAAATCACATTGTTGCGAAGTATCATGCGGACCTTAATGTACCAGATAATGATGGGAGGAGCCCTCTTCACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCATACAAGGGATTTGGTGATACAATCAGGTTACTTCTATTCAGAGATGCTTTCCAAGGGAGACAAGATAAAGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCACTCCTTTGCATTGGGCAGCATTAAGAGGAAATGCAGAGGCTTGCACTTTACTTGTACATGCAGGCACAAAGGAGGATTTAACAGTAAAAGATAATGCAGGACTTACTCCTGCAGAGCTTGCATCTGATAAAGGTCATCTGCAAATAGCACGTATACTT..................................................................................................................................................TCTAATGCCCAGCGGTCACAGAGAAAGCAGTGGAAAGACGAGACTTGCCCTGCTAAAATGGGGCATAAAGGCTATGCTCCAATTCTATTCTCCGTTGTTGTTGTCAACGTCATTCTTTTCATCAGTTCAGTCCTCTTCG..........................................................................................CTCCTGGTCTTACAAAAGTTACTGCTGTTGTCGCACTTTGGGGATGGACTGCTGTTTCCCTGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588833" ref_strand="+" ref_description="SGN-E588833 [42395]">
      <seq>tgccttaatgtaccagataatgatgggaggagccctcttcactgggctgcatacaatggatttggtgatacaattaggttacttctattcagagatgctttccaagggagacaagataaagatggttgcactcctttgcattgggcagcattaagaggaaatgcagaggcttgcactttacttgtacatgcaggcacaaaggaggaattaacagtcaaagataatgcaggacttactcctgcagagcttgcatctgataaaggtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="112536" stop="115939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112834" g_stop="112877" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112878" i_stop="114354" i_length="1477">
            <donor d_prob="0.985" d_score="0.95"/>
            <acceptor a_prob="0.956" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114355" g_stop="114434" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="124" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114435" i_stop="115496" i_length="1062">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115497" g_stop="115639" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="267" r_length="143" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E588833" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112834" e_stop="112877"/>
          <exon e_start="114355" e_stop="114434"/>
          <exon e_start="115497" e_stop="115639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTTAATGTACCAGATAATGATGGGAGGAGCCCTCTTCACTGGTATGATTAGCACCCCCAGCATTTATAGACTTATAGTTTGAGTTTTCGGTTTTGAGTTGAAACTCCATCATCTTCTCGATTTTTAAGTGACAAATCTCCCATGACTCTTTGATATATTTTGGTTCTGATCTCTGGATGTGCTTGTGGTCTGTGTAAGTTTCATGGCAAGTTCACTTATAGTTTTCTTGGGACTGAAATTATCCTTCTACGTATAGATATTTCTTCTTGCCTTGCCTGAGATCTGGCTACTTCCCCAACCACGAGTACTTAATAAACAGACAAATTCCAAAATATTTCCCTCTTTTGTTCTCAGTTTTTTAATTTTAGTCTTATGTATCTCACTGAACAATTGTAAAGAAACTAATTATTTTGGATGCCATTTTCAGCTGGCTTCGGGCAGTCTAGGTAAAGTTAATTAAGTATGTGACGTGAACATGAGAACTTTAAGCGTCAACTATTTTATATATGTTAAACCAAGATCTTAGGAGAAGATCCTGTACCATTCTAAGTAGAAGATATACACCATCGGTGAGCAAAAATGTGGAAGTTTTACATGTCCATGGGAGTTGCTCTAGCCTTGGTTACATGTAGAAATACTAAGACTATCAGATCACAACACAAAAACAAACTCCATATATTTCATATATACCACTATCACATATAATAGATTCCAGTAATTCAACATACAATAGAAAGTACAAAAATAATTCTGATGACTAAAAAGGTTGTAAACACTACACTGTGCTAGATCTGATAAGGATATGCGTTCCTCTTCCTTTCTGATTTCACATTGTTCGAATAAAGGAGTTGATAGGCTATTTGGTCAGAAATTCGTTTCTTACATAGTAACTCCCAAACTTCTTTAAAAGATCCCATTTAATAAACTACACGGAAAACTGGGGAAGAAGTGTTGTCTTTTAGTTGTAGAGTGGAGAGTAAAGTGGTGAACATCCAACTCGGTAGATTGGTGTTGCACAGGTCTTAGTGGTGTGTTACATCAGGACTCAAGTATGGCGTCGATATGTGAAGTTTGATGTCCGTGTTTTCTAGCTTTGGTTATAGCTGGATTGGTAATTTTCCCTCTTTATTTATGCTTGCTCCTAACTTCCTATTAGTAGTGTCATCTTAACAAGTCTAAACTGCGAGACTGTATCATTGTTTGACATTGTATACCACTCTTGATTCTGATTTAGTTTTTAGTTTTCAAGCTTTGGTGTTCCTTTCTACTCTCAGTATCTTAAATCTTTTATTCCTGGTATTGCATGCAATTTGGGGCGTTCCTCATTCCCTATTGGACATTGAAAATTTTGTTTTTGTCAAACGGAAGGCAGAGTTCTTGCCCTCTGGTGTTGGTTTGTGTAATTTAAAAATGAATGTTTTACTAGTTGATCTTCATGATAGTTCTTTATATTGTTATCTCATTTCTTTGCTGAAGTTATCCATTATTATAAGCATTTTCTCTGGTATTTCCAACTAGGGCTGCATACAAGGGATTTGGTGATACAATCAGGTTACTTCTATTCAGAGATGCTTTCCAAGGGAGACAAGATAAAGATGGTATGTTCATAATGAATGTACCATTTTCTTAAATTCCCTTGGTGTAAATGTAATGCTTTTGTGAGTTGGGGATTTTGCTTATGAATGTGGCCTTCCAATCATAGTCATTAATTATGATAATTTGATGGAAATGGAAATAATAGATGCAGCATTGAAGTTGGTTTTTTCCATTGTTAGTGTTGCTTCAATAGTCTATGTTATCCAATAGTTATGGTTGTGTAGTAATGTCTTGCAAAAAATGCTTGTGTAAATATGATATGCAAGTTGCAGTCTCTAATAATTTCTTCTCTCGTCTAAGTTTGATTACAGGTGGAGATTCTAAGCATCTTATTAGTAGTTTGTTTTCTGGTGCTTCTTTTAATAAAATGATGGTCTACATAAATTTTACACTTCGCTAAAGGAATGATTTCGTGTTTTGTTAGTTCTGGGGAAACTTCTGTTTAGCAGTAAAAAGCAACAGTTCGGATTGGGGTCTAAATGTCCCTCCTTTTGCTTGAAGCTTCATAATCAATGGACAGAAAGAAAGTAACATTGCAGGGCTTTTTGTGAAGAATTTATATTGGCTGTCAAGAGTATATACTCAGTGGAGAATGAAATCGAGAACTCCTTTGAGCAAATCTCTTTTTGTTGATACGTTGAAATCAAGTGGGATTTTATTTGTTTTCTGGGATGAACCTTTGGAAGAGGAAGACTTAGAATATAGTTTGTGGTTTTTTCCCTCCTTTTGTTGTGGGATTGCTTATCATTCTTCCATTAATGTATGGGTGCTGTATTTCCATTTTGCAGCATTCTAAGATTTTGGCATGGTCATATCTGAAAGTTTGGGAATAAGTGTCCACTGGCTTCATGTGTTTTTTAATTGCTCATTTTTTCCTCGGGGGTGTTCTGACCATAACTGATGTGAATAATACTTTTCCTGGAAGAGGTTTTGGTTGATCTTATTTTTCAAATAAATTTTACTGTTTGACCGTGATAATTGCTATCTAAATACATCCGGGCGCCAAATTATTATTTAGAGCCACAAACATAGTTGCATAATGCTGATACTTCAAAGGTTTGCAGGTTGCACTCCTTTGCATTGGGCAGCATTAAGAGGAAATGCAGAGGCTTGCACTTTACTTGTACATGCAGGCACAAAGGAGGATTTAACAGTAAAAGATAATGCAGGACTTACTCCTGCAGAGCTTGCATCTGATAAAGGTCAT</genome_strand>
        <mrna_strand>TGCCTTAATGTACCAGATAATGATGGGAGGAGCCCTCTTCACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCATACAATGGATTTGGTGATACAATTAGGTTACTTCTATTCAGAGATGCTTTCCAAGGGAGACAAGATAAAGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCACTCCTTTGCATTGGGCAGCATTAAGAGGAAATGCAGAGGCTTGCACTTTACTTGTACATGCAGGCACAAAGGAGGAATTAACAGTCAAAGATAATGCAGGACTTACTCCTGCAGAGCTTGCATCTGATAAAGGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453877" ref_strand="+" ref_description="SGN-E453877 [cSTS-21-O6]">
      <seq>tgggttctttgacatctataattggtgcctgcagttgctcttcaaagaatttggaccatcagtacccattgttggtagccgatgaatcgtggttaccatcatgttttctttgcgtatcctggtgtaatcgcttttctgttcatggatggggctattctaattgcttctgtaactctctgtgtaatacagatatcccagatagctcggaatctcacaacaaatgagatggcaaatgctgtgagaatatggttatcttcgtggtccagatgggaggttccgaaatccctataaccatggatgtcgaaagaattgctctgatttccttatcaatggttacacaaatgatgatgagatagcatggccaccattgcagcacgtcgcaagctagcagcatttgtaatccctgcttgctaaaggatgcatatataaccagacccctccaggctccaggtgacctcttcagtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="117865" stop="119645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118165" g_stop="118209" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118210" i_stop="118325" i_length="116">
            <donor d_prob="0.971" d_score="0.89"/>
            <acceptor a_prob="0.984" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118326" g_stop="118474" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="198" r_length="152" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118475" i_stop="119083" i_length="609">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119084" g_stop="119327" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="443" r_length="245" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E453877" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118165" e_stop="118209"/>
          <exon e_start="118326" e_stop="118474"/>
          <exon e_start="119084" e_stop="119327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTTCATTGACATCTATAATTGGTG-CTGCGATTGCTCTTCAAAGTATGTTAAAAGCACTTTATCTTTAACATCAATAGTCTTTAGAATGCTACTGCTAGCATATCTAATAAAGTGATACTGGGTTGTTTAAGACAGTTGAAACCGTTTACCTCTTGCAGGAATTTGGA-CATCAGTA-CCATTGTTGGTAGCTGATGAATCGTGGTTA-CATCATGTTTTCTTTGCGTATCCTGGTATAATCGCTTTTCTGTTCATGGATGGGGTTATTCTAATTGCTTCTGTAACTCTCTGTGTAATACAGATATCCCAGGTATAGATTAGATTTCTTGGTTTTCTTGTCCTTCTTAATCATTAAGCAACTGAAGCCTATGGTTAGCTCGCTCATGAAAAAATGCGCTTGAAAGGGAATGAAATTCCGCAAAACTAGTTTAGTATGAATGAACCTAACCCTATATGTATCAACAGTTGTATACTTGCTTCTGAAACCACTGTAGGTGAATTATTAAGCACTCAAGAGTTTCCAAGGAAATTTAAGTTTAGTTGCCTCGTCTTCTAGTGTTAATAGTGAATTTGGAGCTATACTCAGTAAGATCGTTGATTGTTTAAACAGTTCTTGACATACATGAAACAAGTTCGAACGTCTTTGATGCACTGGTGCTGTATATGGAATCTGTGGGTAGTCCTTTACGCAGTCGAACTTTACTGACATGAATTCATCTATTGTGAAAACTTTTAAAAGAGTAAAGAGGAGGCTGGGGTTTATGTATCGGCTACCCTCATCTTTATGAGGGATTTAGTAACTTGCTATAGTATTTAAGAGATGAATGTATCTCTGTATGGCATCAGTACTGTAATGCAGAGGAGCTTTCCTTTATGAAACTCTTGTAATTGACACTATGAACCTTTTTGTTCCATGCAGATAGCTCGGAATCTCACAACAAATGAGATGGCAAATGCTGTGAG-ATATGGTTATCTTCGTGGTCCAGATGGGAGGTTCCGAAATCCCTATAACCATGGATGTCGGAAGAATTGCTCTGACTTCCTTATCAATGGTTACACAAATGATGATGAGATAGCATGGCCACCATTGCAGCATGCCGCGAGCTAGCAGCATTTACAATCCCTGCTTGCTAAAGGATGCATATGTTACCAGACCCCTCTAG</genome_strand>
        <mrna_strand>TGGGTTCTTTGACATCTATAATTGGTGCCTGCAGTTGCTCTTCAAA....................................................................................................................GAATTTGGACCATCAGTACCCATTGTTGGTAGCCGATGAATCGTGGTTACCATCATGTTTTCTTTGCGTATCCTGGTGTAATCGCTTTTCTGTTCATGGATGGGGCTATTCTAATTGCTTCTGTAACTCTCTGTGTAATACAGATATCCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTCGGAATCTCACAACAAATGAGATGGCAAATGCTGTGAGAATATGGTTATCTTCGTGGTCCAGATGGGAGGTTCCGAAATCCCTATAACCATGGATGTCGAAAGAATTGCTCTGATTTCCTTATCAATGGTTACACAAATGATGATGAGATAGCATGGCCACCATTGCAGCACGTCGCAAGCTAGCAGCATTTGTAATCCCTGCTTGCTAAAGGATGCATATATAACCAGACCCCTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374448" ref_strand="+" ref_description="SGN-E374448 [TUS-38-J4](-)">
      <seq>gacatcagtaccattgttggtagctgatgaatcgtggttacatcatgttttctttgcgtatcctggtataatcgcttttctgttcatggatggggttattctaattgcttctgtaactctctgtgtaatacagatatcccagatagctcggaatctcacaacaaatgagatggcaaatgctgtgagatatggttatcttcgtggtccagatgggaggttccgaaatccctataaccatggatgtcggaagaattgctctgacttccttatcaatggttacacaaatgatgatgagatagcatggccaccattgcagcatgccgcgagctagcagcatttacaatccctgcttgctaaaggatgcatatgttaccagacccctctaggtgacctcttcagtgtttgtgaaggatactaggggctcttgtttattttgagtctcccaatgtaccaaaagaaaagaaaatgtaggggcctctggtttatttatattgtaaaaaactatatcatcccaaaaaaatataagggggaaatctgcaactcttgctgcattggtgttctttgtacatctttacatatcaacgttcgagtgatgtgaagactttcggtaattaatgggagtataaggggaatatgtgtattattataaagaagaaatgttactgtaattttatttcatactctagttaccgctatgtacaacaattacaaaaatattcttttaacgttacttgaatatccaatattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="118033" stop="119989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118333" g_stop="118474" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118475" i_stop="119083" i_length="609">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119084" g_stop="119698" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="757" r_length="615" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E374448" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118333" e_stop="118474"/>
          <exon e_start="119084" e_stop="119698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATCAGTACCATTGTTGGTAGCTGATGAATCGTGGTTACATCATGTTTTCTTTGCGTATCCTGGTATAATCGCTTTTCTGTTCATGGATGGGGTTATTCTAATTGCTTCTGTAACTCTCTGTGTAATACAGATATCCCAGGTATAGATTAGATTTCTTGGTTTTCTTGTCCTTCTTAATCATTAAGCAACTGAAGCCTATGGTTAGCTCGCTCATGAAAAAATGCGCTTGAAAGGGAATGAAATTCCGCAAAACTAGTTTAGTATGAATGAACCTAACCCTATATGTATCAACAGTTGTATACTTGCTTCTGAAACCACTGTAGGTGAATTATTAAGCACTCAAGAGTTTCCAAGGAAATTTAAGTTTAGTTGCCTCGTCTTCTAGTGTTAATAGTGAATTTGGAGCTATACTCAGTAAGATCGTTGATTGTTTAAACAGTTCTTGACATACATGAAACAAGTTCGAACGTCTTTGATGCACTGGTGCTGTATATGGAATCTGTGGGTAGTCCTTTACGCAGTCGAACTTTACTGACATGAATTCATCTATTGTGAAAACTTTTAAAAGAGTAAAGAGGAGGCTGGGGTTTATGTATCGGCTACCCTCATCTTTATGAGGGATTTAGTAACTTGCTATAGTATTTAAGAGATGAATGTATCTCTGTATGGCATCAGTACTGTAATGCAGAGGAGCTTTCCTTTATGAAACTCTTGTAATTGACACTATGAACCTTTTTGTTCCATGCAGATAGCTCGGAATCTCACAACAAATGAGATGGCAAATGCTGTGAGATATGGTTATCTTCGTGGTCCAGATGGGAGGTTCCGAAATCCCTATAACCATGGATGTCGGAAGAATTGCTCTGACTTCCTTATCAATGGTTACACAAATGATGATGAGATAGCATGGCCACCATTGCAGCATGCCGCGAGCTAGCAGCATTTACAATCCCTGCTTGCTAAAGGATGCATATGTTACCAGACCCCTCTAGGTGACCTCTTCAGTGTTTGTGAAGGATACTAGGGGCTCTTGTTTATTTTGAGTCTCCCAATGTACCAAAAGAAAAGAAAATGTAGGGGCCTCTGGTTTATTTATATTGTAAAAAACTATATCATCCCAAAAAAATATAAGGGGGAAATCTGCAACTCTTGCTGCATTGGTGTTCTTTGTACATCTTTACATATCAACGTTCGAGTGATGTGAAGACTTTCGGTAATTAATGGGAGTATAAGGGGAATATGTGTATTATTATAAAGAAGAAATGTTACTGTAATTTTATTTCATACTCTAGTTACCGCTATGTACAACAATTACAAAAATATTCTTTTAACGTTACTTGAATATCCAATATTACTGTAGGGG</genome_strand>
        <mrna_strand>GACATCAGTACCATTGTTGGTAGCTGATGAATCGTGGTTACATCATGTTTTCTTTGCGTATCCTGGTATAATCGCTTTTCTGTTCATGGATGGGGTTATTCTAATTGCTTCTGTAACTCTCTGTGTAATACAGATATCCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTCGGAATCTCACAACAAATGAGATGGCAAATGCTGTGAGATATGGTTATCTTCGTGGTCCAGATGGGAGGTTCCGAAATCCCTATAACCATGGATGTCGGAAGAATTGCTCTGACTTCCTTATCAATGGTTACACAAATGATGATGAGATAGCATGGCCACCATTGCAGCATGCCGCGAGCTAGCAGCATTTACAATCCCTGCTTGCTAAAGGATGCATATGTTACCAGACCCCTCTAGGTGACCTCTTCAGTGTTTGTGAAGGATACTAGGGGCTCTTGTTTATTTTGAGTCTCCCAATGTACCAAAAGAAAAGAAAATGTAGGGGCCTCTGGTTTATTTATATTGTAAAAAACTATATCATCCCAAAAAAATATAAGGGGGAAATCTGCAACTCTTGCTGCATTGGTGTTCTTTGTACATCTTTACATATCAACGTTCGAGTGATGTGAAGACTTTCGGTAATTAATGGGAGTATAAGGGGAATATGTGTATTATTATAAAGAAGAAATGTTACTGTAATTTTATTTCATACTCTAGTTACCGCTATGTACAACAATTACAAAAATATTCTTTTAACGTTACTTGAATATCCAATATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242927" ref_strand="+" ref_description="SGN-E242927 [cLED-31-D15]">
      <seq>ttctaattgcttctgtaactctctgtgtaatacagatatcccagatagctcggaatctcacaacaaatgagatggcaaatgctgtgagatatggttatcttcgtggtccagatgggaggttccgaaatccctataaccatggatgtcggaagaattgctctgacttccttatcaatggttacacaaatgatgatgagatagcatggccaccattgcagcatgccgcgagctagcagcatttacaatccctgcttgctaaaggatgcatatgttaccagacccctctaggtgacctcttcagtgtttgtgaaggatactaggggctcttgtttattttgagtctcccaatgtaccaaaagaaaagaaaatgtaggggcctctggtttatttatattgtaaaaaactatatcatcccaaaaaaatataagggggaaatctgcaactcttgctgcattggtgttctttgtacatctttacatatcaacgttcgagtgatgtgaagactttcggtaattaatgggagtataaggggaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="118131" stop="119876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118431" g_stop="118474" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118475" i_stop="119083" i_length="609">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119084" g_stop="119576" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="537" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E242927" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118431" e_stop="118474"/>
          <exon e_start="119084" e_stop="119576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAATTGCTTCTGTAACTCTCTGTGTAATACAGATATCCCAGGTATAGATTAGATTTCTTGGTTTTCTTGTCCTTCTTAATCATTAAGCAACTGAAGCCTATGGTTAGCTCGCTCATGAAAAAATGCGCTTGAAAGGGAATGAAATTCCGCAAAACTAGTTTAGTATGAATGAACCTAACCCTATATGTATCAACAGTTGTATACTTGCTTCTGAAACCACTGTAGGTGAATTATTAAGCACTCAAGAGTTTCCAAGGAAATTTAAGTTTAGTTGCCTCGTCTTCTAGTGTTAATAGTGAATTTGGAGCTATACTCAGTAAGATCGTTGATTGTTTAAACAGTTCTTGACATACATGAAACAAGTTCGAACGTCTTTGATGCACTGGTGCTGTATATGGAATCTGTGGGTAGTCCTTTACGCAGTCGAACTTTACTGACATGAATTCATCTATTGTGAAAACTTTTAAAAGAGTAAAGAGGAGGCTGGGGTTTATGTATCGGCTACCCTCATCTTTATGAGGGATTTAGTAACTTGCTATAGTATTTAAGAGATGAATGTATCTCTGTATGGCATCAGTACTGTAATGCAGAGGAGCTTTCCTTTATGAAACTCTTGTAATTGACACTATGAACCTTTTTGTTCCATGCAGATAGCTCGGAATCTCACAACAAATGAGATGGCAAATGCTGTGAGATATGGTTATCTTCGTGGTCCAGATGGGAGGTTCCGAAATCCCTATAACCATGGATGTCGGAAGAATTGCTCTGACTTCCTTATCAATGGTTACACAAATGATGATGAGATAGCATGGCCACCATTGCAGCATGCCGCGAGCTAGCAGCATTTACAATCCCTGCTTGCTAAAGGATGCATATGTTACCAGACCCCTCTAGGTGACCTCTTCAGTGTTTGTGAAGGATACTAGGGGCTCTTGTTTATTTTGAGTCTCCCAATGTACCAAAAGAAAAGAAAATGTAGGGGCCTCTGGTTTATTTATATTGTAAAAAACTATATCATCCCAAAAAAATATAAGGGGGAAATCTGCAACTCTTGCTGCATTGGTGTTCTTTGTACATCTTTACATATCAACGTTCGAGTGATGTGAAGACTTTCGGTAATTAATGGGAGTATAAGGGGAATAT</genome_strand>
        <mrna_strand>TTCTAATTGCTTCTGTAACTCTCTGTGTAATACAGATATCCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTCGGAATCTCACAACAAATGAGATGGCAAATGCTGTGAGATATGGTTATCTTCGTGGTCCAGATGGGAGGTTCCGAAATCCCTATAACCATGGATGTCGGAAGAATTGCTCTGACTTCCTTATCAATGGTTACACAAATGATGATGAGATAGCATGGCCACCATTGCAGCATGCCGCGAGCTAGCAGCATTTACAATCCCTGCTTGCTAAAGGATGCATATGTTACCAGACCCCTCTAGGTGACCTCTTCAGTGTTTGTGAAGGATACTAGGGGCTCTTGTTTATTTTGAGTCTCCCAATGTACCAAAAGAAAAGAAAATGTAGGGGCCTCTGGTTTATTTATATTGTAAAAAACTATATCATCCCAAAAAAATATAAGGGGGAAATCTGCAACTCTTGCTGCATTGGTGTTCTTTGTACATCTTTACATATCAACGTTCGAGTGATGTGAAGACTTTCGGTAATTAATGGGAGTATAAGGGGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372449" ref_strand="+" ref_description="SGN-E372449 [TUS-32-M12](-)">
      <seq>ttgtcactacagtgtcaacgattcaactttggaggatctgttaccgtacttgaagagcaagggtgtgggagtgatcagtgcttctcctctttcaatgggtcttcttactgaggctggtggtcccgagtggcaccctgcttcttctgaacttaaggctgcctgccgtgctgctgctgatcactgcaaaggaaagggaaagaatatctcaaaattagccttgcagtacagcttagcaaataccgacatttcttccatactagtggggatgaagtctgttaaagaggttgaggaaaatatagcagctgccctagaagtagcaacgactggaatggacgaagaagcattatcagagatcacagacattctgaaaccagtgaagaatcagacatggcctagcggtatccaacaaagttgatttgtttgtcagttcaacgaggtcttgtgaattgtgatctcctgttgtgcatgttttatttgcacttggacatctaaaacaagttcaagtcgaaattgtatgttgtattcttcgagtttttacatatccaagttagaataatgaataaactttgcagtgttttaagtataggaggccagtttcgattgttaaatgccttttggaacctgtctaaacagagacatgtccagtttaccaaaaattactgtaatgttttagtttcgggtaccatatttgataattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="121549" stop="119458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121249" g_stop="121096" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121095" i_stop="120646" i_length="450">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120645" g_stop="120517" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="283" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120516" i_stop="120176" i_length="341">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120175" g_stop="119759" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="700" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E372449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121249" e_stop="121096"/>
          <exon e_start="120645" e_stop="120517"/>
          <exon e_start="120175" e_stop="119759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGAGGCTGGTGGTCCCGAGTGGCACCCTGCTTCTTCTGAACTTAAGGTTAATAATTCATTTTTCTCCCTTACTAATACTATCCCATAAGAGTATCGATTACTTGCTAAAAGTGCTCTGCTTTAGATTAGTTATGTTGTACCATCTCTACAATGTATTCATTTCTTCCCATCTGATCTGCCAATAGATGACGATTGAATATTTGGATATTGTACACAAACTAAAGTTTAAACTCCTTCAAGATAATATTGCATATTGAAATTACAAAACATAGAAGATGTCACTGAAATCAAGCACTTGACTTTTAAATCCATGGACAGCTTCCAACTTCTGATATTAGACGTCTTATTTTCAACTTGTGCTTGTTTGTATCCACTCTCCCAAAGTTGTTCTTCTCTCCACTCTTCAATGCTTCTTCCTGAATCTTCTCCCAAAATGAAACTGAGTGTTTTCTTATTTTTCTTACTCACTCAAATGTCTGCATATTTGCATCACCAGGCTGCCTGCCGTGCTGCTGCTGATCACTGCAAAGGAAAGGGAAAGAATATCTCAAAATTAGCCTTGCAGTACAGCTTAGCAAATACCGACATTTCTTCCATACTAGTGGGGATGAAGTCTGTTAAAGAGGTTATCTTTTTTCATCGATTTTTATCCTCTACATCTGATTCTTCATTTATAAATCCCATGTCATCTTTTGATATAATATTTTACATGTGTCACTAAAAAGGATTGGCTGGCTTTACTATGTTAATTTCATATAGCCCGACCTCAATTGATTATAAGGAATAGTTGATTGTTTGGTCGAGTACTAGTTAACTTGCAAGTCCTTTCTGCAAGTCTGCTTGATCTGGAAGCTTGATGAACATAAATTTGCAGCAAATGTCCGGCAATGATTATTTGAATGCCTAGCCCAAGCATCCTTGGTAAATGGCTTTATATTGATTTTTGTCATGATATATCTCTTGAAGGTTGAGGAAAATATAGCAGCTGCCCTAGAAGTAGCAACGACTGGAATGGACGAAGAAGCATTATCAGAGATCACAGACATTCTGAAACCAGTGAAGAATCAGACATGGCCTAGCGGTATCCAACAAAGTTGATTTGTTTGTCAGTTCAACGAGGTCTTGTGAATTGTGATCTCCTGTTGTGCATGTTTTATTTGCACTTGGACATCTAAAACAAGTTCAAGTCGAAATTGTATGTTGTATTCTTCGAGTTTTTACATATCCAAGTTAGAATAATGAATAAACTTTGCAGTGTTTTAAGTATAGGAGGCCAGTTTCGATTGTTAAATGCCTTTTGGAACCTGTCTAAACAGAGACATGTCCAGTTTACCAAAAATTACTGTAATGTTTTAGTTTCGGGTACCATATTTGATAATTCAA</genome_strand>
        <mrna_strand>TTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGAGGCTGGTGGTCCCGAGTGGCACCCTGCTTCTTCTGAACTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCTGCCGTGCTGCTGCTGATCACTGCAAAGGAAAGGGAAAGAATATCTCAAAATTAGCCTTGCAGTACAGCTTAGCAAATACCGACATTTCTTCCATACTAGTGGGGATGAAGTCTGTTAAAGAG.....................................................................................................................................................................................................................................................................................................................................................GTTGAGGAAAATATAGCAGCTGCCCTAGAAGTAGCAACGACTGGAATGGACGAAGAAGCATTATCAGAGATCACAGACATTCTGAAACCAGTGAAGAATCAGACATGGCCTAGCGGTATCCAACAAAGTTGATTTGTTTGTCAGTTCAACGAGGTCTTGTGAATTGTGATCTCCTGTTGTGCATGTTTTATTTGCACTTGGACATCTAAAACAAGTTCAAGTCGAAATTGTATGTTGTATTCTTCGAGTTTTTACATATCCAAGTTAGAATAATGAATAAACTTTGCAGTGTTTTAAGTATAGGAGGCCAGTTTCGATTGTTAAATGCCTTTTGGAACCTGTCTAAACAGAGACATGTCCAGTTTACCAAAAATTACTGTAATGTTTTAGTTTCGGGTACCATATTTGATAATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543008" ref_strand="-" ref_description="SGN-E543008 [TUS-64-J16]">
      <seq>tttggggatattcacttatgtgttggatcgcgtccctccaggcacagttgacgtcatcctgtcatattgtcactacagtgtcaacgattcaactttggaggatctgttaccgtacttgaagagcaagggtgtgggagtgatcagtgcttctcctctttcaatgggtcttcttactgaggctggtggtcccgagtggcaccctgcttcttctgaacttaaggctgcctgccgtgctgctgctgatcactgcaaaggaaagggaaagaatatctcaaaattagccttgcagtacagcttagcaaataccgacatttcttccatactagtggggatgaagtctgttaaagaggttgaggaaaatatagcagctgccctagaagtagcaacgactggaatggacgaagaagcattatcagagatcacagacattctgaaaccagtgaagaatcagacatggcctagcggtatccaacaaagttgatttgtttgtcagttcaacgaggtcttgtgaattgtgatctcctgttgtgcatgttttatttgcacttggacatctaaaacaagttcaagtcgaaattgtatgttgtattcttcgagtttttacatatccaagttagaataatgaaaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="121615" stop="119595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121315" g_stop="121096" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121095" i_stop="120646" i_length="450">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120645" g_stop="120517" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="349" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120516" i_stop="120176" i_length="341">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120175" g_stop="119900" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="625" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="626" polyA_stop="645"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E543008" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543008" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121315" e_stop="121096"/>
          <exon e_start="120645" e_stop="120517"/>
          <exon e_start="120175" e_stop="119900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGAGGCTGGTGGTCCCGAGTGGCACCCTGCTTCTTCTGAACTTAAGGTTAATAATTCATTTTTCTCCCTTACTAATACTATCCCATAAGAGTATCGATTACTTGCTAAAAGTGCTCTGCTTTAGATTAGTTATGTTGTACCATCTCTACAATGTATTCATTTCTTCCCATCTGATCTGCCAATAGATGACGATTGAATATTTGGATATTGTACACAAACTAAAGTTTAAACTCCTTCAAGATAATATTGCATATTGAAATTACAAAACATAGAAGATGTCACTGAAATCAAGCACTTGACTTTTAAATCCATGGACAGCTTCCAACTTCTGATATTAGACGTCTTATTTTCAACTTGTGCTTGTTTGTATCCACTCTCCCAAAGTTGTTCTTCTCTCCACTCTTCAATGCTTCTTCCTGAATCTTCTCCCAAAATGAAACTGAGTGTTTTCTTATTTTTCTTACTCACTCAAATGTCTGCATATTTGCATCACCAGGCTGCCTGCCGTGCTGCTGCTGATCACTGCAAAGGAAAGGGAAAGAATATCTCAAAATTAGCCTTGCAGTACAGCTTAGCAAATACCGACATTTCTTCCATACTAGTGGGGATGAAGTCTGTTAAAGAGGTTATCTTTTTTCATCGATTTTTATCCTCTACATCTGATTCTTCATTTATAAATCCCATGTCATCTTTTGATATAATATTTTACATGTGTCACTAAAAAGGATTGGCTGGCTTTACTATGTTAATTTCATATAGCCCGACCTCAATTGATTATAAGGAATAGTTGATTGTTTGGTCGAGTACTAGTTAACTTGCAAGTCCTTTCTGCAAGTCTGCTTGATCTGGAAGCTTGATGAACATAAATTTGCAGCAAATGTCCGGCAATGATTATTTGAATGCCTAGCCCAAGCATCCTTGGTAAATGGCTTTATATTGATTTTTGTCATGATATATCTCTTGAAGGTTGAGGAAAATATAGCAGCTGCCCTAGAAGTAGCAACGACTGGAATGGACGAAGAAGCATTATCAGAGATCACAGACATTCTGAAACCAGTGAAGAATCAGACATGGCCTAGCGGTATCCAACAAAGTTGATTTGTTTGTCAGTTCAACGAGGTCTTGTGAATTGTGATCTCCTGTTGTGCATGTTTTATTTGCACTTGGACATCTAAAACAAGTTCAAGTCGAAATTGTATGTTGTATTCTTCGAGTTTTTACATATCCAAGTTAGAATAATGA</genome_strand>
        <mrna_strand>TTTGGGGATATTCACTTATGTGTTGGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGAGGCTGGTGGTCCCGAGTGGCACCCTGCTTCTTCTGAACTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCTGCCGTGCTGCTGCTGATCACTGCAAAGGAAAGGGAAAGAATATCTCAAAATTAGCCTTGCAGTACAGCTTAGCAAATACCGACATTTCTTCCATACTAGTGGGGATGAAGTCTGTTAAAGAG.....................................................................................................................................................................................................................................................................................................................................................GTTGAGGAAAATATAGCAGCTGCCCTAGAAGTAGCAACGACTGGAATGGACGAAGAAGCATTATCAGAGATCACAGACATTCTGAAACCAGTGAAGAATCAGACATGGCCTAGCGGTATCCAACAAAGTTGATTTGTTTGTCAGTTCAACGAGGTCTTGTGAATTGTGATCTCCTGTTGTGCATGTTTTATTTGCACTTGGACATCTAAAACAAGTTCAAGTCGAAATTGTATGTTGTATTCTTCGAGTTTTTACATATCCAAGTTAGAATAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721178" ref_strand="+" ref_description="SGN-E721178 [FC13AA10]">
      <seq>gggcgattggcggccaaatcggccgaattgaaagccctaatatttacatcaatggcagctcagacattgcagctccgatcactgggcaacactggactcaaactcagctctgtcggcttcggcgcttcgcctctcggcaaggttttcggcgatgtctccgaacaagacgccttcgacgccgtccgggaagcctttcgcctcggtgtcaatttctttgatacttccccgtattatggaggaacattatcggaaaaggtactagggaaagctttgaaggctcttaaagtccctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactaaaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtccctcgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgtttcattggtataaccggcctacctttggggatattcacttatgtgcttgatcgcgtccctccaggcacagttgacgtcatcctgtcatattgtcactacagtgtcaacgattcaactttggaggatctgttaccgtacttgaagagcaagggtgtgggagtgatcagtgcttctcctctttcaatgggtcttcttactgaggctggtggtcccgagtggcaccctgcttcttctgaacttaaggctgcctgccgtgctgctgctgatcactgcaaaggaaagggaaagaatatctcaaaattagccttgcagtacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="122980" stop="120271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122680" g_stop="122479" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="227" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="456" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121096" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="756" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121095" i_stop="120646" i_length="450">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120645" g_stop="120571" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="831" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E721178" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122680" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121096"/>
          <exon e_start="120645" e_stop="120571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGAGGCTGGTGGTCCCGAGTGGCACCCTGCTTCTTCTGAACTTAAGGTTAATAATTCATTTTTCTCCCTTACTAATACTATCCCATAAGAGTATCGATTACTTGCTAAAAGTGCTCTGCTTTAGATTAGTTATGTTGTACCATCTCTACAATGTATTCATTTCTTCCCATCTGATCTGCCAATAGATGACGATTGAATATTTGGATATTGTACACAAACTAAAGTTTAAACTCCTTCAAGATAATATTGCATATTGAAATTACAAAACATAGAAGATGTCACTGAAATCAAGCACTTGACTTTTAAATCCATGGACAGCTTCCAACTTCTGATATTAGACGTCTTATTTTCAACTTGTGCTTGTTTGTATCCACTCTCCCAAAGTTGTTCTTCTCTCCACTCTTCAATGCTTCTTCCTGAATCTTCTCCCAAAATGAAACTGAGTGTTTTCTTATTTTTCTTACTCACTCAAATGTCTGCATATTTGCATCACCAGGCTGCCTGCCGTGCTGCTGCTGATCACTGCAAAGGAAAGGGAAAGAATATCTCAAAATTAGCCTTGCAGTACAGC</genome_strand>
        <mrna_strand>AATTGAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGAGGCTGGTGGTCCCGAGTGGCACCCTGCTTCTTCTGAACTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCTGCCGTGCTGCTGCTGATCACTGCAAAGGAAAGGGAAAGAATATCTCAAAATTAGCCTTGCAGTACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487081" ref_strand="+" ref_description="SGN-E487081 [cSTE-24-M13]">
      <seq>ctggactcaatctcagctctgtcggcttcggcgcttctcctctcggcaaggttttcggcgatgtctccgaacaagacgccttcgccgccgtccgggaagcctttcgcctcggcgtcaatttctttgacacttccccgtattatggaggaacgttatcggaaaaggtactagggaaagctttgaaggctcttggagtacctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactaaaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtccctcgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgcttcattggtataaccggcctacctttggggatattcacttatgtgcttgatcgcgtccctccaggcacagttgatgtcatcctgtcatattgtcactacagtgtcaacgattcaactttggaggatctgttaccatacctgaagagcaagggtgtgggggtgatcagtgcttctcctctttcaatgggtcttcttactgaggctggtgggtcagagtggcaccctgcttcttctgaactaaggctgcctgccgagctgctgctgatcactgcaaaggaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="122914" stop="120306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122614" g_stop="122479" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="365" r_length="229" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121096" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="664" r_length="299" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121095" i_stop="120646" i_length="450">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120645" g_stop="120606" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="704" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E487081" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122614" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121096"/>
          <exon e_start="120645" e_stop="120606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGAGGCTGGTGGTCCCGAGTGGCACCCTGCTTCTTCTGAACTTAAGGTTAATAATTCATTTTTCTCCCTTACTAATACTATCCCATAAGAGTATCGATTACTTGCTAAAAGTGCTCTGCTTTAGATTAGTTATGTTGTACCATCTCTACAATGTATTCATTTCTTCCCATCTGATCTGCCAATAGATGACGATTGAATATTTGGATATTGTACACAAACTAAAGTTTAAACTCCTTCAAGATAATATTGCATATTGAAATTACAAAACATAGAAGATGTCACTGAAATCAAGCACTTGACTTTTAAATCCATGGACAGCTTCCAACTTCTGATATTAGACGTCTTATTTTCAACTTGTGCTTGTTTGTATCCACTCTCCCAAAGTTGTTCTTCTCTCCACTCTTCAATGCTTCTTCCTGAATCTTCTCCCAAAATGAAACTGAGTGTTTTCTTATTTTTCTTACTCACTCAAATGTCTGCATATTTGCATCACCAGGCTGCCTGCCGTGCTGCTGCTGATCACTGCAAAGGAAAGG</genome_strand>
        <mrna_strand>CTGGACTCAATCTCAGCTCTGTCGGCTTCGGCGCTTCTCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGCCGCCGTCCGGGAAGCCTTTCGCCTCGGCGTCAATTTCTTTGACACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACGTTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTGGAGTACCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGCTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGATGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCATACCTGAAGAGCAAGGGTGTGGGGGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGAGGCTGGTGGGTCAGAGTGGCACCCTGCTTCTTCTGAAC-TAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCTGCCGAGCTGCTGCTGATCACTGCAAAGGAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600684" ref_strand="+" ref_description="SGN-E600684 [53702]">
      <seq>ctggactcaatctcagctctgtcggcttcggcgcttctcctctcggcaaggttttcggcgatgtctccgaacaagacgcattcgccgccgtccgggaagcctttcgcctcggcgtcaatttctttgacacttccccgtattatggaggaacgttatcggaaaaggtactagggaaagctttgaaggctcttggagtacctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactaaaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtccctcgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgcttcattggtataaccggcctacctttggggatattcacttatgtgcttgatcgcgtccctccaggcacagttgacgtcatcctgtcatattgtcactacagtgtcaacgattcaactttggaggatctgttgccatacctgaagagcaagggtgtgggggtgatcagtgcttctcctctttcaatgggtcttcttactgaggctggtggtccagagtggcaccctgcttcttctgaactgaaggctgcctgccgagctgctgctgatcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="122914" stop="120317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122614" g_stop="122479" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="365" r_length="229" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121096" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="665" r_length="300" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121095" i_stop="120646" i_length="450">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120645" g_stop="120617" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="694" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E600684" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122614" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121096"/>
          <exon e_start="120645" e_stop="120617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGAGGCTGGTGGTCCCGAGTGGCACCCTGCTTCTTCTGAACTTAAGGTTAATAATTCATTTTTCTCCCTTACTAATACTATCCCATAAGAGTATCGATTACTTGCTAAAAGTGCTCTGCTTTAGATTAGTTATGTTGTACCATCTCTACAATGTATTCATTTCTTCCCATCTGATCTGCCAATAGATGACGATTGAATATTTGGATATTGTACACAAACTAAAGTTTAAACTCCTTCAAGATAATATTGCATATTGAAATTACAAAACATAGAAGATGTCACTGAAATCAAGCACTTGACTTTTAAATCCATGGACAGCTTCCAACTTCTGATATTAGACGTCTTATTTTCAACTTGTGCTTGTTTGTATCCACTCTCCCAAAGTTGTTCTTCTCTCCACTCTTCAATGCTTCTTCCTGAATCTTCTCCCAAAATGAAACTGAGTGTTTTCTTATTTTTCTTACTCACTCAAATGTCTGCATATTTGCATCACCAGGCTGCCTGCCGTGCTGCTGCTGATCACTG</genome_strand>
        <mrna_strand>CTGGACTCAATCTCAGCTCTGTCGGCTTCGGCGCTTCTCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCATTCGCCGCCGTCCGGGAAGCCTTTCGCCTCGGCGTCAATTTCTTTGACACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACGTTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTGGAGTACCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGCTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTGCCATACCTGAAGAGCAAGGGTGTGGGGGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGAGGCTGGTGGTCCAGAGTGGCACCCTGCTTCTTCTGAACTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCTGCCGAGCTGCTGCTGATCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543007" ref_strand="-" ref_description="SGN-E543007 [TUS-64-J16](-)">
      <seq>cgggccccccttttgatgaatatcaactcacatttgtcatcttcttattgaagcagaagagtatctttcacatttcaaagccctaatatttacatcaatggcagctcagacattgcagctccgatcactgggcaacactggactcaaactcagctctgtcggcttcggcgcttcgcctctcggcaaggttttcggcgatgtctccgaacaagacgccttcgacgccgtccgggaagcctttcgcctcggtgtcaatttctttgatacttccccgtattatggaggaacattatcggaaaaggtactagggaaagctttgaaggctcttaaagtccctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactaaaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtccctcgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgtttcattggtataaccggcctacctttggggatattcacttatgtgcttgatcgcgtccctccaggcacagttgacgtcatcctgtcatattgtcactacagtgtcaacgattcaactttggaggatctgttaccgtacttgaagagcaagggtgtgggagtgatcagtgcttctcctctttcatgggtcttcttactgaggctggtggtcccgagtggcaccctgcttcctctgaacttaaggctgcctgccgtgctgctgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="123042" stop="120322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122742" g_stop="122479" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="273" r_length="263" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="502" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121096" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="801" r_length="299" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121095" i_stop="120646" i_length="450">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120645" g_stop="120622" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="825" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E543007" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543007" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="122742" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121096"/>
          <exon e_start="120645" e_stop="120622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATGAAATATCAACTCACATTTGTCATCTTCTTATTGAAGCAGAAGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGAGGCTGGTGGTCCCGAGTGGCACCCTGCTTCTTCTGAACTTAAGGTTAATAATTCATTTTTCTCCCTTACTAATACTATCCCATAAGAGTATCGATTACTTGCTAAAAGTGCTCTGCTTTAGATTAGTTATGTTGTACCATCTCTACAATGTATTCATTTCTTCCCATCTGATCTGCCAATAGATGACGATTGAATATTTGGATATTGTACACAAACTAAAGTTTAAACTCCTTCAAGATAATATTGCATATTGAAATTACAAAACATAGAAGATGTCACTGAAATCAAGCACTTGACTTTTAAATCCATGGACAGCTTCCAACTTCTGATATTAGACGTCTTATTTTCAACTTGTGCTTGTTTGTATCCACTCTCCCAAAGTTGTTCTTCTCTCCACTCTTCAATGCTTCTTCCTGAATCTTCTCCCAAAATGAAACTGAGTGTTTTCTTATTTTTCTTACTCACTCAAATGTCTGCATATTTGCATCACCAGGCTGCCTGCCGTGCTGCTGCTGAT</genome_strand>
        <mrna_strand>TTTTGATG-AATATCAACTCACATTTGTCATCTTCTTATTGAAGCAGAAGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTC-ATGGGTCTTCTTACTGAGGCTGGTGGTCCCGAGTGGCACCCTGCTTCCTCTGAACTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCTGCCGTGCTGCTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710873" ref_strand="+" ref_description="SGN-E710873 [FA57AG11]">
      <seq>cccatttatggcagctcagacattgcagctccgatcactgggcaactctggactcaaactcagctctgtcggcttcggcgcttcgcctctcggcaaggttttcggcgatgtctccgaacaagacgccttcgacgccgtccgggaagcctttcgcctcggtgtcaatttctttgatacttccccgtattatggaggaacattatcggaaaaggtactagggaaagctttgaaggctcttaaagtccctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactaaaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtccctcgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgtttcattggtataaccggcctacctttggggatattcacttatgtgcttgatcgcgtccctccaggcacagttgacgtcatcctgtcatattgtcactacagtgtcaacgattcaactttggaggatctgttaccgcacttgaagagcaagggtgtgggagtgatcagtgcttctcctctttcaatgggtcttcttactgaggctggtggtcccgagtggcaccctgcttcttctgaacttaacgctgcctgccgtgctgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="122959" stop="120324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122661" g_stop="122479" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="412" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121096" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="712" r_length="300" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121095" i_stop="120646" i_length="450">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120645" g_stop="120624" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="734" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E710873" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122661" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121096"/>
          <exon e_start="120645" e_stop="120624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGAGGCTGGTGGTCCCGAGTGGCACCCTGCTTCTTCTGAACTTAAGGTTAATAATTCATTTTTCTCCCTTACTAATACTATCCCATAAGAGTATCGATTACTTGCTAAAAGTGCTCTGCTTTAGATTAGTTATGTTGTACCATCTCTACAATGTATTCATTTCTTCCCATCTGATCTGCCAATAGATGACGATTGAATATTTGGATATTGTACACAAACTAAAGTTTAAACTCCTTCAAGATAATATTGCATATTGAAATTACAAAACATAGAAGATGTCACTGAAATCAAGCACTTGACTTTTAAATCCATGGACAGCTTCCAACTTCTGATATTAGACGTCTTATTTTCAACTTGTGCTTGTTTGTATCCACTCTCCCAAAGTTGTTCTTCTCTCCACTCTTCAATGCTTCTTCCTGAATCTTCTCCCAAAATGAAACTGAGTGTTTTCTTATTTTTCTTACTCACTCAAATGTCTGCATATTTGCATCACCAGGCTGCCTGCCGTGCTGCTGCTG</genome_strand>
        <mrna_strand>CCCATTTATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACTCTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGCACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGAGGCTGGTGGTCCCGAGTGGCACCCTGCTTCTTCTGAACTTAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCTGCCGTGCTGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372450" ref_strand="+" ref_description="SGN-E372450 [TUS-32-M12]">
      <seq>acattgcagctccgatcactgggcaacactggactcaaactcagctctgtcggcttcggcgcttcgcctctcggcaaggttttcggcgatgtctccgaacaagacgccttcgacgccgtccgggaagcctttcgcctcggtgtcaatttctttgatacttccccgtattatggaggaacattatcggaaaaggtactagggaaagctttgaaggctcttaaagtccctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactaaaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtccctcgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgtttcattggtataaccggcctacctttggggatattcacttatgtgcttgatcgcgtccctccaggcacagttgacgtcatcctgtcatattgtcactacagtgtcaacgattcaactttggaggatctgttaccgtacttgaagagcaagggtgtgggagtgatcagtgcttctcctctttcaatgggtcttcttactgacgctggtggtcccgagtggcaccctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="122942" stop="120811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122642" g_stop="122479" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="393" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121111" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="678" r_length="285" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E372450" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122642" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGAGGCTGGTGGTCCCGAGTGGCACCCTGCT</genome_strand>
        <mrna_strand>ACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGACGCTGGTGGTCCCGAGTGGCACCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400384" ref_strand="+" ref_description="SGN-E400384 [cSTC-8-O8]">
      <seq>actggactcaatctcagctctgtcggtttcggcgcttctcctctcggcaaggttttcggcgatgtctccgaacaagacgccttcgccgccgtccgggaagcctttcgcctcggcgtcaatttctttgacacttccccgtattatggaggaacgttatcggaaaaggtactagggaaagctttgaaggctcttggagtacctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactaaaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtccctcgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgcttcattggtataaccggcctacctttggggatattcacttatgtgcttgatcgcgtccctccaggcacagttgacgttatcctgtcatattgtcactacagtgtcaacgattcaactttggaggatctgttgccatacctgaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="122915" stop="120893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122615" g_stop="122479" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="366" r_length="229" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121193" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="569" r_length="203" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E400384" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122615" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAG</genome_strand>
        <mrna_strand>ACTGGACTCAATCTCAGCTCTGTCGGTTTCGGCGCTTCTCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGCCGCCGTCCGGGAAGCCTTTCGCCTCGGCGTCAATTTCTTTGACACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACGTTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTGGAGTACCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGCTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTTATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTGCCATACCTGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456222" ref_strand="+" ref_description="SGN-E456222 [cSTS-28-L10]">
      <seq>cactcacatttgtcatcttctcattgaagcagaggagtatctttcacatttcaaagccctaatatttacatcaatggcagctcagacattgcagctccgaccactgggcaacactggactcaatctcagctctgtcggcttcggcgcttctcctctcggcaaggttttcggagatgtctccgaacaagacgccttcgccgccgtccgggaagcctttcgcctcggcgtcaatttctttgacacttccccgtattatggaggaacgttatcggaaaaggtactagggaaagctttgaaggctcttggagtacctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactaaaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtccctcgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgcttcattggtataaccggcctacctttgaggatattcacttatgtgcttgatcgcgtccctccaggcacagttgacgtcatcctgtcatattgtcactacagtgtcaacgattcaactttnggaggatctgttgccatacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="123026" stop="120897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122727" g_stop="122479" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="478" r_length="229" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121197" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="678" r_length="200" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E456222" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122727" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCACATTTGTCATCTTCTTATTGAAGCAGAAGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTT-GGAGGATCTGTTACCGTACTTGA</genome_strand>
        <mrna_strand>CACTCACATTTGTCATCTTCTCATTGAAGCAGAGGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGACCACTGGGCAACACTGGACTCAATCTCAGCTCTGTCGGCTTCGGCGCTTCTCCTCTCGGCAAGGTTTTCGGAGATGTCTCCGAACAAGACGCCTTCGCCGCCGTCCGGGAAGCCTTTCGCCTCGGCGTCAATTTCTTTGACACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACGTTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTGGAGTACCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGCTTCATTGGTATAACCGGCCTACCTTTGAGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTNGGAGGATCTGTTGCCATACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327472" ref_strand="+" ref_description="SGN-E327472 [cTOC-19-P5]">
      <seq>tcatcttcttattgaagcagaagagtatctttcacatttcaaagccctaatatttacatcaatggcagctcagacattgcagctccgatcactgggcaacactggactcaaactcagctctgtcggcttcggcgcttcgcctctcggcaaggttttcggcgatgtctccgaacaagacgccttcgacgccgtccgggaagcctttcgcctcggtgtcaatttctttgatacttccccgtattatggaggaacattatcggaaaaggtactagggaaagctttgaaggctcttaaagtccctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactaaaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtccctcgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgtttcattggtataaccggcctacctttggggatattcacttatgtgcttgatcgcgtccctccaggcacagttgacgtcatcctgtcatattgtcactacagtgtcaacgattcaactttggaggatctgttaccgtacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="123015" stop="120897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122715" g_stop="122479" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="466" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121197" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="665" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E327472" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122715" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCTTATTGAAGCAGAAGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGA</genome_strand>
        <mrna_strand>TCATCTTCTTATTGAAGCAGAAGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335415" ref_strand="+" ref_description="SGN-E335415 [cTOE-2-H17]">
      <seq>tttcaaagccctaatatttacatcaatggcagctcagacattgcagctccgatcactgggcaacacctggactcaaactcagctctgtcggcttcggcgccttcgcctctcggcaaggttttcggcgatgtctccgaacaagacgccttcgacgccgtccgggaagcctttcgcctcggtgtcaatttctttgatacttccccgtattatggaggaacattatcggaaaaggtactagggaaagctttgaaggctcttaaagtccctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactaaaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtccctcgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgtttcattggtataaccggcctacctttggggatattcacttatgtgcttgatcgcgtccctccagcacagttgacgtcatcctgtcatattgtcactacagtgtcaacgattcaactttgggagatctgttaccgtacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="122979" stop="120898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122679" g_stop="122479" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="432" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121198" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="629" r_length="197" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E335415" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122679" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACA-CTGGACTCAAACTCAGCTCTGTCGGCTTCGGCG-CTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTG</genome_strand>
        <mrna_strand>TTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACCTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCA-GCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGGAGATCTGTTACCGTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339515" ref_strand="+" ref_description="SGN-E339515 [cTOE-16-M11]">
      <seq>tttcacatttcaaagccctaatatttacatcaatggcagctcagacattgcagctccgatcactgggcaacactggactcaaactcagctctgtcggcttcggcgcttcgcctctcggcaaggttttcggcgatgtctccgaacaagacgccttcgacgccgtccgggaagcctttcgcctcggtgtcaatttctttgatacttccccgtattatggaggaacattatcggaaaaggtactagggaaagctttgaaggctcttaaagtccctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactaaaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtccctcgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgtttcattggtataaccggcctacctttggggatattcacttatgtgcttgatcgcgtccctccaggcacagttgacgtcatcctgtcatattgtcactacagtgtcaacgattcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="122986" stop="120920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122686" g_stop="122479" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="437" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121220" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="613" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E339515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122686" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTT</genome_strand>
        <mrna_strand>TTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378777" ref_strand="+" ref_description="SGN-E378777 [TUS-32-M12]">
      <seq>agctccgatcactgggcaacactggactcaaactcagctctgtcggcttcggcgcttcgcctctcggcaaggttttcggcgatgtctccgaacaagacgccttcgacgccgtccgggaagcctttcgcctcggtgtcaatttctttgatacttccccgtattatggaggaacattatcggaaaaggtactagggaaagctttgaaggctcttaaagtccctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactaaaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtccctcgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgtttcattggtataaccggcctacctttggggatattcacttatgtgcttgatcgcgtccctccaggcacagttgacgtcatcctgtcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="122935" stop="120950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122635" g_stop="122479" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="386" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121250" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="532" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E378777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122635" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATA</genome_strand>
        <mrna_strand>AGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294026" ref_strand="+" ref_description="SGN-E294026 [cLET-13-N18]">
      <seq>acattgcagctccgatcactgggcaacactggactcaaactcagctctgtcggcttcggcgcttcgcctctcggcaaggttttcggcgatgtctccgaacaagacgccttcgacgccgtccgggaagcctttcgcctcggtgtcaatttctttgatacttccccgtattatggaggaacattatcggaaaaggtactagggaaagctttgaaggctcttaaagtccctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactaaaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtccctcgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgtttcattggtataaccggcctacctttggggatattcacttatgtgcttgatcgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="122942" stop="120983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122642" g_stop="122479" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="393" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121283" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="506" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E294026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122642" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGT</genome_strand>
        <mrna_strand>ACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367133" ref_strand="+" ref_description="SGN-E367133 [cLPT-5-J3]">
      <seq>tcaactcatttttgtcatctttttattgaagcagaagagtatctttcacagttcaaagccctaatatttacatcaatggcagctcagacattgcagctccgatcactgggcaacactggactcaaactcagctctgtcggcttcggcgcttctcctctcggcaaggttttcggcgatgtctccgaacaagacgccttcgacgccgtccgggaagcctttcgcctgggtgtcaatttctttgacacttccccgtattatggaggaacgttatcggaaaaggtactagggaaagctttgaaggctcttggagtccctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactagaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtcccttgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgtttcattggtataaccggcctacctttggggatattcacttatgtgcttgatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="123029" stop="120985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122729" g_stop="122479" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="480" r_length="229" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121285" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="591" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E367133" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122729" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCACATTTGTCATCTTCTTATTGAAGCAGAAGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGC</genome_strand>
        <mrna_strand>TCAACTCATTTTTGTCATCTTTTTATTGAAGCAGAAGAGTATCTTTCACAGTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCTCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTGGGTGTCAATTTCTTTGACACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACGTTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTGGAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAGAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTTGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251219" ref_strand="+" ref_description="SGN-E251219 [cLEG-10-C1]">
      <seq>tctactattttttagataggagtattttgatgaaatatcaactcacatttgggatcttcttattgaagcagaagagtatctttcacatttcaaagccctaatatttacatcaatggcagctcagacattgcagctccgatcactgggcaacactggactcaaactcagctctgtcggcttcggcgcttcgcctctcggcaaggttttcggcgatgtctccgaacaagacgccttcgacgccgtccgggaagcctttcgcctcggtgtcaatttctttgatacttccccgtattatggaggaacattatcggaaaaggtactagggaaagctttgaaggctcttaaagtccctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactaaaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtccctcgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgtttcattggtataaccggcctacctttggggatattcacttatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="123066" stop="120993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122766" g_stop="122479" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="517" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121293" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="620" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E251219" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122766" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACTATTTTTTAGATAGGAGTATTTTGATGAAATATCAACTCACATTTGTCATCTTCTTATTGAAGCAGAAGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGC</genome_strand>
        <mrna_strand>TCTACTATTTTTTAGATAGGAGTATTTTGATGAAATATCAACTCACATTTGGGATCTTCTTATTGAAGCAGAAGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450232" ref_strand="+" ref_description="SGN-E450232 [cSTS-8-D16]">
      <seq>ctcacatttgtcatcttctcattgaagcagaggagtatctttcacatttcaaagccctaatatttacatcaatggcagctcagacattgcagctccgatcactgggcaacactggactcaatctcagctctgtcggcttcggcgcttctcctctcggcaaggttttcggcgatgtctccgaacaagacgccttcgccgccgtccgggaagcctttcgcctcggcgtcaatttctttgacacttccccgtattatggaggaacgttatcggaaaaggtactagggaaagctttgaaggctcttggagtacctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctgagagagtgactaaaagtattgatgagagcttggagaggctgcagcttgattatgttgatatgttacaatgtcatgatattgaatttgggtccctcgatcagattgtgaatgagacacttcccgcccttctaaaattgaagcaagctggaaagatccgcttcattggtataaccggcctacctttggggatattcacttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="123025" stop="120996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122725" g_stop="122479" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121911" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="476" r_length="229" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121395" g_stop="121296" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="576" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E450232" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122725" e_stop="122479"/>
          <exon e_start="122139" e_stop="121911"/>
          <exon e_start="121395" e_stop="121296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACATTTGTCATCTTCTTATTGAAGCAGAAGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAGGTGCTTTATTGATCATTTAGGTTATAATTCTTCTACCTGAACACCAATTTTTCTAAATACTTCGTAAATCTGCATGATAAAAAAAGATCATGATTTTGTAAGATTTTTTGTATTGTTTCCAAGTATGTACCATTTACTTTTACTTAACTGAGTAAATGTCTGATGCTTGTTAAAATATTTTGATCCTAGTAGTTCGAATTTTTTCATTCCTTCAGATTGAAGGGAGTTTCTTATAAGGTTTGGCCAAGTGACATTTTAGCATTGTAAATCTCTTTTTGATTCCTTCCTCAACTTGTCATATTGATTACACATCAAACTACGTAATTTGTTCTCAGTGTTTGATATATCTGGTTTTAAAAATCTTATCTTTCTTTGTGATATTATCCAGAGGTAGTTTTTTGAAAGTAAGATTTATAGCCCTTTTTCCTCCTTCCCACTTTATCACGATTTTGTTTGTGGAAATATGTAGTTTTAGCATGGGAGTTTTAGTGGATATTTATTTTTGTCTCGAACAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATG</genome_strand>
        <mrna_strand>CTCACATTTGTCATCTTCTCATTGAAGCAGAGGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAATCTCAGCTCTGTCGGCTTCGGCGCTTCTCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGCCGCCGTCCGGGAAGCCTTTCGCCTCGGCGTCAATTTCTTTGACACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACGTTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTGGAGTACCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGCTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289766" ref_strand="+" ref_description="SGN-E289766 [cLET-4-L22]">
      <seq>ttttctactattttttagataggagtattttgatgaaatatcaactcacatttgtcatcttcttattgaagcagaagagtatctttcacatttcaaagccctaatatttacatcaatggcagttcagacattgcagctccgatcactgggcaacactggactcaaactcagctctgtcggcttcggcgcttcgcctctcggcaaggttttcggcgatgtctccgaacaagacgccttcgacgccgtccgggaagcctttcgcctcggtgtcaatttctttgatacttgcccgtattatggaggaacattatcggaaaaggtactagggaaagctttgaaggctcttaaagtccctagagatcagtacattgtgtctacaaaatgtgggaggtacaaagagggatttgattttagtgctaagagagtgactaaaagtattgatgagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="123069" stop="121683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122769" g_stop="122479" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="121983" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="448" r_length="157" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E289766" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122769" e_stop="122479"/>
          <exon e_start="122139" e_stop="121983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTACTATTTTTTAGATAGGAGTATTTTGATGAAATATCAACTCACATTTGTCATCTTCTTATTGAAGCAGAAGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGC</genome_strand>
        <mrna_strand>TTTTCTACTATTTTTTAGATAGGAGTATTTTGATGAAATATCAACTCACATTTGTCATCTTCTTATTGAAGCAGAAGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGTTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTGCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTAAGAGAGTGACTAAAAGTATTGATGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426163" ref_strand="+" ref_description="SGN-E426163 [STM-46-K9]">
      <seq>cactcacatttgtcatcttctcattgaagcagaggagtatctttcacatttcaaagccctaatatttacatcaatggcagctcagacattgcagctccgaccactgggcaacactggactcaatctcagctctgtcggcttcggcgcttctcctctcggcaaggttttcggagatgtctccgaacaagacgccttcgccgccgtccgggaagcctttcgcctcggcgtcaatttctttgacacttccccgtattatggaggaacgttatcggaaaaggtactagggaaagctttgaaggctcttggagtacctagagatcagtacattgtgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="123026" stop="121754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122727" g_stop="122479" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122139" g_stop="122054" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="335" r_length="86" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E426163" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122727" e_stop="122479"/>
          <exon e_start="122139" e_stop="122054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCACATTTGTCATCTTCTTATTGAAGCAGAAGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTACATAATCAATCTCTTTGTCATCTTCTATTTAGATTTAATTTATCCAGCAGATTATTATGTATTTAGAAATGCACATATAGTTGAATTTCGTCTTTATAAGCATGAATTTTGAATTACATCTGCATTTAGTGTTATGAGTAGTGGATGCAGTCTTATTAGCCCGCATTCGTTTAAAATTTTGATCAACCTCTACTATTTGAATTTTGTGAATGACCGGGAATAGGCATAAGTGATTTGAATTTTGGATCCGCATCTTGAATCATTTTGCTGTTTAATTCGGAAATTATAGTTGAACTACTGAAAATTGGTCCTTCTTTAAAATTGACGACTTTTCAGGTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTA</genome_strand>
        <mrna_strand>CACTCACATTTGTCATCTTCTCATTGAAGCAGAGGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGACCACTGGGCAACACTGGACTCAATCTCAGCTCTGTCGGCTTCGGCGCTTCTCCTCTCGGCAAGGTTTTCGGAGATGTCTCCGAACAAGACGCCTTCGCCGCCGTCCGGGAAGCCTTTCGCCTCGGCGTCAATTTCTTTGACACTTCCCC...................................................................................................................................................................................................................................................................................................................................................GTATTATGGAGGAACGTTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTGGAGTACCTAGAGATCAGTACATTGTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300224" ref_strand="+" ref_description="SGN-E300224 [cLEW-17-K12]">
      <seq>aaaaatctccaactttataggacataatattaagattagctgtgtcctgatctcctcttaattaattaaagtaagtcactaattcctttaatttccttatatattttactttttatgtgtatccatttccacaattttatttggatttttttttatttttgttcaggatttctccacattgtttttgggatttttcaagaatttcgtaatttacgaggtacaattctatccactggagcgaaataaacttttagcgagaattaaaattttttctttttactcgatagaattgccacttaaatataaaatagtcaattgtgggtaaaaaaaaagttatttttgttgcaaaaatgtgtggtttcaaagcccaaactcttaaaaatctagacaatttttcacgttttttttttcaagattattgaaatttagaattgaatatttatatttttgttgcaggaaatggaatattatgggtttaatcaacattggcctattagctcatatgatgagctaagtgcaatatctatagcaaattcatttggtcatgagaataatttgcatgaatcattcatctctcatcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="127931" stop="129114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128231" g_stop="128814" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E300224" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128231" e_stop="128814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCTCCAACTTTATAGGACATAATATTAAGATTAGCTTTGTCCTGATCTCCTCTTAATTAATTAAAGTAAGTCACTAATTCCTTTAATTTCCTTATATATTTTACTTTTTATGTGTATCCATTTCCACAATTTTATTTGGATTTTTTTTTATTTTTGTTCAGGATTTCTCCACATTGTTTTTGGGATTTTTCAAGAATTTCGTAATTTACGAGGTACAATTCTATCCACTGGAGCGAAATAAACTTTTAGCGAGAATTAAAATTTTTTCTTTTTACTCGATAGAATTGCCACTTAAATATAAAATAGTCAATTGTGGGTAAAAAAAAAGTTATTTTTGTTGCAAAAATGTGTGGTTTCAAAGCCCAAACTCTTAAAAATCTAGACAATTTTTCACGTTTTTTTTTTCAAGATTATTGAAATTTAGAATTGAATATTTATATTTTTGTTGCAGGAAATGGAATATTATGGGTTTAATCAACATTGGCCTATTAGCTCATATGATGAGCTAAGTGCAATATCTATAGCAAATTCATTTGGTCATGAGAATAATTTGCATGAATCATTCATCTCTCATCATCA</genome_strand>
        <mrna_strand>AAAAATCTCCAACTTTATAGGACATAATATTAAGATTAGCTGTGTCCTGATCTCCTCTTAATTAATTAAAGTAAGTCACTAATTCCTTTAATTTCCTTATATATTTTACTTTTTATGTGTATCCATTTCCACAATTTTATTTGGATTTTTTTTTATTTTTGTTCAGGATTTCTCCACATTGTTTTTGGGATTTTTCAAGAATTTCGTAATTTACGAGGTACAATTCTATCCACTGGAGCGAAATAAACTTTTAGCGAGAATTAAAATTTTTTCTTTTTACTCGATAGAATTGCCACTTAAATATAAAATAGTCAATTGTGGGTAAAAAAAAAGTTATTTTTGTTGCAAAAATGTGTGGTTTCAAAGCCCAAACTCTTAAAAATCTAGACAATTTTTCACGTTTTTTTTTTCAAGATTATTGAAATTTAGAATTGAATATTTATATTTTTGTTGCAGGAAATGGAATATTATGGGTTTAATCAACATTGGCCTATTAGCTCATATGATGAGCTAAGTGCAATATCTATAGCAAATTCATTTGGTCATGAGAATAATTTGCATGAATCATTCATCTCTCATCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209883" ref_strand="+" ref_description="SGN-E209883 [cLEC-52-O10]">
      <seq>ataatattaagattagctttgtcctgatctcctcttaattaattaaagatttctccacattgtttttgggatttttcaagaatttcgtaatttacgaggaaatggaatattatgggtttaatcaacattggcctattagctcatatgatgagctaagtgcaatatctatagcaaattcatttggtcatgagaataatttgcatgaatcattcatctctcatcatcagccactattatgccataaaaggcctatagaattgtcccaaattattgaagaaaggccactaaaaaattccaaaacaagtcatagctggaacaatactattgaaattgatcaaatattgagctcacaatctgtggtttctcccaattattcccatttgatgaactcatcaaataattacactaaccaacaagttgtgacaatgaagcccaaagaggaaacaactaatttgtcatcaagcagtataacttttgcagctgatcattgtcataacaatatggtttgtcatcaagattcttttgctaatcagaattatatgatgtttaaggctgcatcatgtcaaggtgctaataagagtgttagcactaatggaaaattaacacaagctcaagatcatatcattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="127954" stop="129518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128254" g_stop="128300" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128301" i_stop="128396" i_length="96">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128397" g_stop="128447" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="98" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128448" i_stop="128686" i_length="239">
            <donor d_prob="0.591" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128687" g_stop="129218" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="630" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E209883" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128254" e_stop="128300"/>
          <exon e_start="128397" e_stop="128447"/>
          <exon e_start="128687" e_stop="129218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATATTAAGATTAGCTTTGTCCTGATCTCCTCTTAATTAATTAAAGTAAGTCACTAATTCCTTTAATTTCCTTATATATTTTACTTTTTATGTGTATCCATTTCCACAATTTTATTTGGATTTTTTTTTATTTTTGTTCAGGATTTCTCCACATTGTTTTTGGGATTTTTCAAGAATTTCGTAATTTACGAGGTACAATTCTATCCACTGGAGCGAAATAAACTTTTAGCGAGAATTAAAATTTTTTCTTTTTACTCGATAGAATTGCCACTTAAATATAAAATAGTCAATTGTGGGTAAAAAAAAAGTTATTTTTGTTGCAAAAATGTGTGGTTTCAAAGCCCAAACTCTTAAAAATCTAGACAATTTTTCACGTTTTTTTTTTCAAGATTATTGAAATTTAGAATTGAATATTTATATTTTTGTTGCAGGAAATGGAATATTATGGGTTTAATCAACATTGGCCTATTAGCTCATATGATGAGCTAAGTGCAATATCTATAGCAAATTCATTTGGTCATGAGAATAATTTGCATGAATCATTCATCTCTCATCATCAGCCACTATTATGCCATAAAAGGCCTATAGAATTGTCCCAAATTATTGAAGAAAGGCCACTAAAAAATTCCAAAACAAGTCATAGCTGGAACAATACTATTGAAATTGATCAAATATTGAGCTCACAATCTGTGGTTTCTCCCAATTATTCCCATTTGATGAACTCATCAAATAATTACACTAACCAACAAGTTGTGACAATGAAGCCCAAAGAGGAAACAACTAATTTGTCATCAAGCAGTATAACTTTTGCAGCTGATCATTGTCATAACAATATGGTTTGTCATCAAGATTCTTTTGCTAATCAGAATTATATGATGTTTAAGGCTGCATCATGTCAAGGTGCTAATAAGAGTGTTAGCACTAATGGAAAATTAACACAAGCTCAAGATCATATCATTGCTG</genome_strand>
        <mrna_strand>ATAATATTAAGATTAGCTTTGTCCTGATCTCCTCTTAATTAATTAAA................................................................................................GATTTCTCCACATTGTTTTTGGGATTTTTCAAGAATTTCGTAATTTACGAG...............................................................................................................................................................................................................................................GAAATGGAATATTATGGGTTTAATCAACATTGGCCTATTAGCTCATATGATGAGCTAAGTGCAATATCTATAGCAAATTCATTTGGTCATGAGAATAATTTGCATGAATCATTCATCTCTCATCATCAGCCACTATTATGCCATAAAAGGCCTATAGAATTGTCCCAAATTATTGAAGAAAGGCCACTAAAAAATTCCAAAACAAGTCATAGCTGGAACAATACTATTGAAATTGATCAAATATTGAGCTCACAATCTGTGGTTTCTCCCAATTATTCCCATTTGATGAACTCATCAAATAATTACACTAACCAACAAGTTGTGACAATGAAGCCCAAAGAGGAAACAACTAATTTGTCATCAAGCAGTATAACTTTTGCAGCTGATCATTGTCATAACAATATGGTTTGTCATCAAGATTCTTTTGCTAATCAGAATTATATGATGTTTAAGGCTGCATCATGTCAAGGTGCTAATAAGAGTGTTAGCACTAATGGAAAATTAACACAAGCTCAAGATCATATCATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204686" ref_strand="+" ref_description="SGN-E204686 [cLEC-14-H7]">
      <seq>attatatgatgtttaaggctgcatcatgtcaaggtgctaataagagtgttagcactaatggaaaattaacacaagctcaagatcatatcattgctgagaggaaaagacgcgaaaagcttagccaaagattcattgctttatctgctctaattcccggactcaaaaagatggacaaggcttcagttcttggagatgcaataaaatacttgaaacaacttcaagagaaagtgaagacgcttgaggagcaaacaaagaaaaaatcagtggaatctgttgtatttgttaagaaatatgaactttatggagatggtgaaaattcttcatcagatgaaaattactcaagtggtactgtgccagttgatgaggcactcccagaaattgaagcaagaatatctgaaaaagatgtattaattagaatccactgtgaaaaaagcaaaggagttgttgagaaaacagttgctgaaattgagaaacttcatctatcagtcatcaatacatgtgccttgtcttttggaacttctgctcttgacattaccataattgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="128823" stop="130385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129123" g_stop="129289" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129290" i_stop="129705" i_length="416">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129706" g_stop="130085" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="546" r_length="379" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E204686" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129123" e_stop="129289"/>
          <exon e_start="129706" e_stop="130085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATATGATGTTTAAGGCTGCATCATGTCAAGGTGCTAATAAGAGTGTTAGCACTAATGGAAAATTAACACAAGCTCAAGATCATATCATTGCTGAGAGGAAAAGACGCGAAAAGCTTAGCCAAAGATTCATTGCTTTATCTGCTCTAATTCCCGGACTCAAAAAGGTACTTAAGATACACTTATATCAAGATTATGAATATGTTCGATACGAAGAAAATCATTTTATTTTTTAAATTTTTTGAAAGATATATGACCTATTTTTGGAGTTTCTGAGTGGTTGCAACTAAAATGAAAAATAAGTCGATGATAGATTAGCACATTATATCGTGTGGTAGTGCTTAATTTGATGATTTTTCTTAGTTTTCAAGATTGATAGTTGTGTATATCAATCTTGAAAAGTAAGTGTTTGTTGGACCAATAATAATGCTAAGTCAAGAGTTCCATAAAGTTTTTGAAGGAAAATGACTTTCGTTCAAAATTCATTTTTCTCGAACTGGACATCTATTTTTAGTATACTGGACAAGTAAATATTATTAGCGTGAGTAATATATATTTACTAAACTTTTGGTATGATGAATAGATGGACAAGGCTTCAGTTCTTGGAGATGCAATAAAATACTTGAAACAACTTCAAGAGAAAAGTGAAGACGCTTGAGGAGCAAACAAAGAAAAAATCAGTGGAATCTGTTGTATTTGTTAAGAAATATGAACTTTATGGAGATGGTGAAAATTCTTCATCAGATGAAAATTACTCAAGTGGTACTGTGCCAGTTGATGAGGCACTCCCAGAAATTGAAGCAAGAATATCTGAAAAAGATGTATTAATTAGAATCCACTGTGAAAAAAGCAAAGGAGTTGTTGAGAAAACAGTTGCTGAAATTGAGAAACTTCATCTATCAGTCATCAATACATGTGCCTTGTCTTTTGGAACTTCTGCTCTTGACATTACCATAATTGCTC</genome_strand>
        <mrna_strand>ATTATATGATGTTTAAGGCTGCATCATGTCAAGGTGCTAATAAGAGTGTTAGCACTAATGGAAAATTAACACAAGCTCAAGATCATATCATTGCTGAGAGGAAAAGACGCGAAAAGCTTAGCCAAAGATTCATTGCTTTATCTGCTCTAATTCCCGGACTCAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAAGGCTTCAGTTCTTGGAGATGCAATAAAATACTTGAAACAACTTCAAGAG-AAAGTGAAGACGCTTGAGGAGCAAACAAAGAAAAAATCAGTGGAATCTGTTGTATTTGTTAAGAAATATGAACTTTATGGAGATGGTGAAAATTCTTCATCAGATGAAAATTACTCAAGTGGTACTGTGCCAGTTGATGAGGCACTCCCAGAAATTGAAGCAAGAATATCTGAAAAAGATGTATTAATTAGAATCCACTGTGAAAAAAGCAAAGGAGTTGTTGAGAAAACAGTTGCTGAAATTGAGAAACTTCATCTATCAGTCATCAATACATGTGCCTTGTCTTTTGGAACTTCTGCTCTTGACATTACCATAATTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394249" ref_strand="+" ref_description="SGN-E394249 [TUS-14-G15]">
      <seq>cttgaggagcaaacaaagaaaaaatcagtggaatctgttgtatttgttaagaaatatgaactttatggagatggtgaaaattcttcatcagatgaaaattactcaagtggtactgtgccagttgatgaggcactcccagaaattgaagcaagaatatctgaaaaagatgtattaattagaatccactgtgaaaaaagcaaaggagttgttgagaaaacagttgctgaaattgagaaacttcatctatcagtcatcaatacatgtgccttgtcttttggaacttctgctcttgacattaccataattgctcagatggatgaggaatttgcaatgacagtaaaggatcttgtcaaaaatttgcgctcagctctcaaagtgtttatgtgaaggggtgtgatcgttgaccaacttatcgtagtttcttttaaagcgtttgatacaacaaaagtcattttaccgttttctttttccagttctataattggatgtttagggttgtgaggtcaaattcaccttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="129476" stop="130933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129776" g_stop="130087" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130088" i_stop="130420" i_length="333">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130421" g_stop="130633" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="525" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E394249" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129776" e_stop="130087"/>
          <exon e_start="130421" e_stop="130633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGGAGCAAACAAAGAAAAAATCAGTGGAATCTGTTGTATTTGTTAAGAAATATGAACTTTATGGAGATGGTGAAAATTCTTCATCAGATGAAAATTACTCAAGTGGTACTGTGCCAGTTGATGAGGCACTCCCAGAAATTGAAGCAAGAATATCTGAAAAAGATGTATTAATTAGAATCCACTGTGAAAAAAGCAAAGGAGTTGTTGAGAAAACAGTTGCTGAAATTGAGAAACTTCATCTATCAGTCATCAATACATGTGCCTTGTCTTTTGGAACTTCTGCTCTTGACATTACCATAATTGCTCAGGTATATTTGTTCGCTTTTACTTCTTCGTTATATTAAAAATATCTTTTTATTTTTACTAGTACACACTATACATCAAGATAAAAAAAAATTCATATTTTTACTATGACATTTGTGACATGGTGTTAAGAATGATTACTAATATGCTATTATTATATTACAATTTAAACTACATTGATGTTGTTAGAGAAATTCCATACTATTATGTGAATATAACTTAACTTCTAGATTATACTTTTTGTTATAACTATTAATTTTATACTTTACATGTGGTAATTAGGTTATTATTTTACTTTTTTTCATTTTCAAATTCTTAAAAGGCTTAATTCCATGCAGATGGATGAGGAATTTGCAATGACAGTAAAGGATCTTGTCAAAAATTTGCGCTCAGCTCTCAAAGTGTTTATGTGAAGGGGTGTGATCGTTGACCAACTTATCGTAATTTCTTTTAAAGCGTTTGATACAACAAAAGTCATTTTACCGTTTTCTTTTTCCAGTTCTATAATTGGATGTTTAGGGTTGTGAGGTCAAATTCACCTTTTTTTTTTT</genome_strand>
        <mrna_strand>CTTGAGGAGCAAACAAAGAAAAAATCAGTGGAATCTGTTGTATTTGTTAAGAAATATGAACTTTATGGAGATGGTGAAAATTCTTCATCAGATGAAAATTACTCAAGTGGTACTGTGCCAGTTGATGAGGCACTCCCAGAAATTGAAGCAAGAATATCTGAAAAAGATGTATTAATTAGAATCCACTGTGAAAAAAGCAAAGGAGTTGTTGAGAAAACAGTTGCTGAAATTGAGAAACTTCATCTATCAGTCATCAATACATGTGCCTTGTCTTTTGGAACTTCTGCTCTTGACATTACCATAATTGCTCAG.............................................................................................................................................................................................................................................................................................................................................ATGGATGAGGAATTTGCAATGACAGTAAAGGATCTTGTCAAAAATTTGCGCTCAGCTCTCAAAGTGTTTATGTGAAGGGGTGTGATCGTTGACCAACTTATCGTAGTTTCTTTTAAAGCGTTTGATACAACAAAAGTCATTTTACCGTTTTCTTTTTCCAGTTCTATAATTGGATGTTTAGGGTTGTGAGGTCAAATTCACCTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394055" ref_strand="+" ref_description="SGN-E394055 [TUS-14-G14]">
      <seq>cttgaggagcaaacaaagaaaaaatcagtggaatctgttgtatttgttaagaaatatgaactttatggagatggtgaaaattcttcatcagatgaaaattactcaagtggtactgtgccagttgatgaggcactcccagaaattgaagcaagaatatctgaaaaagatgtattaattagaatccactgtgaaaaaagcaaaggagttgttgagaaaacagttgctgaaattgagaaacttcatctatcagtcatcaatacatgtgccttgtcttttggaacttctgctcttgacattaccataattgctcagatggatgaggaatttgcaatgacagtaaaggatcttgtcaaaaatttgcgctcagctctcaaagtgtttatgtgaaggggtgtgatcgttgacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="129476" stop="130815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129776" g_stop="130087" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130088" i_stop="130420" i_length="333">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130421" g_stop="130515" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="407" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E394055" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129776" e_stop="130087"/>
          <exon e_start="130421" e_stop="130515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGGAGCAAACAAAGAAAAAATCAGTGGAATCTGTTGTATTTGTTAAGAAATATGAACTTTATGGAGATGGTGAAAATTCTTCATCAGATGAAAATTACTCAAGTGGTACTGTGCCAGTTGATGAGGCACTCCCAGAAATTGAAGCAAGAATATCTGAAAAAGATGTATTAATTAGAATCCACTGTGAAAAAAGCAAAGGAGTTGTTGAGAAAACAGTTGCTGAAATTGAGAAACTTCATCTATCAGTCATCAATACATGTGCCTTGTCTTTTGGAACTTCTGCTCTTGACATTACCATAATTGCTCAGGTATATTTGTTCGCTTTTACTTCTTCGTTATATTAAAAATATCTTTTTATTTTTACTAGTACACACTATACATCAAGATAAAAAAAAATTCATATTTTTACTATGACATTTGTGACATGGTGTTAAGAATGATTACTAATATGCTATTATTATATTACAATTTAAACTACATTGATGTTGTTAGAGAAATTCCATACTATTATGTGAATATAACTTAACTTCTAGATTATACTTTTTGTTATAACTATTAATTTTATACTTTACATGTGGTAATTAGGTTATTATTTTACTTTTTTTCATTTTCAAATTCTTAAAAGGCTTAATTCCATGCAGATGGATGAGGAATTTGCAATGACAGTAAAGGATCTTGTCAAAAATTTGCGCTCAGCTCTCAAAGTGTTTATGTGAAGGGGTGTGATCGTTGACCA</genome_strand>
        <mrna_strand>CTTGAGGAGCAAACAAAGAAAAAATCAGTGGAATCTGTTGTATTTGTTAAGAAATATGAACTTTATGGAGATGGTGAAAATTCTTCATCAGATGAAAATTACTCAAGTGGTACTGTGCCAGTTGATGAGGCACTCCCAGAAATTGAAGCAAGAATATCTGAAAAAGATGTATTAATTAGAATCCACTGTGAAAAAAGCAAAGGAGTTGTTGAGAAAACAGTTGCTGAAATTGAGAAACTTCATCTATCAGTCATCAATACATGTGCCTTGTCTTTTGGAACTTCTGCTCTTGACATTACCATAATTGCTCAG.............................................................................................................................................................................................................................................................................................................................................ATGGATGAGGAATTTGCAATGACAGTAAAGGATCTTGTCAAAAATTTGCGCTCAGCTCTCAAAGTGTTTATGTGAAGGGGTGTGATCGTTGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202476" ref_strand="+" ref_description="SGN-E202476 [cLEC-6-K6]">
      <seq>ttgaggagcaaacaaagaaaaaatcagtggaatctgttgtatttgttaagaaatatgaactttatggagatggtgaaaattcttcatcagatgaaaattactcaagtggtactgtgccagttgatgaggcactcccagaaattgaagcaagaatatctgaaaaagatgtattaattagaatccactgtgaaaaaagcaaaggagttgttgagaaaacagttgctgaaattgagaaacttcatctatcagtcatcaatacatgtgccttgtcttttggaacttctgctcttgacattaccataattgctcagatggatgaggaatttgcaatgacagtaaaggatcttgtcaaaaatttgcgctcagctctcaaagtgtttatgtgaaggggtgtgatcgttgaccaacttatcgtaatttcttttaaagcgtttgatacaacaaaagtcattttaccgttttctttttccagttctataattggatgtttagggttgtgaggtcaaattcaccttttttttttttcaaaaccaagtcctttgaagcttgtttgccgtggggttaattaagtcatttttttagggaggatttattttttaacctctcatttttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="129477" stop="131022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129777" g_stop="130087" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130088" i_stop="130420" i_length="333">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130421" g_stop="130722" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="615" r_length="304" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E202476" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129777" e_stop="130087"/>
          <exon e_start="130421" e_stop="130722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGAGCAAACAAAGAAAAAATCAGTGGAATCTGTTGTATTTGTTAAGAAATATGAACTTTATGGAGATGGTGAAAATTCTTCATCAGATGAAAATTACTCAAGTGGTACTGTGCCAGTTGATGAGGCACTCCCAGAAATTGAAGCAAGAATATCTGAAAAAGATGTATTAATTAGAATCCACTGTGAAAAAAGCAAAGGAGTTGTTGAGAAAACAGTTGCTGAAATTGAGAAACTTCATCTATCAGTCATCAATACATGTGCCTTGTCTTTTGGAACTTCTGCTCTTGACATTACCATAATTGCTCAGGTATATTTGTTCGCTTTTACTTCTTCGTTATATTAAAAATATCTTTTTATTTTTACTAGTACACACTATACATCAAGATAAAAAAAAATTCATATTTTTACTATGACATTTGTGACATGGTGTTAAGAATGATTACTAATATGCTATTATTATATTACAATTTAAACTACATTGATGTTGTTAGAGAAATTCCATACTATTATGTGAATATAACTTAACTTCTAGATTATACTTTTTGTTATAACTATTAATTTTATACTTTACATGTGGTAATTAGGTTATTATTTTACTTTTTTTCATTTTCAAATTCTTAAAAGGCTTAATTCCATGCAGATGGATGAGGAATTTGCAATGACAGTAAAGGATCTTGTCAAAAATTTGCGCTCAGCTCTCAAAGTGTTTATGTGAAGGGGTGTGATCGTTGACCAACTTATCGTAATTTCTTTTAAAGCGTTTGATACAACAAAAGTCATTTTACCGTTTTCTTTTTCCAGTTCTATAATTGGATGTTTAGGGTTGTGAGGTCAAATTCACC-TTTTTTTTTTTCAAAACCAAGTCCTTTGAAGCTTGTTTGCCGTGGGGTTAATTAAGTCA-TTTTTTAGGGAGGATTTATTTTTTAACCTCTCATTTTTGCA</genome_strand>
        <mrna_strand>TTGAGGAGCAAACAAAGAAAAAATCAGTGGAATCTGTTGTATTTGTTAAGAAATATGAACTTTATGGAGATGGTGAAAATTCTTCATCAGATGAAAATTACTCAAGTGGTACTGTGCCAGTTGATGAGGCACTCCCAGAAATTGAAGCAAGAATATCTGAAAAAGATGTATTAATTAGAATCCACTGTGAAAAAAGCAAAGGAGTTGTTGAGAAAACAGTTGCTGAAATTGAGAAACTTCATCTATCAGTCATCAATACATGTGCCTTGTCTTTTGGAACTTCTGCTCTTGACATTACCATAATTGCTCAG.............................................................................................................................................................................................................................................................................................................................................ATGGATGAGGAATTTGCAATGACAGTAAAGGATCTTGTCAAAAATTTGCGCTCAGCTCTCAAAGTGTTTATGTGAAGGGGTGTGATCGTTGACCAACTTATCGTAATTTCTTTTAAAGCGTTTGATACAACAAAAGTCATTTTACCGTTTTCTTTTTCCAGTTCTATAATTGGATGTTTAGGGTTGTGAGGTCAAATTCACCTTTTTTTTTTTTCAAAACCAAGTCCTTTGAAGCTTGTTTGCCGTGGGGTTAATTAAGTCATTTTTTTAGGGAGGATTTATTTTTTAACCTCTCATTTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202265" ref_strand="+" ref_description="SGN-E202265 [cLEC-6-K5]">
      <seq>ttgaggagcaaacaaagaaaaaatcagtggaatctgttgtatttgttaagaaatatgaactttatggagatggtgaaaattcttcatcagatgaaaattactcaagtggtactgtgccagttgatgaggcactcccagaaattgaagcaagaatatctgaaaaagatgtattaattagaatccactgtgaaaaaagcaaaggagttgttgagaaaacagttgctgaaattgagaaacttcatctatcagtcatcaatacatgtgccttgtcttttggaacttctgctcttgacattaccataattgctcagatggatgaggaatttgcaatgacagtgaaggatcttgtcaaaaatttgcgctcagctctcaaagtgtttatgtgaaggggtgtgatcgttgaccaacttatcgtaatttcttttaaagcgtttgatacaacaaaagtcattttaccgatttctttttccagttctataattggatgtttagggttgtgaggtcaaattcaccttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="129477" stop="130933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129777" g_stop="130087" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130088" i_stop="130420" i_length="333">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130421" g_stop="130633" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="524" r_length="213" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E202265" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129777" e_stop="130087"/>
          <exon e_start="130421" e_stop="130633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGAGCAAACAAAGAAAAAATCAGTGGAATCTGTTGTATTTGTTAAGAAATATGAACTTTATGGAGATGGTGAAAATTCTTCATCAGATGAAAATTACTCAAGTGGTACTGTGCCAGTTGATGAGGCACTCCCAGAAATTGAAGCAAGAATATCTGAAAAAGATGTATTAATTAGAATCCACTGTGAAAAAAGCAAAGGAGTTGTTGAGAAAACAGTTGCTGAAATTGAGAAACTTCATCTATCAGTCATCAATACATGTGCCTTGTCTTTTGGAACTTCTGCTCTTGACATTACCATAATTGCTCAGGTATATTTGTTCGCTTTTACTTCTTCGTTATATTAAAAATATCTTTTTATTTTTACTAGTACACACTATACATCAAGATAAAAAAAAATTCATATTTTTACTATGACATTTGTGACATGGTGTTAAGAATGATTACTAATATGCTATTATTATATTACAATTTAAACTACATTGATGTTGTTAGAGAAATTCCATACTATTATGTGAATATAACTTAACTTCTAGATTATACTTTTTGTTATAACTATTAATTTTATACTTTACATGTGGTAATTAGGTTATTATTTTACTTTTTTTCATTTTCAAATTCTTAAAAGGCTTAATTCCATGCAGATGGATGAGGAATTTGCAATGACAGTAAAGGATCTTGTCAAAAATTTGCGCTCAGCTCTCAAAGTGTTTATGTGAAGGGGTGTGATCGTTGACCAACTTATCGTAATTTCTTTTAAAGCGTTTGATACAACAAAAGTCATTTTACCGTTTTCTTTTTCCAGTTCTATAATTGGATGTTTAGGGTTGTGAGGTCAAATTCACCTTTTTTTTTTT</genome_strand>
        <mrna_strand>TTGAGGAGCAAACAAAGAAAAAATCAGTGGAATCTGTTGTATTTGTTAAGAAATATGAACTTTATGGAGATGGTGAAAATTCTTCATCAGATGAAAATTACTCAAGTGGTACTGTGCCAGTTGATGAGGCACTCCCAGAAATTGAAGCAAGAATATCTGAAAAAGATGTATTAATTAGAATCCACTGTGAAAAAAGCAAAGGAGTTGTTGAGAAAACAGTTGCTGAAATTGAGAAACTTCATCTATCAGTCATCAATACATGTGCCTTGTCTTTTGGAACTTCTGCTCTTGACATTACCATAATTGCTCAG.............................................................................................................................................................................................................................................................................................................................................ATGGATGAGGAATTTGCAATGACAGTGAAGGATCTTGTCAAAAATTTGCGCTCAGCTCTCAAAGTGTTTATGTGAAGGGGTGTGATCGTTGACCAACTTATCGTAATTTCTTTTAAAGCGTTTGATACAACAAAAGTCATTTTACCGATTTCTTTTTCCAGTTCTATAATTGGATGTTTAGGGTTGTGAGGTCAAATTCACCTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204044" ref_strand="+" ref_description="SGN-E204044 [cLEC-22-I8]">
      <seq>ttgaggagcaaacaaagaaaaaatcagtggaatctgttgtatttgttaagaaatatgaactttatggagatggtgaaaattcttcatcagatgaaaattactcaagtggtactgtgccagttgatgaggcactcccagaaattgaagcaagaatatctgaaaaagatgtattaattagaatccactgtgaaaaaagcaaaggagttgttgagaaaacagttgctgaaattgagaaacttcatctatcagtcatcaatacatgtgccttgtcttttggaacttctgctcttgacattaccataattgctcagatggatgaggaatttgcaatgacagtaaaggatcttgtcaaaaatttgcgctcagctctcaaagtgtttatgtgaaggggtgtgatcgttgaccaacttatcgtaatttcttttaaagcgtttgatacaacaaaagtcattttaccgttttcttttttcagatctataattggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="129477" stop="130896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129777" g_stop="130087" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130088" i_stop="130420" i_length="333">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130421" g_stop="130596" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="487" r_length="176" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E204044" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129777" e_stop="130087"/>
          <exon e_start="130421" e_stop="130596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGAGCAAACAAAGAAAAAATCAGTGGAATCTGTTGTATTTGTTAAGAAATATGAACTTTATGGAGATGGTGAAAATTCTTCATCAGATGAAAATTACTCAAGTGGTACTGTGCCAGTTGATGAGGCACTCCCAGAAATTGAAGCAAGAATATCTGAAAAAGATGTATTAATTAGAATCCACTGTGAAAAAAGCAAAGGAGTTGTTGAGAAAACAGTTGCTGAAATTGAGAAACTTCATCTATCAGTCATCAATACATGTGCCTTGTCTTTTGGAACTTCTGCTCTTGACATTACCATAATTGCTCAGGTATATTTGTTCGCTTTTACTTCTTCGTTATATTAAAAATATCTTTTTATTTTTACTAGTACACACTATACATCAAGATAAAAAAAAATTCATATTTTTACTATGACATTTGTGACATGGTGTTAAGAATGATTACTAATATGCTATTATTATATTACAATTTAAACTACATTGATGTTGTTAGAGAAATTCCATACTATTATGTGAATATAACTTAACTTCTAGATTATACTTTTTGTTATAACTATTAATTTTATACTTTACATGTGGTAATTAGGTTATTATTTTACTTTTTTTCATTTTCAAATTCTTAAAAGGCTTAATTCCATGCAGATGGATGAGGAATTTGCAATGACAGTAAAGGATCTTGTCAAAAATTTGCGCTCAGCTCTCAAAGTGTTTATGTGAAGGGGTGTGATCGTTGACCAACTTATCGTAATTTCTTTTAAAGCGTTTGATACAACAAAAGTCATTTTACCGTTTTCTTTTTCCAGTTCTATAATTGGATG</genome_strand>
        <mrna_strand>TTGAGGAGCAAACAAAGAAAAAATCAGTGGAATCTGTTGTATTTGTTAAGAAATATGAACTTTATGGAGATGGTGAAAATTCTTCATCAGATGAAAATTACTCAAGTGGTACTGTGCCAGTTGATGAGGCACTCCCAGAAATTGAAGCAAGAATATCTGAAAAAGATGTATTAATTAGAATCCACTGTGAAAAAAGCAAAGGAGTTGTTGAGAAAACAGTTGCTGAAATTGAGAAACTTCATCTATCAGTCATCAATACATGTGCCTTGTCTTTTGGAACTTCTGCTCTTGACATTACCATAATTGCTCAG.............................................................................................................................................................................................................................................................................................................................................ATGGATGAGGAATTTGCAATGACAGTAAAGGATCTTGTCAAAAATTTGCGCTCAGCTCTCAAAGTGTTTATGTGAAGGGGTGTGATCGTTGACCAACTTATCGTAATTTCTTTTAAAGCGTTTGATACAACAAAAGTCATTTTACCGTTTTCTTTTTTCAGATCTATAATTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398109" ref_strand="+" ref_description="SGN-E398109 [TUS-14-G15](-)">
      <seq>catcaatacatgtgccttgtcttttggaacttctgttcttgacattaccataattgctcagatggatgaggaatttgcaatgacagtaaaggatcttgtcaaaaatttgcgctcagctctcaaagtgtttatgtgaaggggtgtgatcgttgaccaacttatcgtaatttcttttaaagcgtttgatacaacaaaagtcattttaccgttttctttttccagttctataattggatgtttagggttgtgaggtcaaattcaccttttttttttttcaaaaccaagtcctttgaagcttgtttgccgtggggttaattaagtcatttttttagggaggatttattttttaacctctcatttttgcatggttaaatttgttaatttaccatgttcaatttatccacctattgtaaagatatagttgaccccatggcttaggcattttttttctcttttattataaatatttttccatgaggaaggttgagaaattcaacgtataccaagtggttagagaaaagggacaatacaaggttttatttttttaggggtgaaattagggcatcaagctttgtatcattagtttgatttaatttgtcaatgttttagacatcctcttgaaattatcttcgaatttggagggtctcttttgttgtttatgtaatctcatttggttcatgatatggaataaaaccacacattattgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="129727" stop="131366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130027" g_stop="130087" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130088" i_stop="130420" i_length="333">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130421" g_stop="131074" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="718" r_length="657" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E398109" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130027" e_stop="130087"/>
          <exon e_start="130421" e_stop="131074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATACATGTGCCTTGTCTTTTGGAACTTCTGCTCTTGACATTACCATAATTGCTCAGGTATATTTGTTCGCTTTTACTTCTTCGTTATATTAAAAATATCTTTTTATTTTTACTAGTACACACTATACATCAAGATAAAAAAAAATTCATATTTTTACTATGACATTTGTGACATGGTGTTAAGAATGATTACTAATATGCTATTATTATATTACAATTTAAACTACATTGATGTTGTTAGAGAAATTCCATACTATTATGTGAATATAACTTAACTTCTAGATTATACTTTTTGTTATAACTATTAATTTTATACTTTACATGTGGTAATTAGGTTATTATTTTACTTTTTTTCATTTTCAAATTCTTAAAAGGCTTAATTCCATGCAGATGGATGAGGAATTTGCAATGACAGTAAAGGATCTTGTCAAAAATTTGCGCTCAGCTCTCAAAGTGTTTATGTGAAGGGGTGTGATCGTTGACCAACTTATCGTAATTTCTTTTAAAGCGTTTGATACAACAAAAGTCATTTTACCGTTTTCTTTTTCCAGTTCTATAATTGGATGTTTAGGGTTGTGAGGTCAAATTCACC-TTTTTTTTTTTCAAAACCAAGTCCTTTGAAGCTTGTTTGCCGTGGGGTTAATTAAGTCA-TTTTTTAGGGAGGATTTATTTTTTAACCTCTCATTTTTGCATGGTTAAATTTGTTAATTTACCATGTTCAATTTATCCACCTATTGTAAAGATATAGTTGACCCCATGGCTTAGGCATTTTTTTTCTCTTTTATTATAAATATTTTTCCATGAGGAAGGTTGAGAAATTCAACGTATACCAAGTGGTTAGAGAAAAGGGACAATACAAGGTTTTA-TTTTTTAGGGGTGAAATTAGGGCATCAAGCTTTGTATCATTAGTTTGATTTAATTTGTCAATGTTTTAGACATCCTCTTGAAATTATCTTCGAATTTGGAGGGTCTCTTTTGTTGTTTATGTAATCTCATTTGGTTCATGATATGGAATAAAACCACACATTATTGTCAATCTCTTAA</genome_strand>
        <mrna_strand>CATCAATACATGTGCCTTGTCTTTTGGAACTTCTGTTCTTGACATTACCATAATTGCTCAG.............................................................................................................................................................................................................................................................................................................................................ATGGATGAGGAATTTGCAATGACAGTAAAGGATCTTGTCAAAAATTTGCGCTCAGCTCTCAAAGTGTTTATGTGAAGGGGTGTGATCGTTGACCAACTTATCGTAATTTCTTTTAAAGCGTTTGATACAACAAAAGTCATTTTACCGTTTTCTTTTTCCAGTTCTATAATTGGATGTTTAGGGTTGTGAGGTCAAATTCACCTTTTTTTTTTTTCAAAACCAAGTCCTTTGAAGCTTGTTTGCCGTGGGGTTAATTAAGTCATTTTTTTAGGGAGGATTTATTTTTTAACCTCTCATTTTTGCATGGTTAAATTTGTTAATTTACCATGTTCAATTTATCCACCTATTGTAAAGATATAGTTGACCCCATGGCTTAGGCATTTTTTTTCTCTTTTATTATAAATATTTTTCCATGAGGAAGGTTGAGAAATTCAACGTATACCAAGTGGTTAGAGAAAAGGGACAATACAAGGTTTTATTTTTTTAGGGGTGAAATTAGGGCATCAAGCTTTGTATCATTAGTTTGATTTAATTTGTCAATGTTTTAGACATCCTCTTGAAATTATCTTCGAATTTGGAGGGTCTCTTTTGTTGTTTATGTAATCTCATTTGGTTCATGATATGGAATAAAACCACACATTATTGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398128" ref_strand="+" ref_description="SGN-E398128 [TUS-14-G14](-)">
      <seq>caaagtgtttatgtgaaggggtgtgatggttgaccaacttttcgtaattttcttttaaagcgtttgatacaacaaaagtcattttaccgttttctttttccagttctataattggatgtttagcgcttgtgaggtcaaattcaccttttttttttttcaaaaccaagtcctttgaagcttgtttgccgtggggttaattaagtcatttttttagggaggatttattttttaacctctcatttttgcatggttaaatttgttaatttaccatgttcaatttatccacctattgtaaagatatagttgaccccatggcttaggcattttttttctcttttattataaatatttttccatgaggaaggttgagaaattcaacgtataccaagtggttagagaaaagggacaatacaaggttttatttttttaggggtgaaattagggcatcaagctttgtatcattagtttgatttaatttgtcaatgttttagacatcctcttgaaattatcttcgaatttggagggtctcttttgttgtttatgtaatctcatttggttcatgatatggaataaaaccacacattatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="130180" stop="131366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130480" g_stop="131061" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="599"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E398128" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130480" e_stop="131061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTGTTTATGTGAAGGGGTGTGATCGTTGACCAACTTATCGTAA-TTTCTTTTAAAGCGTTTGATACAACAAAAGTCATTTTACCGTTTTCTTTTTCCAGTTCTATAATTGGATGTTTAG-GGTTGTGAGGTCAAATTCACC-TTTTTTTTTTTCAAAACCAAGTCCTTTGAAGCTTGTTTGCCGTGGGGTTAATTAAGTCA-TTTTTTAGGGAGGATTTATTTTTTAACCTCTCATTTTTGCATGGTTAAATTTGTTAATTTACCATGTTCAATTTATCCACCTATTGTAAAGATATAGTTGACCCCATGGCTTAGGCATTTTTTTTCTCTTTTATTATAAATATTTTTCCATGAGGAAGGTTGAGAAATTCAACGTATACCAAGTGGTTAGAGAAAAGGGACAATACAAGGTTTTA-TTTTTTAGGGGTGAAATTAGGGCATCAAGCTTTGTATCATTAGTTTGATTTAATTTGTCAATGTTTTAGACATCCTCTTGAAATTATCTTCGAATTTGGAGGGTCTCTTTTGTTGTTTATGTAATCTCATTTGGTTCATGATATGGAATAAAACCACACATTATT</genome_strand>
        <mrna_strand>CAAAGTGTTTATGTGAAGGGGTGTGATGGTTGACCAACTTTTCGTAATTTTCTTTTAAAGCGTTTGATACAACAAAAGTCATTTTACCGTTTTCTTTTTCCAGTTCTATAATTGGATGTTTAGCGCTTGTGAGGTCAAATTCACCTTTTTTTTTTTTCAAAACCAAGTCCTTTGAAGCTTGTTTGCCGTGGGGTTAATTAAGTCATTTTTTTAGGGAGGATTTATTTTTTAACCTCTCATTTTTGCATGGTTAAATTTGTTAATTTACCATGTTCAATTTATCCACCTATTGTAAAGATATAGTTGACCCCATGGCTTAGGCATTTTTTTTCTCTTTTATTATAAATATTTTTCCATGAGGAAGGTTGAGAAATTCAACGTATACCAAGTGGTTAGAGAAAAGGGACAATACAAGGTTTTATTTTTTTAGGGGTGAAATTAGGGCATCAAGCTTTGTATCATTAGTTTGATTTAATTTGTCAATGTTTTAGACATCCTCTTGAAATTATCTTCGAATTTGGAGGGTCTCTTTTGTTGTTTATGTAATCTCATTTGGTTCATGATATGGAATAAAACCACACATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393071" ref_strand="+" ref_description="SGN-E393071 [TUS-37-H16](-)">
      <seq>ttttaaagcgtttgatacaacaaaagtcattttaccgttttctttttccagttctataattggatgtttagggttgtgaggtcaaattcaccttttttttttttcaaaaccaagtcctttgaagcttgtttgccgtggggttaattaagtcatttttttagggaggatttattttttaacctctcatttttgcatggttaaatttgttaatttaccatgttcaatttatccacctattgtaaagatatagttgaccccatggcttaggcattttttttctcttttattataaatatttttccatgaggaaggttgagaaattcaacgtataccaagtggttagagaaaagggacaatacaaggttttatttttttaggggtgaaattagggcatcaagctttgtatcattagtttgatttaatttgtcaatgttttagacatcctcttgaaattatcttcgaatttggagggtctcttttgttgtttatgtaatctcatttggttcatgatatggaataaaaccacacattataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="130231" stop="131360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130531" g_stop="131061" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="553"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E393071" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130531" e_stop="131061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAAGCGTTTGATACAACAAAAGTCATTTTACCGTTTTCTTTTTCCAGTTCTATAATTGGATGTTTAGGGTTGTGAGGTCAAATTCACC-TTTTTTTTTTTCAAAACCAAGTCCTTTGAAGCTTGTTTGCCGTGGGGTTAATTAAGTCA-TTTTTTAGGGAGGATTTATTTTTTAACCTCTCATTTTTGCATGGTTAAATTTGTTAATTTACCATGTTCAATTTATCCACCTATTGTAAAGATATAGTTGACCCCATGGCTTAGGCATTTTTTTTCTCTTTTATTATAAATATTTTTCCATGAGGAAGGTTGAGAAATTCAACGTATACCAAGTGGTTAGAGAAAAGGGACAATACAAGGTTTTA-TTTTTTAGGGGTGAAATTAGGGCATCAAGCTTTGTATCATTAGTTTGATTTAATTTGTCAATGTTTTAGACATCCTCTTGAAATTATCTTCGAATTTGGAGGGTCTCTTTTGTTGTTTATGTAATCTCATTTGGTTCATGATATGGAATAAAACCACACATTATT</genome_strand>
        <mrna_strand>TTTTAAAGCGTTTGATACAACAAAAGTCATTTTACCGTTTTCTTTTTCCAGTTCTATAATTGGATGTTTAGGGTTGTGAGGTCAAATTCACCTTTTTTTTTTTTCAAAACCAAGTCCTTTGAAGCTTGTTTGCCGTGGGGTTAATTAAGTCATTTTTTTAGGGAGGATTTATTTTTTAACCTCTCATTTTTGCATGGTTAAATTTGTTAATTTACCATGTTCAATTTATCCACCTATTGTAAAGATATAGTTGACCCCATGGCTTAGGCATTTTTTTTCTCTTTTATTATAAATATTTTTCCATGAGGAAGGTTGAGAAATTCAACGTATACCAAGTGGTTAGAGAAAAGGGACAATACAAGGTTTTATTTTTTTAGGGGTGAAATTAGGGCATCAAGCTTTGTATCATTAGTTTGATTTAATTTGTCAATGTTTTAGACATCCTCTTGAAATTATCTTCGAATTTGGAGGGTCTCTTTTGTTGTTTATGTAATCTCATTTGGTTCATGATATGGAATAAAACCACACATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201889" ref_strand="+" ref_description="SGN-E201889 [cLEC-18-G3]">
      <seq>caagcttcaaaggacttggttgccgtggggttaattaaatcctccctaaaaaatgacttaattaacccctcatttttgcatggttaaatttgttaatttaccatgttcaatttatccacctattgtaaagatatagttgaccccatggcttaggcattttttttctcttttattataaatatttttccatgaggaaggttgagaaattcaacgtataccaagtggttagagaaaagggacaatacaaggttttatttttttaggggtgaaattagggcatcaagctttgtatcattagtttgatttaatttgtcaatgttttagacatcctcttgaaattatcttcgaatttggagggtctcttttgttgtttatgtaatctcatttggttcatgatatggaataaaaccacacattattgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="130346" stop="131366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130640" g_stop="131074" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E201889" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130640" e_stop="131074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAG-TCCTTTGAAGCTTGTTTGCCGTGGGGTTAATTAAGTCATTTTTTAGGGAGGATTTATTTTTTAACCTCTCATTTTTGCATGGTTAAATTTGTTAATTTACCATGTTCAATTTATCCACCTATTGTAAAGATATAGTTGACCCCATGGCTTAGGCATTTTTTTTCTCTTTTATTATAAATATTTTTCCATGAGGAAGGTTGAGAAATTCAACGTATACCAAGTGGTTAGAGAAAAGGGACAATACAAGGTTTTA-TTTTTTAGGGGTGAAATTAGGGCATCAAGCTTTGTATCATTAGTTTGATTTAATTTGTCAATGTTTTAGACATCCTCTTGAAATTATCTTCGAATTTGGAGGGTCTCTTTTGTTGTTTATGTAATCTCATTTGGTTCATGATATGGAATAAAACCACACATTATTGTCAATCTCTTAA</genome_strand>
        <mrna_strand>CAAGCTTCAAAGGA-CTTGGTTGCCGTGGGGTTAATTAAATCCTCCCTAAAAAATGACTTA---ATTAACCCCTCATTTTTGCATGGTTAAATTTGTTAATTTACCATGTTCAATTTATCCACCTATTGTAAAGATATAGTTGACCCCATGGCTTAGGCATTTTTTTTCTCTTTTATTATAAATATTTTTCCATGAGGAAGGTTGAGAAATTCAACGTATACCAAGTGGTTAGAGAAAAGGGACAATACAAGGTTTTATTTTTTTAGGGGTGAAATTAGGGCATCAAGCTTTGTATCATTAGTTTGATTTAATTTGTCAATGTTTTAGACATCCTCTTGAAATTATCTTCGAATTTGGAGGGTCTCTTTTGTTGTTTATGTAATCTCATTTGGTTCATGATATGGAATAAAACCACACATTATTGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364923" ref_strand="+" ref_description="SGN-E364923 [cLPP-17-G23]">
      <seq>aagaaataaagaaataagaagaagaagaatccatctcttaagcattacttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttccaattatttatcaatggatttgagacgatcatcccgttgttgttatctctttgccatctttattcttgccattgctgttcggttttctctatctgcagcttccatcgctggcaaagatatgaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgagggatgctcttgtgggtaggtcggtgtcttatgagtttgatgttgaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggttggtcgaaaggcagacattggagaatcaggtgcctgttttggctccatttactttggcaggtcccatggagctctggatccaggatgccaaggacatgagaatttcattacctcatgatgtggatgctggggagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136725" stop="139070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137027" g_stop="137289" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="268" r_length="263" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137979" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="604" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137980" i_stop="138745" i_length="766">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138746" g_stop="138770" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="629" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E364923" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137027" e_stop="137289"/>
          <exon e_start="137644" e_stop="137979"/>
          <exon e_start="138746" e_stop="138770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAATAAGAAGAAGAAGAATCCATCTCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCTGTAAGTCTTTTGAAAGCTAGCTTTCTTATTTGATATATTCAGCAACAAAATTTGTTTTTTAATAGTAGTCCTCTATCGCAATGTTGAATGTTTTTCTCCTCTTTTTGGCTCTATATTTTGTTTTCTTATGAGTTCTAATACCTTAGGATGCATGGTATTCCTATATGTTTAGTTGCGAGAGACGCTCTTGTCGTGTTCCTTTTCTTTTTGGTGTTTCAAGAGAGTCTGCTATTGCTGTTAACCCAGAAAAGAGTCTTCTTTTGCTTATATAGTTATGGAAGGACCCCTGTTCAGACATGTGTGCTTCTCCGAGTTTTAAGCTGGAAAGCACTTCCTCAATGACAGTATAATCTTCCATTGGTTTCATGTGCAATGATGGCCTTTACTCTTATTGATAAGCATTGATCATGTTGTGTAGGACATTTGCTGCTGTAGGTTTTATTGGACTGAAAATAGGATTCCTGTCTTGTTGGTGGATTTTAGTTGAATTACTTTAGTACGTTAGATTGACGTTCTATATCTGTCCTGGGAAATAGAGTCACTCTACTGAAATCTTGATAGCTTAACTATCCGAAGTTCACTTAAATATGGCTTACCAAGATTCAGTTTGTTTTATGTGTTGATTGTCTTTCTTCAGTTAGTTGTCTGCACTCTACCACTTGTCTAAGTAAATATTAAAATGATTTGAAGTTATAAATGTTCTATTTTTTTGCTAATTTTCATGTCACTGATCTACTCTGCTTCTGTTCTTGGTAACGACATGCAGCATGATGTGGATGCTGGGGAGTTGA</genome_strand>
        <mrna_strand>ATAAAGAAATAAGAAGAAGAAGAATCCATCTCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCCAATTATTTATCAATGGATTTGAGACGATCATCCCGTTGTTGTTATCTCTTTGCCATCTTTATTCTTGCCATTGCTGTTCGGTTTTCTCTATCTGCAGCTTCCATCGCTGGCAAAGATATGAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAGGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTTGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTCGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTCTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGTGGATGCTGGGGAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360716" ref_strand="+" ref_description="SGN-E360716 [cLPP-7-P16]">
      <seq>aaataagaagaagaagaatccatctcttaagcattacttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttccaattatttatcaatggatttgagacgatcatcccgttgttgttatctctttgccatctttattcttgccattgctgttcggttttctctatctgcagcttccatcgctggcaaagatatgaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgagggatgctcttgtgggtaggtcggtgtcttatgagtttgatgttgaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggttggtcgaaaggcagacattggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136733" stop="138191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137033" g_stop="137289" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137891" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="505" r_length="248" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E360716" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137033" e_stop="137289"/>
          <exon e_start="137644" e_stop="137891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAGAAGAAGAAGAATCCATCTCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAA</genome_strand>
        <mrna_strand>AAATAAGAAGAAGAAGAATCCATCTCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCCAATTATTTATCAATGGATTTGAGACGATCATCCCGTTGTTGTTATCTCTTTGCCATCTTTATTCTTGCCATTGCTGTTCGGTTTTCTCTATCTGCAGCTTCCATCGCTGGCAAAGATATGAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAGGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTTGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTCGAAAGGCAGACATTGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260223" ref_strand="+" ref_description="SGN-E260223 [cLEG-53-O7]">
      <seq>aataagaagaagaagaatccatctcttaagcattacttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttcaaattatttatcaatggatttgagacgatcatctcgttgttgttatctctttgccatatttattcttgccattgctgtctggttttctccatctgcagcttccatcgctggcaaagatattaatcctccatatcctaaagctatttctgacttgaaggagtcaattgaaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgaaggatgctcttgtgggtaggtcggtgtcttatgagtttgatgtggaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttggaaatttgcctatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136734" stop="138139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137034" g_stop="137289" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137839" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="452" r_length="196" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E260223" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137034" e_stop="137289"/>
          <exon e_start="137644" e_stop="137839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGAAGAAGAAGAATCCATCTCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTC</genome_strand>
        <mrna_strand>AATAAGAAGAAGAAGAATCCATCTCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGAAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGGAAATTTGCCTATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728437" ref_strand="+" ref_description="SGN-E728437 [LA17DC09]">
      <seq>gaagaatccatctcttaagcattacttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttcaaattatttatcaatggatttgagacgatcatctcgttgttgttatctctttgccatatttattcttgccattgctgtctggttttctccatctgcagcttccatcgctggcaaagatattaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgaaggatgctcttgtgggtaggtcggtgtcttatgagtttgatgtggaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggttggttgaaaggcagacattggagaatcaggtgcctgttttggctccatttactttggcaggtcccatggagctgtggatccaggatgccaaggacatgagaatttcattacctcatgatgtggatgctggggagttgaggaaagtgattttagccgatggtgctgtcgttactgtcaagggtgccagatctgttagcctgcggcaccctatagaacttccactgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136745" stop="139160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137045" g_stop="137289" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137979" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="581" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137980" i_stop="138745" i_length="766">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138746" g_stop="138860" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="696" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E728437" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137045" e_stop="137289"/>
          <exon e_start="137644" e_stop="137979"/>
          <exon e_start="138746" e_stop="138860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAATCCATCTCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCTGTAAGTCTTTTGAAAGCTAGCTTTCTTATTTGATATATTCAGCAACAAAATTTGTTTTTTAATAGTAGTCCTCTATCGCAATGTTGAATGTTTTTCTCCTCTTTTTGGCTCTATATTTTGTTTTCTTATGAGTTCTAATACCTTAGGATGCATGGTATTCCTATATGTTTAGTTGCGAGAGACGCTCTTGTCGTGTTCCTTTTCTTTTTGGTGTTTCAAGAGAGTCTGCTATTGCTGTTAACCCAGAAAAGAGTCTTCTTTTGCTTATATAGTTATGGAAGGACCCCTGTTCAGACATGTGTGCTTCTCCGAGTTTTAAGCTGGAAAGCACTTCCTCAATGACAGTATAATCTTCCATTGGTTTCATGTGCAATGATGGCCTTTACTCTTATTGATAAGCATTGATCATGTTGTGTAGGACATTTGCTGCTGTAGGTTTTATTGGACTGAAAATAGGATTCCTGTCTTGTTGGTGGATTTTAGTTGAATTACTTTAGTACGTTAGATTGACGTTCTATATCTGTCCTGGGAAATAGAGTCACTCTACTGAAATCTTGATAGCTTAACTATCCGAAGTTCACTTAAATATGGCTTACCAAGATTCAGTTTGTTTTATGTGTTGATTGTCTTTCTTCAGTTAGTTGTCTGCACTCTACCACTTGTCTAAGTAAATATTAAAATGATTTGAAGTTATAAATGTTCTATTTTTTTGCTAATTTTCATGTCACTGATCTACTCTGCTTCTGTTCTTGGTAACGACATGCAGCATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCT</genome_strand>
        <mrna_strand>GAAGAATCCATCTCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709342" ref_strand="+" ref_description="SGN-E709342 [FA51CA11]">
      <seq>gaatccatctcttaagcattacttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttcaaattatttatcaatggatttgagacgatcatctcgttgttgttatctctttgccatatttattcttgccattgctgtctggttttctccatctgcagcttccatcgctggcaaagatattaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgaaggatgctcttgtgggtaggtcggtgtcttatgagtttgatgtggaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggttggttgaaaggcagacattggagaatcaggtgcctgttttggctccatttactttggcaggtcccatggagctgtggatccaggatgccaaggacatgagaatttcattacctcatgatgtggatgctggggagttgaggaaagtgattttagccgatggtgctgtcgttactgtcaagggtgccagatctgttagcctgcggcaccctataaaacttccactgcccttcaacagaacgataaatggctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136748" stop="139184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137048" g_stop="137289" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137979" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="578" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137980" i_stop="138745" i_length="766">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138746" g_stop="138884" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="717" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E709342" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137048" e_stop="137289"/>
          <exon e_start="137644" e_stop="137979"/>
          <exon e_start="138746" e_stop="138884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCATCTCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCTGTAAGTCTTTTGAAAGCTAGCTTTCTTATTTGATATATTCAGCAACAAAATTTGTTTTTTAATAGTAGTCCTCTATCGCAATGTTGAATGTTTTTCTCCTCTTTTTGGCTCTATATTTTGTTTTCTTATGAGTTCTAATACCTTAGGATGCATGGTATTCCTATATGTTTAGTTGCGAGAGACGCTCTTGTCGTGTTCCTTTTCTTTTTGGTGTTTCAAGAGAGTCTGCTATTGCTGTTAACCCAGAAAAGAGTCTTCTTTTGCTTATATAGTTATGGAAGGACCCCTGTTCAGACATGTGTGCTTCTCCGAGTTTTAAGCTGGAAAGCACTTCCTCAATGACAGTATAATCTTCCATTGGTTTCATGTGCAATGATGGCCTTTACTCTTATTGATAAGCATTGATCATGTTGTGTAGGACATTTGCTGCTGTAGGTTTTATTGGACTGAAAATAGGATTCCTGTCTTGTTGGTGGATTTTAGTTGAATTACTTTAGTACGTTAGATTGACGTTCTATATCTGTCCTGGGAAATAGAGTCACTCTACTGAAATCTTGATAGCTTAACTATCCGAAGTTCACTTAAATATGGCTTACCAAGATTCAGTTTGTTTTATGTGTTGATTGTCTTTCTTCAGTTAGTTGTCTGCACTCTACCACTTGTCTAAGTAAATATTAAAATGATTTGAAGTTATAAATGTTCTATTTTTTTGCTAATTTTCATGTCACTGATCTACTCTGCTTCTGTTCTTGGTAACGACATGCAGCATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCTTCAACAGAACGATAAATGGCTTTG</genome_strand>
        <mrna_strand>GAATCCATCTCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTATAAAACTTCCACTGCCCTTCAACAGAACGATAAATGGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317301" ref_strand="+" ref_description="SGN-E317301 [cTOA-28-J4]">
      <seq>atctcttaagcattacttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttcaaattatttatcaatggatttgagacgatcatctcgttgttgttatctctttgccatatttattcttgccattgctgtctggttttctccatctgcagcttccatcgctggcaaagatattaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgaaggatgctcttgtgggtaggtcggtgtcttatgagtttgatgtggaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggttggttgaaaggcagacattggagaatcaggtgcctgttttggctccatttactttggcaggtcccatggagctgtggatccaggatgccanggacatgagaatttcattacctcatgatgtggatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136754" stop="138279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137054" g_stop="137289" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137979" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="572" r_length="336" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E317301" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137054" e_stop="137289"/>
          <exon e_start="137644" e_stop="137979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT</genome_strand>
        <mrna_strand>ATCTCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCANGGACATGAGAATTTCATTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317228" ref_strand="+" ref_description="SGN-E317228 [cTOA-28-I18]">
      <seq>atctcttaagcattacttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttcaaattatttatcaatggatttgagacgatcatctcgttgttgttatctctttgccatatttattcttgccattgctgtctggttttctccatctgcagcttccatcgctggcaaagatattaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgaaggatgctcttgtgggtaggtcggtgtcttatgagtttgatgtggaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggttggttgaaaggcagacattggagaatcaggtgcctgttttggctccatttactttggcaggtcccatggagctgtggatccaggatgccaaggacatgagaatttcattacctcatgatgtggatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136754" stop="138279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137054" g_stop="137289" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137979" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="572" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E317228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137054" e_stop="137289"/>
          <exon e_start="137644" e_stop="137979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT</genome_strand>
        <mrna_strand>ATCTCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313401" ref_strand="+" ref_description="SGN-E313401 [cTOA-13-O19]">
      <seq>tcttaagcattacttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttcaaattatttatcaatggatttgagacgatcatctcgttgttgttatctctttgccatatttattcttgccattgctgtctggttttctccatctgcagcttccatcgctggcaaagatattaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgaaggatgctcttgtgggtaggtcggtgtcttatgagtttgatgtggaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136757" stop="138168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137057" g_stop="137289" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137868" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="458" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E313401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137057" e_stop="137289"/>
          <exon e_start="137644" e_stop="137868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTG</genome_strand>
        <mrna_strand>TCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317608" ref_strand="+" ref_description="SGN-E317608 [cTOB-8-A4]">
      <seq>tcttaagcattacttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttcaaattatttatcaatggatttgagacgatcatctcgttgttgttatctctttgccatatttattcttgccattgctgtctggttttctccatctgcagcttccatcgctggcaaagatattaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtgaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgaaagatgctcttgtgggtaggtcggtgtcttatgagtttgatgtggaagttgataataaaggaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136757" stop="138166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137057" g_stop="137289" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137866" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="456" r_length="223" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E317608" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137057" e_stop="137289"/>
          <exon e_start="137644" e_stop="137866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGT</genome_strand>
        <mrna_strand>TCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTGAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAAGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGGAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316652" ref_strand="+" ref_description="SGN-E316652 [cTOB-7-B1]">
      <seq>tcttaagcattacttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttcaaattatttatcaatggatttgagacgatcatctcgttgttgttatctctttgccatatttattcttgccattgctgtctggttttctccatctgcagcttccatcgctggcaaagatattaatcctccatatcctaaagctatttctgacttgaaggagtcaattgttaagggtttaaggtttcaagcggaggatttcaagatatttgggtttgatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136757" stop="138016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137057" g_stop="137289" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137716" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="306" r_length="73" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E316652" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137057" e_stop="137289"/>
          <exon e_start="137644" e_stop="137716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGA</genome_strand>
        <mrna_strand>TCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTTAAGGGTTTAAGGTTTCAAGCGGAGGATTTCAAGATATTTGGGTTTGATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705848" ref_strand="+" ref_description="SGN-E705848 [FA28BC07]">
      <seq>cttaagcattacttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttcaaattatttatcaatggatttgagacgatcatctcgttgttgttatctctttgccatatttattcttgccattgctgtctggttttctccatctgcagcttccatcgctggcaaagatattaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgaaggatgctcttgtgggtaggtcggtgtcttatgagtttgatgtggaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggttggttgaaaggcagacattggagaatcaggtgcctgttttggctccatttactttggcaggtcccatggagctgtggatccaggatgccaaggacatgagaatttcattacctcatgatgtggatgctggggagttgaggaaagtgattttagccgatggtgctgtcgttactgtcaagggtgccagatctgttagcctgcggcaccctatagaacttccactgcccttcaacagaacgataaatggctttgcctctggtatgttggcattggctgaatatctacgtcaagcttctctcgctcaagagggacctctcctctctcttagaattgttggtcctacatctcttacatcccccacctcaccatctgccccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136758" stop="139311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137058" g_stop="137289" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137979" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="568" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137980" i_stop="138745" i_length="766">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138746" g_stop="139011" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="834" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E705848" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137058" e_stop="137289"/>
          <exon e_start="137644" e_stop="137979"/>
          <exon e_start="138746" e_stop="139011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCTGTAAGTCTTTTGAAAGCTAGCTTTCTTATTTGATATATTCAGCAACAAAATTTGTTTTTTAATAGTAGTCCTCTATCGCAATGTTGAATGTTTTTCTCCTCTTTTTGGCTCTATATTTTGTTTTCTTATGAGTTCTAATACCTTAGGATGCATGGTATTCCTATATGTTTAGTTGCGAGAGACGCTCTTGTCGTGTTCCTTTTCTTTTTGGTGTTTCAAGAGAGTCTGCTATTGCTGTTAACCCAGAAAAGAGTCTTCTTTTGCTTATATAGTTATGGAAGGACCCCTGTTCAGACATGTGTGCTTCTCCGAGTTTTAAGCTGGAAAGCACTTCCTCAATGACAGTATAATCTTCCATTGGTTTCATGTGCAATGATGGCCTTTACTCTTATTGATAAGCATTGATCATGTTGTGTAGGACATTTGCTGCTGTAGGTTTTATTGGACTGAAAATAGGATTCCTGTCTTGTTGGTGGATTTTAGTTGAATTACTTTAGTACGTTAGATTGACGTTCTATATCTGTCCTGGGAAATAGAGTCACTCTACTGAAATCTTGATAGCTTAACTATCCGAAGTTCACTTAAATATGGCTTACCAAGATTCAGTTTGTTTTATGTGTTGATTGTCTTTCTTCAGTTAGTTGTCTGCACTCTACCACTTGTCTAAGTAAATATTAAAATGATTTGAAGTTATAAATGTTCTATTTTTTTGCTAATTTTCATGTCACTGATCTACTCTGCTTCTGTTCTTGGTAACGACATGCAGCATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCTTCAACAGAACGATAAATGGCTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCTCGCTCAAGAGGGACCTCTCCTCTCTCTTAGAATTGTTGGTCCTACATCTCTTACATCCCCCACCTCACCATCTGCCCCTTC</genome_strand>
        <mrna_strand>CTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCTTCAACAGAACGATAAATGGCTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCTCGCTCAAGAGGGACCTCTCCTCTCTCTTAGAATTGTTGGTCCTACATCTCTTACATCCCCCACCTCACCATCTGCCCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327873" ref_strand="+" ref_description="SGN-E327873 [cTOC-22-I23]">
      <seq>ttaagcattacttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttcaaattatttatcaatggatttgagacgatcatctcgttgttgttatctctttgccatatttattcttgccattgctgtctggttttctccatctgcagcttccatcgctggcaaagatattaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgaaggatgctcttgtgggtaggtcggtgtcttatgagtttgatgtggaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggttggttgaaaggcagacattggagaatcaggtgcctgttttggctccatttactttggcaggtcccatggagctgtggatccaggatgccaaggacatgagaatttcattacctcatgatgtggatgctggggagttgaggaaagtgattttagccgatggtgctgtcgttactgtcaagggtgccagatctgttagcctgcggcaccctatagaacttccactgcccttcaacagaacgataaatggctttgcctctggtatgttggcattggctgaatatctacgtcaagcttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136759" stop="139230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137059" g_stop="137289" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137979" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="567" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137980" i_stop="138745" i_length="766">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138746" g_stop="138930" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="752" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E327873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137059" e_stop="137289"/>
          <exon e_start="137644" e_stop="137979"/>
          <exon e_start="138746" e_stop="138930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCTGTAAGTCTTTTGAAAGCTAGCTTTCTTATTTGATATATTCAGCAACAAAATTTGTTTTTTAATAGTAGTCCTCTATCGCAATGTTGAATGTTTTTCTCCTCTTTTTGGCTCTATATTTTGTTTTCTTATGAGTTCTAATACCTTAGGATGCATGGTATTCCTATATGTTTAGTTGCGAGAGACGCTCTTGTCGTGTTCCTTTTCTTTTTGGTGTTTCAAGAGAGTCTGCTATTGCTGTTAACCCAGAAAAGAGTCTTCTTTTGCTTATATAGTTATGGAAGGACCCCTGTTCAGACATGTGTGCTTCTCCGAGTTTTAAGCTGGAAAGCACTTCCTCAATGACAGTATAATCTTCCATTGGTTTCATGTGCAATGATGGCCTTTACTCTTATTGATAAGCATTGATCATGTTGTGTAGGACATTTGCTGCTGTAGGTTTTATTGGACTGAAAATAGGATTCCTGTCTTGTTGGTGGATTTTAGTTGAATTACTTTAGTACGTTAGATTGACGTTCTATATCTGTCCTGGGAAATAGAGTCACTCTACTGAAATCTTGATAGCTTAACTATCCGAAGTTCACTTAAATATGGCTTACCAAGATTCAGTTTGTTTTATGTGTTGATTGTCTTTCTTCAGTTAGTTGTCTGCACTCTACCACTTGTCTAAGTAAATATTAAAATGATTTGAAGTTATAAATGTTCTATTTTTTTGCTAATTTTCATGTCACTGATCTACTCTGCTTCTGTTCTTGGTAACGACATGCAGCATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCTTCAACAGAACGATAAATGGCTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCT</genome_strand>
        <mrna_strand>TTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCTTCAACAGAACGATAAATGGCTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331212" ref_strand="+" ref_description="SGN-E331212 [cTOD-6-K19]">
      <seq>ttaagcattacttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttcaaattatttatcaatggatttgagacgatcatctcgttgttgttatctctttgccatatttattcttgccattgctgtctggttttctccatctgcagcttccatcgctggcaaagatattaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgaaggatgctcttgtgggtaggtcggtgtcttatgagtttgatgtggaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggttggttgaaaggcagacattggagaatcaggtgcctgttttggctccatttactttggcaggtcccatggagctgtggatccaggatgccaaagacatgagaatttcattacctcatgatgtggatgctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136759" stop="139063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137059" g_stop="137289" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137979" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="567" r_length="336" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137980" i_stop="138745" i_length="766">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138746" g_stop="138763" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="585" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E331212" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137059" e_stop="137289"/>
          <exon e_start="137644" e_stop="137979"/>
          <exon e_start="138746" e_stop="138763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCTGTAAGTCTTTTGAAAGCTAGCTTTCTTATTTGATATATTCAGCAACAAAATTTGTTTTTTAATAGTAGTCCTCTATCGCAATGTTGAATGTTTTTCTCCTCTTTTTGGCTCTATATTTTGTTTTCTTATGAGTTCTAATACCTTAGGATGCATGGTATTCCTATATGTTTAGTTGCGAGAGACGCTCTTGTCGTGTTCCTTTTCTTTTTGGTGTTTCAAGAGAGTCTGCTATTGCTGTTAACCCAGAAAAGAGTCTTCTTTTGCTTATATAGTTATGGAAGGACCCCTGTTCAGACATGTGTGCTTCTCCGAGTTTTAAGCTGGAAAGCACTTCCTCAATGACAGTATAATCTTCCATTGGTTTCATGTGCAATGATGGCCTTTACTCTTATTGATAAGCATTGATCATGTTGTGTAGGACATTTGCTGCTGTAGGTTTTATTGGACTGAAAATAGGATTCCTGTCTTGTTGGTGGATTTTAGTTGAATTACTTTAGTACGTTAGATTGACGTTCTATATCTGTCCTGGGAAATAGAGTCACTCTACTGAAATCTTGATAGCTTAACTATCCGAAGTTCACTTAAATATGGCTTACCAAGATTCAGTTTGTTTTATGTGTTGATTGTCTTTCTTCAGTTAGTTGTCTGCACTCTACCACTTGTCTAAGTAAATATTAAAATGATTTGAAGTTATAAATGTTCTATTTTTTTGCTAATTTTCATGTCACTGATCTACTCTGCTTCTGTTCTTGGTAACGACATGCAGCATGATGTGGATGCTGGG</genome_strand>
        <mrna_strand>TTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAAGACATGAGAATTTCATTACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGTGGATGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365217" ref_strand="+" ref_description="SGN-E365217 [cLPP-17-N12]">
      <seq>ttaagcattacttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttccaattatttatcaatggatttgagacgatcatcccgttgttgttatctctttgccatctttattcttgccattgctgttcggttttctctatctgcagcttccatcgctggcaaagatatgaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgagggatgctcttgtgggtaggtcggtgtcttatgagtttgatgttgaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136759" stop="138120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137059" g_stop="137289" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137820" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="408" r_length="177" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E365217" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137059" e_stop="137289"/>
          <exon e_start="137644" e_stop="137820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTT</genome_strand>
        <mrna_strand>TTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCCAATTATTTATCAATGGATTTGAGACGATCATCCCGTTGTTGTTATCTCTTTGCCATCTTTATTCTTGCCATTGCTGTTCGGTTTTCTCTATCTGCAGCTTCCATCGCTGGCAAAGATATGAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAGGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTTGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343615" ref_strand="+" ref_description="SGN-E343615 [cTOF-20-D9]">
      <seq>attacttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttcaaattatttatcaatggatttgagacgatcatctcgttgttgttatctctttgccatatttattcttgccattgctgtctggttttctccatctgcagcttccatcgctggcaaagatattaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgaaggatgctcttgtgggtaggtcggtgtcttatgagtttgatgtggaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggttggttgaaaggcagacattggagaatcaggtgcctgttttggctccatttactttggcaggtcccatggagctngtggatccaggatgccaaggacatgagaatttcattacctcatgatgtggatgctgggggagttgaagaaagtgattttagccgatggtgctgtcgttactgtcaagggtgcccagatctgttagcctgcggcaccctatagaacttccactgcccttcaacagacgataaatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136765" stop="139181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137065" g_stop="137289" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137979" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="562" r_length="337" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137980" i_stop="138745" i_length="766">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.942" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138746" g_stop="138881" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="699" r_length="137" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E343615" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137065" e_stop="137289"/>
          <exon e_start="137644" e_stop="137979"/>
          <exon e_start="138746" e_stop="138881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCT-GTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCTGTAAGTCTTTTGAAAGCTAGCTTTCTTATTTGATATATTCAGCAACAAAATTTGTTTTTTAATAGTAGTCCTCTATCGCAATGTTGAATGTTTTTCTCCTCTTTTTGGCTCTATATTTTGTTTTCTTATGAGTTCTAATACCTTAGGATGCATGGTATTCCTATATGTTTAGTTGCGAGAGACGCTCTTGTCGTGTTCCTTTTCTTTTTGGTGTTTCAAGAGAGTCTGCTATTGCTGTTAACCCAGAAAAGAGTCTTCTTTTGCTTATATAGTTATGGAAGGACCCCTGTTCAGACATGTGTGCTTCTCCGAGTTTTAAGCTGGAAAGCACTTCCTCAATGACAGTATAATCTTCCATTGGTTTCATGTGCAATGATGGCCTTTACTCTTATTGATAAGCATTGATCATGTTGTGTAGGACATTTGCTGCTGTAGGTTTTATTGGACTGAAAATAGGATTCCTGTCTTGTTGGTGGATTTTAGTTGAATTACTTTAGTACGTTAGATTGACGTTCTATATCTGTCCTGGGAAATAGAGTCACTCTACTGAAATCTTGATAGCTTAACTATCCGAAGTTCACTTAAATATGGCTTACCAAGATTCAGTTTGTTTTATGTGTTGATTGTCTTTCTTCAGTTAGTTGTCTGCACTCTACCACTTGTCTAAGTAAATATTAAAATGATTTGAAGTTATAAATGTTCTATTTTTTTGCTAATTTTCATGTCACTGATCTACTCTGCTTCTGTTCTTGGTAACGACATGCAGCATGATGTGGATGCT-GGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTG-CCAGATCTGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCTTCAACAGAACGATAAATGGCT</genome_strand>
        <mrna_strand>ATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTNGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGTGGATGCTGGGGGAGTTGAAGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCCAGATCTGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCTTCAACAG-ACGATAAATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341281" ref_strand="+" ref_description="SGN-E341281 [cTOE-22-F7]">
      <seq>cttgagatttgagaatttcccattctattccattattttttgagacatcaaatctcctgttccttagaatttcaaattatttatcaatggatttgagacgatcatctcgttgttgttatctctttgccatatttattcttgccattgctgtctggttttctccatctgcagcttccatcgctggcaaagatattaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgaaggatgctcttgtgggtaggtcggtgtcttatgagtttgatgtggaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggttggttgaaaggcagacattggagaatcaggtgcctgttttggctccatttactttggcaggtcccatggagctgtggatccaggatgccaaggacatgagaatttcattacctcatgatgtggatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136769" stop="138279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137069" g_stop="137289" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137979" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="557" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E341281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137069" e_stop="137289"/>
          <exon e_start="137644" e_stop="137979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT</genome_strand>
        <mrna_strand>CTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332348" ref_strand="+" ref_description="SGN-E332348 [cTOD-17-J16]">
      <seq>agacatcaaatctcctgttccttagaatttcaaattatttatcaatggatttgagacgatcatctcgttgttgttatctctttgccatatttattcttgccattgctgtctggttttctccatctgcagcttccatcgctggcaaagatattaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgaaggatgctcttgtgggtaggtcggtgtcttatgagtttgatgtggaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggttggttgaaaggcagacattggagaatcaggtgcctgttttggctccatttactttggcaggtcccatggagctgtggatccaggatgccaaggacatgagaatttcattacctcatgatgtggatgctggggagttgaggaaagtgattttagccgatggtgctgtcgttactgtcaagggtgccagatctgttagcctgcggcaccctatagaacttccactgcccttncacagaacgataaatggctttgcctctggtatgttggcattggctgaatatctacgtcaagcttctctcgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136811" stop="139236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137111" g_stop="137289" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137979" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="515" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137980" i_stop="138745" i_length="766">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138746" g_stop="138936" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="706" r_length="191" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E332348" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137111" e_stop="137289"/>
          <exon e_start="137644" e_stop="137979"/>
          <exon e_start="138746" e_stop="138936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCTGTAAGTCTTTTGAAAGCTAGCTTTCTTATTTGATATATTCAGCAACAAAATTTGTTTTTTAATAGTAGTCCTCTATCGCAATGTTGAATGTTTTTCTCCTCTTTTTGGCTCTATATTTTGTTTTCTTATGAGTTCTAATACCTTAGGATGCATGGTATTCCTATATGTTTAGTTGCGAGAGACGCTCTTGTCGTGTTCCTTTTCTTTTTGGTGTTTCAAGAGAGTCTGCTATTGCTGTTAACCCAGAAAAGAGTCTTCTTTTGCTTATATAGTTATGGAAGGACCCCTGTTCAGACATGTGTGCTTCTCCGAGTTTTAAGCTGGAAAGCACTTCCTCAATGACAGTATAATCTTCCATTGGTTTCATGTGCAATGATGGCCTTTACTCTTATTGATAAGCATTGATCATGTTGTGTAGGACATTTGCTGCTGTAGGTTTTATTGGACTGAAAATAGGATTCCTGTCTTGTTGGTGGATTTTAGTTGAATTACTTTAGTACGTTAGATTGACGTTCTATATCTGTCCTGGGAAATAGAGTCACTCTACTGAAATCTTGATAGCTTAACTATCCGAAGTTCACTTAAATATGGCTTACCAAGATTCAGTTTGTTTTATGTGTTGATTGTCTTTCTTCAGTTAGTTGTCTGCACTCTACCACTTGTCTAAGTAAATATTAAAATGATTTGAAGTTATAAATGTTCTATTTTTTTGCTAATTTTCATGTCACTGATCTACTCTGCTTCTGTTCTTGGTAACGACATGCAGCATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCTTCAACAGAACGATAAATGGCTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCTCGCTCA</genome_strand>
        <mrna_strand>AGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCTTNCACAGAACGATAAATGGCTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCTCGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202705" ref_strand="+" ref_description="SGN-E202705 [cLEC-19-N12]">
      <seq>ttgccattgctgtctggttttctccatctgcagcttccatcgctggcaaagatattaatcctccatatcctaaagctatttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgaaggatgctcttgtgggtaggtcggtgtcttatgagtttgatgtggaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggttggttgaaaggcagacattggagaatcaggtgcctgttttggctccatttactttggcaggtcccatggagctgtggatccaggatgccaaggacatgagaatttcattacctcatgatgtggatgctggggagttgaggaaagtgattttagccgatggtgctgtcgttactgtcaagggtgccagatctgttagcctgcggcaccctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="136907" stop="139143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137207" g_stop="137289" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137644" g_stop="137979" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="419" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137980" i_stop="138745" i_length="766">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138746" g_stop="138843" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="517" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E202705" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137207" e_stop="137289"/>
          <exon e_start="137644" e_stop="137979"/>
          <exon e_start="138746" e_stop="138843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCTGTAAGTCATTCAACCTTTTTCTTTTCTTTATTAATCTTTATTTGTGATTGTTCTCTTACCTAATGACAGACAAGATTGCACCAGAAAATTAAGGCAAAAAATTGATTGTTTGGATCTTAGTGATTATGTTAACATCAATTAGGTGTCTAAAGTTTTTAATTATTAGAGATACATTATTGTTAGTCTGTTGTTGTGATTTGTTTTGGATTCGTTAGACTGATTGTGTTACGGTAACAATGCAATGAGGCAGAGTTTTACACGTGAGATTTGATTTAGGGTTTGTTTTTATGTGTTGTAGTTGGGATTGTGTTTGGAGTTTCTGATTGTTGGTTTTGTTTTCTGCTTGTTTTGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCTGTAAGTCTTTTGAAAGCTAGCTTTCTTATTTGATATATTCAGCAACAAAATTTGTTTTTTAATAGTAGTCCTCTATCGCAATGTTGAATGTTTTTCTCCTCTTTTTGGCTCTATATTTTGTTTTCTTATGAGTTCTAATACCTTAGGATGCATGGTATTCCTATATGTTTAGTTGCGAGAGACGCTCTTGTCGTGTTCCTTTTCTTTTTGGTGTTTCAAGAGAGTCTGCTATTGCTGTTAACCCAGAAAAGAGTCTTCTTTTGCTTATATAGTTATGGAAGGACCCCTGTTCAGACATGTGTGCTTCTCCGAGTTTTAAGCTGGAAAGCACTTCCTCAATGACAGTATAATCTTCCATTGGTTTCATGTGCAATGATGGCCTTTACTCTTATTGATAAGCATTGATCATGTTGTGTAGGACATTTGCTGCTGTAGGTTTTATTGGACTGAAAATAGGATTCCTGTCTTGTTGGTGGATTTTAGTTGAATTACTTTAGTACGTTAGATTGACGTTCTATATCTGTCCTGGGAAATAGAGTCACTCTACTGAAATCTTGATAGCTTAACTATCCGAAGTTCACTTAAATATGGCTTACCAAGATTCAGTTTGTTTTATGTGTTGATTGTCTTTCTTCAGTTAGTTGTCTGCACTCTACCACTTGTCTAAGTAAATATTAAAATGATTTGAAGTTATAAATGTTCTATTTTTTTGCTAATTTTCATGTCACTGATCTACTCTGCTTCTGTTCTTGGTAACGACATGCAGCATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTAT</genome_strand>
        <mrna_strand>TTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT..................................................................................................................................................................................................................................................................................................................................................................GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329911" ref_strand="+" ref_description="SGN-E329911 [cTOD-5-G21]">
      <seq>tttctgacttgaaggagtcaattgtaaagggtttaggttttcaagcggaggatttcaagatatctgggtttgatttgaaggatgctcttgtgggtaggtcggtgtcttatgagtttgatgtggaagttgataataaagtaattcccttaaagcttttggaggatgtgaataaatgggaatttgtagatttgcctatttttcgggtagagaaaggtgaagaaaatgggttggttgaaaggcagacattggagaatcaggtgcctgttttggctccatttactttggcaggtcccatggagctgtggatccaggatgccaaggacatgagaatttcattacctcatgatgtggatgctggggagttgaggaaagtgattttagccgatggtgctgtcgttactgtcaagggtgccagatctgttagcctgcggcaccctatagaacttccactgcccttcaacagaacgataaatggctttgcctctggtatgttggcattggctgaatatctacgtcaagcttctctcgctcaagagggacctctcctctctcttagaattgttggtcctacatctcttacatcccccacctcaccatctgccccttctgcaaacaaacttaagcttaaacggcttgcacctggtcttgttgagttgtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="137339" stop="139365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137639" g_stop="137979" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137980" i_stop="138745" i_length="766">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138746" g_stop="139065" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="661" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E329911" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137639" e_stop="137979"/>
          <exon e_start="138746" e_stop="139065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCTGTAAGTCTTTTGAAAGCTAGCTTTCTTATTTGATATATTCAGCAACAAAATTTGTTTTTTAATAGTAGTCCTCTATCGCAATGTTGAATGTTTTTCTCCTCTTTTTGGCTCTATATTTTGTTTTCTTATGAGTTCTAATACCTTAGGATGCATGGTATTCCTATATGTTTAGTTGCGAGAGACGCTCTTGTCGTGTTCCTTTTCTTTTTGGTGTTTCAAGAGAGTCTGCTATTGCTGTTAACCCAGAAAAGAGTCTTCTTTTGCTTATATAGTTATGGAAGGACCCCTGTTCAGACATGTGTGCTTCTCCGAGTTTTAAGCTGGAAAGCACTTCCTCAATGACAGTATAATCTTCCATTGGTTTCATGTGCAATGATGGCCTTTACTCTTATTGATAAGCATTGATCATGTTGTGTAGGACATTTGCTGCTGTAGGTTTTATTGGACTGAAAATAGGATTCCTGTCTTGTTGGTGGATTTTAGTTGAATTACTTTAGTACGTTAGATTGACGTTCTATATCTGTCCTGGGAAATAGAGTCACTCTACTGAAATCTTGATAGCTTAACTATCCGAAGTTCACTTAAATATGGCTTACCAAGATTCAGTTTGTTTTATGTGTTGATTGTCTTTCTTCAGTTAGTTGTCTGCACTCTACCACTTGTCTAAGTAAATATTAAAATGATTTGAAGTTATAAATGTTCTATTTTTTTGCTAATTTTCATGTCACTGATCTACTCTGCTTCTGTTCTTGGTAACGACATGCAGCATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCTTCAACAGAACGATAAATGGCTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCTCGCTCAAGAGGGACCTCTCCTCTCTCTTAGAATTGTTGGTCCTACATCTCTTACATCCCCCACCTCACCATCTGCCCCTTCTGCAAACAAACTTAAGCTTAAACGGCTTGCACCTGGTCTTGTTGAGTTGTCATC</genome_strand>
        <mrna_strand>TTTCTGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCTTCAACAGAACGATAAATGGCTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCTCGCTCAAGAGGGACCTCTCCTCTCTCTTAGAATTGTTGGTCCTACATCTCTTACATCCCCCACCTCACCATCTGCCCCTTCTGCAAACAAACTTAAGCTTAAACGGCTTGCACCTGGTCTTGTTGAGTTGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574746" ref_strand="+" ref_description="SGN-E574746 [34262]">
      <seq>tgttagcctatcgccaccctatagaacttccactgcctattcaacagaacgataaatgggtttgcctctggtatgttggcattggctgaatatctacgtcaagcttctctcgctcaagagggacctctcctctctcttcgaattgttggtcctacatctcttacatccccgcacctcaccatctgccccttctgcaaacaaacttaagcttaaacggcttgcacctggtcttgttgagttgtcatcagtatcaaaattgaaagccatggacgccatctccactattgatctccatggagaaaccactgcacttcttacacccaatcaattcactacattgtggcctgttacatctatcaatggttcaaactcgaacttgcttggttttgaggccttgctttctaatatactgggtcctaaagcaggtaaaaagggttctttcaagttgctgaaggcagatgtatcaggccaaacttttgtgaagattggttttggagttgagaagaagttgaaggaaggagatgggttcaatttggagggttatccagagtggagaactaaagctgaaacagtaaggatgcattttgaagttctggcaaaggtagatggtgacaaagttgtcccagagaaaattgtgcaggttgatccgataactatcgaggatacaggggcaccagtgtgcagtggggcatgtctccatgtcaagactccattggttcacaaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="138533" stop="139850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138823" g_stop="139550" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E574746" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138823" e_stop="139550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAGCCT-GCGGCACCCTATAGAACTTCCACTGCC-CTTCAACAGAACGATAAATGGCTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCTCGCTCAAGAGGGACCTCTCCTCTCTCTTAGAATTGTTGGTCCTACATCTCTTACATCCCC-CACCTCACCATCTGCCCCTTCTGCAAACAAACTTAAGCTTAAACGGCTTGCACCTGGTCTTGTTGAGTTGTCATCAGTATCAAAATTGAAAGCCATGGACGCCATCTCCACTATTGATCTCCAGGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAAGGTTCTTTCAAGTTGTTAAAGGCAGATGTATCAGCCCAGACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAGCCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTGCCAGAGAAAATTGTGCAGGTTGATCCGATAACTATCGAGGACACAGTGGCACCCAGTGTGCAGTTGGGCAATGTCTCCATGTCAAAGACTCCAATTGTTCACCAACCTC</genome_strand>
        <mrna_strand>TGTTAGCCTATCGCCACCCTATAGAACTTCCACTGCCTATTCAACAGAACGATAAATGGGTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCTCGCTCAAGAGGGACCTCTCCTCTCTCTTCGAATTGTTGGTCCTACATCTCTTACATCCCCGCACCTCACCATCTGCCCCTTCTGCAAACAAACTTAAGCTTAAACGGCTTGCACCTGGTCTTGTTGAGTTGTCATCAGTATCAAAATTGAAAGCCATGGACGCCATCTCCACTATTGATCTCCATGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAGGGTTCTTTCAAGTTGCTGAAGGCAGATGTATCAGGCCAAACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAAGCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTCCCAGAGAAAATTGTGCAGGTTGATCCGATAACTATCGAGGATACAGGGGCA-CCAGTGTGCAGTGGGGC-ATGTCTCCATGTC-AAGACTCCATTGGTTCACAAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576336" ref_strand="+" ref_description="SGN-E576336 [59539]">
      <seq>tgttagccttcgccaccctatagaacttccactgcctttcaacagaacgataaatgggtttgcctctggtatgttggcattggctgaatatctacgtcaagcttctctcgctcaagagggacctctcctctctcttcgaattgttggtcctacatctcttacatcccccacctcaccatctgccccttctgcaaacaaacttaagcttaaacggcttgcacctggtcttgttgagttgtcatcagtatcaaaattgaaagccatggacgccatctccactattgatctccatggagaaaccactgcacttcttacacccaatcaattcactacattgtggcctgttacatctatcaatggttcaaactcgaacttgcttggttttgaggccttgctttctaatatactgggtcctaaagcaggtaaaaagggttctttcaagttgctgaaggcagatgtatcagcccaaacttttgtgaagattggtttgggagttgagaagaagttgaaggaaggagatgggttcaatttggagggttatccagagtggagaactaaacctgaaacagtaaggatgcattttgaagttctggcaaaggtagatggtgacaaagttgtcccagagaacattgtgcaggttgatccgataactatcgaggatacaggggcacccagtgtgcagttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="138523" stop="139809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138823" g_stop="139509" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E576336" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138823" e_stop="139509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCTTCAACAGAACGATAAATGGCTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCTCGCTCAAGAGGGACCTCTCCTCTCTCTTAGAATTGTTGGTCCTACATCTCTTACATCCCCCACCTCACCATCTGCCCCTTCTGCAAACAAACTTAAGCTTAAACGGCTTGCACCTGGTCTTGTTGAGTTGTCATCAGTATCAAAATTGAAAGCCATGGACGCCATCTCCACTATTGATCTCCAGGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAAGGTTCTTTCAAGTTGTTAAAGGCAGATGTATCAGCCCAGACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAGCCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTGCCAGAGAAAATTGTGCAGGTTGATCCGATAACTATCGAGGACACAGTGGCACCCAGTGTGCAGTTGGG</genome_strand>
        <mrna_strand>TGTTAGCCTTCGCCACCCTATAGAACTTCCACTGCCTTTCAACAGAACGATAAATGGGTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCTCGCTCAAGAGGGACCTCTCCTCTCTCTTCGAATTGTTGGTCCTACATCTCTTACATCCCCCACCTCACCATCTGCCCCTTCTGCAAACAAACTTAAGCTTAAACGGCTTGCACCTGGTCTTGTTGAGTTGTCATCAGTATCAAAATTGAAAGCCATGGACGCCATCTCCACTATTGATCTCCATGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAGGGTTCTTTCAAGTTGCTGAAGGCAGATGTATCAGCCCAAACTTTTGTGAAGATTGGTTTGGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAACCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTCCCAGAGAACATTGTGCAGGTTGATCCGATAACTATCGAGGATACAGGGGCACCCAGTGTGCAGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575178" ref_strand="+" ref_description="SGN-E575178 [34761]">
      <seq>gcctttcaacagaacgataaatgggtttgcctctggtatgttggcattggctgaatatctacgtcaagcttctctcgctcaagagggacctctcctctctcttcgaattgttggtcctacatctcttacatcccccacctcaccatctgccccttctgcaaacaaacttaagcttaaacggcttgcacctggtcttgttgagttgtcatcagtatcaaaattgaaagccatggacgccatctccactattgatctccatggagaaaccactgcacttcttacacccaatcaattcactacattgtggcctgttacatctatcaatggttcaaactcgaacttgcttggttttgaggccttgctttctaatatactgggtcctaaagcaggtaaaaagggttctttcaagttgctgaaggcagatgtatcagcccaaacttttgtgaagattggttttggagttgagaagaagttgaaggaaggagatgggttcaatttggagggttatccagagtggagaactaaacctgaaacagtaaggatgcattttgaagttctggcaaaggtagatggtgacaaagttgtccccaagaaaattgtgcaggttgatccgataactatcgaggatacaggcgcaaccaagtgtgccagttgggcaatgtctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="138556" stop="139819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138856" g_stop="139519" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E575178" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138856" e_stop="139519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTTCAACAGAACGATAAATGGCTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCTCGCTCAAGAGGGACCTCTCCTCTCTCTTAGAATTGTTGGTCCTACATCTCTTACATCCCCCACCTCACCATCTGCCCCTTCTGCAAACAAACTTAAGCTTAAACGGCTTGCACCTGGTCTTGTTGAGTTGTCATCAGTATCAAAATTGAAAGCCATGGACGCCATCTCCACTATTGATCTCCAGGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAAGGTTCTTTCAAGTTGTTAAAGGCAGATGTATCAGCCCAGACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAGCCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTGCCAGAGAAAATTGTGCAGGTTGATCCGATAACTATCGAGGACACAGTGGC-ACCCAGTGTG-CAGTTGGGCAATGTCTCC</genome_strand>
        <mrna_strand>GCCTTTCAACAGAACGATAAATGGGTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCTCGCTCAAGAGGGACCTCTCCTCTCTCTTCGAATTGTTGGTCCTACATCTCTTACATCCCCCACCTCACCATCTGCCCCTTCTGCAAACAAACTTAAGCTTAAACGGCTTGCACCTGGTCTTGTTGAGTTGTCATCAGTATCAAAATTGAAAGCCATGGACGCCATCTCCACTATTGATCTCCATGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAGGGTTCTTTCAAGTTGCTGAAGGCAGATGTATCAGCCCAAACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAACCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTCCCCAAGAAAATTGTGCAGGTTGATCCGATAACTATCGAGGATACAGGCGCAACCAAGTGTGCCAGTTGGGCAATGTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209625" ref_strand="+" ref_description="SGN-E209625 [cLEC-54-M18]">
      <seq>cccttctgcaaacaaacttaagcttaaacggcttgcacctggtcttgttgagttgtcatcagtatcaaaattgaaagccatggacgccatctccactattgatctccagggagaaaccactgcacttcttacacccaatcaattcactacattgtggcctgttacatctatcaatggttcaaactcgaacttgcttggttttgaggccttgctttctaatatactgggtcctaaagcaggtaaaaaaggttctttcaagttgttaaaggcagatgtatcagcccagacttttgtgaagattggttttggagttgagaagaagttgaaggaaggagatgggttcaatttggagggttatccagagtggagaactaagcctgaaacagtaaggatgcattttgaagttctggcaaaggtagatggtgacaaagttgtgccagagaaaattgtgcaggttgatccgataactatcgaggacacagtggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="138706" stop="139792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139006" g_stop="139492" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E209625" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139006" e_stop="139492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTCTGCAAACAAACTTAAGCTTAAACGGCTTGCACCTGGTCTTGTTGAGTTGTCATCAGTATCAAAATTGAAAGCCATGGACGCCATCTCCACTATTGATCTCCAGGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAAGGTTCTTTCAAGTTGTTAAAGGCAGATGTATCAGCCCAGACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAGCCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTGCCAGAGAAAATTGTGCAGGTTGATCCGATAACTATCGAGGACACAGTGGCA</genome_strand>
        <mrna_strand>CCCTTCTGCAAACAAACTTAAGCTTAAACGGCTTGCACCTGGTCTTGTTGAGTTGTCATCAGTATCAAAATTGAAAGCCATGGACGCCATCTCCACTATTGATCTCCAGGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAAGGTTCTTTCAAGTTGTTAAAGGCAGATGTATCAGCCCAGACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAGCCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTGCCAGAGAAAATTGTGCAGGTTGATCCGATAACTATCGAGGACACAGTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200038" ref_strand="+" ref_description="SGN-E200038 [cLEC-8-C14]">
      <seq>cccttctgcaaacaaacttaagcttaaacggcttgcacctggtcttgttgagttgtcatcagtatcaaaattgaaagccatggacgccatctccactattgatctccagggagaaaccactgcacttcttacacccaatcaattcactacattgtggcctgttacatctatcaatggttcaaactcgaacttgcttggttttgaggccttgctttctaatatactgggtcctaaagcaggtaaaaaaggttctttcaagttgttaaaggcagatgtatcagcccagacttttgtgaagattggttttggagttgagaagaagttgaaggaaggagatgggttcaatttggagggttatccagagtggagaactaagcctgaaacagtaaggatgcattttgaagttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="138706" stop="139715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139006" g_stop="139415" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E200038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139006" e_stop="139415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTCTGCAAACAAACTTAAGCTTAAACGGCTTGCACCTGGTCTTGTTGAGTTGTCATCAGTATCAAAATTGAAAGCCATGGACGCCATCTCCACTATTGATCTCCAGGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAAGGTTCTTTCAAGTTGTTAAAGGCAGATGTATCAGCCCAGACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAGCCTGAAACAGTAAGGATGCATTTTGAAGTTCTGG</genome_strand>
        <mrna_strand>CCCTTCTGCAAACAAACTTAAGCTTAAACGGCTTGCACCTGGTCTTGTTGAGTTGTCATCAGTATCAAAATTGAAAGCCATGGACGCCATCTCCACTATTGATCTCCAGGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAAGGTTCTTTCAAGTTGTTAAAGGCAGATGTATCAGCCCAGACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAGCCTGAAACAGTAAGGATGCATTTTGAAGTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554306" ref_strand="+" ref_description="SGN-E554306 [cTSC-3-N9]">
      <seq>ttttttttttttttaataccaaaaagatctggcatatattcctgatacttctttgatgaattcgtaaagttaggtctcttcgtacctgatgtatgtaatagctataaaaacagaggacaaaagaagagggcaattttatctatacagttttgctcaagcacaaatcttgcccgtctaaagagtgagtttataaggtgaatggatttggaggttggtgaacaattggagtctttgacatggagacattgcccaactgcacactgggtgccactgtgtcctcgatagttatcggatcaacctgcacaattttctctggcacaactttgtcaccatctacctttgccaaaacttcaaaatgcatccttactgtttcaggcttagttctccactctggataaccctccaaattgaacccatctccttccttcaacttcttctcaactccaaaaccaatcttcacaaaagtctgggctgatacatctgcctttaacaacttgaaagaaccttttttacctgctttaggacccagtatattaaaaagcaaggcctcaaaaccaagcaagttcgagtttgaaccattgatagatgtaacaggccacaatgtagtgaattgattgggtgtaaaaagtgcagtggtttctccctggagatcaatagtggagatggcgtccatggctttcaattttgatactgatgacaactcaacaagaccaggtgcaagccgtttaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="140048" stop="138726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139748" g_stop="139026" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="732" r_length="723" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E554306" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139748" e_stop="139026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAATACCAAAAAGATCTGGCATATATTCCTGATACTTCTTTGATGAATTCGTAGAGTTAGGTCTCTTCGTACCTGATGTATGTAATAGCTATAAAAACAGAGGACAAAAGAAGAGGGCAATTTTATCTATACAGTTTTGCTCAAGCACAAATCTTGCCCGTCTAAAGAGTGAGTTTATAAGGTGAATGGATTTGGAGGTTGGTGAACAATTGGAGTCTTTGACATGGAGACATTGCCCAACTGCACACTGGGTGCCACTGTGTCCTCGATAGTTATCGGATCAACCTGCACAATTTTCTCTGGCACAACTTTGTCACCATCTACCTTTGCCAGAACTTCAAAATGCATCCTTACTGTTTCAGGCTTAGTTCTCCACTCTGGATAACCCTCCAAATTGAACCCATCTCCTTCCTTCAACTTCTTCTCAACTCCAAAACCAATCTTCACAAAAGTCTGGGCTGATACATCTGCCTTTAACAACTTGAAAGAACCTTTTTTACCTGCTTTAGGACCCAGTATATTAGAAAGCAAGGCCTCAAAACCAAGCAAGTTCGAGTTTGAACCATTGATAGATGTAACAGGCCACAATGTAGTGAATTGATTGGGTGTAAGAAGTGCAGTGGTTTCTCCCTGGAGATCAATAGTGGAGATGGCGTCCATGGCTTTCAATTTTGATACTGATGACAACTCAACAAGACCAGGTGCAAGCCGTTTAAGCT</genome_strand>
        <mrna_strand>TTTTTAATACCAAAAAGATCTGGCATATATTCCTGATACTTCTTTGATGAATTCGTAAAGTTAGGTCTCTTCGTACCTGATGTATGTAATAGCTATAAAAACAGAGGACAAAAGAAGAGGGCAATTTTATCTATACAGTTTTGCTCAAGCACAAATCTTGCCCGTCTAAAGAGTGAGTTTATAAGGTGAATGGATTTGGAGGTTGGTGAACAATTGGAGTCTTTGACATGGAGACATTGCCCAACTGCACACTGGGTGCCACTGTGTCCTCGATAGTTATCGGATCAACCTGCACAATTTTCTCTGGCACAACTTTGTCACCATCTACCTTTGCCAAAACTTCAAAATGCATCCTTACTGTTTCAGGCTTAGTTCTCCACTCTGGATAACCCTCCAAATTGAACCCATCTCCTTCCTTCAACTTCTTCTCAACTCCAAAACCAATCTTCACAAAAGTCTGGGCTGATACATCTGCCTTTAACAACTTGAAAGAACCTTTTTTACCTGCTTTAGGACCCAGTATATTAAAAAGCAAGGCCTCAAAACCAAGCAAGTTCGAGTTTGAACCATTGATAGATGTAACAGGCCACAATGTAGTGAATTGATTGGGTGTAAAAAGTGCAGTGGTTTCTCCCTGGAGATCAATAGTGGAGATGGCGTCCATGGCTTTCAATTTTGATACTGATGACAACTCAACAAGACCAGGTGCAAGCCGTTTAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552379" ref_strand="+" ref_description="SGN-E552379 [cTSB-3-L23]">
      <seq>gttgtcatcagtatcaaaattgaaagccatggacgccatctccactattgatctccagggagaaaccactgcacttcttacacccaatcaattcactacattgtggcctgttacatctatcaatggttcaaactcgaacttgcttggttttgaggccttgctttctaatatactgggtcctaaagcaggtaaaaaaggttctttcaagttgttaaaggcagatgtatcagcccagacttttgtgaagattggttttggagttgagaagaagttgaaggaaggagatgggttcaatttggagggttatccagagtggagaactaagcctgaaacagtaaggatgcattttgaagttctggcaaaggtagatggtgacaaagttgtgccagagaaaattgtgcaggttgatccgataactatcgaggacacagtggcacccagtgtgcagttgggcaatgtctccatgtcaaagactccaattgttcaccaacctccaaatccattcaccttataaactcactctttagacgggcaagatttgtgcttgagcaaaactgtatagataaaattgccctcttcttttgtcctctgtttttatagctattacatacatcaggtacgaagagacctaactctacgaattcatcaaagaagtatcaggaatatatgccagatctttttggtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="138757" stop="140041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139057" g_stop="139738" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="698"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E552379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139057" e_stop="139738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTCATCAGTATCAAAATTGAAAGCCATGGACGCCATCTCCACTATTGATCTCCAGGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAAGGTTCTTTCAAGTTGTTAAAGGCAGATGTATCAGCCCAGACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAGCCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTGCCAGAGAAAATTGTGCAGGTTGATCCGATAACTATCGAGGACACAGTGGCACCCAGTGTGCAGTTGGGCAATGTCTCCATGTCAAAGACTCCAATTGTTCACCAACCTCCAAATCCATTCACCTTATAAACTCACTCTTTAGACGGGCAAGATTTGTGCTTGAGCAAAACTGTATAGATAAAATTGCCCTCTTCTTTTGTCCTCTGTTTTTATAGCTATTACATACATCAGGTACGAAGAGACCTAACTCTACGAATTCATCAAAGAAGTATCAGGAATATATGCCAGATCTTTTTG</genome_strand>
        <mrna_strand>GTTGTCATCAGTATCAAAATTGAAAGCCATGGACGCCATCTCCACTATTGATCTCCAGGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAAGGTTCTTTCAAGTTGTTAAAGGCAGATGTATCAGCCCAGACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAGCCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTGCCAGAGAAAATTGTGCAGGTTGATCCGATAACTATCGAGGACACAGTGGCACCCAGTGTGCAGTTGGGCAATGTCTCCATGTCAAAGACTCCAATTGTTCACCAACCTCCAAATCCATTCACCTTATAAACTCACTCTTTAGACGGGCAAGATTTGTGCTTGAGCAAAACTGTATAGATAAAATTGCCCTCTTCTTTTGTCCTCTGTTTTTATAGCTATTACATACATCAGGTACGAAGAGACCTAACTCTACGAATTCATCAAAGAAGTATCAGGAATATATGCCAGATCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618901" ref_strand="+" ref_description="SGN-E618901 [69584]">
      <seq>acgccatctccactattgatctccatggagaaaccactgcacttcttacacccaatcaattcactacattgtggcctgttacatctatcaatggttcaaactcgaacttgcttggttttgaggccttgctttctaatatactgggtcctaaagcaggtaaaaagggttctttcaagttgctgaaggcagatgtatcagcccaaacttttgtgaagattggttttggagttgagaagaagttgaaggaaggagatgggttcaatttggagggttatccagagtggagaactaaacctgaaacagtaaggatgcattttgaagttctggcaaaggtagatggtgacaaagttgtcccagagaaaattgtgcaggttgatccgataactatcgaggatacaggggcacccagtgtgcagttgggcaatgtctccatgtcaaagactccaattgttcaccaacctccaaatccattaaccttataaactccttagacgggcaagatttgtgtttgagcaaaactgtatagatcaaattgccctcttcttttgtcctctgtttctatagctattacatacatcaggtacgaagggacctgactatctaagaattcatcaaagaagtatcaggaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="138789" stop="140023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139089" g_stop="139723" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E618901" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139089" e_stop="139723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCATCTCCACTATTGATCTCCAGGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAAGGTTCTTTCAAGTTGTTAAAGGCAGATGTATCAGCCCAGACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAGCCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTGCCAGAGAAAATTGTGCAGGTTGATCCGATAACTATCGAGGACACAGTGGCACCCAGTGTGCAGTTGGGCAATGTCTCCATGTCAAAGACTCCAATTGTTCACCAACCTCCAAATCCATTCACCTTATAAACTCACTCTTTAGACGGGCAAGATTTGTGCTTGAGCAAAACTGTATAGATAAAATTGCCCTCTTCTTTTGTCCTCTGTTTTTATAGCTATTACATACATCAGGTACGAAGAGACCTAAC--TCTACGAATTCATCAAAGAAGTATCAGGAATATA</genome_strand>
        <mrna_strand>ACGCCATCTCCACTATTGATCTCCATGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAGGGTTCTTTCAAGTTGCTGAAGGCAGATGTATCAGCCCAAACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAACCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTCCCAGAGAAAATTGTGCAGGTTGATCCGATAACTATCGAGGATACAGGGGCACCCAGTGTGCAGTTGGGCAATGTCTCCATGTCAAAGACTCCAATTGTTCACCAACCTCCAAATCCATTAACCTTATAAACT--C-C-TTAGACGGGCAAGATTTGTGTTTGAGCAAAACTGTATAGATCAAATTGCCCTCTTCTTTTGTCCTCTGTTTCTATAGCTATTACATACATCAGGTACGAAGGGACCTGACTATCTAAGAATTCATCAAAGAAGTATCAGGAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319488" ref_strand="+" ref_description="SGN-E319488 [cTOB-15-G21]">
      <seq>tttttgaataccaaaaagatctggcatatattcctgatacttctttgatgaattcgtagagttaggtctcttcgtacctgatgtatgtaatagctataaaaacagaggacaaaagaagagggcaattttatctatacagttttgctcaagcacaaatcttgcccgtctaaagagtgagtttataaggtgaatggatttggaggttggtgaacaattggagtctttgacatggagacattgcccaactgcacactgggtgccactgtgtcctcgatagttatcggatcaacctgcacaattttctctggcacaactttgtcaccatctacctttgccagaacttcaaaatgcatccttactgtttcaggcttagttctccactctggataaccctccaaattgaacccatctccttccttcaacttcttctcaactccaaaaccaatcttcacaaaagtctgggctgatacatctgcctttaacaacttgaaagaaccttttttacctgctttaggacccagtatattagaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="140048" stop="138915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139749" g_stop="139215" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E319488" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139749" e_stop="139215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTGAATACCAAAAAGATCTGGCATATATTCCTGATACTTCTTTGATGAATTCGTAGAGTTAGGTCTCTTCGTACCTGATGTATGTAATAGCTATAAAAACAGAGGACAAAAGAAGAGGGCAATTTTATCTATACAGTTTTGCTCAAGCACAAATCTTGCCCGTCTAAAGAGTGAGTTTATAAGGTGAATGGATTTGGAGGTTGGTGAACAATTGGAGTCTTTGACATGGAGACATTGCCCAACTGCACACTGGGTGCCACTGTGTCCTCGATAGTTATCGGATCAACCTGCACAATTTTCTCTGGCACAACTTTGTCACCATCTACCTTTGCCAGAACTTCAAAATGCATCCTTACTGTTTCAGGCTTAGTTCTCCACTCTGGATAACCCTCCAAATTGAACCCATCTCCTTCCTTCAACTTCTTCTCAACTCCAAAACCAATCTTCACAAAAGTCTGGGCTGATACATCTGCCTTTAACAACTTGAAAGAACCTTTTTTACCTGCTTTAGGACCCAGTATATTAGAAAGCA</genome_strand>
        <mrna_strand>TTTTTGAATACCAAAAAGATCTGGCATATATTCCTGATACTTCTTTGATGAATTCGTAGAGTTAGGTCTCTTCGTACCTGATGTATGTAATAGCTATAAAAACAGAGGACAAAAGAAGAGGGCAATTTTATCTATACAGTTTTGCTCAAGCACAAATCTTGCCCGTCTAAAGAGTGAGTTTATAAGGTGAATGGATTTGGAGGTTGGTGAACAATTGGAGTCTTTGACATGGAGACATTGCCCAACTGCACACTGGGTGCCACTGTGTCCTCGATAGTTATCGGATCAACCTGCACAATTTTCTCTGGCACAACTTTGTCACCATCTACCTTTGCCAGAACTTCAAAATGCATCCTTACTGTTTCAGGCTTAGTTCTCCACTCTGGATAACCCTCCAAATTGAACCCATCTCCTTCCTTCAACTTCTTCTCAACTCCAAAACCAATCTTCACAAAAGTCTGGGCTGATACATCTGCCTTTAACAACTTGAAAGAACCTTTTTTACCTGCTTTAGGACCCAGTATATTAGAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228915" ref_strand="+" ref_description="SGN-E228915 [cLEL-29-P11](-)">
      <seq>gtaaaaaaggttctttcaagttgttaaaggcagatgtatcagcccagacttttgtgaagattggttttggagttgagaagaagttgaaggaaggagatgggttcaatttggagggttatccagagtggagaactaagcctgaaacagtaaggatgcattttgaagttctggcaaaggtagatggtgacaaagttgtgccagagaaaattgtgcaggttgatccgataactatcgaggacacagtggcacccagtgtgcagttgggcaatgtctccatgtcaaagactccaattgttcaccaacctccaaatccattcaccttataaactcactctttagacgggcaagatttgtgcttgagcaaaactgtatagataaaattgccctcttcttttgtcctctgtttttatagctattacatacatcaggtacgaagagacctaactctacgaattcatcaaagaagtatcaggaatatatgccagatctttttggtacccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="138945" stop="140048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139245" g_stop="139738" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="516"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E228915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139245" e_stop="139738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAAAGGTTCTTTCAAGTTGTTAAAGGCAGATGTATCAGCCCAGACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAGCCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTGCCAGAGAAAATTGTGCAGGTTGATCCGATAACTATCGAGGACACAGTGGCACCCAGTGTGCAGTTGGGCAATGTCTCCATGTCAAAGACTCCAATTGTTCACCAACCTCCAAATCCATTCACCTTATAAACTCACTCTTTAGACGGGCAAGATTTGTGCTTGAGCAAAACTGTATAGATAAAATTGCCCTCTTCTTTTGTCCTCTGTTTTTATAGCTATTACATACATCAGGTACGAAGAGACCTAACTCTACGAATTCATCAAAGAAGTATCAGGAATATATGCCAGATCTTTTTG</genome_strand>
        <mrna_strand>GTAAAAAAGGTTCTTTCAAGTTGTTAAAGGCAGATGTATCAGCCCAGACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAGCCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTGCCAGAGAAAATTGTGCAGGTTGATCCGATAACTATCGAGGACACAGTGGCACCCAGTGTGCAGTTGGGCAATGTCTCCATGTCAAAGACTCCAATTGTTCACCAACCTCCAAATCCATTCACCTTATAAACTCACTCTTTAGACGGGCAAGATTTGTGCTTGAGCAAAACTGTATAGATAAAATTGCCCTCTTCTTTTGTCCTCTGTTTTTATAGCTATTACATACATCAGGTACGAAGAGACCTAACTCTACGAATTCATCAAAGAAGTATCAGGAATATATGCCAGATCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229011" ref_strand="+" ref_description="SGN-E229011 [cLEL-29-P11](-)">
      <seq>aattgtgcaggttgatccaataactatcagggacacagtggcacccagtgtgcagttgggcaatgtctccatgtcaaagactccaattgttcaccaacctccaaatccattcaccttataaactcactctttagacgggcaagatttgtgcttgagcaaaactgtatagataaaattgccctcttcgtttgtcctctgtttttatagctattacatacatcaggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="139150" stop="139975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139450" g_stop="139675" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E229011" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139450" e_stop="139675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTGCAGGTTGATCCGATAACTATCGAGGACACAGTGGCACCCAGTGTGCAGTTGGGCAATGTCTCCATGTCAAAGACTCCAATTGTTCACCAACCTCCAAATCCATTCACCTTATAAACTCACTCTTTAGACGGGCAAGATTTGTGCTTGAGCAAAACTGTATAGATAAAATTGCCCTCTTCTTTTGTCCTCTGTTTTTATAGCTATTACATACATCAGGTA</genome_strand>
        <mrna_strand>AATTGTGCAGGTTGATCCAATAACTATCAGGGACACAGTGGCACCCAGTGTGCAGTTGGGCAATGTCTCCATGTCAAAGACTCCAATTGTTCACCAACCTCCAAATCCATTCACCTTATAAACTCACTCTTTAGACGGGCAAGATTTGTGCTTGAGCAAAACTGTATAGATAAAATTGCCCTCTTCGTTTGTCCTCTGTTTTTATAGCTATTACATACATCAGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203107" ref_strand="+" ref_description="SGN-E203107 [cLEB-3-L13](-)">
      <seq>aaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaataccttttctgattgtctggtaaatattataaatgaaatgtttgtctgttaagtacaatgcttttaataaagagcatctacatttcgtctgtgcaacgaatattattcaaatataagcttcatgtgctttgctagttttggtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="140926" stop="139535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140626" g_stop="140595" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="122" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="217" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140090" g_stop="139831" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="477" r_length="260" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E203107" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140626" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTAGTTTTGGTAAAAGAAAAAAAGAACCAATTCT</genome_strand>
        <mrna_strand>AAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTAGTTTTGGTAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407541" ref_strand="+" ref_description="SGN-E407541 [PPI-7-N17]">
      <seq>tgaagaagtctatcaacttggtcccctaaacgagtatgagaggattggacttgagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagtattgagtttcaaattcagtagtactttttctgattgtctggtaaatattataaatgaaatggttgtctgtcaagtactatgctaataaagagtatctacattctgtctgtgaaacgaatattattcaaatataagcttcatgtgctttgctagttttggtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="140508" stop="139535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140208" g_stop="140167" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140090" g_stop="139831" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="299" r_length="257" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E407541" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140208" e_stop="140167"/>
          <exon e_start="140090" e_stop="139831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTAGTTTTGGTAAAAGAAAAAAAGAACCAATTCT</genome_strand>
        <mrna_strand>TGAAGAAGTCTATCAACTTGGTCCCCTAAACGAGTATGAGAG............................................................................GATTGGACTTGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGTATTGAGTTTCAAATTCAGTAGTACTTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGGTTGTCTGTCAAGTACTATGC---TAATAAAGAGTATCTACATTCTGTCTGTGAAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTAGTTTTGGTAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421257" ref_strand="+" ref_description="SGN-E421257 [STM-32-H3]">
      <seq>tgaagaagtctatcaacttggtcccctaaacgagtatgagaggattggacttgagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagtattgagtttcaaattcagtagtactttttctgattgtctggtaaatattataaatgaaatggttgtctgtcaagtactatgctaataaagagtatctacattctgtctgtgaaacgaatattattcaaatataagcttcatgtgctttgctagttttggtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="140508" stop="139535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140208" g_stop="140167" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140090" g_stop="139831" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="299" r_length="257" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E421257" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140208" e_stop="140167"/>
          <exon e_start="140090" e_stop="139831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTAGTTTTGGTAAAAGAAAAAAAGAACCAATTCT</genome_strand>
        <mrna_strand>TGAAGAAGTCTATCAACTTGGTCCCCTAAACGAGTATGAGAG............................................................................GATTGGACTTGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGTATTGAGTTTCAAATTCAGTAGTACTTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGGTTGTCTGTCAAGTACTATGC---TAATAAAGAGTATCTACATTCTGTCTGTGAAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTAGTTTTGGTAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619372" ref_strand="+" ref_description="SGN-E619372 [70061]">
      <seq>cagaactccctttctttgcctctaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaacgagtatgagaggattggacttgagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagtattgagtttcaaattcagtagtactttttctgattgtctggtaaatattataaatgaaatggttgtctgtcaagtactatgctaataaagagtatctacattctgtctgtgaaacgaatattattcaaatataagcttcatgtgctttgctagttttggtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="140557" stop="139535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140257" g_stop="140167" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140090" g_stop="139834" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="345" r_length="254" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E619372" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140257" e_stop="140167"/>
          <exon e_start="140090" e_stop="139834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTAGTTTTGGTAAAAGAAAAAAAGAACCAAT</genome_strand>
        <mrna_strand>CAGAACTCCCTTTCTTTGCCTCTAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAACGAGTATGAGAG............................................................................GATTGGACTTGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGTATTGAGTTTCAAATTCAGTAGTACTTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGGTTGTCTGTCAAGTACTATGC---TAATAAAGAGTATCTACATTCTGTCTGTGAAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTAGTTTTGGTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613544" ref_strand="+" ref_description="SGN-E613544 [63320]">
      <seq>gaactagtggatcccccggcgnctgcaggtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaacgagtatgagaggattggacttgagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagtattgagtttcaaattcagtagtactttttctgattgtctggtaaatattataaatgaaatggttgtctgtcaagtactatgctaataaagagtatctacattctgtatgtgaaacgaatattattcaaatataagcttcatgtgctttgctagttttggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="140540" stop="139542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140230" g_stop="140167" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="93" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140090" g_stop="139843" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="338" r_length="245" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E613544" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140230" e_stop="140167"/>
          <exon e_start="140090" e_stop="139843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTAGTTTTGGTAAAAGAAAAAA</genome_strand>
        <mrna_strand>TACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAACGAGTATGAGAG............................................................................GATTGGACTTGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGTATTGAGTTTCAAATTCAGTAGTACTTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGGTTGTCTGTCAAGTACTATGC---TAATAAAGAGTATCTACATTCTGTATGTGAAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTAGTTTTGGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219300" ref_strand="+" ref_description="SGN-E219300 [cLEL-11-G17](-)">
      <seq>atatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaataccttttctgattgtctggtaaatattataaatgaaatgtttgtctgttaagtacaatgcttttaataaagagcatctacatttcgtctgtgcaacgaatattattcaaatataagcttcatgtgctttgctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="140798" stop="139562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140498" g_stop="140411" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="184" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140090" g_stop="139845" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="430" r_length="246" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E219300" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140498" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAG-AACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTAGTTTTGGTAAAAGAAAA</genome_strand>
        <mrna_strand>ATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611623" ref_strand="-" ref_description="SGN-E611623 [61376]">
      <seq>ccctagggaagtagaggttcctgtggttggaggtcatgctggggtgacaattttgccgcttctctcacaggtcaagcctccttgctccttcacacatgaggaaacagaatacttgaccaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgcctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctctaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaacgagtatgagaggattggacttgagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagtattgagtttcaaattcagtagtactttttctgattgtctggtaaatattataaatgaaatggttgtctgtcaagtactatgctaataaagagtatctacattctgtatgtgaaacgaatattattcaaatataagcttcatgtgctttgctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="141304" stop="139562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141005" g_stop="140936" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="154" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="190" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="280" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="375" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140090" g_stop="139862" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="601" r_length="226" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="602" polyA_stop="612"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E611623" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611623" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="141005" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTA</genome_strand>
        <mrna_strand>CCCTAGGGAAGTAGAGGTTCCTGTGGTTGGAGGTCATGCTGGGGTGACAATTTTGCCGCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACATGAGGAAACAGAATACTTGACCAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGCCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCTAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAACGAGTATGAGAG............................................................................GATTGGACTTGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGTATTGAGTTTCAAATTCAGTAGTACTTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGGTTGTCTGTCAAGTACTATGC---TAATAAAGAGTATCTACATTCTGTATGTGAAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746507" ref_strand="+" ref_description="SGN-E746507 [GI|47104243]">
      <seq>ttgagataatatcattacttgtattacatcctaattaggaacacaaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaattgccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggatactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggtacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtagttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcaccgaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgaaagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaatactttttctgattgtctggtaaatattataaatgaaatggttgtctgtcaagtacaatgcttttaataaagagcatctacatttcgtctgcgaaacgaatattattcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142842" stop="139580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142538" g_stop="142411" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="150" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="366" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="681" r_length="315" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="771" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="855" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="891" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="892" r_stop="981" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="982" r_stop="1076" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="140090" g_stop="139873" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1077" r_stop="1294" r_length="218" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E746507" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1272</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142538" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACATCCTAATTAGAAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAAGCTTCAT</genome_strand>
        <mrna_strand>ATTACATCCTAATTAGGAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATTGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGATACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGTACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTAGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACCGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAAAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACTTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGGTTGTCTGTCAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGCGAAACGAATATTATTCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732732" ref_strand="+" ref_description="SGN-E732732 [LB02DH09]">
      <seq>gtcttgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaataccttttctgattgtctggtaaatattataaatgaaatgtttgtctgttaagtacaatgcttttaataaagagcatctacatttcgtctgtgcaacgaatattattcaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="141273" stop="139580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140973" g_stop="140936" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="122" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="158" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="248" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="343" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140090" g_stop="139880" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="554" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E732732" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140973" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAA</genome_strand>
        <mrna_strand>GTCTTGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277508" ref_strand="-" ref_description="SGN-E277508 [cLER-3-F19]">
      <seq>acacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaataccttttctgattgtctggtaaatattataaatgaaatgtttgtctgttaagtacaatgcttttaataaagagcatctacatttcgtctgtgcaacgaatattattcaaataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="141113" stop="139580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140813" g_stop="140751" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="99" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="189" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="284" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140090" g_stop="139880" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="495" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E277508" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277508" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="140813" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAA</genome_strand>
        <mrna_strand>ACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268082" ref_strand="-" ref_description="SGN-E268082 [cLEI-15-L20]">
      <seq>aaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaataccttttctgattgtctggtaaatattataaatgaaatgtttgtctgttaagtacaatgcttttaataaagagcatctacatttcgtctgtgcaacgaatattattcaaatataaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="140927" stop="139580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140627" g_stop="140595" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="123" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="218" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140090" g_stop="139880" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="429" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="430" polyA_stop="447"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E268082" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268082" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="140627" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAA</genome_strand>
        <mrna_strand>AAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220351" ref_strand="+" ref_description="SGN-E220351 [cLEL-12-K19](-)">
      <seq>caagatggaggaacaaaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaataccttttctgattgtctggtaaatattataaatgaaatgtttgtctgttaagtacaatgcttttaataaagagcatctacatttcgtctgtgcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="140936" stop="139594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140777" g_stop="140751" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="63" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="153" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="248" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140090" g_stop="139883" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="456" r_length="208" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E220351" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140777" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATA</genome_strand>
        <mrna_strand>CAAGATGGAGGAACAAAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220708" ref_strand="+" ref_description="SGN-E220708 [cLEL-12-K19](-)">
      <seq>tccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaataccttttctgattgtctggtaaatattataaatgaaatgtttgtctgttaagtacaatgcttttaataaagagcatctacatttcgtctgtgcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="140551" stop="139594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140251" g_stop="140167" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140090" g_stop="139883" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="293" r_length="208" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E220708" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140251" e_stop="140167"/>
          <exon e_start="140090" e_stop="139883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATA</genome_strand>
        <mrna_strand>TCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344969" ref_strand="+" ref_description="SGN-E344969 [cTOF-22-I22]">
      <seq>tcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaataccttttctgattgtctggtaaatattataaatgaaatgtttgtctgttaagtacaatgcttttaataaagagcatctnacatttcgtctgtgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="141318" stop="139594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141018" g_stop="140936" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="167" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="203" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="293" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="388" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140090" g_stop="139887" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="593" r_length="205" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E344969" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141018" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCT-ACATTTCGTCTGTGCAACGAATATTATTCA</genome_strand>
        <mrna_strand>TCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTNACATTTCGTCTGTGCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277471" ref_strand="+" ref_description="SGN-E277471 [cLER-3-E14]">
      <seq>aactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaataccttttctgattgtctggtaaatattataaatgaaatgtttgtctgttaagtacaatgcttttaataaagagcatctacatttcgtctgtgcaacgaatattattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="140809" stop="139587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140607" g_stop="140595" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="103" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="198" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140090" g_stop="139887" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="402" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E277471" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140607" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCA</genome_strand>
        <mrna_strand>AACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295955" ref_strand="-" ref_description="SGN-E295955 [cLET-27-E19]">
      <seq>agatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaatactttttctgattgtctggtaaatattataaatgaaatgtttgtctgttaagtacaatgcttttaataaagagcatctacatttcgtctgtgcaaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="141308" stop="139594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141008" g_stop="140936" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="157" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="193" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="283" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="378" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140090" g_stop="139900" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="569" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="570" polyA_stop="588"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E295955" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295955" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="141008" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAA</genome_strand>
        <mrna_strand>AGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACTTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733393" ref_strand="+" ref_description="SGN-E733393 [LB04DC01]">
      <seq>caatagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaataccttttctgattgtctggtaaatattataaatgaaatgtttgtctgttaagtacaatgcttttaataaagagcatctacatttcgtctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="141821" stop="139603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141521" g_stop="141304" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="308" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="392" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="428" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="518" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="613" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140090" g_stop="139903" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="801" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E733393" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141521" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTG</genome_strand>
        <mrna_strand>CAATAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615141" ref_strand="+" ref_description="SGN-E615141 [64936]">
      <seq>aagtagaggttcctgtggttggaggtcatgctggggtgacaattttgccgcttctctcacaggtcaagcctccttgctccttcacacatgaggaaacagaatacttgaccaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgcctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctctaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaacgagtatgagaggattggacttgagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagtattgagtttcaaattcagtagtactttttctgattgtctggtaaatattataaatgaaatggttgtctgtcaagtactatgctaataaagagtatctacattctgtatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="141297" stop="139611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140997" g_stop="140936" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="146" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="182" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="272" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="367" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140090" g_stop="139903" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="552" r_length="185" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E615141" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140997" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTG</genome_strand>
        <mrna_strand>AAGTAGAGGTTCCTGTGGTTGGAGGTCATGCTGGGGTGACAATTTTGCCGCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACATGAGGAAACAGAATACTTGACCAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGCCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCTAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAACGAGTATGAGAG............................................................................GATTGGACTTGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGTATTGAGTTTCAAATTCAGTAGTACTTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGGTTGTCTGTCAAGTACTATGC---TAATAAAGAGTATCTACATTCTGTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285950" ref_strand="+" ref_description="SGN-E285950 [cLES-13-O10]">
      <seq>cacagacgaaatgtagatgctctttattaaaagcattgtacttaacagacaaacatttcatttataatatttaccagacaatcagaaaaggtattactgaatttgaaactcaattctaattcctgatgaaggaaattcctttctgaatgctctcagcaagctctttcttggccttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="139603" stop="140381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139903" g_stop="140081" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E285950" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139903" e_stop="140081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGACGAAATGTAGATGCTCTTTATTAAAAGCATTGTACTTAACAGACAAACATTTCATTTATAATATTTACCAGACAATCAGAAAAGGTATTACTGAATTTGAAACTCAATTCTAATTCCTGATGAAGGAAATTCCTTTCTGAATGCTCTCAGCAAGCTCTTTCTTGGCCTTCTCC</genome_strand>
        <mrna_strand>CACAGACGAAATGTAGATGCTCTTTATTAAAAGCATTGTACTTAACAGACAAACATTTCATTTATAATATTTACCAGACAATCAGAAAAGGTATTACTGAATTTGAAACTCAATTCTAATTCCTGATGAAGGAAATTCCTTTCTGAATGCTCTCAGCAAGCTCTTTCTTGGCCTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203278" ref_strand="+" ref_description="SGN-E203278 [cLEB-3-B9](-)">
      <seq>cattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaataccttttctgattgtctggtaaatattataaatgaaatgtttgtctgttaagtacaatgcttttaataaagagcatctacatttcgtctgtgaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="141081" stop="139594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140781" g_stop="140751" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="67" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="157" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="252" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140090" g_stop="139904" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="439" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="466"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E203278" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140781" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGT</genome_strand>
        <mrna_strand>CATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733278" ref_strand="+" ref_description="SGN-E733278 [LB04BG10]">
      <seq>cgtgtggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaataccttttctgattgtctggtaaatattataaatgaaatgtttgtctgttaagtacaatgcttttaataaagagcatctacatttcgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="141786" stop="139605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141487" g_stop="141304" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="274" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="358" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="394" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="484" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="579" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140090" g_stop="139905" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="765" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E733278" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141487" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTG</genome_strand>
        <mrna_strand>CGTGTGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289978" ref_strand="+" ref_description="SGN-E289978 [cLET-9-J12]">
      <seq>cagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaatactttttctgattgtctggtaaatattataaatgaaatgtttgtctgttaagtacaatgcttttaataaagagcatctacatttcgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="140778" stop="139606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140478" g_stop="140411" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="163" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140090" g_stop="139906" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="348" r_length="185" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E289978" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140478" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCT</genome_strand>
        <mrna_strand>CAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACTTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541682" ref_strand="+" ref_description="SGN-E541682 [TUS-62-J16](-)">
      <seq>gaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggtatcccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattagaattgagtttcaaattcagtaatactttttctgattgtctggtaaatattataaatgaaatgtttgtctgttaaaaaaaaaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142549" stop="139638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142249" g_stop="142191" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142190" i_stop="141550" i_length="641">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141549" g_stop="141304" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="305" r_length="246" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="395" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="479" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="515" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="605" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="700" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="140090" g_stop="139944" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="847" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="848" polyA_stop="864"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E541682" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142249" e_stop="142191"/>
          <exon e_start="141549" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="139944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAA</genome_strand>
        <mrna_strand>GAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTATCCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACTTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746687" ref_strand="+" ref_description="SGN-E746687 [GI|52139819]">
      <seq>atgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaaggaatttccttcatcaggaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142785" stop="139718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142485" g_stop="142411" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="291" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="606" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="696" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="780" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="816" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="817" r_stop="906" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="907" r_stop="1001" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="140090" g_stop="140018" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1002" r_stop="1074" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E746687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1074</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142485" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="140018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAG</genome_strand>
        <mrna_strand>ATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295318" ref_strand="+" ref_description="SGN-E295318 [cLET-20-H8]">
      <seq>gtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgtggaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgcctccaaagtacgacttggccgtactggagctgaagaagtctatcaacttggtcccctaaatgagtatgagaggattggactggagaaggccaagaaagagcttgctgagagcattcagaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="141757" stop="139739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141457" g_stop="141304" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="244" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="328" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="364" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="454" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140261" g_stop="140167" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="549" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140090" g_stop="140039" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="601" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E295318" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141457" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140167"/>
          <exon e_start="140090" e_stop="140039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAGGTAAGAACGCCAGGCTTGACCTGCAATTCTTCGGATATTAGATAAGTTAGTTCTCTGACTGAGTAAATTCCAACAGGATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGA</genome_strand>
        <mrna_strand>GTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTGGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG............................................................................GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295949" ref_strand="+" ref_description="SGN-E295949 [cLET-27-A13]">
      <seq>gaattgcaaagtgctgtcctaacgctattgtcaatttgattagtaatgcagtggactccacagttcctattgcagctgaagttttcaagaaagcaagcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctacggaagtagaggttgctgtcgttggaggtcatgctggggtgacaattttgcctattctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatatatggcatatgcagctgtaaaatttgcagatgtttgtctcaaaggcttaagaggagatgccggtgtggcggcttgagcttttgtaacttctcatgtcacagaactccctttctttgcctacaaagtacgacttggacgtactggagctgaagaagtctatcaacttggtcccctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="141767" stop="139879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141467" g_stop="141304" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="254" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="338" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="374" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="464" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140261" g_stop="140179" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="547" r_length="83" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E295949" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141467" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAA</genome_strand>
        <mrna_strand>GAATTGCAAAGTGCTGTCCTAACGCTATTGTCAATTTGATTAGTAATGCAGTGGACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAAGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTACGGAAGTAGAGGTTGCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTATTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATATATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAAGGCTTAAGAGGAGATGCCGGTGTGGCGGCTTGAGCTTTTGTAACTTCTCAT.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCTACAAAGTACGACTTGGACGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541685" ref_strand="+" ref_description="SGN-E541685 [TUS-62-J16]">
      <seq>caaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgcccngtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctttctttgccctcaaagtacgacttggccgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142817" stop="139914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142517" g_stop="142411" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142193" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="189" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142192" i_stop="141552" i_length="641">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141551" g_stop="141304" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="437" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="527" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="611" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="647" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="738" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="140261" g_stop="140214" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="786" r_length="48" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E541685" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142517" e_stop="142411"/>
          <exon e_start="142274" e_stop="142193"/>
          <exon e_start="141551" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATG-CCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACT</genome_strand>
        <mrna_strand>CAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCCNGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTTTCTTTGCCCTCAAAGTACGACTTGGCCGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292955" ref_strand="+" ref_description="SGN-E292955 [cLET-11-P8]">
      <seq>gaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgcttttgtagcttctcaggtcacagaactccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="141767" stop="139946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141467" g_stop="141304" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="254" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="338" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="374" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140500" g_stop="140411" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="464" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140261" g_stop="140246" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="480" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E292955" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141467" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140411"/>
          <exon e_start="140261" e_stop="140246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAGGTACTTCCTCAAACGTATTGGTTTCCCCCTATATAGCCAATCAAGAGCAGTAGGCTAGACATAACACACAAGTGCCGAAGTCCTAACAAAGGCCTACTTGTTTTCTTCTGTCAAATTTTCCTGACTGACCATTGGCAATTTTGACACAGGTCACAGAACTCCCTT</genome_strand>
        <mrna_strand>GAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG.....................................................................................................................................................GTCACAGAACTCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731863" ref_strand="+" ref_description="SGN-E731863 [LA28BF03]">
      <seq>atctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaagggcttaagaggagatgccggtgtggtggcttgtgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142733" stop="140123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142433" g_stop="142411" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="239" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="554" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="644" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="728" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="764" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140500" g_stop="140423" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="842" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E731863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142433" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTT</genome_strand>
        <mrna_strand>ATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468490" ref_strand="+" ref_description="SGN-E468490 [cSTB-4-P18]">
      <seq>gttgtgagagccagcacttttgtggcaggagtctcgggactagatcctaaggaagtttaggttcctgtggttggaggtcatgctggggtgacaattttgccgattctttcacaggtcaaacctgcttgcttcttcacacatgaggaaacagaatacttgaccaagcgcattcaagatggaggaacacaggtcgttgacgcaaaaaaaagggctggatctgcaactctatctatggcatatgcagcttttaaatttgcagatgtttgcctcaagggcttaagaggatatgccggtgtggtggcttgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="141326" stop="140127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141326" g_stop="141304" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="24" r_length="23" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="114" r_length="90" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="198" r_length="84" r_score="0.893"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="0.90"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="234" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140500" g_stop="140427" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="308" r_length="74" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E468490" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141326" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGC</genome_strand>
        <mrna_strand>TTGTGAGAGCCAGCACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGGAGTCTCGGGACTAGATCCTAAGGAAGTTTAGGTTCCTGTGGTTGGAGGTCATGCTGGGGTGACAATTTTGCCGATTCTTTCACAG.....................................................................................................GTCAAACCTGCTTGCTTCTTCACACATGAGGAAACAGAATACTTGACCAAGCGCATTCAAGATGGAGGAACACAGGTCGTTGAC........................................................................................................................GCAAAAAAAAGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTTTTAAATTTGCAGATGTTTGCCTCAAGGGCTTAAGAGGATATGCCGGTGTGGTGGCTTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560304" ref_strand="+" ref_description="SGN-E560304 [19937]">
      <seq>ctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgatggtgcacttacaggaatggaccttgntgatcatacctgctggtattccaagaaagccaggaatgacaagagatgatctttttaaaattaatgctgggattgtgaggaccctctgtgaaggaattgcaaaatgctgccctaatgctattgttaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaggcaggtacttatgatccaaagaagcttcttggagttacctcactagatgttgtgagagccaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtggttggaggtcatgctggggtgacaattttgccgcttctctcacaggtcaagcctccttgctccttcacacatgaggaaacagaatacttgaccaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgcctcaagggcttaagaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142422" stop="140149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142122" g_stop="142059" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="380" r_length="316" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="470" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="554" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="590" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140500" g_stop="140449" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="642" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E560304" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142122" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTG-TGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAG</genome_strand>
        <mrna_strand>CTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGATGGTGCACTTACAGGAATGGACCTTGNTGATCATACCTGCTGGTATTCCAAGAAAGCCAGGAATGACAAGAGATGATCTTTTTAAAATTAATGCTGGGATTGTGAGGACCCTCTGTGAAGGAATTGCAAAATGCTGCCCTAATGCTATTGTTAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAGGCAGGTACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTAGATGTTGTGAGAGCCAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTGGTTGGAGGTCATGCTGGGGTGACAATTTTGCCGCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACATGAGGAAACAGAATACTTGACCAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGCCTCAAGGGCTTAAGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727085" ref_strand="+" ref_description="SGN-E727085 [LA13CG06]">
      <seq>attctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgncactctatctatggcatatgcagctgtaaaatttgcaaatggttgtctcaagggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142814" stop="140158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142514" g_stop="142411" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="320" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="635" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="725" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="809" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="845" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140500" g_stop="140458" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="888" r_length="43" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E727085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142514" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCT</genome_strand>
        <mrna_strand>ATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGNCACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAAATGGTTGTCTCAAGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740284" ref_strand="+" ref_description="SGN-E740284 [LC20DC07]">
      <seq>aaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcnaaaaaaggggctggatctgcnactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcaggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142816" stop="140159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142516" g_stop="142411" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="322" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="637" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="727" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="811" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="847" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140500" g_stop="140459" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="848" r_stop="889" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E740284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142516" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGC</genome_strand>
        <mrna_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCNAAAAAAGGGGCTGGATCTGCNACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726458" ref_strand="+" ref_description="SGN-E726458 [LA11DE03]">
      <seq>caaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaaattgcagatgtttgtctcagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142817" stop="140160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142517" g_stop="142411" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="323" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="638" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="728" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="812" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="848" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140500" g_stop="140460" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="849" r_stop="889" r_length="41" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E726458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142517" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGG</genome_strand>
        <mrna_strand>CAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAAATTGCAGATGTTTGTCTCAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728572" ref_strand="+" ref_description="SGN-E728572 [LA18BA08]">
      <seq>tcaaataatatcattacatcctaattagaaacacaaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtctcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142850" stop="140162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142550" g_stop="142411" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="356" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="671" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="761" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="845" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="881" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140500" g_stop="140462" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="882" r_stop="920" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E728572" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142550" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATAATATCATTACATCCTAATTAGAAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAG</genome_strand>
        <mrna_strand>TCAAATAATATCATTACATCCTAATTAGAAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727258" ref_strand="+" ref_description="SGN-E727258 [LA14AG05]">
      <seq>ctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgtttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142811" stop="140166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142511" g_stop="142411" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="317" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="632" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="722" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="806" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="842" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140500" g_stop="140466" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="877" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E727258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142511" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTTGTCT</genome_strand>
        <mrna_strand>CTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473638" ref_strand="+" ref_description="SGN-E473638 [cSTB-32-B20]">
      <seq>aggaatggaccttgtgatcatacctgctggtattccacgaaagccaggaatgacaagagatgatctttttaaaattaatgctgggattgtgaggaccctctgtgaaggaattgcaaaatgctgccctaatgctattgttaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaggcaggtacttatgatccaaagaagcttcttggagttacctcactagatgttgtgagagccaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtggttggaggtcatgctggggtgacaattttgccgcttctctcacaggtcaagcctccttgctccttcacacatgaggaaacagaatacttgaccaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctgcaactctatctatggcatatgcagctgtaaaatttgcagatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="141874" stop="140170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141574" g_stop="141304" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="361" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="445" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="481" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140500" g_stop="140470" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="512" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E473638" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141574" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGCAGATGTTT</genome_strand>
        <mrna_strand>AGGAATGGACCTTGTGATCATACCTGCTGGTATTCCACGAAAGCCAGGAATGACAAGAGATGATCTTTTTAAAATTAATGCTGGGATTGTGAGGACCCTCTGTGAAGGAATTGCAAAATGCTGCCCTAATGCTATTGTTAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAGGCAGGTACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTAGATGTTGTGAGAGCCAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTGGTTGGAGGTCATGCTGGGGTGACAATTTTGCCGCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACATGAGGAAACAGAATACTTGACCAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGCAGATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726522" ref_strand="+" ref_description="SGN-E726522 [LA12AC02]">
      <seq>atcattacatcctaattagaaacacaaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacaaaggttgttgaggcaaaaaaaagggctggatctgcaactctatctatggcatatgcagctgtaaaatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142841" stop="140178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142541" g_stop="142411" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="347" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="662" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="752" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="836" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="837" r_stop="872" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140500" g_stop="140478" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="873" r_stop="895" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E726522" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142541" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTACATCCTAATTAGAAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGCAGCTGTAAAATTTGC</genome_strand>
        <mrna_strand>ATCATTACATCCTAATTAGAAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAAAGGTTGTTGAG........................................................................................................................GCAAAAAAAAGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATGCAGCTGTAAAATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709590" ref_strand="+" ref_description="SGN-E709590 [FA52CA11]">
      <seq>cgctaattctctctcattccaaagaatcaggaagatgcagccctcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaagttgttgaggcaaaaaaaggggctggatctgcaactctatctatgggatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142819" stop="140294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142519" g_stop="142411" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="325" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="640" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="730" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="814" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="850" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140500" g_stop="140493" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="851" r_stop="858" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E709590" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142519" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATGC</genome_strand>
        <mrna_strand>CGCTAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCCTCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAAGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GGATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737816" ref_strand="+" ref_description="SGN-E737816 [LC11BC12]">
      <seq>cacaaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaagggggctggatctgcaactctatctatggcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142819" stop="140294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142519" g_stop="142411" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="325" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="640" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="730" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="814" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="850" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="140500" g_stop="140494" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="851" r_stop="857" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E737816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142519" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
          <exon e_start="140500" e_stop="140494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATGGTTAGAATCACTCCTTGAATTATTTCAGTTTATGCTTTCTGAACATTGGATATGGGCATATTGAGTAAAACTGAATCTATTGTGATACCTATAGGCATATG</genome_strand>
        <mrna_strand>CACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAGGGGGCTGGATCTGCAACTCTATCTATG..............................................................................................GCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736501" ref_strand="+" ref_description="SGN-E736501 [LC06AA12]">
      <seq>aaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaagttgttgaggcaaaaaaaggggctggatctgcaactctatctatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142816" stop="140294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142516" g_stop="142411" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="322" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="637" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="727" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="811" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140630" g_stop="140595" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="847" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E736501" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142516" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG</genome_strand>
        <mrna_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAAGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740890" ref_strand="+" ref_description="SGN-E740890 [LC23BD03]">
      <seq>cgataaacaaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggcaaaaaaaggggctggatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142823" stop="140309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142522" g_stop="142411" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="114" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="330" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="645" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="735" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="819" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140630" g_stop="140609" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="820" r_stop="841" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E740890" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142522" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCTGGATCTG</genome_strand>
        <mrna_strand>ATAAACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG........................................................................................................................GCAAAAAAAGGGGCTGGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727166" ref_strand="+" ref_description="SGN-E727166 [LA13DF11]">
      <seq>atctttacatcctaattagaaacacaaattctctctcattccgaagaatcacgaagatgcatccatcaggtgcagaagttcacgcatcgaatagccataatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcaattcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgcattcaagatggaggaacagaggttgttgaagcaaaaaaaggggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142841" stop="140448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142541" g_stop="142411" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="348" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="663" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="753" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="837" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120">
            <donor d_prob="0.727" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140630" g_stop="140616" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="852" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E727166" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142541" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
          <exon e_start="140630" e_stop="140616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTACATCCTAATTAGAAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCAC-CAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAGGTATTGTGCAACTACCATCTAGCAAAACGCGTGCACTACTTGCAATTCAGCATATACTGATAGTTTCTTGAACCAGAATTGAACTGTCATTTGTCGCCTTAAGAATTTTTATCTTTGCAGGCAAAAAAAGGGGCT</genome_strand>
        <mrna_strand>ATCTTTACATCCTAATTAGAAACACAAATTCTCTCTCATTCCGAAGAATCACGAAGATGCATCCATCAGGTGCAGAAGTTCACGCATCGAATAGCCATAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAATTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAA........................................................................................................................GCAAAAAAAGGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740306" ref_strand="+" ref_description="SGN-E740306 [LC20DF01]">
      <seq>cagataacaaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacaaaatatttgactaagcgcattcaagatggaggaacagaggttgttgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142824" stop="140450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142525" g_stop="142411" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="330" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="645" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="735" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140751" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="819" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E740306" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142525" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG</genome_strand>
        <mrna_strand>CAGATA-ACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAAAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731249" ref_strand="+" ref_description="SGN-E731249 [LA26CD01]">
      <seq>ctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgactaagcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142807" stop="140480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142507" g_stop="142411" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="313" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="628" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="718" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140780" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="773" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E731249" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142507" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCA</genome_strand>
        <mrna_strand>CTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288190" ref_strand="+" ref_description="SGN-E288190 [cLES-7-D20]">
      <seq>actgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctanggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaggaaacagaatatttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142500" stop="140488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142200" g_stop="142059" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="457" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="547" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140834" g_stop="140788" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="594" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E288190" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142200" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGAC</genome_strand>
        <mrna_strand>ACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTANGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708019" ref_strand="+" ref_description="SGN-E708019 [FA34CE04]">
      <seq>cgtattatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaggtcaagcctccttgctccttcacacacgaagaaacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142790" stop="140496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142491" g_stop="142411" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="297" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="612" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="702" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="741" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E708019" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142491" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAA</genome_strand>
        <mrna_strand>CGTATTATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCTTCACACACGAAGAAACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726207" ref_strand="+" ref_description="SGN-E726207 [LA11AE12]">
      <seq>ccgcgtttatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactacatcctagggaaatagaaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttcctctcacaggtcaagcctccttgctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142777" stop="140517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142485" g_stop="142411" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="291" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="606" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="698" r_length="92" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140816" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="717" r_length="19" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E726207" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142485" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAG-AGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTT-CTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGCTCCT</genome_strand>
        <mrna_strand>CCGCGTTTATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTACATCCTAGGGAAATAGAAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCCTCTCACAG.....................................................................................................GTCAAGCCTCCTTGCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326856" ref_strand="+" ref_description="SGN-E326856 [cTOC-25-A14]">
      <seq>agaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttgcctcttctctcacaagtcaagcctccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142768" stop="140630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142468" g_stop="142411" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="274" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="589" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="679" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140820" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="694" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E326856" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142468" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTCCTTGC</genome_strand>
        <mrna_strand>AGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAA.....................................................................................................GTCAAGCCTCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724038" ref_strand="+" ref_description="SGN-E724038 [FC22DE06]">
      <seq>aagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcaaagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcattggaggtcatgctggggtgacaattttgcctctttctctcacaggtcaagcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142766" stop="140630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142466" g_stop="142411" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="272" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="587" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="678" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140825" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="688" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E724038" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142466" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTC-TTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCTC</genome_strand>
        <mrna_strand>AAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAAAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCATTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTTCTCTCACAG.....................................................................................................GTCAAGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619888" ref_strand="+" ref_description="SGN-E619888 [70583]">
      <seq>ttaaattttctttcattccaaagaatcaggaggaagatgcagccattaggtgcagaagttcaccaacgaattgccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatattgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtttcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgatggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaagccaggaatgacaagagatgatctttttaaaattaatgctgggattgtgaggaccctctgtgaaggaattgcaaaatgctgccctaatgctattgttaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaggcaggtacttatgatccaaaggaagcttctttggagttacctcactagatgtcgtgagagccaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggtccctgtggttggaaggtcatgctggggtgacaattttgccgcttctctcacaggtcaaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142798" stop="140630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142495" g_stop="142411" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="111" r_length="85" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="327" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="644" r_length="317" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140936" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="735" r_length="91" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101">
            <donor d_prob="0.916" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140834" g_stop="140826" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="744" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E619888" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142495" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140936"/>
          <exon e_start="140834" e_stop="140826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAA-GAAGCTTC-TTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGG-AGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAGGTCTAACAAATTTATACTTTAGCGGATATACAAAGAGACTTTCCTGCAGCTTGAAATCTACTCTGTGATACTGATATTGTGAACTTTGTAACACATTGTAGGTCAAGCCT</genome_strand>
        <mrna_strand>CAGGAGGAAGATGCAGCCATTAGGTGCAGAAGTTCACCAACGAATTGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATATTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTTTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGATGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAGCCAGGAATGACAAGAGATGATCTTTTTAAAATTAATGCTGGGATTGTGAGGACCCTCTGTGAAGGAATTGCAAAATGCTGCCCTAATGCTATTGTTAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAGGCAGGTACTTATGATCCAAAGGAAGCTTCTTTGGAGTTACCTCACTAGATGTCGTGAGAGCCAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTCCCTGTGGTTGGAAGGTCATGCTGGGGTGACAATTTTGCCGCTTCTCTCACAG.....................................................................................................GTCAAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290876" ref_strand="+" ref_description="SGN-E290876 [cLET-10-H9]">
      <seq>ggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctggggtgacaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142571" stop="140651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142271" g_stop="142059" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="528" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141025" g_stop="140951" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="603" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E290876" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142271" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTG</genome_strand>
        <mrna_strand>GGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340362" ref_strand="+" ref_description="SGN-E340362 [cTOF-2-L11]">
      <seq>aaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctagggaagtagaggttcctgtcgttggaggtcatgctgggggtgacatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142816" stop="140653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142516" g_stop="142411" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="322" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="637" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140953" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="711" r_length="74" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E340362" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142516" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCT-GGGGTGACAATTT</genome_strand>
        <mrna_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGGTGACATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347674" ref_strand="+" ref_description="SGN-E347674 [cTOF-26-P10]">
      <seq>agaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggcagaagtcttgggactagatcctanggaagtagaggttcctgtcgttggaggtcatgctgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142797" stop="140662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142497" g_stop="142411" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="303" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141304" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="618" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141025" g_stop="140963" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="681" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E347674" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142497" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141304"/>
          <exon e_start="141025" e_stop="140963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATCCACTTACTGCTGGATATTTTTAACCTTTGCTTCTCCTTTCTATCTGATTGAGGTACTTACAGGCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGG</genome_strand>
        <mrna_strand>AGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG......................................................................................................................................................................................................................................................................................GCAGAAGTCTTGGGACTAGATCCTANGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731962" ref_strand="+" ref_description="SGN-E731962 [LA28CG07]">
      <seq>aaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttttgtggtaagtgttcccagtataccactttttataagattgttctgttctcgtttaccttcatcaactttgcttgatttcgctgtttatttcttacatcctctatatcagctaactgtaaatatctaatctttcccaagaatcttggctttgttttttgatcgattttcgtggttttgaaatttcatctgacacttctgtcactgattttgtggctccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142816" stop="140788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142516" g_stop="142411" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="322" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141088" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="853" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E731962" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142516" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATC</genome_strand>
        <mrna_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214331" ref_strand="+" ref_description="SGN-E214331 [cLEC-77-A13]">
      <seq>aaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcangcacttatgatccaaagaaagcttcttggagttacctcacttgatgttgtgagagctaacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142816" stop="141008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142516" g_stop="142411" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="322" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141308" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="634" r_length="312" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E214331" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142516" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAG-AAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTT</genome_strand>
        <mrna_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCANGCACTTATGATCCAAAGAAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737678" ref_strand="+" ref_description="SGN-E737678 [LC10DC11]">
      <seq>gcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142770" stop="141008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142470" g_stop="142411" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="276" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141308" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="587" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E737678" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142470" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTT</genome_strand>
        <mrna_strand>GCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294453" ref_strand="-" ref_description="SGN-E294453 [cLET-14-D16](-)">
      <seq>aaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgccctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142533" stop="141009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142233" g_stop="142059" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141618" g_stop="141309" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="485" r_length="310" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E294453" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294453" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="142233" e_stop="142059"/>
          <exon e_start="141618" e_stop="141309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTT</genome_strand>
        <mrna_strand>AAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGCCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294452" ref_strand="+" ref_description="SGN-E294452 [cLET-14-D16]">
      <seq>aaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgccctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142533" stop="141009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142233" g_stop="142059" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141618" g_stop="141309" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="485" r_length="310" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E294452" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142233" e_stop="142059"/>
          <exon e_start="141618" e_stop="141309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTT</genome_strand>
        <mrna_strand>AAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGCCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322967" ref_strand="+" ref_description="SGN-E322967 [cTOB-30-F3]">
      <seq>tctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttncagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatgttgtgagagctaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142812" stop="141012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142512" g_stop="142411" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="318" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141312" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="625" r_length="307" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E322967" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142512" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACA</genome_strand>
        <mrna_strand>TCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTNCAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336770" ref_strand="+" ref_description="SGN-E336770 [cTOE-5-A3]">
      <seq>gaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacctcacttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142789" stop="141027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142489" g_stop="142411" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="295" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141327" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="587" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E336770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142489" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATG</genome_strand>
        <mrna_strand>GAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247490" ref_strand="+" ref_description="SGN-E247490 [cLEF-42-E11]">
      <seq>caaattctctctcattccaaagaatcatgaagatgcagccatcaggtgcagaagttcacgggcgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142817" stop="141037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142517" g_stop="142411" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="323" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141337" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="605" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E247490" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142517" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACC</genome_strand>
        <mrna_strand>CAAATTCTCTCTCATTCCAAAGAATCATGAAGATGCAGCCATCAGGTGCAGAAGTTCACGGGCGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298418" ref_strand="+" ref_description="SGN-E298418 [cLET-41-L24]">
      <seq>aaattctctctcattccaaagaatcaggaagatgccagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgctaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142816" stop="141038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142516" g_stop="142411" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="323" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141338" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="604" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E298418" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142516" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATG-CAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTAC</genome_strand>
        <mrna_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGCTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322770" ref_strand="+" ref_description="SGN-E322770 [cTOB-30-E9]">
      <seq>agatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctanggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacnagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattggtcatttgattaagtaatccagtgaactccacagttcctattgcagctgaagttttcaagaaagcaggcacttatgatccaaagaagcttcttggagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142569" stop="141039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142269" g_stop="142059" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141618" g_stop="141339" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="492" r_length="281" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E322770" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142269" e_stop="142059"/>
          <exon e_start="141618" e_stop="141339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATT-AGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTA</genome_strand>
        <mrna_strand>AGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTANGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACNAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGGTCATTTGATTAAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322725" ref_strand="+" ref_description="SGN-E322725 [cTOB-26-F4]">
      <seq>agatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcnatttgattagtaatccagtgaactccaccagtcctattgcagctgaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142569" stop="141083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142269" g_stop="142059" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141618" g_stop="141383" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="447" r_length="236" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E322725" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142269" e_stop="142059"/>
          <exon e_start="141618" e_stop="141383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTT</genome_strand>
        <mrna_strand>AGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCNATTTGATTAGTAATCCAGTGAACTCCACCAGTCCTATTGCAGCTGAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409286" ref_strand="+" ref_description="SGN-E409286 [PPI-13-L13]">
      <seq>aaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaattgccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatattgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtttcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgagggtgcacttacaggaatggaccttgtgatcatacctgctggtattccacgaaagccaggaatgacaagagatgatctttttaaaattaatgctgggattgtgaggaccctctgtgaaggaattgcaaaatgctgccctaatgctattgttaatttgattagtaatccagtgaactccacagttcctattgcagctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142799" stop="141088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142499" g_stop="142411" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="305" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141388" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="536" r_length="231" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E409286" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142499" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAA</genome_strand>
        <mrna_strand>AAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATTGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATATTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTTTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAGGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCACGAAAGCCAGGAATGACAAGAGATGATCTTTTTAAAATTAATGCTGGGATTGTGAGGACCCTCTGTGAAGGAATTGCAAAATGCTGCCCTAATGCTATTGTTAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409201" ref_strand="+" ref_description="SGN-E409201 [PPI-13-K14]">
      <seq>aaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaattgccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatattgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtttcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgagggtgcacttacaggaatggaccttgtgatcatacctgctggtattccacgaaagccaggaatgacaagagatgatctttttaaaattaatgctgggattgtgaggaccctctgtgaaggaattgcaaaatgctgccctaatgctattgttaatttgattagtaatccagtgaactccacagttcctattgcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142799" stop="141091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142499" g_stop="142411" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="305" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141391" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="533" r_length="228" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E409201" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142499" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCT</genome_strand>
        <mrna_strand>AAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATTGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATATTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTTTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAGGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCACGAAAGCCAGGAATGACAAGAGATGATCTTTTTAAAATTAATGCTGGGATTGTGAGGACCCTCTGTGAAGGAATTGCAAAATGCTGCCCTAATGCTATTGTTAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203106" ref_strand="+" ref_description="SGN-E203106 [cLEB-3-L13]">
      <seq>tcggcacgagctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccagaaaaacctgaaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttcctattgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142809" stop="141092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142509" g_stop="142411" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="109" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="325" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141392" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="552" r_length="227" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E203106" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142509" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGC</genome_strand>
        <mrna_strand>CTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAGAAAAACCTGAAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322812" ref_strand="+" ref_description="SGN-E322812 [cTOB-30-I10]">
      <seq>agatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaatccagtgaactccacagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142569" stop="141102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142269" g_stop="142059" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141618" g_stop="141402" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="428" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E322812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142269" e_stop="142059"/>
          <exon e_start="141618" e_stop="141402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTC</genome_strand>
        <mrna_strand>AGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265489" ref_strand="+" ref_description="SGN-E265489 [cLEI-14-C4]">
      <seq>aagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142788" stop="141121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142488" g_stop="142411" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="294" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141421" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="492" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E265489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142488" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAAT</genome_strand>
        <mrna_strand>AAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725963" ref_strand="+" ref_description="SGN-E725963 [LA08DE05]">
      <seq>caaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142817" stop="141123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142517" g_stop="142411" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="323" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141423" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="519" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E725963" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142517" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTA</genome_strand>
        <mrna_strand>CAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202590" ref_strand="+" ref_description="SGN-E202590 [cLEC-19-F19]">
      <seq>aaattctctctcattccaaagaatcacgaagatgcacccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtgaaggaattgcaaagtgctgtcctaatgctattgtcaatttgattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142816" stop="141124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142516" g_stop="142411" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="322" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141424" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="517" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E202590" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142516" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGT</genome_strand>
        <mrna_strand>AAATTCTCTCTCATTCCAAAGAATCACGAAGATGCACCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474194" ref_strand="+" ref_description="SGN-E474194 [cSTB-35-B12]">
      <seq>aaagagttgaaatatcctaatttgaaacagaaaagaccacaaattttctttcattccaaagaatcaggaggaagatgcagccattaggtgcagaagttcaccaacgaattgccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatattgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtttcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgagggtgcacttacaggaatggaccttgtgatcatacctgctggtattccacgaaagccaggaatgacaagagatgatctttttaaaattaatgctgggattgtgaggaccctctgtgaaggaattgcaaaatgctgtcctaatgctattgttaatttgattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142798" stop="141125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142522" g_stop="142411" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="149" r_length="115" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="365" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141425" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="559" r_length="194" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E474194" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142522" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAAATTCTCTCTCATTCCAAAGAATC---AGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAG</genome_strand>
        <mrna_strand>GACCACAAATTTTCTTTCATTCCAAAGAATCAGGAGGAAGATGCAGCCATTAGGTGCAGAAGTTCACCAACGAATTGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATATTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTTTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAGGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCACGAAAGCCAGGAATGACAAGAGATGATCTTTTTAAAATTAATGCTGGGATTGTGAGGACCCTCTGTGAAGGAATTGCAAAATGCTGTCCTAATGCTATTGTTAATTTGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298754" ref_strand="+" ref_description="SGN-E298754 [cLET-44-A21]">
      <seq>aaattctctctcattccaaagaatcaggaagatgcagcggtcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggtattccaagaaaacctgggatgacaagagatgatctttttaagattaatgctggaattgtgaggaccctctgtggaggaattgcaaagtgctgtcctaatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142816" stop="141141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142516" g_stop="142411" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142193" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="188" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142192" i_stop="141552" i_length="641">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141551" g_stop="141441" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="299" r_length="111" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E298754" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142516" e_stop="142411"/>
          <exon e_start="142274" e_stop="142193"/>
          <exon e_start="141551" e_stop="141441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTA</genome_strand>
        <mrna_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCGGTCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGTATTCCAAGAAAACCTGGGATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGGAGGAATTGCAAAGTGCTGTCCTAATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470698" ref_strand="+" ref_description="SGN-E470698 [cSTB-20-M11]">
      <seq>attttctttcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaattgccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatattgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtttcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgagggtgcacttacaggaatggaccttgtgatcatacctgctggtattccacgaaagccaggaatgacaagagatgatctttttaaattaatgctgggattgtgaggaccctctgtgaaggaattgcaaaatgctgccctaatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142814" stop="141141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142514" g_stop="142411" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="320" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141441" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="497" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E470698" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142514" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTA</genome_strand>
        <mrna_strand>ATTTTCTTTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATTGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATATTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTTTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAGGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCACGAAAGCCAGGAATGACAAGAGATGATCTTTTTAA-ATTAATGCTGGGATTGTGAGGACCCTCTGTGAAGGAATTGCAAAATGCTGCCCTAATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406025" ref_strand="+" ref_description="SGN-E406025 [PPI-2-O6]">
      <seq>aaattttctttcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaattgccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatattgggtgctgctggaggaattgggcagccacttgcaatggtgatgaagatgaatcctttagtttcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagcgagcttgagggtgcacttacaggaatggaccttgtgatcatacctgctggtattccacgaaagccaggaatgacaagagatgatctttttaaaattaatgctgggattgtgaggaccctctgtgaaagaattgcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142816" stop="141156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142516" g_stop="142411" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="322" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141456" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="485" r_length="163" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E406025" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142516" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGT</genome_strand>
        <mrna_strand>AAATTTTCTTTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATTGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATATTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGGTGATGAAGATGAATCCTTTAGTTTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGCGAGCTTGAGGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCACGAAAGCCAGGAATGACAAGAGATGATCTTTTTAAAATTAATGCTGGGATTGTGAGGACCCTCTGTGAAAGAATTGCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293878" ref_strand="+" ref_description="SGN-E293878 [cLET-13-E17]">
      <seq>aaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaaggtcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtgttccaagaaaacctggaatgacaagagatgatctttttaaaattaatgctggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142816" stop="141187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142516" g_stop="142411" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="322" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141487" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="454" r_length="132" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E293878" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142516" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATT</genome_strand>
        <mrna_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGGTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTGTTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAAATTAATGCTGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292705" ref_strand="+" ref_description="SGN-E292705 [cLET-11-D9]">
      <seq>gaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142796" stop="141187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142496" g_stop="142411" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="302" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141487" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="434" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E292705" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142496" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATT</genome_strand>
        <mrna_strand>GAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318950" ref_strand="+" ref_description="SGN-E318950 [cTOB-14-B11]">
      <seq>ttattctcattttatccataagagcattttccccctttttaaaaaagagttgaaataatatcattacatcctaattagaaacacaaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatctttttaagattaatgctggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142900" stop="141188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142600" g_stop="142411" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="406" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141488" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="537" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E318950" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142600" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTCATTTTATCCATAAGAGCATTTTCCCCCTTTTTAAAAAAGAGTTGAAATAATATCATTACATCCTAATTAGAAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAAT</genome_strand>
        <mrna_strand>TTATTCTCATTTTATCCATAAGAGCATTTTCCCCCTTTTTAAAAAAGAGTTGAAATAATATCATTACATCCTAATTAGAAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283937" ref_strand="+" ref_description="SGN-E283937 [cLER-13-F3]">
      <seq>gaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142789" stop="141205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142489" g_stop="142411" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="295" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141505" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="409" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E283937" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142489" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTT</genome_strand>
        <mrna_strand>GAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365390" ref_strand="+" ref_description="SGN-E365390 [cLPT-2-A15]">
      <seq>ttgagataatatcattacttgtattacatcctaattaggaacacaaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaattgccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggatactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142842" stop="141210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142538" g_stop="142411" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="150" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="366" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141510" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="475" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E365390" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142538" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACATCCTAATTAGAAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATC</genome_strand>
        <mrna_strand>ATTACATCCTAATTAGGAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATTGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGATACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476508" ref_strand="+" ref_description="SGN-E476508 [cSTB-45-I15]">
      <seq>tagaaacagaaaagacgcaaattttctttcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaattgccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatattgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtttcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgagggtgcacttacaggaatggaccttgtgatcatacctgctggtattccacgaaagccaggaatgacaagagatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142824" stop="141210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142522" g_stop="142411" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="124" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="340" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141510" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="449" r_length="109" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E476508" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142522" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATC</genome_strand>
        <mrna_strand>AGACGCAAATTTTCTTTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATTGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATATTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTTTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAGGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCACGAAAGCCAGGAATGACAAGAGATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298615" ref_strand="+" ref_description="SGN-E298615 [cLET-44-E19]">
      <seq>aaattctctctcattccaaagaatcaggaagacgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagacgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcaggtcttcatctctatgatgttgctaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142816" stop="141210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142516" g_stop="142411" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="322" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141510" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="431" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E298615" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142516" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATC</genome_strand>
        <mrna_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGACGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGACGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGGTCTTCATCTCTATGATGTTGCTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299298" ref_strand="+" ref_description="SGN-E299298 [cLET-43-N11]">
      <seq>aaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcaggtcttcatctctatgatgttgctaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacctgctggtattccaagaaaacctggaatgacaagagatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142816" stop="141210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142516" g_stop="142411" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="322" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141510" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="431" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E299298" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142516" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATC</genome_strand>
        <mrna_strand>AAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGGTCTTCATCTCTATGATGTTGCTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277591" ref_strand="+" ref_description="SGN-E277591 [cLER-6-M8]">
      <seq>aatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggtgcacttacaggaatggaccttgtgatcatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142744" stop="141251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142444" g_stop="142411" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="250" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141551" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="318" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E277591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142444" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACC</genome_strand>
        <mrna_strand>AATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283526" ref_strand="+" ref_description="SGN-E283526 [cLER-12-K16]">
      <seq>taattagaaacacaaattctctctcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttgaaggggcacttacaggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142829" stop="141268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142529" g_stop="142411" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="335" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141568" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="386" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E283526" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142529" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAGAAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATG</genome_strand>
        <mrna_strand>TAATTAGAAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGGGCACTTACAGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470599" ref_strand="+" ref_description="SGN-E470599 [cSTB-19-D22]">
      <seq>gttttatccacacaacatttttcccccttttaaaaaagagttgaaatatcctaattagaaacagaaaagacgcaaattttctttcattccaaagaatcaggaagatgcagccatcaggtgcagaagttcaccaacgaattgccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatattgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtttcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142880" stop="141287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142592" g_stop="142411" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.868"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="395" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141618" g_stop="141587" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="427" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E470599" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142592" e_stop="142411"/>
          <exon e_start="142274" e_stop="142059"/>
          <exon e_start="141618" e_stop="141587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATCCATAAGAGCATTTTCCCCCTTTTTAAAAAAGAGTTGAAATAATATCATTACATCCTAATTAGAAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGA</genome_strand>
        <mrna_strand>GTTTTATCCA-CACAACATTTTTCCCCCTTTTAAAAAAGAGTTGAAATATCCTAATTAGAAAC--AGAAAAGACGCAAATTTTCTTTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATTGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATATTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTTTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292508" ref_strand="+" ref_description="SGN-E292508 [cLET-16-H8]">
      <seq>tggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttggtaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggcaaagtgagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142518" stop="141289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142218" g_stop="142059" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141618" g_stop="141589" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="190" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E292508" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142218" e_stop="142059"/>
          <exon e_start="141618" e_stop="141589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTTGTGAGTTCTTTTCACCACTATCTTCACTTCTTTTTTGTTAGATTATCGAGTAAATTTCACGTATAGTCACTGAACTATATCCATGATAAATGTCAAAGTGGATAGACTTTCGTAACTCTACTGTTTATGGTTAGCGAAATTCAGTTACCTTAGTAAAACATTAGTATTTGTTACTTTAGTGTTATAGTGGATACGGATCAGTTACTGTGATGTGAGTAATGGTGAAGTTTAGTGACTATGCGTGAAATTTAATCCAGATTCGCACCGGGAAGTCCCAGTTTTGGGTAAAAGTGTTCCCAACAAAAGGCAACTCCATGCCCAGAGCGCAAATCCGAAAACTCTAGTTAAGAATGGAGAAGTACTTACCACTCCACCACAAGCTTTGGTGGTTGAAATTAACTCTTCTAATATGGCGAATAATATTCTATTGTTCATTTTAGGTGAGGGGTTTTCTAGGGCAAAGTGAGCTT</genome_strand>
        <mrna_strand>TGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGGTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGGTTTTCTAGGGCAAAGTGAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290819" ref_strand="+" ref_description="SGN-E290819 [cLET-10-E6]">
      <seq>ggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgttactgctgatattagccacatggacactggtgctgttgtgaggggttttctagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142571" stop="141754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142271" g_stop="142059" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E290819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>213</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142271" e_stop="142059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT</genome_strand>
        <mrna_strand>GGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203277" ref_strand="+" ref_description="SGN-E203277 [cLEB-3-B9]">
      <seq>gcacgagaaataatcaggaagatgcagccatcaggtgcagaagttcaccaacgaatagccagaatttcagctcatctttacccttcaaatccccagatgggagatgggtctattttggaaagaacaaattgcagagcaaaaggtggagcagctggattcaaagttgctatactgggtgctgctggaggaattgggcagccacttgcaatgttgatgaagatgaatcctttagtctcagttcttcatctctatgatgttgttaatgctcctggtgatactgctgatattagccacatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="142799" stop="141772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142495" g_stop="142411" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="96" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142274" g_stop="142072" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="299" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E203277" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142495" e_stop="142411"/>
          <exon e_start="142274" e_stop="142072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAGGTCTGTACTCTTTCTACTGGGTATTCAGTTGAATGAATTTTTAAAGTTCAATAGATGGTGAATTCTTGAAATTCTGACTTTACTTGAACAAATTATTTGATAATTAAAACTGTTGTTTTTCGCTATACTCGTAAAGATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGA</genome_strand>
        <mrna_strand>AATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG........................................................................................................................................ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGATACTGCTGATATTAGCCACATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211955" ref_strand="+" ref_description="SGN-E211955 [cLEC-66-M20]">
      <seq>atattatgttcccatagactaaaccaaacgtcaaatacagacaataccaaactttcttctctatttctcttactagccaaaaaaaaaaaaaatgtcagccagtgacaactttttccggccattcccagttttattgctctgttttttagttttcttgatttctccttctcatcaacaagatgagttactactcatgcaattcaaatccactctgaaaacaatacaaagttcagagctttttgacacgtggacacctcagaataacatttgcaacttcactggaattttctgtgattctgacagtaaattggttaaagaaatcaatctttctgaacagaatctatctggggttgtctcttttgattcattatgttctctgaaatccctacaaaagatatctcttggtactaattacttgtacggtagagtcagtgaccatttgaaaaactgtacaaacttgcagtatttggatttgggtagcaattctttttcaggggaagttccaaatttgtcttctttaagccaattggagtttttgaatctcaataggagtggattctctggttcatttccttggaggtcacctagcaatcttactaatctaactttcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="148614" stop="149825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="148914" g_stop="149525" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E211955" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="148914" e_stop="149525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTATGTTCCCATAGACTAAACCAAACGTCAAATACAGACAATACCAAACTTTCTTCTCTATTTCTCTTACTAGCC-A-AAAAAAAAAAATGTCAGCCAGTGACAACTTTTTCCGGCCATTCCCAGTTTTATTGCTCTGTTTTTTAGTTTTCTTGATTTCTCCTTCTCATCAACAAGATGAGTTACTACTCATGCAATTCAAATCCACTCTGAAAACAATACAAAGTTCAGAGCTTTTTGACACGTGGACACCTCAGAATAACATTTGCAACTTCACTGGAATTTTCTGTGATTCTGACAGTAAATTGGTTAAAGAAATCAATCTTTCTGAACAGAATCTATCTGGGGTTGTCTCTTTTGATTCATTATGTTCTCTGAAATCCCTACAAAAGATATCTCTTGGTACTAATTACTTGTACGGTAGAGTCAGTGACCATTTGAAAAACTGTACAAACTTGCAGTATTTGGATTTGGGTAGCAATTCTTTTTCAGGGGAAGTTCCAAATTTGTCTTCTTTAAGCCAATTGGAGTTTTTGAATCTCAATAGGAGTGGATTCTCTGGTTCATTTCCTTGGAGTTCA-CTAGCAAATCTTACTAATCTAACTTTCTTGA</genome_strand>
        <mrna_strand>ATATTATGTTCCCATAGACTAAACCAAACGTCAAATACAGACAATACCAAACTTTCTTCTCTATTTCTCTTACTAGCCAAAAAAAAAAAAAATGTCAGCCAGTGACAACTTTTTCCGGCCATTCCCAGTTTTATTGCTCTGTTTTTTAGTTTTCTTGATTTCTCCTTCTCATCAACAAGATGAGTTACTACTCATGCAATTCAAATCCACTCTGAAAACAATACAAAGTTCAGAGCTTTTTGACACGTGGACACCTCAGAATAACATTTGCAACTTCACTGGAATTTTCTGTGATTCTGACAGTAAATTGGTTAAAGAAATCAATCTTTCTGAACAGAATCTATCTGGGGTTGTCTCTTTTGATTCATTATGTTCTCTGAAATCCCTACAAAAGATATCTCTTGGTACTAATTACTTGTACGGTAGAGTCAGTGACCATTTGAAAAACTGTACAAACTTGCAGTATTTGGATTTGGGTAGCAATTCTTTTTCAGGGGAAGTTCCAAATTTGTCTTCTTTAAGCCAATTGGAGTTTTTGAATCTCAATAGGAGTGGATTCTCTGGTTCATTTCCTTGGAGGTCACCTAGC-AATCTTACTAATCTAACTTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274881" ref_strand="+" ref_description="SGN-E274881 [cLEN-16-E3]">
      <seq>tcatgggcttttcttttttacattgatgtttctgagaatatgtttactggttcgataccgcctgccctcgcccaagaaagggagtatgactgatcttttgcttctccagaacaacttcactggtgggataccttccaactatgctaattgtttgtcgttgcagcgtttaagggttagcaacaattcactttcaggagtagtccctagtggaatttggagtttgccagatttggaaatcattgatctcacattgaatctatttgaaggcccagtgacatcaaatatcggtgaggcaaagtctttagcacagttgattctagcctacaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="149720" stop="150630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150002" g_stop="150330" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E274881" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150002" e_stop="150330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGGCAGAACTTCAGTACATTGATGTTTCTGAGAATATGTTTACTGGTTCGATACCGCCTGATAT-GTGCAAGAAAGGGAGTATGACTGATCTTTTGCTTCTCCAGAACAACTTCACTGGTGGGATACCTTCGAACTATGCTAATTGTTTGTCGTTGCAGCGTTTAAGGGTTAGCAACAATTCACTTTCAGGAGTAGTCCCTAGTGGAATTTGGAGTTTGCCAGATTTGGAAATCATTGATCTCACATTGAATCTATTTGAAGGCCCAGTGACATCAAATATCGGTGAGGCAAAGTCTTTAGCACAGTTGTTTCTAGCCTACAACCA</genome_strand>
        <mrna_strand>TCATGGGCTTTTCTTTTTTACATTGATGTTTCTGAGAATATGTTTACTGGTTCGATACCGCCTGCCCTCGCCCAAGAAAGGGAGTATGACTGATCTTTTGCTTCTCCAGAACAACTTCACTGGTGGGATACCTTCCAACTATGCTAATTGTTTGTCGTTGCAGCGTTTAAGGGTTAGCAACAATTCACTTTCAGGAGTAGTCCCTAGTGGAATTTGGAGTTTGCCAGATTTGGAAATCATTGATCTCACATTGAATCTATTTGAAGGCCCAGTGACATCAAATATCGGTGAGGCAAAGTCTTTAGCACAGTTGATTCTAGCCTACAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378026" ref_strand="+" ref_description="SGN-E378026 [TUS-21-B20]">
      <seq>actgtagcatcacaagtgaggactcaaatatgctggtttatgaatacttaactaatggaagcttatgggaccgattgcacacgtctcagaaagtcaagatggattggttggtgagatatgacattgcattaggtgctgctcaagggcttgagtatctgcatcacggatatgacagacccgtgatgcatcgggatgtcaagtctagcaacatcttgttggatgaacagatgaagcccaaaattgctgattttggactagccaaagttttgcatgttaatggtactaaggactcttctcaggttgtagctgggacgcatggctacattgctcctgagtatgcttacacaaccaaggtgaccgagaagagtgatgtctatagcttcggggtggtgctaatggaattggtgactggaaagaagccagtggaggcagaatacggggagaacattgacatagtccaatgggtttgtagcaagataagaaacaatactagcatgatcgatttggtggattcaagcattttcgaggggttcaaagaagatgcagttgaggttcttaaaattgcagttcattgcacatcaaggacgccagcattaagaccttccatgaggatggtagttcatatgctggaagaagccgagccttgcaagctgacagatgtagtcgtgaattcaccaaatgaggatggcaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="150933" stop="152324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151233" g_stop="151565" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151566" i_stop="151663" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151664" g_stop="152024" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="694" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E378026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151233" e_stop="151565"/>
          <exon e_start="151664" e_stop="152024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTAGCATCACAAGTGAGGACTCAAATATGCTGGTTTATGAATACTTAACTAATGGAAGCTTATGGGACCGATTGCACACGTCTCAGAAAGTCAAGATGGATTGGTTGGTGAGATATGACATTGCATTAGGTGCTGCTCAAGGGCTTGAGTATCTGCATCACGGATATGACAGACCCGTGATGCATCGGGATGTCAAGTCTAGCAACATCTTGTTGGATGAACAGATGAAGCCCAAAATTGCTGATTTTGGACTAGCCAAAGTTTTGCATGTTAATGGTACTAAGGACTCTTCTCAGGTTGTAGCTGGGACGCATGGCTACATTGCTCCTGGTACATATTTTGCTCTTCCCTTTTCCATTTCATTGTCACTTGAAAATAATTTTGGCAAATTCTAACTTCTATTCTTTCTTCATTGTTTGACCTAACAGAGTATGCTTACACAACCAAGGTGACCGAGAAGAGTGATGTCTATAGCTTCGGGGTGGTGCTAATGGAATTGGTGACTGGAAAGAAGCCAGTGGAGGCAGAATACGGGGAGAACATTGACATAGTCCAATGGGTTTGTAGCAAGATAAGAAACAATACTAGCATGATCGATTTGGTGGATTCAAGCATTTTCGAGGGGTTCAAAGAAGATGCAGTTGAGGTTCTTAAAATTGCAGTTCATTGCACATCAAGGACGCCAGCATTAAGACCTTCCATGAGGATGGTAGTTCATATGCTGGAAGAAGCCGAGCCTTGCAAGCTGACAGATGTAGTCGTGAATTCACCAAATGAGGATGGCAGGAA</genome_strand>
        <mrna_strand>ACTGTAGCATCACAAGTGAGGACTCAAATATGCTGGTTTATGAATACTTAACTAATGGAAGCTTATGGGACCGATTGCACACGTCTCAGAAAGTCAAGATGGATTGGTTGGTGAGATATGACATTGCATTAGGTGCTGCTCAAGGGCTTGAGTATCTGCATCACGGATATGACAGACCCGTGATGCATCGGGATGTCAAGTCTAGCAACATCTTGTTGGATGAACAGATGAAGCCCAAAATTGCTGATTTTGGACTAGCCAAAGTTTTGCATGTTAATGGTACTAAGGACTCTTCTCAGGTTGTAGCTGGGACGCATGGCTACATTGCTCCTG..................................................................................................AGTATGCTTACACAACCAAGGTGACCGAGAAGAGTGATGTCTATAGCTTCGGGGTGGTGCTAATGGAATTGGTGACTGGAAAGAAGCCAGTGGAGGCAGAATACGGGGAGAACATTGACATAGTCCAATGGGTTTGTAGCAAGATAAGAAACAATACTAGCATGATCGATTTGGTGGATTCAAGCATTTTCGAGGGGTTCAAAGAAGATGCAGTTGAGGTTCTTAAAATTGCAGTTCATTGCACATCAAGGACGCCAGCATTAAGACCTTCCATGAGGATGGTAGTTCATATGCTGGAAGAAGCCGAGCCTTGCAAGCTGACAGATGTAGTCGTGAATTCACCAAATGAGGATGGCAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244660" ref_strand="+" ref_description="SGN-E244660 [cLED-38-I17]">
      <seq>actgtagcatcacaagtgaggactcaaatatgctggtttatgaatacttaactaatggaagcttatgggaccgattgcacacgtctcagaaagtcaagatggattggttggtgagatatgacattgcattaggtgctgctcaagggcttgagtatctgcatcacggatatgacagacccgtgatgcatcgggatgtcaagtctagcaacatcttgttggatgaacagatgaagcccaaaattgctgattttggactagccaaagttttgcatgttaatggtactaaggactcttctcaggttgtagctgggacgcatggctacattgctcctgagtatgcttacacaaccaaggtgaccgagaagagtgatgtctatagcttcggggtggtgctaatggaattggtgactggaaagaagccagtggaggcagaatacggggagaacattgacatagtccaatgggtttgtagcaagataagaaacaatactagcatgatcgatttggtggattcaagcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="150933" stop="152153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151233" g_stop="151565" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151566" i_stop="151663" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151664" g_stop="151853" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="523" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E244660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151233" e_stop="151565"/>
          <exon e_start="151664" e_stop="151853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTAGCATCACAAGTGAGGACTCAAATATGCTGGTTTATGAATACTTAACTAATGGAAGCTTATGGGACCGATTGCACACGTCTCAGAAAGTCAAGATGGATTGGTTGGTGAGATATGACATTGCATTAGGTGCTGCTCAAGGGCTTGAGTATCTGCATCACGGATATGACAGACCCGTGATGCATCGGGATGTCAAGTCTAGCAACATCTTGTTGGATGAACAGATGAAGCCCAAAATTGCTGATTTTGGACTAGCCAAAGTTTTGCATGTTAATGGTACTAAGGACTCTTCTCAGGTTGTAGCTGGGACGCATGGCTACATTGCTCCTGGTACATATTTTGCTCTTCCCTTTTCCATTTCATTGTCACTTGAAAATAATTTTGGCAAATTCTAACTTCTATTCTTTCTTCATTGTTTGACCTAACAGAGTATGCTTACACAACCAAGGTGACCGAGAAGAGTGATGTCTATAGCTTCGGGGTGGTGCTAATGGAATTGGTGACTGGAAAGAAGCCAGTGGAGGCAGAATACGGGGAGAACATTGACATAGTCCAATGGGTTTGTAGCAAGATAAGAAACAATACTAGCATGATCGATTTGGTGGATTCAAGCATTTT</genome_strand>
        <mrna_strand>ACTGTAGCATCACAAGTGAGGACTCAAATATGCTGGTTTATGAATACTTAACTAATGGAAGCTTATGGGACCGATTGCACACGTCTCAGAAAGTCAAGATGGATTGGTTGGTGAGATATGACATTGCATTAGGTGCTGCTCAAGGGCTTGAGTATCTGCATCACGGATATGACAGACCCGTGATGCATCGGGATGTCAAGTCTAGCAACATCTTGTTGGATGAACAGATGAAGCCCAAAATTGCTGATTTTGGACTAGCCAAAGTTTTGCATGTTAATGGTACTAAGGACTCTTCTCAGGTTGTAGCTGGGACGCATGGCTACATTGCTCCTG..................................................................................................AGTATGCTTACACAACCAAGGTGACCGAGAAGAGTGATGTCTATAGCTTCGGGGTGGTGCTAATGGAATTGGTGACTGGAAAGAAGCCAGTGGAGGCAGAATACGGGGAGAACATTGACATAGTCCAATGGGTTTGTAGCAAGATAAGAAACAATACTAGCATGATCGATTTGGTGGATTCAAGCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232041" ref_strand="+" ref_description="SGN-E232041 [cLED-7-O22]">
      <seq>actgtagcatcacaagtgaggactcaaatatgctggtttatgaatacttaactaatggaagcttatgggaccgattgcacacgtctcagaaagtcaagatggattggttggtgagatatgacattgcattaggtgctgctcaagggcttgagtatctgcatcacggatatgacagacccgtgatgcatcgggatgtcaagtctagcaacatcttgttggatgaacagatgaagcccaaaattgctgattttggactagccaaagttttgcatgttaatggtactaaggactcttctcaggttgtagctgggacgcatggctacattgctcctgagtatgcttacacaaccaaggtgaccgagaagagtgatgtctatagcttcggggtggtgctaatggaattggtgactggaaagaagccagtggaggcagaatacggggagaacattgacatagtccaatgggtttgtagcaagataagaaacaatactagcatgatcgatttggtggattcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="150933" stop="152149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151233" g_stop="151565" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151566" i_stop="151663" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151664" g_stop="151849" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="519" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E232041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151233" e_stop="151565"/>
          <exon e_start="151664" e_stop="151849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTAGCATCACAAGTGAGGACTCAAATATGCTGGTTTATGAATACTTAACTAATGGAAGCTTATGGGACCGATTGCACACGTCTCAGAAAGTCAAGATGGATTGGTTGGTGAGATATGACATTGCATTAGGTGCTGCTCAAGGGCTTGAGTATCTGCATCACGGATATGACAGACCCGTGATGCATCGGGATGTCAAGTCTAGCAACATCTTGTTGGATGAACAGATGAAGCCCAAAATTGCTGATTTTGGACTAGCCAAAGTTTTGCATGTTAATGGTACTAAGGACTCTTCTCAGGTTGTAGCTGGGACGCATGGCTACATTGCTCCTGGTACATATTTTGCTCTTCCCTTTTCCATTTCATTGTCACTTGAAAATAATTTTGGCAAATTCTAACTTCTATTCTTTCTTCATTGTTTGACCTAACAGAGTATGCTTACACAACCAAGGTGACCGAGAAGAGTGATGTCTATAGCTTCGGGGTGGTGCTAATGGAATTGGTGACTGGAAAGAAGCCAGTGGAGGCAGAATACGGGGAGAACATTGACATAGTCCAATGGGTTTGTAGCAAGATAAGAAACAATACTAGCATGATCGATTTGGTGGATTCAAGCA</genome_strand>
        <mrna_strand>ACTGTAGCATCACAAGTGAGGACTCAAATATGCTGGTTTATGAATACTTAACTAATGGAAGCTTATGGGACCGATTGCACACGTCTCAGAAAGTCAAGATGGATTGGTTGGTGAGATATGACATTGCATTAGGTGCTGCTCAAGGGCTTGAGTATCTGCATCACGGATATGACAGACCCGTGATGCATCGGGATGTCAAGTCTAGCAACATCTTGTTGGATGAACAGATGAAGCCCAAAATTGCTGATTTTGGACTAGCCAAAGTTTTGCATGTTAATGGTACTAAGGACTCTTCTCAGGTTGTAGCTGGGACGCATGGCTACATTGCTCCTG..................................................................................................AGTATGCTTACACAACCAAGGTGACCGAGAAGAGTGATGTCTATAGCTTCGGGGTGGTGCTAATGGAATTGGTGACTGGAAAGAAGCCAGTGGAGGCAGAATACGGGGAGAACATTGACATAGTCCAATGGGTTTGTAGCAAGATAAGAAACAATACTAGCATGATCGATTTGGTGGATTCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233471" ref_strand="+" ref_description="SGN-E233471 [cLED-9-H2]">
      <seq>actgtagcatcacaagtgaggactcaaatatgctggtttatgaatacttaactaatggaagcttatgggaccgattgcacacgtctcagaaagtcaagatggattggttggtgagatatgacattgcattaggtgctgctcaagggcttgagtatctgcatcacggatatgacagacccgtgatgcatcgggatgtcaagtctagcaacatcttgttggatgaacagatgaagcccaaaattgctgattttggactagccaaagttttgcatgttaatggtactaaggactcttctcaggttgtagctgggacgcatggctacattgctcctgagtatgcttacacaaccaaggtgaccgagaagagtgatgtctatagcttcggggtggtgctaatggaattggtgactggaaagaagccagtggaggcagaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="150933" stop="152067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151233" g_stop="151565" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151566" i_stop="151663" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151664" g_stop="151767" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="437" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E233471" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151233" e_stop="151565"/>
          <exon e_start="151664" e_stop="151767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTAGCATCACAAGTGAGGACTCAAATATGCTGGTTTATGAATACTTAACTAATGGAAGCTTATGGGACCGATTGCACACGTCTCAGAAAGTCAAGATGGATTGGTTGGTGAGATATGACATTGCATTAGGTGCTGCTCAAGGGCTTGAGTATCTGCATCACGGATATGACAGACCCGTGATGCATCGGGATGTCAAGTCTAGCAACATCTTGTTGGATGAACAGATGAAGCCCAAAATTGCTGATTTTGGACTAGCCAAAGTTTTGCATGTTAATGGTACTAAGGACTCTTCTCAGGTTGTAGCTGGGACGCATGGCTACATTGCTCCTGGTACATATTTTGCTCTTCCCTTTTCCATTTCATTGTCACTTGAAAATAATTTTGGCAAATTCTAACTTCTATTCTTTCTTCATTGTTTGACCTAACAGAGTATGCTTACACAACCAAGGTGACCGAGAAGAGTGATGTCTATAGCTTCGGGGTGGTGCTAATGGAATTGGTGACTGGAAAGAAGCCAGTGGAGGCAGAATAC</genome_strand>
        <mrna_strand>ACTGTAGCATCACAAGTGAGGACTCAAATATGCTGGTTTATGAATACTTAACTAATGGAAGCTTATGGGACCGATTGCACACGTCTCAGAAAGTCAAGATGGATTGGTTGGTGAGATATGACATTGCATTAGGTGCTGCTCAAGGGCTTGAGTATCTGCATCACGGATATGACAGACCCGTGATGCATCGGGATGTCAAGTCTAGCAACATCTTGTTGGATGAACAGATGAAGCCCAAAATTGCTGATTTTGGACTAGCCAAAGTTTTGCATGTTAATGGTACTAAGGACTCTTCTCAGGTTGTAGCTGGGACGCATGGCTACATTGCTCCTG..................................................................................................AGTATGCTTACACAACCAAGGTGACCGAGAAGAGTGATGTCTATAGCTTCGGGGTGGTGCTAATGGAATTGGTGACTGGAAAGAAGCCAGTGGAGGCAGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236245" ref_strand="+" ref_description="SGN-E236245 [cLED-20-P1]">
      <seq>actgtagcatcacatttgaggactcaaatatgctggtttatgaatacttaactaatggaagcttatgggaccgattgcacacgtcttataaagtcaagatggattggttggtgagatatgacattgcattaggtgctgctcaagggcttgagtatctgcatcacggatatgacagacccgtgatgcatcgggatgtcaagtctagcaacatcttgttggatgaacagatgaagcccaaaatttgctgattttggactagccaaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="150933" stop="151800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151233" g_stop="151500" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E236245" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151233" e_stop="151500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTAGCATCACAAGTGAGGACTCAAATATGCTGGTTTATGAATACTTAACTAATGGAAGCTTATGGGACCGATTGCACACGTCTCAGAAAGTCAAGATGGATTGGTTGGTGAGATATGACATTGCATTAGGTGCTGCTCAAGGGCTTGAGTATCTGCATCACGGATATGACAGACCCGTGATGCATCGGGATGTCAAGTCTAGCAACATCTTGTTGGATGAACAGATGAAGCCCAAAA-TTGCTGATTTTGGACTAGCCAAAGTTTT</genome_strand>
        <mrna_strand>ACTGTAGCATCACATTTGAGGACTCAAATATGCTGGTTTATGAATACTTAACTAATGGAAGCTTATGGGACCGATTGCACACGTCTTATAAAGTCAAGATGGATTGGTTGGTGAGATATGACATTGCATTAGGTGCTGCTCAAGGGCTTGAGTATCTGCATCACGGATATGACAGACCCGTGATGCATCGGGATGTCAAGTCTAGCAACATCTTGTTGGATGAACAGATGAAGCCCAAAATTTGCTGATTTTGGACTAGCCAAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303579" ref_strand="+" ref_description="SGN-E303579 [cLEY-6-C11]">
      <seq>ctgctcaagggcttgagtatctgcatcacggatatgacagacccgtgatgcatcgggatgtcaagtctagcaacatcttgttggatgaacagatgaagcccaaaattgctgattttggactagccaaagttttgcatgttaatggtactaaggactcttctcaggttgtagctgggacgcatggctacattgctcctgagtatgcttacacaaccaaggtgaccgagaagagtgatgtctatagcttcggggtggtgctaatggaattggtgactggaaagaagccagtggaggcagaatacggggagaacattgacatagtccaatgggtttgtagcaagataagaaacaatactagcatgatcgatttggtggattcaagcattttcgaggggttcaaagaagatgcagttgaggttcttaaaattgcagttcattgcacatcaaggacgccagcattaagaccttccatgaggatggtagttcatatgctggaagaagccgagccttgcaagctgacagatgtagtcgtgaattcaccaaatgaggatggcaggaaacaaggacttgctaactaatggcaagtcatgatgttgaactatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="151068" stop="152370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151368" g_stop="151565" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151566" i_stop="151663" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151664" g_stop="152070" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="605" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E303579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151368" e_stop="151565"/>
          <exon e_start="151664" e_stop="152070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTCAAGGGCTTGAGTATCTGCATCACGGATATGACAGACCCGTGATGCATCGGGATGTCAAGTCTAGCAACATCTTGTTGGATGAACAGATGAAGCCCAAAATTGCTGATTTTGGACTAGCCAAAGTTTTGCATGTTAATGGTACTAAGGACTCTTCTCAGGTTGTAGCTGGGACGCATGGCTACATTGCTCCTGGTACATATTTTGCTCTTCCCTTTTCCATTTCATTGTCACTTGAAAATAATTTTGGCAAATTCTAACTTCTATTCTTTCTTCATTGTTTGACCTAACAGAGTATGCTTACACAACCAAGGTGACCGAGAAGAGTGATGTCTATAGCTTCGGGGTGGTGCTAATGGAATTGGTGACTGGAAAGAAGCCAGTGGAGGCAGAATACGGGGAGAACATTGACATAGTCCAATGGGTTTGTAGCAAGATAAGAAACAATACTAGCATGATCGATTTGGTGGATTCAAGCATTTTCGAGGGGTTCAAAGAAGATGCAGTTGAGGTTCTTAAAATTGCAGTTCATTGCACATCAAGGACGCCAGCATTAAGACCTTCCATGAGGATGGTAGTTCATATGCTGGAAGAAGCCGAGCCTTGCAAGCTGACAGATGTAGTCGTGAATTCACCAAATGAGGATGGCAGGAAACAAGGACTTGCTAACTAATGGCAAGTCATGATGTTGAACTATATC</genome_strand>
        <mrna_strand>CTGCTCAAGGGCTTGAGTATCTGCATCACGGATATGACAGACCCGTGATGCATCGGGATGTCAAGTCTAGCAACATCTTGTTGGATGAACAGATGAAGCCCAAAATTGCTGATTTTGGACTAGCCAAAGTTTTGCATGTTAATGGTACTAAGGACTCTTCTCAGGTTGTAGCTGGGACGCATGGCTACATTGCTCCTG..................................................................................................AGTATGCTTACACAACCAAGGTGACCGAGAAGAGTGATGTCTATAGCTTCGGGGTGGTGCTAATGGAATTGGTGACTGGAAAGAAGCCAGTGGAGGCAGAATACGGGGAGAACATTGACATAGTCCAATGGGTTTGTAGCAAGATAAGAAACAATACTAGCATGATCGATTTGGTGGATTCAAGCATTTTCGAGGGGTTCAAAGAAGATGCAGTTGAGGTTCTTAAAATTGCAGTTCATTGCACATCAAGGACGCCAGCATTAAGACCTTCCATGAGGATGGTAGTTCATATGCTGGAAGAAGCCGAGCCTTGCAAGCTGACAGATGTAGTCGTGAATTCACCAAATGAGGATGGCAGGAAACAAGGACTTGCTAACTAATGGCAAGTCATGATGTTGAACTATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378025" ref_strand="+" ref_description="SGN-E378025 [TUS-21-B20](-)">
      <seq>gcatcacggatatgacagacccgtgatgcatcgggatgtcaagtctagcaacatcttgttggatgaacagatgaagcccaaaattgctgattttggactagccaaagttttgcatgttaatggtactaaggactcttctcaggttgtagctgggacgcatggctacattgctcctgagtatgcttacacaaccaaggtgaccgagaagagtgatgtctatagcttcggggtggtgctaatggaattggtgactggaaagaagccagtggaggcagaatacggggagaacattgacatagtccaatgggtttgtagcaagataagaaacaatactagcatgatcgatttggtggattcaagcattttcgaggggttcaaagaagatgcagttgaggttcttaaaattgcagttcattgcacatcaaggacgccagcattaagaccttccatgaggatggtagttcatatgctggaagaagccgagccttgcaagctgacagatgtagtcgtgaattcaccaaatgaggatggcaggaaacaaggacttgctaactaatggcaagtcatgatgttgaactatatctcgtttttgcagaatattgaattatgttgtaagttcacaaagaatgcttagtgtacatatgacacttttgaagaaatagtgtatttcacagctgcattaataaatccagctagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="151090" stop="152490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151390" g_stop="151565" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151566" i_stop="151663" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="151664" g_stop="152186" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="699" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="714"/>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E378025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151390" e_stop="151565"/>
          <exon e_start="151664" e_stop="152186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCACGGATATGACAGACCCGTGATGCATCGGGATGTCAAGTCTAGCAACATCTTGTTGGATGAACAGATGAAGCCCAAAATTGCTGATTTTGGACTAGCCAAAGTTTTGCATGTTAATGGTACTAAGGACTCTTCTCAGGTTGTAGCTGGGACGCATGGCTACATTGCTCCTGGTACATATTTTGCTCTTCCCTTTTCCATTTCATTGTCACTTGAAAATAATTTTGGCAAATTCTAACTTCTATTCTTTCTTCATTGTTTGACCTAACAGAGTATGCTTACACAACCAAGGTGACCGAGAAGAGTGATGTCTATAGCTTCGGGGTGGTGCTAATGGAATTGGTGACTGGAAAGAAGCCAGTGGAGGCAGAATACGGGGAGAACATTGACATAGTCCAATGGGTTTGTAGCAAGATAAGAAACAATACTAGCATGATCGATTTGGTGGATTCAAGCATTTTCGAGGGGTTCAAAGAAGATGCAGTTGAGGTTCTTAAAATTGCAGTTCATTGCACATCAAGGACGCCAGCATTAAGACCTTCCATGAGGATGGTAGTTCATATGCTGGAAGAAGCCGAGCCTTGCAAGCTGACAGATGTAGTCGTGAATTCACCAAATGAGGATGGCAGGAAACAAGGACTTGCTAACTAATGGCAAGTCATGATGTTGAACTATATCTCGTTTTTGCAGAATATTGAATTATGTTGTAAGTTCACAAAGAATGCTTAGTGTACATATGACACTTTTGAAGAAATAGTGTATTTCACAGCTGCATTAATAAATCCAGCTAGCAA</genome_strand>
        <mrna_strand>GCATCACGGATATGACAGACCCGTGATGCATCGGGATGTCAAGTCTAGCAACATCTTGTTGGATGAACAGATGAAGCCCAAAATTGCTGATTTTGGACTAGCCAAAGTTTTGCATGTTAATGGTACTAAGGACTCTTCTCAGGTTGTAGCTGGGACGCATGGCTACATTGCTCCTG..................................................................................................AGTATGCTTACACAACCAAGGTGACCGAGAAGAGTGATGTCTATAGCTTCGGGGTGGTGCTAATGGAATTGGTGACTGGAAAGAAGCCAGTGGAGGCAGAATACGGGGAGAACATTGACATAGTCCAATGGGTTTGTAGCAAGATAAGAAACAATACTAGCATGATCGATTTGGTGGATTCAAGCATTTTCGAGGGGTTCAAAGAAGATGCAGTTGAGGTTCTTAAAATTGCAGTTCATTGCACATCAAGGACGCCAGCATTAAGACCTTCCATGAGGATGGTAGTTCATATGCTGGAAGAAGCCGAGCCTTGCAAGCTGACAGATGTAGTCGTGAATTCACCAAATGAGGATGGCAGGAAACAAGGACTTGCTAACTAATGGCAAGTCATGATGTTGAACTATATCTCGTTTTTGCAGAATATTGAATTATGTTGTAAGTTCACAAAGAATGCTTAGTGTACATATGACACTTTTGAAGAAATAGTGTATTTCACAGCTGCATTAATAAATCCAGCTAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303638" ref_strand="+" ref_description="SGN-E303638 [cLEY-6-C11](-)">
      <seq>atagtccaatgggtttgtagcaagataagaaacaatactagcatgatcgatttggtggattcaagcattttcgaggggttcaaagaagatgcagttgaggttcttaaaattgcagttcattgcacatcaaggacgccagcattaagaccttccatgaggatggtagttcatatgctggaagaagccgagccttgcaagctgacagatgtagtcgtgaattcaccaaatgaggatggcaggaaacaaggacttgctaactaatggcaagtcatgatgttgaactatatctcgtttttgcagaatattgaattatgttgtaagttcacaaagaatgcttagtgtacatatgacacttttgaagaaatagtgtatttcacagctgcattaataaatccagctagcaagtaatgtatttcacatccaaattactaatagaaactgagcagttgatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="+" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="151483" stop="152536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151783" g_stop="152245" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="+" ref_id="SGN-E303638" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151783" e_stop="152245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTCCAATGGGTTTGTAGCAAGATAAGAAACAATACTAGCATGATCGATTTGGTGGATTCAAGCATTTTCGAGGGGTTCAAAGAAGATGCAGTTGAGGTTCTTAAAATTGCAGTTCATTGCACATCAAGGACGCCAGCATTAAGACCTTCCATGAGGATGGTAGTTCATATGCTGGAAGAAGCCGAGCCTTGCAAGCTGACAGATGTAGTCGTGAATTCACCAAATGAGGATGGCAGGAAACAAGGACTTGCTAACTAATGGCAAGTCATGATGTTGAACTATATCTCGTTTTTGCAGAATATTGAATTATGTTGTAAGTTCACAAAGAATGCTTAGTGTACATATGACACTTTTGAAGAAATAGTGTATTTCACAGCTGCATTAATAAATCCAGCTAGCAAGTAATGTATTTCACATCCAAATTACTAATAGAAACTGAGCAGTTGATCTACCCTACAAC</genome_strand>
        <mrna_strand>ATAGTCCAATGGGTTTGTAGCAAGATAAGAAACAATACTAGCATGATCGATTTGGTGGATTCAAGCATTTTCGAGGGGTTCAAAGAAGATGCAGTTGAGGTTCTTAAAATTGCAGTTCATTGCACATCAAGGACGCCAGCATTAAGACCTTCCATGAGGATGGTAGTTCATATGCTGGAAGAAGCCGAGCCTTGCAAGCTGACAGATGTAGTCGTGAATTCACCAAATGAGGATGGCAGGAAACAAGGACTTGCTAACTAATGGCAAGTCATGATGTTGAACTATATCTCGTTTTTGCAGAATATTGAATTATGTTGTAAGTTCACAAAGAATGCTTAGTGTACATATGACACTTTTGAAGAAATAGTGTATTTCACAGCTGCATTAATAAATCCAGCTAGCAAGTAATGTATTTCACATCCAAATTACTAATAGAAACTGAGCAGTTGATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574137" ref_strand="+" ref_description="SGN-E574137 [33556]">
      <seq>ctaaaaatgagtcgtcaaaaaaagaaggagaagcttgtcaaacctcaagaaaagactaaaagcttcctagagccatggccaaatctccctcaacagctcctcgactttatgggaaggcaacatcctgatgaaaccaatcgtcttatgcaaaacatcagcttccttggtgttactaaatcatggagatcagtacctaagcaatgtagtaccaaaaatgcacaattaccctggcttgaaatttccgacaaagatcatttcttccggtccaagactcaagagcataccctcaacatcccatttcgactaggtgaatattggtggtacggtagaaggacatcatgggatattccttggacacattttcatggatgttcacacgggttgattgttgctggagggaaggatcctgcaatgtactgtctcttgattcctacttcaagattcacttatcggagtattcccacttgggatcccacaattccattcaagtttgcaactctgtcttcaaatccttataacaataacaaggcctgttttctgatggtgttaacaggatgttccactccagcctttgtggtttctcatcttggataccaaaataaatggatgaaagaagagaacaccttgccttgaccctaactggtcanaaaggaaactaatgcaatttactaatgccattcggtttgaaggtaagttctatgcattaagttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0071F18-BvszG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0071F18.1" temp_strand="-" temp_description="C01HBa0071F18.1  AC238512.2 htgs_phase:3 submitted_to_sgn_as:AC238512 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.">
        <position start="153973" stop="152663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="153673" g_stop="152963" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0071F18.1" gen_strand="-" ref_id="SGN-E574137" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0071F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="153673" e_stop="152963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAATGAGTCGTCAAAAAAAGAAGGAGAAGCTTGTCAAACCTCAAGAAAAGACTAAAAGCTTGCTAGAGCCATGGCCAAATCTCCCTCAACAGCTCCTCAACTTTATGGGAAGGCAACATCCTGATGAAACCAATCGTCTTATGCAGAACATCTGCTTCCCTGGTGTTACTAAATCATGGAGAGCAGTACCTAAGCAATGTAGTAACAAAAATGCACAATTACCCTGGCTTGAAATTTCCGACAAAGATCATTTCTTCCAGTCCAAGACTCAAGAGCATACCCTCACCATCCCATTTCGACTAGGTGAATATTGGTGGTACAGTAGAAGGTCATCTTGGGATGTTCCTTGGACACATTTTCATGGATGTTCACACGGGTTGATTGTCGCTGGAGGGAAGGATCCTGCAACGTACTGTCTCTTGATTCCTACTTCAAGATTCACTTATCGGAGTATTCCCACTTGGGATCCCACAATTCCATTCAAGTTTGCAACTCTGTCTTCAAATCCTTATAACAATAACAAGGCCTGTTTTTTGATGGTGTTAACAGGATGTTCCACTCCAGCCTTTGTGGTTTCCAATATTGGATACCAAAATAAATGGATGAAAGAAGAGAACACCTTG-CTTGACCCTAACTGTTCAAAAAGGGAACTAATGCAATTTACTAATGCCATCGGCTTTGAAGGTAAGTTCTATGCATTGAGCTTA</genome_strand>
        <mrna_strand>CTAAAAATGAGTCGTCAAAAAAAGAAGGAGAAGCTTGTCAAACCTCAAGAAAAGACTAAAAGCTTCCTAGAGCCATGGCCAAATCTCCCTCAACAGCTCCTCGACTTTATGGGAAGGCAACATCCTGATGAAACCAATCGTCTTATGCAAAACATCAGCTTCCTTGGTGTTACTAAATCATGGAGATCAGTACCTAAGCAATGTAGTACCAAAAATGCACAATTACCCTGGCTTGAAATTTCCGACAAAGATCATTTCTTCCGGTCCAAGACTCAAGAGCATACCCTCAACATCCCATTTCGACTAGGTGAATATTGGTGGTACGGTAGAAGGACATCATGGGATATTCCTTGGACACATTTTCATGGATGTTCACACGGGTTGATTGTTGCTGGAGGGAAGGATCCTGCAATGTACTGTCTCTTGATTCCTACTTCAAGATTCACTTATCGGAGTATTCCCACTTGGGATCCCACAATTCCATTCAAGTTTGCAACTCTGTCTTCAAATCCTTATAACAATAACAAGGCCTGTTTTCTGATGGTGTTAACAGGATGTTCCACTCCAGCCTTTGTGGTTTCTCATCTTGGATACCAAAATAAATGGATGAAAGAAGAGAACACCTTGCCTTGACCCTAACTGGTCANAAAGGAAACTAATGCAATTTACTAATGCCATTCGGTTTGAAGGTAAGTTCTATGCATTAAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>420</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5489" PGL_stop="2542"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5479" e_stop="3729"/>
            <exon e_start="3624" e_stop="3402"/>
            <exon e_start="3316" e_stop="2542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.965" e_score="0.999"/>
          <exon-intron don_prob="0.978" acc_prob="0.889" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="5479" e_stop="3729" e_length="1751"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3624" e_stop="3402" e_length="223"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.889">
            <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="3316" e_stop="2542" e_length="775"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5479" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="2542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5479" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="2542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5479" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="2597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5479" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="2597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5479" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="2888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5479" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="2888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5479" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="2896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5479" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="2896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5479" stop="4947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5479" stop="5036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5478" stop="4780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5476" stop="5071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5475" stop="4854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5470" stop="4866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5469" stop="4848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5469" stop="5034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5255" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="3258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5164" stop="4459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5157" stop="4579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5028" stop="4682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4975" stop="4388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4974" stop="4283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4974" stop="4425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4389" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="2888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4196" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="3107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4114" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="3309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4024" stop="3729"/>
              <exon start="3624" stop="3612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="3165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3600" stop="3402"/>
              <exon start="3316" stop="2898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3570" stop="3402"/>
              <exon start="3316" stop="2653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3507" stop="3402"/>
              <exon start="3316" stop="2907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3472" stop="3402"/>
              <exon start="3316" stop="2907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3472" stop="3402"/>
              <exon start="3316" stop="2915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3425" stop="3402"/>
              <exon start="3316" stop="2915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3411" stop="3402"/>
              <exon start="3316" stop="2894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3313" stop="2894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3312" stop="2894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3305" stop="2906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3294" stop="2904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3275" stop="2897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3171" stop="2907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGG : CCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG : ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTTCTTTGGTTTCAAGCTCCATCAACTTAAAACATATTGTTTGTGGTACATTGTGTTGGTCGGTTGACCAGCCACTAATTGTGCCAACAGCTTTGAGAAAAAAGAAATGTGGCAAATATGTTAAAAGTTGCTGGCTTAACCATGTTCTAATCGACCCTAAAATGATTGGGAATAGTTTATTTTGGCCTGAGAGCAGAATGAAGATTTAAGAAAGCATTCAACGTGTTTGAAGAGAATGGTGTATGCGAACAATTATTTTCATATATTTAAATTCTTAGGTACTTGTATTATTTAATGGGTAGCTGTGCAGTTACAGTATTACTTAAACAAGTGCTGGTAGAAACTTTCT</gDNA_template>
            <first_frame> L  Q  T  L  A  F  I  W  V  P  T  F  I  E  F  S  F  Y  F  L  L  W  L  I  K  T  G  N  *  R  S  G  G  V  S  V  D  S  G  R  R  V  A  V  T  Y  L  F  N  F  M  I  S  T  P  F  D  N  D  K  F  H  Q  T  N  A  G  I  K  I  C  R  C  N  S  W  H  P  P  S  *  L  A  G  M  N  L  A  G  L  S  L  V  V  Q  V  V  D  S  W  G  K  P  L  I  L  I  R  N  *  T  L  I  T  T  L  T  L  R  R  S  R  S  N  S  I  T  P  L  M  V  G  I  W  M  I  R  Q  Q  *  R  K  R  R  L  M  M  P  T  R  S  I  N  G  R  L  N  Q  R  P  T  L  T  A  *  I  S  E  D  I  *  L  L  T  S  S  L  T  T  K  P  R  S  M  S  Y  G  V  G  *  W  R  R  S  N  R  S  E  T  S  R  I  E  S  N  P  V  N  *  A  P  P  T  P  D  L  K  A  N  R  R  N  N  L  E  I  N  G  L  P  L  P  D  P  V  R  I  *  R  S  S  Q  T  E  L  K  I  G  I  L  V  I  Q  V  V  W  M  V  *  R  P  S  E  R  K  V  *  *  R  N  V  G  R  F  W  Q  S  *  *  S  T  K  M  G  G  F  S  I  S  L  L  M  L  K  P  W  V  F  M  I  T  T  K  L  L  S  D  P  W  I  W  G  R  L  N  Q  I  W  L  R  I  F  T  L  P  L  L  N  L  L  L  M  L  G  L  L  S  I  M  P  C  C  I  T  L  K  Q  I  K  L  M  A  S  L  S  S  F  S  D  D  L  R  T  C  L  D  R  S  R  I  K  *  I  S  L  K  A  A  G  G  I  I  T  L  *  M  S  C  R  G  V  L  G  I  T  Y  L  L  P  R  E  *  R  N  P  N  L  P  Q  S  L  T  F  Q  R  S  K  S  G  C  K  I  I  L  V  R  Q  H  P  L  C  Q  C  H  H  P  I  H  Q  P  D  S  S  H  H  C  Q  L  R  P  Q  *  G  H  Q  L  R  S  L  N  Q  L  L  K  F  L  L  W  E  S  N  L  N  R  G  P  R  I  Q  I  K  E  R  *  I  W  R  K  S  I  N  *  E  L  G  C  K  V  C  H  K  R  R  C  R  S  W  C  R  L  *  G  R  G  M  N  I  *  P  K  T  V  M  R  L  S  S  T  L  R  P  L  T  P  R  L  Y  G  S  L  I  G  L  *  P  I  G  R  R  W  *  A  K  P  R  G  K  P  *  *  T  I  W  D  H  H  P  P  V  L  Q  L  Q  L  Q  L  H  P  L  P  K  Q  M  G :   L  L  L  V  R  K  T  I  P  S  K  R  P  R  R  V  M  L  V  K  R  M  *  R  *  R  M  M  N  Q  L  P  I  F  L  P  *  K  L  R  R  M  K  V  V  G  G  I  K  R  M  V  V  V  V  V  V  V  A  L  V  V  L  V  A  Q  A  V  A  P  P  L  L  V  :  I  L  I  Q  E  V  H  P  E  V  T  L  M  L  M  M  H  T  L  E  I  C  *  F  K  Q  C  I  G  C  C  *  I  F  F  Y  R  G  I  K  L  G  T  R  I  L  I  S  W  G  K  P  A  V  C  K  H  M  G  N  L  G  R  K  I  D  L  L  I  *  H  R  Q  N  Q  K  A  Q  G  T  L  *  C  *  W  Q  R  S  Y  G  V  R  D  H  N  F  R  N  F  R  D  G  P  S  V  N  E  S  E  I  C  R  *  I  V  E  E  K  T  P  F  V  Q  L  V  Y  T  K  Y  L  I  F  L  E  D  D  N  T  *  H  F  L  L  L  W  F  Q  A  P  S  T  *  N  I  L  F  V  V  H  C  V  G  R  L  T  S  H  *  L  C  Q  Q  L  *  E  K  R  N  V  A  N  M  L  K  V  A  G  L  T  M  F  *  S  T  L  K  *  L  G  I  V  Y  F  G  L  R  A  E  *  R  F  K  K  A  F  N  V  F  E  E  N  G  V  C  E  Q  L  F  S  Y  I  *  I  L  R  Y  L  Y  Y  L  M  G  S  C  A  V  T  V  L  L  K  Q  V  L  V  E  T  F  </first_frame>
            <second_frame>  F  K  P  L  P  S  F  G  F  Q  H  L  *  S  F  L  F  T  S  F  F  G  *  L  K  P  E  I  E  G  R  V  E  F  R  *  I  P  A  G  A  *  L  S  R  T  S  L  I  S  *  F  Q  H  H  L  I  T  I  N  S  T  R  R  T  P  V  L  R  F  A  G  V  I  H  G  I  R  R  L  S  *  P  E  *  I  *  L  G  S  V  W  W  C  R  W  W  I  H  G  E  N  P  L  F  S  Y  A  T  E  P  *  S  Q  P  *  P  *  E  E  A  E  A  I  P  S  H  L  *  W  S  A  Y  G  *  F  A  S  S  D  A  N  G  V  *  *  C  L  L  V  Q  S  T  A  D  *  I  N  D  Q  R  *  R  P  E  F  R  R  I  F  D  F  *  R  R  L  L  Q  Q  S  R  G  Q  *  A  T  E  S  A  D  G  G  G  R  T  D  P  K  P  Q  G  S  N  R  I  R  S  I  E  H  H  Q  P  Q  I  S  R  Q  I  E  E  T  I  W  K  *  T  A  Y  P  F  R  I  Q  *  G  S  E  E  A  P  K  R  S  *  K  *  E  F  W  *  S  R  W  C  G  W  C  E  G  H  R  N  G  K  Y  D  E  G  M  *  A  D  F  G  K  A  D  E  A  Q  K  W  V  D  F  Q  Y  P  C  *  C  *  S  L  G  S  S  *  L  P  P  N  Y  *  A  T  H  G  F  G  D  G  *  I  K  F  G  *  E  F  L  P  F  P  F  *  I  C  C  *  C  *  A  Y  F  Q  *  C  L  V  V  *  P  *  N  R  S  S  *  W  L  R  *  A  A  S  R  T  I  *  G  H  V  *  T  A  P  G  *  N  E  *  A  *  R  R  Q  A  G  L  S  P  C  R  *  V  A  G  E  F  L  E  S  H  T  Y  S  R  E  S  E  E  T  Q  T  Y  P  S  P  *  H  F  K  E  A  R  A  D  A  K  S  F  *  C  V  N  T  L  F  A  S  A  T  T  Q  S  T  S  P  T  A  V  T  I  V  N  S  V  P  S  E  G  T  S  C  E  A  S  I  S  C  *  S  S  Y  Y  G  K  A  T  *  T  E  G  Q  G  S  K  *  K  R  D  E  Y  G  G  K  A  *  I  R  S  W  V  A  K  F  A  T  R  E  D  A  A  V  G  A  D  Y  K  E  E  E  *  T  F  S  P  R  R  *  *  D  *  A  R  H  *  G  P  *  H  R  D  S  M  G  A  *  S  V  C  D  Q  L  E  E  D  G  E  Q  N  Q  E  A  S  L  D  E  Q  F  G  T  T  I  R  Q  C  C  S  F  S  C  N  Y  I  R  C  R  S  R  W   : A  Y  Y  *  *  E  K  R  F  L  Q  K  G  Q  E  G  *  C  W  *  R  G  C  R  D  R  G  *  *  T  S  Y  P  F  S  S  R  R  N  *  E  G  *  R  W  W  A  G  S  R  E  W  W  W  W  W  *  *  *  L  *  *  F  *  *  L  K  Q  W  L  L  L  F  *  * :   F  *  F  R  K  F  I  R  K  *  L  *  C  *  *  C  T  L  L  R  F  V  D  S  S  S  A  *  A  V  A  E  F  S  F  I  E  V  *  S  W  G  L  E  F  *  *  V  G  E  N  Q  L  F  V  N  T  W  A  T  *  E  E  K  L  I  C  L  Y  D  I  G  K  I  K  K  L  R  E  L  C  S  V  D  G  R  E  V  M  A  L  G  I  T  I  L  G  I  L  E  M  V  P  L  L  M  R  V  R  Y  V  D  R  *  L  R  R  R  H  L  L  Y  S  W  F  T  L  N  I  *  F  F  L  K  M  I  T  H  D  T  F  Y  F  F  G  F  K  L  H  Q  L  K  T  Y  C  L  W  Y  I  V  L  V  G  *  P  A  T  N  C  A  N  S  F  E  K  K  E  M  W  Q  I  C  *  K  L  L  A  *  P  C  S  N  R  P  *  N  D  W  E  *  F  I  L  A  *  E  Q  N  E  D  L  R  K  H  S  T  C  L  K  R  M  V  Y  A  N  N  Y  F  H  I  F  K  F  L  G  T  C  I  I  *  W  V  A  V  Q  L  Q  Y  Y  L  N  K  C  W  *  K  L  S </second_frame>
            <third_frame>   S  N  P  C  L  H  L  G  S  N  I  Y  R  V  F  F  L  L  P  S  L  V  D  *  N  R  K  L  K  V  G  W  S  F  G  R  F  R  Q  A  R  S  C  H  V  P  L  *  F  H  D  F  N  T  I  *  *  R  *  I  P  P  D  E  R  R  Y  *  D  L  P  V  *  F  M  A  S  A  V  L  A  S  R  N  E  S  S  W  A  Q  S  G  G  A  G  G  G  F  M  G  K  T  P  Y  S  H  T  Q  L  N  P  N  H  N  P  N  P  K  K  K  Q  K  Q  F  H  H  T  S  N  G  R  H  M  D  D  S  P  A  V  T  Q  T  A  S  D  D  A  Y  S  F  N  Q  R  P  I  E  S  T  T  N  V  D  G  L  N  F  G  G  Y  L  T  F  N  V  V  S  Y  N  K  A  E  V  N  E  L  R  S  R  L  M  A  E  V  E  Q  I  R  N  L  K  D  R  I  E  S  G  Q  L  S  T  T  N  P  R  S  Q  G  K  S  K  K  Q  S  G  N  K  R  P  T  P  S  G  S  S  K  D  L  K  K  L  P  N  G  V  E  N  R  N  F  G  N  P  G  G  V  D  G  V  K  A  I  G  T  E  S  M  M  K  E  C  R  Q  I  L  A  K  L  M  K  H  K  N  G  W  I  F  N  I  P  V  D  A  E  A  L  G  L  H  D  Y  H  Q  I  I  K  R  P  M  D  L  G  T  V  K  S  N  L  A  K  N  F  Y  P  S  P  F  E  F  A  A  D  V  R  L  T  F  N  N  A  L  L  Y  N  P  K  T  D  Q  V  N  G  F  A  E  Q  L  L  G  R  F  E  D  M  F  R  P  L  Q  D  K  M  N  K  L  E  G  G  R  R  D  Y  H  P  V  D  E  L  Q  G  S  S  W  N  H  I  P  T  P  E  R  V  K  K  P  K  P  T  P  V  P  N  I  S  K  K  Q  E  R  M  Q  N  H  S  S  A  S  T  P  S  L  P  V  P  P  P  N  P  P  A  R  Q  Q  S  P  L  S  T  P  S  P  V  R  A  P  A  A  K  P  Q  S  A  A  K  V  P  T  M  G  K  Q  P  K  P  R  A  K  D  P  N  K  R  E  M  N  M  E  E  K  H  K  L  G  V  G  L  Q  S  L  P  Q  E  K  M  P  Q  L  V  Q  I  I  R  K  R  N  E  H  L  A  Q  D  G  D  E  I  E  L  D  I  E  A  L  D  T  E  T  L  W  E  L  D  R  F  V  T  N  W  K  K  M  V  S  K  T  K  R  Q  A  L  M  N  N  L  G  P  P  S  A  S  A  A  A  S  A  A  T  T  S  V  A  E  A  D  G  :  P  T  T  S  E  K  N  D  S  F  K  K  A  K  K  G  D  V  G  E  E  D  V  E  I  E  D  D  E  P  A  T  H  F  P  P  V  E  I  E  K  D  E  G  G  G  R  D  Q  E  N  G  G  G  G  G  S  S  S  S  S  S  S  S  S  S  S  S  G  S  S  S  S  S   : D  S  D  S  G  S  S  S  G  S  D  S  D  A  D  D  A  H  S  *  D  L  L  I  Q  A  V  H  R  L  L  L  N  F  L  L  S  R  Y  K  V  G  D  S  N  S  D  K  L  G  K  T  S  C  L  *  T  H  G  Q  P  R  K  K  N  *  S  A  Y  M  T  *  A  K  S  K  S  S  G  N  F  V  V  L  M  A  E  K  L  W  R  *  G  S  Q  F  *  E  F  *  R  W  S  L  C  *  *  E  *  D  M  *  I  D  S  *  G  E  D  T  F  C  T  V  G  L  H  *  I  F  D  F  S  *  R  *  *  H  M  T  L  S  T  S  L  V  S  S  S  I  N  L  K  H  I  V  C  G  T  L  C  W  S  V  D  Q  P  L  I  V  P  T  A  L  R  K  K  K  C  G  K  Y  V  K  S  C  W  L  N  H  V  L  I  D  P  K  M  I  G  N  S  L  F  W  P  E  S  R  M  K  I  *  E  S  I  Q  R  V  *  R  E  W  C  M  R  T  I  I  F  I  Y  L  N  S  *  V  L  V  L  F  N  G  *  L  C  S  Y  S  I  T  *  T  S  A  G  R  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5258" stop="3729"/>
                    <exon start="3624" stop="3402"/>
                    <exon start="3316" stop="3258"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1809</number_coding_nucleotides>
                  <number_encoded_amino_acids>603</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMASAVLASRNESSWAQSGGAGGGFMGKTPYSHTQLNPNHNPNPKKKQKQFHHTSNGRHMDDSPAVTQTASDDAYSFNQRPIESTTNVDGLNFGGYLTFNVVSYNKAEVNELRSRLMAEVEQIRNLKDRIESGQLSTTNPRSQGKSKKQSGNKRPTPSGSSKDLKKLPNGVENRNFGNPGGVDGVKAIGTESMMKECRQILAKLMKHKNGWIFNIPVDAEALGLHDYHQIIKRPMDLGTVKSNLAKNFYPSPFEFAADVRLTFNNALLYNPKTDQVNGFAEQLLGRFEDMFRPLQDKMNKLEGGRRDYHPVDELQGSSWNHIPTPERVKKPKPTPVPNISKKQERMQNHSSASTPSLPVPPPNPPARQQSPLSTPSPVRAPAAKPQSAAKVPTMGKQPKPRAKDPNKREMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALMNNLGPPSASAAASAATTSVAEADGPTTSEKNDSFKKAKKGDVGEEDVEIEDDEPATHFPPVEIEKDEGGGRDQENGGGGGSSSSSSSSSSSSGSSSSSDSDSGSSSGSDSDADDAHS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2906" stop="2682"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMTLSTSLVSSSINLKHIVCGTLCWSVDQPLIVPTALRKKKCGKYVKSCWLNHVLIDPKMIGNSLFWPESRMKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5464" e_stop="5265"/>
            <exon e_start="5194" e_stop="3729"/>
            <exon e_start="3624" e_stop="3402"/>
            <exon e_start="3316" e_stop="2653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.980"/>
          <exon-intron don_prob="1.000" acc_prob="0.965" e_score="0.999"/>
          <exon-intron don_prob="0.978" acc_prob="0.889" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="5464" e_stop="5265" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5264" i_stop="5195" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="5194" e_stop="3729" e_length="1466"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3624" e_stop="3402" e_length="223"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.889">
            <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="3316" e_stop="2653" e_length="664"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5464" stop="5265"/>
              <exon start="5194" stop="4836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5164" stop="4459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5157" stop="4579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5028" stop="4682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4975" stop="4388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4974" stop="4283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4974" stop="4425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4389" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="2888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4196" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="3107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4114" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="3309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4024" stop="3729"/>
              <exon start="3624" stop="3612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="3165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3600" stop="3402"/>
              <exon start="3316" stop="2898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3570" stop="3402"/>
              <exon start="3316" stop="2653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3507" stop="3402"/>
              <exon start="3316" stop="2907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3472" stop="3402"/>
              <exon start="3316" stop="2907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3472" stop="3402"/>
              <exon start="3316" stop="2915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3425" stop="3402"/>
              <exon start="3316" stop="2915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3411" stop="3402"/>
              <exon start="3316" stop="2894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3313" stop="2894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3312" stop="2894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3305" stop="2906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3294" stop="2904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3275" stop="2897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3171" stop="2907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCG : GTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGG : CCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG : ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTTCTTTGGTTTCAAGCTCCATCAACTTAAAACATATTGTTTGTGGTACATTGTGTTGGTCGGTTGACCAGCCACTAATTGTGCCAACAGCTTTGAGAAAAAAGAAATGTGGCAAATATGTTAAAAGTTGCTGGCTTAACCATGTTCTAATCGACCCTAAAATGATTGGGAATAGTTTATTTTGGCCTGAGAGCAGAATGAAGATTTAAGAAAGCATTCAACGTGTTTGAAGAGAATG</gDNA_template>
            <first_frame> F  I  W  V  P  T  F  I  E  F  S  F  Y  F  L  L  W  L  I  K  T  G  N  *  R  S  G  G  V  S  V  D  S  G  R  R  V  A  V  T  Y  L  F  N  F  M  I  S  T  P  F  D  N  D  K  F  H  Q  T  N  A  G  I  K  I  C  R :   W  W  I  H  G  E  N  P  L  F  S  Y  A  T  E  P  *  S  Q  P  *  P  *  E  E  A  E  A  I  P  S  H  L  *  W  S  A  Y  G  *  F  A  S  S  D  A  N  G  V  *  *  C  L  L  V  Q  S  T  A  D  *  I  N  D  Q  R  *  R  P  E  F  R  R  I  F  D  F  *  R  R  L  L  Q  Q  S  R  G  Q  *  A  T  E  S  A  D  G  G  G  R  T  D  P  K  P  Q  G  S  N  R  I  R  S  I  E  H  H  Q  P  Q  I  S  R  Q  I  E  E  T  I  W  K  *  T  A  Y  P  F  R  I  Q  *  G  S  E  E  A  P  K  R  S  *  K  *  E  F  W  *  S  R  W  C  G  W  C  E  G  H  R  N  G  K  Y  D  E  G  M  *  A  D  F  G  K  A  D  E  A  Q  K  W  V  D  F  Q  Y  P  C  *  C  *  S  L  G  S  S  *  L  P  P  N  Y  *  A  T  H  G  F  G  D  G  *  I  K  F  G  *  E  F  L  P  F  P  F  *  I  C  C  *  C  *  A  Y  F  Q  *  C  L  V  V  *  P  *  N  R  S  S  *  W  L  R  *  A  A  S  R  T  I  *  G  H  V  *  T  A  P  G  *  N  E  *  A  *  R  R  Q  A  G  L  S  P  C  R  *  V  A  G  E  F  L  E  S  H  T  Y  S  R  E  S  E  E  T  Q  T  Y  P  S  P  *  H  F  K  E  A  R  A  D  A  K  S  F  *  C  V  N  T  L  F  A  S  A  T  T  Q  S  T  S  P  T  A  V  T  I  V  N  S  V  P  S  E  G  T  S  C  E  A  S  I  S  C  *  S  S  Y  Y  G  K  A  T  *  T  E  G  Q  G  S  K  *  K  R  D  E  Y  G  G  K  A  *  I  R  S  W  V  A  K  F  A  T  R  E  D  A  A  V  G  A  D  Y  K  E  E  E  *  T  F  S  P  R  R  *  *  D  *  A  R  H  *  G  P  *  H  R  D  S  M  G  A  *  S  V  C  D  Q  L  E  E  D  G  E  Q  N  Q  E  A  S  L  D  E  Q  F  G  T  T  I  R  Q  C  C  S  F  S  C  N  Y  I  R  C  R  S  R  W   : A  Y  Y  *  *  E  K  R  F  L  Q  K  G  Q  E  G  *  C  W  *  R  G  C  R  D  R  G  *  *  T  S  Y  P  F  S  S  R  R  N  *  E  G  *  R  W  W  A  G  S  R  E  W  W  W  W  W  *  *  *  L  *  *  F  *  *  L  K  Q  W  L  L  L  F  *  * :   F  *  F  R  K  F  I  R  K  *  L  *  C  *  *  C  T  L  L  R  F  V  D  S  S  S  A  *  A  V  A  E  F  S  F  I  E  V  *  S  W  G  L  E  F  *  *  V  G  E  N  Q  L  F  V  N  T  W  A  T  *  E  E  K  L  I  C  L  Y  D  I  G  K  I  K  K  L  R  E  L  C  S  V  D  G  R  E  V  M  A  L  G  I  T  I  L  G  I  L  E  M  V  P  L  L  M  R  V  R  Y  V  D  R  *  L  R  R  R  H  L  L  Y  S  W  F  T  L  N  I  *  F  F  L  K  M  I  T  H  D  T  F  Y  F  F  G  F  K  L  H  Q  L  K  T  Y  C  L  W  Y  I  V  L  V  G  *  P  A  T  N  C  A  N  S  F  E  K  K  E  M  W  Q  I  C  *  K  L  L  A  *  P  C  S  N  R  P  *  N  D  W  E  *  F  I  L  A  *  E  Q  N  E  D  L  R  K  H  S  T  C  L  K  R  M </first_frame>
            <second_frame>  S  F  G  F  Q  H  L  *  S  F  L  F  T  S  F  F  G  *  L  K  P  E  I  E  G  R  V  E  F  R  *  I  P  A  G  A  *  L  S  R  T  S  L  I  S  *  F  Q  H  H  L  I  T  I  N  S  T  R  R  T  P  V  L  R  F  A   : G  G  G  F  M  G  K  T  P  Y  S  H  T  Q  L  N  P  N  H  N  P  N  P  K  K  K  Q  K  Q  F  H  H  T  S  N  G  R  H  M  D  D  S  P  A  V  T  Q  T  A  S  D  D  A  Y  S  F  N  Q  R  P  I  E  S  T  T  N  V  D  G  L  N  F  G  G  Y  L  T  F  N  V  V  S  Y  N  K  A  E  V  N  E  L  R  S  R  L  M  A  E  V  E  Q  I  R  N  L  K  D  R  I  E  S  G  Q  L  S  T  T  N  P  R  S  Q  G  K  S  K  K  Q  S  G  N  K  R  P  T  P  S  G  S  S  K  D  L  K  K  L  P  N  G  V  E  N  R  N  F  G  N  P  G  G  V  D  G  V  K  A  I  G  T  E  S  M  M  K  E  C  R  Q  I  L  A  K  L  M  K  H  K  N  G  W  I  F  N  I  P  V  D  A  E  A  L  G  L  H  D  Y  H  Q  I  I  K  R  P  M  D  L  G  T  V  K  S  N  L  A  K  N  F  Y  P  S  P  F  E  F  A  A  D  V  R  L  T  F  N  N  A  L  L  Y  N  P  K  T  D  Q  V  N  G  F  A  E  Q  L  L  G  R  F  E  D  M  F  R  P  L  Q  D  K  M  N  K  L  E  G  G  R  R  D  Y  H  P  V  D  E  L  Q  G  S  S  W  N  H  I  P  T  P  E  R  V  K  K  P  K  P  T  P  V  P  N  I  S  K  K  Q  E  R  M  Q  N  H  S  S  A  S  T  P  S  L  P  V  P  P  P  N  P  P  A  R  Q  Q  S  P  L  S  T  P  S  P  V  R  A  P  A  A  K  P  Q  S  A  A  K  V  P  T  M  G  K  Q  P  K  P  R  A  K  D  P  N  K  R  E  M  N  M  E  E  K  H  K  L  G  V  G  L  Q  S  L  P  Q  E  K  M  P  Q  L  V  Q  I  I  R  K  R  N  E  H  L  A  Q  D  G  D  E  I  E  L  D  I  E  A  L  D  T  E  T  L  W  E  L  D  R  F  V  T  N  W  K  K  M  V  S  K  T  K  R  Q  A  L  M  N  N  L  G  P  P  S  A  S  A  A  A  S  A  A  T  T  S  V  A  E  A  D  G  :  P  T  T  S  E  K  N  D  S  F  K  K  A  K  K  G  D  V  G  E  E  D  V  E  I  E  D  D  E  P  A  T  H  F  P  P  V  E  I  E  K  D  E  G  G  G  R  D  Q  E  N  G  G  G  G  G  S  S  S  S  S  S  S  S  S  S  S  S  G  S  S  S  S  S   : D  S  D  S  G  S  S  S  G  S  D  S  D  A  D  D  A  H  S  *  D  L  L  I  Q  A  V  H  R  L  L  L  N  F  L  L  S  R  Y  K  V  G  D  S  N  S  D  K  L  G  K  T  S  C  L  *  T  H  G  Q  P  R  K  K  N  *  S  A  Y  M  T  *  A  K  S  K  S  S  G  N  F  V  V  L  M  A  E  K  L  W  R  *  G  S  Q  F  *  E  F  *  R  W  S  L  C  *  *  E  *  D  M  *  I  D  S  *  G  E  D  T  F  C  T  V  G  L  H  *  I  F  D  F  S  *  R  *  *  H  M  T  L  S  T  S  L  V  S  S  S  I  N  L  K  H  I  V  C  G  T  L  C  W  S  V  D  Q  P  L  I  V  P  T  A  L  R  K  K  K  C  G  K  Y  V  K  S  C  W  L  N  H  V  L  I  D  P  K  M  I  G  N  S  L  F  W  P  E  S  R  M  K  I  *  E  S  I  Q  R  V  *  R  E   </second_frame>
            <third_frame>   H  L  G  S  N  I  Y  R  V  F  F  L  L  P  S  L  V  D  *  N  R  K  L  K  V  G  W  S  F  G  R  F  R  Q  A  R  S  C  H  V  P  L  *  F  H  D  F  N  T  I  *  *  R  *  I  P  P  D  E  R  R  Y  *  D  L  P  :  V  V  D  S  W  G  K  P  L  I  L  I  R  N  *  T  L  I  T  T  L  T  L  R  R  S  R  S  N  S  I  T  P  L  M  V  G  I  W  M  I  R  Q  Q  *  R  K  R  R  L  M  M  P  T  R  S  I  N  G  R  L  N  Q  R  P  T  L  T  A  *  I  S  E  D  I  *  L  L  T  S  S  L  T  T  K  P  R  S  M  S  Y  G  V  G  *  W  R  R  S  N  R  S  E  T  S  R  I  E  S  N  P  V  N  *  A  P  P  T  P  D  L  K  A  N  R  R  N  N  L  E  I  N  G  L  P  L  P  D  P  V  R  I  *  R  S  S  Q  T  E  L  K  I  G  I  L  V  I  Q  V  V  W  M  V  *  R  P  S  E  R  K  V  *  *  R  N  V  G  R  F  W  Q  S  *  *  S  T  K  M  G  G  F  S  I  S  L  L  M  L  K  P  W  V  F  M  I  T  T  K  L  L  S  D  P  W  I  W  G  R  L  N  Q  I  W  L  R  I  F  T  L  P  L  L  N  L  L  L  M  L  G  L  L  S  I  M  P  C  C  I  T  L  K  Q  I  K  L  M  A  S  L  S  S  F  S  D  D  L  R  T  C  L  D  R  S  R  I  K  *  I  S  L  K  A  A  G  G  I  I  T  L  *  M  S  C  R  G  V  L  G  I  T  Y  L  L  P  R  E  *  R  N  P  N  L  P  Q  S  L  T  F  Q  R  S  K  S  G  C  K  I  I  L  V  R  Q  H  P  L  C  Q  C  H  H  P  I  H  Q  P  D  S  S  H  H  C  Q  L  R  P  Q  *  G  H  Q  L  R  S  L  N  Q  L  L  K  F  L  L  W  E  S  N  L  N  R  G  P  R  I  Q  I  K  E  R  *  I  W  R  K  S  I  N  *  E  L  G  C  K  V  C  H  K  R  R  C  R  S  W  C  R  L  *  G  R  G  M  N  I  *  P  K  T  V  M  R  L  S  S  T  L  R  P  L  T  P  R  L  Y  G  S  L  I  G  L  *  P  I  G  R  R  W  *  A  K  P  R  G  K  P  *  *  T  I  W  D  H  H  P  P  V  L  Q  L  Q  L  Q  L  H  P  L  P  K  Q  M  G :   L  L  L  V  R  K  T  I  P  S  K  R  P  R  R  V  M  L  V  K  R  M  *  R  *  R  M  M  N  Q  L  P  I  F  L  P  *  K  L  R  R  M  K  V  V  G  G  I  K  R  M  V  V  V  V  V  V  V  A  L  V  V  L  V  A  Q  A  V  A  P  P  L  L  V  :  I  L  I  Q  E  V  H  P  E  V  T  L  M  L  M  M  H  T  L  E  I  C  *  F  K  Q  C  I  G  C  C  *  I  F  F  Y  R  G  I  K  L  G  T  R  I  L  I  S  W  G  K  P  A  V  C  K  H  M  G  N  L  G  R  K  I  D  L  L  I  *  H  R  Q  N  Q  K  A  Q  G  T  L  *  C  *  W  Q  R  S  Y  G  V  R  D  H  N  F  R  N  F  R  D  G  P  S  V  N  E  S  E  I  C  R  *  I  V  E  E  K  T  P  F  V  Q  L  V  Y  T  K  Y  L  I  F  L  E  D  D  N  T  *  H  F  L  L  L  W  F  Q  A  P  S  T  *  N  I  L  F  V  V  H  C  V  G  R  L  T  S  H  *  L  C  Q  Q  L  *  E  K  R  N  V  A  N  M  L  K  V  A  G  L  T  M  F  *  S  T  L  K  *  L  G  I  V  Y  F  G  L  R  A  E  *  R  F  K  K  A  F  N  V  F  E  E  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5325" stop="5265"/>
                    <exon start="5194" stop="3729"/>
                    <exon start="3624" stop="3402"/>
                    <exon start="3316" stop="3258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1806</number_coding_nucleotides>
                  <number_encoded_amino_acids>602</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQHHLITINSTRRTPVLRFAGGGFMGKTPYSHTQLNPNHNPNPKKKQKQFHHTSNGRHMDDSPAVTQTASDDAYSFNQRPIESTTNVDGLNFGGYLTFNVVSYNKAEVNELRSRLMAEVEQIRNLKDRIESGQLSTTNPRSQGKSKKQSGNKRPTPSGSSKDLKKLPNGVENRNFGNPGGVDGVKAIGTESMMKECRQILAKLMKHKNGWIFNIPVDAEALGLHDYHQIIKRPMDLGTVKSNLAKNFYPSPFEFAADVRLTFNNALLYNPKTDQVNGFAEQLLGRFEDMFRPLQDKMNKLEGGRRDYHPVDELQGSSWNHIPTPERVKKPKPTPVPNISKKQERMQNHSSASTPSLPVPPPNPPARQQSPLSTPSPVRAPAAKPQSAAKVPTMGKQPKPRAKDPNKREMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALMNNLGPPSASAAASAATTSVAEADGPTTSEKNDSFKKAKKGDVGEEDVEIEDDEPATHFPPVEIEKDEGGGRDQENGGGGGSSSSSSSSSSSSGSSSSSDSDSGSSSGSDSDADDAHS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2906" stop="2682"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMTLSTSLVSSSINLKHIVCGTLCWSVDQPLIVPTALRKKKCGKYVKSCWLNHVLIDPKMIGNSLFWPESRMKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="5489" e_stop="2894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="5489" e_stop="2894" e_length="2596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5489" stop="2896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5479" stop="4947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5479" stop="5036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5478" stop="4780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5476" stop="5071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5475" stop="4854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5470" stop="4866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5469" stop="4848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5469" stop="5034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5164" stop="4459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5157" stop="4579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5028" stop="4682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4975" stop="4388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4974" stop="4283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4974" stop="4425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3313" stop="2894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3312" stop="2894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3305" stop="2906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3294" stop="2904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3275" stop="2897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3171" stop="2907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCTCAATCCCTTCAAACCCTTGCCTTCATTTGGGTTCCAACATTTATAGAGTTTTCTTTTTACTTCCTTCTTTGGTTGATTAAAACCGGAAATTGAAGGTCGGGTGGAGTTTCGGTAGATTCCGGCAGGCGCGTAGCTGTCACGTACCTCTTTAATTTCATGATTTCAACACCATTTGATAACGATAAATTCCACCAGACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAAGCAGAAGCAATTCCATCACACCTCTAATGGTCGGCATATGGATGATTCGCCAGCAGTGACGCAAACGGCGTCTGATGATGCCTACTCGTTCAATCAACGGCCGATTGAATCAACGACCAACGTTGACGGCCTGAATTTCGGAGGATATTTGACTTTTAACGTCGTCTCTTACAACAAAGCCGAGGTCAATGAGCTACGGAGTCGGCTGATGGCGGAGGTCGAACAGATCCGAAACCTCAAGGATCGAATCGAATCCGGTCAATTGAGCACCACCAACCCCAGATCTCAAGGCAAATCGAAGAAACAATCTGGAAATAAACGGCCTACCCCTTCCGGATCCAGTAAGGATCTGAAGAAGCTCCCAAACGGAGTTGAAAATAGGAATTTTGGTAATCCAGGTGGTGTGGATGGTGTGAAGGCCATCGGAACGGAAAGTATGATGAAGGAATGTAGGCAGATTTTGGCAAAGCTGATGAAGCACAAAAATGGGTGGATTTTCAATATCCCTGTTGATGCTGAAGCCTTGGGTCTTCATGATTACCACCAAATTATTAAGCGACCCATGGATTTGGGGACGGTTAAATCAAATTTGGCTAAGAATTTTTACCCTTCCCCTTTTGAATTTGCTGCTGATGTTAGGCTTACTTTCAATAATGCCTTGTTGTATAACCCTAAAACAGATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGGGTAATGCTATATTGCATTTATCTTGAATCTATTTGATGAGCACATTCTGTGCTCCTGTGCTTTTCTCTGATTGGAAGTTCTAACAAATGCGTTTTCTTTTGCAGCCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTT</gDNA_template>
            <first_frame> R  S  I  P  S  N  P  C  L  H  L  G  S  N  I  Y  R  V  F  F  L  L  P  S  L  V  D  *  N  R  K  L  K  V  G  W  S  F  G  R  F  R  Q  A  R  S  C  H  V  P  L  *  F  H  D  F  N  T  I  *  *  R  *  I  P  P  D  E  R  R  Y  *  D  L  P  V  *  F  M  A  S  A  V  L  A  S  R  N  E  S  S  W  A  Q  S  G  G  A  G  G  G  F  M  G  K  T  P  Y  S  H  T  Q  L  N  P  N  H  N  P  N  P  K  K  K  Q  K  Q  F  H  H  T  S  N  G  R  H  M  D  D  S  P  A  V  T  Q  T  A  S  D  D  A  Y  S  F  N  Q  R  P  I  E  S  T  T  N  V  D  G  L  N  F  G  G  Y  L  T  F  N  V  V  S  Y  N  K  A  E  V  N  E  L  R  S  R  L  M  A  E  V  E  Q  I  R  N  L  K  D  R  I  E  S  G  Q  L  S  T  T  N  P  R  S  Q  G  K  S  K  K  Q  S  G  N  K  R  P  T  P  S  G  S  S  K  D  L  K  K  L  P  N  G  V  E  N  R  N  F  G  N  P  G  G  V  D  G  V  K  A  I  G  T  E  S  M  M  K  E  C  R  Q  I  L  A  K  L  M  K  H  K  N  G  W  I  F  N  I  P  V  D  A  E  A  L  G  L  H  D  Y  H  Q  I  I  K  R  P  M  D  L  G  T  V  K  S  N  L  A  K  N  F  Y  P  S  P  F  E  F  A  A  D  V  R  L  T  F  N  N  A  L  L  Y  N  P  K  T  D  Q  V  N  G  F  A  E  Q  L  L  G  R  F  E  D  M  F  R  P  L  Q  D  K  M  N  K  L  E  G  G  R  R  D  Y  H  P  V  D  E  L  Q  G  S  S  W  N  H  I  P  T  P  E  R  V  K  K  P  K  P  T  P  V  P  N  I  S  K  K  Q  E  R  M  Q  N  H  S  S  A  S  T  P  S  L  P  V  P  P  P  N  P  P  A  R  Q  Q  S  P  L  S  T  P  S  P  V  R  A  P  A  A  K  P  Q  S  A  A  K  V  P  T  M  G  K  Q  P  K  P  R  A  K  D  P  N  K  R  E  M  N  M  E  E  K  H  K  L  G  V  G  L  Q  S  L  P  Q  E  K  M  P  Q  L  V  Q  I  I  R  K  R  N  E  H  L  A  Q  D  G  D  E  I  E  L  D  I  E  A  L  D  T  E  T  L  W  E  L  D  R  F  V  T  N  W  K  K  M  V  S  K  T  K  R  Q  A  L  M  N  N  L  G  P  P  S  A  S  A  A  A  S  A  A  T  T  S  V  A  E  A  D  G  V  M  L  Y  C  I  Y  L  E  S  I  *  *  A  H  S  V  L  L  C  F  S  L  I  G  S  S  N  K  C  V  F  F  C  S  L  L  L  V  R  K  T  I  P  S  K  R  P  R  R  V  M  L  V  K  R  M  *  R  *  R  M  M  N  Q  L  P  I  F  L  P  *  K  L  R  R  M  K  V  V  G  G  I  K  R  M  V  V  V  V  V  V  V  A  L  V  V  L  V  A  Q  A  V  A  P  P  L  L  V  V  Y  V  L  L  Q  M  Q  K  N  D  I  F  C  D  S  I  R  A  D  *  L  N  I  V  S  Y  A  D  S  D  S  G  S  S  S  G  S  D  S  D  A  D  D  A  H  S  *  D  L  L  I  Q  A  V  H  R  L  L  L  N  F  L  L  S  R  Y  K  V  G  D  S  N  S  D  K  L  G  K  T  S  C  L  *  T  H  G  Q  P  R  K  K  N  *  S  A  Y  M  T  *  A  K  S  K  S  S  G  N  F  V  V  L  M  A  E  K  L  W  R  *  G  S  Q  F  *  E  F  *  R  W  S  L  C  *  *  E  *  D  M  *  I  D  S  *  G  E  D  T  F  C  T  V  G  L  H  *  I  F  D  F  S  *  R  *  *  H  M  T  L  </first_frame>
            <second_frame>  A  Q  S  L  Q  T  L  A  F  I  W  V  P  T  F  I  E  F  S  F  Y  F  L  L  W  L  I  K  T  G  N  *  R  S  G  G  V  S  V  D  S  G  R  R  V  A  V  T  Y  L  F  N  F  M  I  S  T  P  F  D  N  D  K  F  H  Q  T  N  A  G  I  K  I  C  R  C  N  S  W  H  P  P  S  *  L  A  G  M  N  L  A  G  L  S  L  V  V  Q  V  V  D  S  W  G  K  P  L  I  L  I  R  N  *  T  L  I  T  T  L  T  L  R  R  S  R  S  N  S  I  T  P  L  M  V  G  I  W  M  I  R  Q  Q  *  R  K  R  R  L  M  M  P  T  R  S  I  N  G  R  L  N  Q  R  P  T  L  T  A  *  I  S  E  D  I  *  L  L  T  S  S  L  T  T  K  P  R  S  M  S  Y  G  V  G  *  W  R  R  S  N  R  S  E  T  S  R  I  E  S  N  P  V  N  *  A  P  P  T  P  D  L  K  A  N  R  R  N  N  L  E  I  N  G  L  P  L  P  D  P  V  R  I  *  R  S  S  Q  T  E  L  K  I  G  I  L  V  I  Q  V  V  W  M  V  *  R  P  S  E  R  K  V  *  *  R  N  V  G  R  F  W  Q  S  *  *  S  T  K  M  G  G  F  S  I  S  L  L  M  L  K  P  W  V  F  M  I  T  T  K  L  L  S  D  P  W  I  W  G  R  L  N  Q  I  W  L  R  I  F  T  L  P  L  L  N  L  L  L  M  L  G  L  L  S  I  M  P  C  C  I  T  L  K  Q  I  K  L  M  A  S  L  S  S  F  S  D  D  L  R  T  C  L  D  R  S  R  I  K  *  I  S  L  K  A  A  G  G  I  I  T  L  *  M  S  C  R  G  V  L  G  I  T  Y  L  L  P  R  E  *  R  N  P  N  L  P  Q  S  L  T  F  Q  R  S  K  S  G  C  K  I  I  L  V  R  Q  H  P  L  C  Q  C  H  H  P  I  H  Q  P  D  S  S  H  H  C  Q  L  R  P  Q  *  G  H  Q  L  R  S  L  N  Q  L  L  K  F  L  L  W  E  S  N  L  N  R  G  P  R  I  Q  I  K  E  R  *  I  W  R  K  S  I  N  *  E  L  G  C  K  V  C  H  K  R  R  C  R  S  W  C  R  L  *  G  R  G  M  N  I  *  P  K  T  V  M  R  L  S  S  T  L  R  P  L  T  P  R  L  Y  G  S  L  I  G  L  *  P  I  G  R  R  W  *  A  K  P  R  G  K  P  *  *  T  I  W  D  H  H  P  P  V  L  Q  L  Q  L  Q  L  H  P  L  P  K  Q  M  G  *  C  Y  I  A  F  I  L  N  L  F  D  E  H  I  L  C  S  C  A  F  L  *  L  E  V  L  T  N  A  F  S  F  A  A  Y  Y  *  *  E  K  R  F  L  Q  K  G  Q  E  G  *  C  W  *  R  G  C  R  D  R  G  *  *  T  S  Y  P  F  S  S  R  R  N  *  E  G  *  R  W  W  A  G  S  R  E  W  W  W  W  W  *  *  *  L  *  *  F  *  *  L  K  Q  W  L  L  L  F  *  W  Y  M  F  Y  F  K  C  K  K  M  I  F  F  A  T  Q  L  E  Q  I  N  *  T  *  F  L  M  Q  I  L  I  Q  E  V  H  P  E  V  T  L  M  L  M  M  H  T  L  E  I  C  *  F  K  Q  C  I  G  C  C  *  I  F  F  Y  R  G  I  K  L  G  T  R  I  L  I  S  W  G  K  P  A  V  C  K  H  M  G  N  L  G  R  K  I  D  L  L  I  *  H  R  Q  N  Q  K  A  Q  G  T  L  *  C  *  W  Q  R  S  Y  G  V  R  D  H  N  F  R  N  F  R  D  G  P  S  V  N  E  S  E  I  C  R  *  I  V  E  E  K  T  P  F  V  Q  L  V  Y  T  K  Y  L  I  F  L  E  D  D  N  T  *  H  F </second_frame>
            <third_frame>   L  N  P  F  K  P  L  P  S  F  G  F  Q  H  L  *  S  F  L  F  T  S  F  F  G  *  L  K  P  E  I  E  G  R  V  E  F  R  *  I  P  A  G  A  *  L  S  R  T  S  L  I  S  *  F  Q  H  H  L  I  T  I  N  S  T  R  R  T  P  V  L  R  F  A  G  V  I  H  G  I  R  R  L  S  *  P  E  *  I  *  L  G  S  V  W  W  C  R  W  W  I  H  G  E  N  P  L  F  S  Y  A  T  E  P  *  S  Q  P  *  P  *  E  E  A  E  A  I  P  S  H  L  *  W  S  A  Y  G  *  F  A  S  S  D  A  N  G  V  *  *  C  L  L  V  Q  S  T  A  D  *  I  N  D  Q  R  *  R  P  E  F  R  R  I  F  D  F  *  R  R  L  L  Q  Q  S  R  G  Q  *  A  T  E  S  A  D  G  G  G  R  T  D  P  K  P  Q  G  S  N  R  I  R  S  I  E  H  H  Q  P  Q  I  S  R  Q  I  E  E  T  I  W  K  *  T  A  Y  P  F  R  I  Q  *  G  S  E  E  A  P  K  R  S  *  K  *  E  F  W  *  S  R  W  C  G  W  C  E  G  H  R  N  G  K  Y  D  E  G  M  *  A  D  F  G  K  A  D  E  A  Q  K  W  V  D  F  Q  Y  P  C  *  C  *  S  L  G  S  S  *  L  P  P  N  Y  *  A  T  H  G  F  G  D  G  *  I  K  F  G  *  E  F  L  P  F  P  F  *  I  C  C  *  C  *  A  Y  F  Q  *  C  L  V  V  *  P  *  N  R  S  S  *  W  L  R  *  A  A  S  R  T  I  *  G  H  V  *  T  A  P  G  *  N  E  *  A  *  R  R  Q  A  G  L  S  P  C  R  *  V  A  G  E  F  L  E  S  H  T  Y  S  R  E  S  E  E  T  Q  T  Y  P  S  P  *  H  F  K  E  A  R  A  D  A  K  S  F  *  C  V  N  T  L  F  A  S  A  T  T  Q  S  T  S  P  T  A  V  T  I  V  N  S  V  P  S  E  G  T  S  C  E  A  S  I  S  C  *  S  S  Y  Y  G  K  A  T  *  T  E  G  Q  G  S  K  *  K  R  D  E  Y  G  G  K  A  *  I  R  S  W  V  A  K  F  A  T  R  E  D  A  A  V  G  A  D  Y  K  E  E  E  *  T  F  S  P  R  R  *  *  D  *  A  R  H  *  G  P  *  H  R  D  S  M  G  A  *  S  V  C  D  Q  L  E  E  D  G  E  Q  N  Q  E  A  S  L  D  E  Q  F  G  T  T  I  R  Q  C  C  S  F  S  C  N  Y  I  R  C  R  S  R  W  G  N  A  I  L  H  L  S  *  I  Y  L  M  S  T  F  C  A  P  V  L  F  S  D  W  K  F  *  Q  M  R  F  L  L  Q  P  T  T  S  E  K  N  D  S  F  K  K  A  K  K  G  D  V  G  E  E  D  V  E  I  E  D  D  E  P  A  T  H  F  P  P  V  E  I  E  K  D  E  G  G  G  R  D  Q  E  N  G  G  G  G  G  S  S  S  S  S  S  S  S  S  S  S  S  G  S  S  S  S  S  G  I  C  S  T  S  N  A  K  K  *  Y  F  L  R  L  N  *  S  R  L  I  E  H  S  F  L  C  R  F  *  F  R  K  F  I  R  K  *  L  *  C  *  *  C  T  L  L  R  F  V  D  S  S  S  A  *  A  V  A  E  F  S  F  I  E  V  *  S  W  G  L  E  F  *  *  V  G  E  N  Q  L  F  V  N  T  W  A  T  *  E  E  K  L  I  C  L  Y  D  I  G  K  I  K  K  L  R  E  L  C  S  V  D  G  R  E  V  M  A  L  G  I  T  I  L  G  I  L  E  M  V  P  L  L  M  R  V  R  Y  V  D  R  *  L  R  R  R  H  L  L  Y  S  W  F  T  L  N  I  *  F  F  L  K  M  I  T  H  D  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5258" stop="3693"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1563</number_coding_nucleotides>
                  <number_encoded_amino_acids>521</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMASAVLASRNESSWAQSGGAGGGFMGKTPYSHTQLNPNHNPNPKKKQKQFHHTSNGRHMDDSPAVTQTASDDAYSFNQRPIESTTNVDGLNFGGYLTFNVVSYNKAEVNELRSRLMAEVEQIRNLKDRIESGQLSTTNPRSQGKSKKQSGNKRPTPSGSSKDLKKLPNGVENRNFGNPGGVDGVKAIGTESMMKECRQILAKLMKHKNGWIFNIPVDAEALGLHDYHQIIKRPMDLGTVKSNLAKNFYPSPFEFAADVRLTFNNALLYNPKTDQVNGFAEQLLGRFEDMFRPLQDKMNKLEGGRRDYHPVDELQGSSWNHIPTPERVKKPKPTPVPNISKKQERMQNHSSASTPSLPVPPPNPPARQQSPLSTPSPVRAPAAKPQSAAKVPTMGKQPKPRAKDPNKREMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALMNNLGPPSASAAASAATTSVAEADGVMLYCIYLESI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3645" stop="3370"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMRFLLQPTTSEKNDSFKKAKKGDVGEEDVEIEDDEPATHFPPVEIEKDEGGGRDQENGGGGGSSSSSSSSSSSSGSSSSSGICSTSNAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="5290" e_stop="5119"/>
            <exon e_start="4438" e_stop="3729"/>
            <exon e_start="3624" e_stop="3402"/>
            <exon e_start="3316" e_stop="2653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.689" e_score="0.983"/>
          <exon-intron don_prob="1.000" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.889" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="5290" e_stop="5119" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.689">
            <gDNA_intron_boundary i_start="5118" i_stop="4439" i_length="680"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4438" e_stop="3729" e_length="710"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3624" e_stop="3402" e_length="223"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.889">
            <gDNA_intron_boundary i_start="3401" i_stop="3317" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="3316" e_stop="2653" e_length="664"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5290" stop="5119"/>
              <exon start="4438" stop="3926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4389" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="2888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4196" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="3107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4114" stop="3729"/>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="3309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4024" stop="3729"/>
              <exon start="3624" stop="3612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3624" stop="3402"/>
              <exon start="3316" stop="3165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3600" stop="3402"/>
              <exon start="3316" stop="2898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3570" stop="3402"/>
              <exon start="3316" stop="2653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3507" stop="3402"/>
              <exon start="3316" stop="2907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3472" stop="3402"/>
              <exon start="3316" stop="2907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3472" stop="3402"/>
              <exon start="3316" stop="2915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3425" stop="3402"/>
              <exon start="3316" stop="2915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3411" stop="3402"/>
              <exon start="3316" stop="2894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3313" stop="2894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3312" stop="2894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3305" stop="2906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3294" stop="2904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3275" stop="2897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3171" stop="2907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAA : ATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGG : CCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTG : ATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTTCTACTTCTTTGGTTTCAAGCTCCATCAACTTAAAACATATTGTTTGTGGTACATTGTGTTGGTCGGTTGACCAGCCACTAATTGTGCCAACAGCTTTGAGAAAAAAGAAATGTGGCAAATATGTTAAAAGTTGCTGGCTTAACCATGTTCTAATCGACCCTAAAATGATTGGGAATAGTTTATTTTGGCCTGAGAGCAGAATGAAGATTTAAGAAAGCATTCAACGTGTTTGAAGAGAATG</gDNA_template>
            <first_frame> T  N  A  G  I  K  I  C  R  C  N  S  W  H  P  P  S  *  L  A  G  M  N  L  A  G  L  S  L  V  V  Q  V  V  D  S  W  G  K  P  L  I  L  I  R  N  *  T  L  I  T  T  L  T  L  R  R   : N  Q  V  N  G  F  A  E  Q  L  L  G  R  F  E  D  M  F  R  P  L  Q  D  K  M  N  K  L  E  G  G  R  R  D  Y  H  P  V  D  E  L  Q  G  S  S  W  N  H  I  P  T  P  E  R  V  K  K  P  K  P  T  P  V  P  N  I  S  K  K  Q  E  R  M  Q  N  H  S  S  A  S  T  P  S  L  P  V  P  P  P  N  P  P  A  R  Q  Q  S  P  L  S  T  P  S  P  V  R  A  P  A  A  K  P  Q  S  A  A  K  V  P  T  M  G  K  Q  P  K  P  R  A  K  D  P  N  K  R  E  M  N  M  E  E  K  H  K  L  G  V  G  L  Q  S  L  P  Q  E  K  M  P  Q  L  V  Q  I  I  R  K  R  N  E  H  L  A  Q  D  G  D  E  I  E  L  D  I  E  A  L  D  T  E  T  L  W  E  L  D  R  F  V  T  N  W  K  K  M  V  S  K  T  K  R  Q  A  L  M  N  N  L  G  P  P  S  A  S  A  A  A  S  A  A  T  T  S  V  A  E  A  D  G  :  P  T  T  S  E  K  N  D  S  F  K  K  A  K  K  G  D  V  G  E  E  D  V  E  I  E  D  D  E  P  A  T  H  F  P  P  V  E  I  E  K  D  E  G  G  G  R  D  Q  E  N  G  G  G  G  G  S  S  S  S  S  S  S  S  S  S  S  S  G  S  S  S  S  S   : D  S  D  S  G  S  S  S  G  S  D  S  D  A  D  D  A  H  S  *  D  L  L  I  Q  A  V  H  R  L  L  L  N  F  L  L  S  R  Y  K  V  G  D  S  N  S  D  K  L  G  K  T  S  C  L  *  T  H  G  Q  P  R  K  K  N  *  S  A  Y  M  T  *  A  K  S  K  S  S  G  N  F  V  V  L  M  A  E  K  L  W  R  *  G  S  Q  F  *  E  F  *  R  W  S  L  C  *  *  E  *  D  M  *  I  D  S  *  G  E  D  T  F  C  T  V  G  L  H  *  I  F  D  F  S  *  R  *  *  H  M  T  L  S  T  S  L  V  S  S  S  I  N  L  K  H  I  V  C  G  T  L  C  W  S  V  D  Q  P  L  I  V  P  T  A  L  R  K  K  K  C  G  K  Y  V  K  S  C  W  L  N  H  V  L  I  D  P  K  M  I  G  N  S  L  F  W  P  E  S  R  M  K  I  *  E  S  I  Q  R  V  *  R  E   </first_frame>
            <second_frame>  R  T  P  V  L  R  F  A  G  V  I  H  G  I  R  R  L  S  *  P  E  *  I  *  L  G  S  V  W  W  C  R  W  W  I  H  G  E  N  P  L  F  S  Y  A  T  E  P  *  S  Q  P  *  P  *  E  E  :  I  K  L  M  A  S  L  S  S  F  S  D  D  L  R  T  C  L  D  R  S  R  I  K  *  I  S  L  K  A  A  G  G  I  I  T  L  *  M  S  C  R  G  V  L  G  I  T  Y  L  L  P  R  E  *  R  N  P  N  L  P  Q  S  L  T  F  Q  R  S  K  S  G  C  K  I  I  L  V  R  Q  H  P  L  C  Q  C  H  H  P  I  H  Q  P  D  S  S  H  H  C  Q  L  R  P  Q  *  G  H  Q  L  R  S  L  N  Q  L  L  K  F  L  L  W  E  S  N  L  N  R  G  P  R  I  Q  I  K  E  R  *  I  W  R  K  S  I  N  *  E  L  G  C  K  V  C  H  K  R  R  C  R  S  W  C  R  L  *  G  R  G  M  N  I  *  P  K  T  V  M  R  L  S  S  T  L  R  P  L  T  P  R  L  Y  G  S  L  I  G  L  *  P  I  G  R  R  W  *  A  K  P  R  G  K  P  *  *  T  I  W  D  H  H  P  P  V  L  Q  L  Q  L  Q  L  H  P  L  P  K  Q  M  G :   L  L  L  V  R  K  T  I  P  S  K  R  P  R  R  V  M  L  V  K  R  M  *  R  *  R  M  M  N  Q  L  P  I  F  L  P  *  K  L  R  R  M  K  V  V  G  G  I  K  R  M  V  V  V  V  V  V  V  A  L  V  V  L  V  A  Q  A  V  A  P  P  L  L  V  :  I  L  I  Q  E  V  H  P  E  V  T  L  M  L  M  M  H  T  L  E  I  C  *  F  K  Q  C  I  G  C  C  *  I  F  F  Y  R  G  I  K  L  G  T  R  I  L  I  S  W  G  K  P  A  V  C  K  H  M  G  N  L  G  R  K  I  D  L  L  I  *  H  R  Q  N  Q  K  A  Q  G  T  L  *  C  *  W  Q  R  S  Y  G  V  R  D  H  N  F  R  N  F  R  D  G  P  S  V  N  E  S  E  I  C  R  *  I  V  E  E  K  T  P  F  V  Q  L  V  Y  T  K  Y  L  I  F  L  E  D  D  N  T  *  H  F  L  L  L  W  F  Q  A  P  S  T  *  N  I  L  F  V  V  H  C  V  G  R  L  T  S  H  *  L  C  Q  Q  L  *  E  K  R  N  V  A  N  M  L  K  V  A  G  L  T  M  F  *  S  T  L  K  *  L  G  I  V  Y  F  G  L  R  A  E  *  R  F  K  K  A  F  N  V  F  E  E  N  </second_frame>
            <third_frame>   E  R  R  Y  *  D  L  P  V  *  F  M  A  S  A  V  L  A  S  R  N  E  S  S  W  A  Q  S  G  G  A  G  G  G  F  M  G  K  T  P  Y  S  H  T  Q  L  N  P  N  H  N  P  N  P  K  K  K :   S  S  *  W  L  R  *  A  A  S  R  T  I  *  G  H  V  *  T  A  P  G  *  N  E  *  A  *  R  R  Q  A  G  L  S  P  C  R  *  V  A  G  E  F  L  E  S  H  T  Y  S  R  E  S  E  E  T  Q  T  Y  P  S  P  *  H  F  K  E  A  R  A  D  A  K  S  F  *  C  V  N  T  L  F  A  S  A  T  T  Q  S  T  S  P  T  A  V  T  I  V  N  S  V  P  S  E  G  T  S  C  E  A  S  I  S  C  *  S  S  Y  Y  G  K  A  T  *  T  E  G  Q  G  S  K  *  K  R  D  E  Y  G  G  K  A  *  I  R  S  W  V  A  K  F  A  T  R  E  D  A  A  V  G  A  D  Y  K  E  E  E  *  T  F  S  P  R  R  *  *  D  *  A  R  H  *  G  P  *  H  R  D  S  M  G  A  *  S  V  C  D  Q  L  E  E  D  G  E  Q  N  Q  E  A  S  L  D  E  Q  F  G  T  T  I  R  Q  C  C  S  F  S  C  N  Y  I  R  C  R  S  R  W   : A  Y  Y  *  *  E  K  R  F  L  Q  K  G  Q  E  G  *  C  W  *  R  G  C  R  D  R  G  *  *  T  S  Y  P  F  S  S  R  R  N  *  E  G  *  R  W  W  A  G  S  R  E  W  W  W  W  W  *  *  *  L  *  *  F  *  *  L  K  Q  W  L  L  L  F  *  * :   F  *  F  R  K  F  I  R  K  *  L  *  C  *  *  C  T  L  L  R  F  V  D  S  S  S  A  *  A  V  A  E  F  S  F  I  E  V  *  S  W  G  L  E  F  *  *  V  G  E  N  Q  L  F  V  N  T  W  A  T  *  E  E  K  L  I  C  L  Y  D  I  G  K  I  K  K  L  R  E  L  C  S  V  D  G  R  E  V  M  A  L  G  I  T  I  L  G  I  L  E  M  V  P  L  L  M  R  V  R  Y  V  D  R  *  L  R  R  R  H  L  L  Y  S  W  F  T  L  N  I  *  F  F  L  K  M  I  T  H  D  T  F  Y  F  F  G  F  K  L  H  Q  L  K  T  Y  C  L  W  Y  I  V  L  V  G  *  P  A  T  N  C  A  N  S  F  E  K  K  E  M  W  Q  I  C  *  K  L  L  A  *  P  C  S  N  R  P  *  N  D  W  E  *  F  I  L  A  *  E  Q  N  E  D  L  R  K  H  S  T  C  L  K  R  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5149" stop="5119"/>
                    <exon start="4438" stop="3729"/>
                    <exon start="3624" stop="3402"/>
                    <exon start="3316" stop="3258"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLITTLTLRRNQVNGFAEQLLGRFEDMFRPLQDKMNKLEGGRRDYHPVDELQGSSWNHIPTPERVKKPKPTPVPNISKKQERMQNHSSASTPSLPVPPPNPPARQQSPLSTPSPVRAPAAKPQSAAKVPTMGKQPKPRAKDPNKREMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALMNNLGPPSASAAASAATTSVAEADGPTTSEKNDSFKKAKKGDVGEEDVEIEDDEPATHFPPVEIEKDEGGGRDQENGGGGGSSSSSSSSSSSSGSSSSSDSDSGSSSGSDSDADDAHS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2906" stop="2682"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMTLSTSLVSSSINLKHIVCGTLCWSVDQPLIVPTALRKKKCGKYVKSCWLNHVLIDPKMIGNSLFWPESRMKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="5290" e_stop="5119"/>
            <exon e_start="4438" e_stop="3729"/>
            <exon e_start="3624" e_stop="2894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.689" e_score="0.983"/>
          <exon-intron don_prob="1.000" acc_prob="0.965" e_score="0.988"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="5290" e_stop="5119" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.689">
            <gDNA_intron_boundary i_start="5118" i_stop="4439" i_length="680"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="4438" e_stop="3729" e_length="710"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="3728" i_stop="3625" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="3624" e_stop="2894" e_length="731"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5290" stop="5119"/>
              <exon start="4438" stop="3926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4123" stop="3729"/>
              <exon start="3624" stop="3309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4118" stop="3729"/>
              <exon start="3624" stop="3363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4024" stop="3729"/>
              <exon start="3624" stop="3612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3313" stop="2894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3312" stop="2894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3305" stop="2906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3294" stop="2904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3275" stop="2897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3171" stop="2907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAACGCCGGTATTAAGATTTGCCGGTGTAATTCATGGCATCCGCCGTCTTAGCTAGCCGGAATGAATCTAGCTGGGCTCAGTCTGGTGGTGCAGGTGGTGGATTCATGGGGAAAACCCCTTATTCTCATACGCAACTGAACCCTAATCACAACCCTAACCCTAAGAAGAA : ATCAAGTTAATGGCTTCGCTGAGCAGCTTCTCGGACGATTTGAGGACATGTTTAGACCGCTCCAGGATAAAATGAATAAGCTTGAAGGCGGCAGGCGGGATTATCACCCTGTAGATGAGTTGCAGGGGAGTTCTTGGAATCACATACCTACTCCCGAGAGAGTGAAGAAACCCAAACCTACCCCAGTCCCTAACATTTCAAAGAAGCAAGAGCGGATGCAAAATCATTCTAGTGCGTCAACACCCTCTTTGCCAGTGCCACCACCCAATCCACCAGCCCGACAGCAGTCACCATTGTCAACTCCGTCCCCAGTGAGGGCACCAGCTGCGAAGCCTCAATCAGCTGCTAAAGTTCCTACTATGGGAAAGCAACCTAAACCGAGGGCCAAGGATCCAAATAAAAGAGAGATGAATATGGAGGAAAAGCATAAATTAGGAGTTGGGTTGCAAAGTTTGCCACAAGAGAAGATGCCGCAGTTGGTGCAGATTATAAGGAAGAGGAATGAACATTTAGCCCAAGACGGTGATGAGATTGAGCTCGACATTGAGGCCCTTGACACCGAGACTCTATGGGAGCTTGATCGGTTTGTGACCAATTGGAAGAAGATGGTGAGCAAAACCAAGAGGCAAGCCTTGATGAACAATTTGGGACCACCATCCGCCAGTGCTGCAGCTTCAGCTGCAACTACATCCGTTGCCGAAGCAGATGGG : CCTACTACTAGTGAGAAAAACGATTCCTTCAAAAAGGCCAAGAAGGGTGATGTTGGTGAAGAGGATGTAGAGATAGAGGATGATGAACCAGCTACCCATTTTCCTCCCGTAGAAATTGAGAAGGATGAAGGTGGTGGGCGGGATCAAGAGAATGGTGGTGGTGGTGGTAGTAGTAGCTCTAGTAGTTCTAGTAGCTCAAGCAGTGGCTCCTCCTCTTCTAGTGGTATATGTTCTACTTCAAATGCAAAAAAATGATATTTTTTGCGACTCAATTAGAGCAGATTAATTGAACATAGTTTCTTATGCAGATTCTGATTCAGGAAGTTCATCCGGAAGTGACTCTGATGCTGATGATGCACACTCTTGAGATTTGTTGATTCAAGCAGTGCATAGGCTGTTGCTGAATTTTCTTTTATCGAGGTATAAAGTTGGGGACTCGAATTCTGATAAGTTGGGGAAAACCAGCTGTTTGTAAACACATGGGCAACCTAGGAAGAAAAATTGATCTGCTTATATGACATAGGCAAAATCAAAAAGCTCAGGGAACTTTGTAGTGTTGATGGCAGAGAAGTTATGGCGTTAGGGATCACAATTTTAGGAATTTTAGAGATGGTCCCTCTGTTAATGAGAGTGAGATATGTAGATAGATAGTTGAGGAGAAGACACCTTTTGTACAGTTGGTTTACACTAAATATTTGATTTTTCTTGAAGATGATAACACATGACACTTT</gDNA_template>
            <first_frame> T  N  A  G  I  K  I  C  R  C  N  S  W  H  P  P  S  *  L  A  G  M  N  L  A  G  L  S  L  V  V  Q  V  V  D  S  W  G  K  P  L  I  L  I  R  N  *  T  L  I  T  T  L  T  L  R  R   : N  Q  V  N  G  F  A  E  Q  L  L  G  R  F  E  D  M  F  R  P  L  Q  D  K  M  N  K  L  E  G  G  R  R  D  Y  H  P  V  D  E  L  Q  G  S  S  W  N  H  I  P  T  P  E  R  V  K  K  P  K  P  T  P  V  P  N  I  S  K  K  Q  E  R  M  Q  N  H  S  S  A  S  T  P  S  L  P  V  P  P  P  N  P  P  A  R  Q  Q  S  P  L  S  T  P  S  P  V  R  A  P  A  A  K  P  Q  S  A  A  K  V  P  T  M  G  K  Q  P  K  P  R  A  K  D  P  N  K  R  E  M  N  M  E  E  K  H  K  L  G  V  G  L  Q  S  L  P  Q  E  K  M  P  Q  L  V  Q  I  I  R  K  R  N  E  H  L  A  Q  D  G  D  E  I  E  L  D  I  E  A  L  D  T  E  T  L  W  E  L  D  R  F  V  T  N  W  K  K  M  V  S  K  T  K  R  Q  A  L  M  N  N  L  G  P  P  S  A  S  A  A  A  S  A  A  T  T  S  V  A  E  A  D  G  :  P  T  T  S  E  K  N  D  S  F  K  K  A  K  K  G  D  V  G  E  E  D  V  E  I  E  D  D  E  P  A  T  H  F  P  P  V  E  I  E  K  D  E  G  G  G  R  D  Q  E  N  G  G  G  G  G  S  S  S  S  S  S  S  S  S  S  S  S  G  S  S  S  S  S  G  I  C  S  T  S  N  A  K  K  *  Y  F  L  R  L  N  *  S  R  L  I  E  H  S  F  L  C  R  F  *  F  R  K  F  I  R  K  *  L  *  C  *  *  C  T  L  L  R  F  V  D  S  S  S  A  *  A  V  A  E  F  S  F  I  E  V  *  S  W  G  L  E  F  *  *  V  G  E  N  Q  L  F  V  N  T  W  A  T  *  E  E  K  L  I  C  L  Y  D  I  G  K  I  K  K  L  R  E  L  C  S  V  D  G  R  E  V  M  A  L  G  I  T  I  L  G  I  L  E  M  V  P  L  L  M  R  V  R  Y  V  D  R  *  L  R  R  R  H  L  L  Y  S  W  F  T  L  N  I  *  F  F  L  K  M  I  T  H  D  T   </first_frame>
            <second_frame>  R  T  P  V  L  R  F  A  G  V  I  H  G  I  R  R  L  S  *  P  E  *  I  *  L  G  S  V  W  W  C  R  W  W  I  H  G  E  N  P  L  F  S  Y  A  T  E  P  *  S  Q  P  *  P  *  E  E  :  I  K  L  M  A  S  L  S  S  F  S  D  D  L  R  T  C  L  D  R  S  R  I  K  *  I  S  L  K  A  A  G  G  I  I  T  L  *  M  S  C  R  G  V  L  G  I  T  Y  L  L  P  R  E  *  R  N  P  N  L  P  Q  S  L  T  F  Q  R  S  K  S  G  C  K  I  I  L  V  R  Q  H  P  L  C  Q  C  H  H  P  I  H  Q  P  D  S  S  H  H  C  Q  L  R  P  Q  *  G  H  Q  L  R  S  L  N  Q  L  L  K  F  L  L  W  E  S  N  L  N  R  G  P  R  I  Q  I  K  E  R  *  I  W  R  K  S  I  N  *  E  L  G  C  K  V  C  H  K  R  R  C  R  S  W  C  R  L  *  G  R  G  M  N  I  *  P  K  T  V  M  R  L  S  S  T  L  R  P  L  T  P  R  L  Y  G  S  L  I  G  L  *  P  I  G  R  R  W  *  A  K  P  R  G  K  P  *  *  T  I  W  D  H  H  P  P  V  L  Q  L  Q  L  Q  L  H  P  L  P  K  Q  M  G :   L  L  L  V  R  K  T  I  P  S  K  R  P  R  R  V  M  L  V  K  R  M  *  R  *  R  M  M  N  Q  L  P  I  F  L  P  *  K  L  R  R  M  K  V  V  G  G  I  K  R  M  V  V  V  V  V  V  V  A  L  V  V  L  V  A  Q  A  V  A  P  P  L  L  V  V  Y  V  L  L  Q  M  Q  K  N  D  I  F  C  D  S  I  R  A  D  *  L  N  I  V  S  Y  A  D  S  D  S  G  S  S  S  G  S  D  S  D  A  D  D  A  H  S  *  D  L  L  I  Q  A  V  H  R  L  L  L  N  F  L  L  S  R  Y  K  V  G  D  S  N  S  D  K  L  G  K  T  S  C  L  *  T  H  G  Q  P  R  K  K  N  *  S  A  Y  M  T  *  A  K  S  K  S  S  G  N  F  V  V  L  M  A  E  K  L  W  R  *  G  S  Q  F  *  E  F  *  R  W  S  L  C  *  *  E  *  D  M  *  I  D  S  *  G  E  D  T  F  C  T  V  G  L  H  *  I  F  D  F  S  *  R  *  *  H  M  T  L  </second_frame>
            <third_frame>   E  R  R  Y  *  D  L  P  V  *  F  M  A  S  A  V  L  A  S  R  N  E  S  S  W  A  Q  S  G  G  A  G  G  G  F  M  G  K  T  P  Y  S  H  T  Q  L  N  P  N  H  N  P  N  P  K  K  K :   S  S  *  W  L  R  *  A  A  S  R  T  I  *  G  H  V  *  T  A  P  G  *  N  E  *  A  *  R  R  Q  A  G  L  S  P  C  R  *  V  A  G  E  F  L  E  S  H  T  Y  S  R  E  S  E  E  T  Q  T  Y  P  S  P  *  H  F  K  E  A  R  A  D  A  K  S  F  *  C  V  N  T  L  F  A  S  A  T  T  Q  S  T  S  P  T  A  V  T  I  V  N  S  V  P  S  E  G  T  S  C  E  A  S  I  S  C  *  S  S  Y  Y  G  K  A  T  *  T  E  G  Q  G  S  K  *  K  R  D  E  Y  G  G  K  A  *  I  R  S  W  V  A  K  F  A  T  R  E  D  A  A  V  G  A  D  Y  K  E  E  E  *  T  F  S  P  R  R  *  *  D  *  A  R  H  *  G  P  *  H  R  D  S  M  G  A  *  S  V  C  D  Q  L  E  E  D  G  E  Q  N  Q  E  A  S  L  D  E  Q  F  G  T  T  I  R  Q  C  C  S  F  S  C  N  Y  I  R  C  R  S  R  W   : A  Y  Y  *  *  E  K  R  F  L  Q  K  G  Q  E  G  *  C  W  *  R  G  C  R  D  R  G  *  *  T  S  Y  P  F  S  S  R  R  N  *  E  G  *  R  W  W  A  G  S  R  E  W  W  W  W  W  *  *  *  L  *  *  F  *  *  L  K  Q  W  L  L  L  F  *  W  Y  M  F  Y  F  K  C  K  K  M  I  F  F  A  T  Q  L  E  Q  I  N  *  T  *  F  L  M  Q  I  L  I  Q  E  V  H  P  E  V  T  L  M  L  M  M  H  T  L  E  I  C  *  F  K  Q  C  I  G  C  C  *  I  F  F  Y  R  G  I  K  L  G  T  R  I  L  I  S  W  G  K  P  A  V  C  K  H  M  G  N  L  G  R  K  I  D  L  L  I  *  H  R  Q  N  Q  K  A  Q  G  T  L  *  C  *  W  Q  R  S  Y  G  V  R  D  H  N  F  R  N  F  R  D  G  P  S  V  N  E  S  E  I  C  R  *  I  V  E  E  K  T  P  F  V  Q  L  V  Y  T  K  Y  L  I  F  L  E  D  D  N  T  *  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5149" stop="5119"/>
                    <exon start="4438" stop="3729"/>
                    <exon start="3624" stop="3370"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLITTLTLRRNQVNGFAEQLLGRFEDMFRPLQDKMNKLEGGRRDYHPVDELQGSSWNHIPTPERVKKPKPTPVPNISKKQERMQNHSSASTPSLPVPPPNPPARQQSPLSTPSPVRAPAAKPQSAAKVPTMGKQPKPRAKDPNKREMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALMNNLGPPSASAAASAATTSVAEADGPTTSEKNDSFKKAKKGDVGEEDVEIEDDEPATHFPPVEIEKDEGGGRDQENGGGGGSSSSSSSSSSSSGSSSSSGICSTSNAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14627" PGL_stop="12920"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14627" e_stop="14517"/>
            <exon e_start="14313" e_stop="14220"/>
            <exon e_start="13187" e_stop="12989"/>
            <exon e_start="12928" e_stop="12920"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.369" e_score="0.995"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14627" e_stop="14517" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14516" i_stop="14314" i_length="203"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14313" e_stop="14220" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14219" i_stop="13188" i_length="1032"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="13187" e_stop="12989" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.369">
            <gDNA_intron_boundary i_start="12988" i_stop="12929" i_length="60"/>
          </intron>
          <exon e_serial="4" e_score="0.667">
            <gDNA_exon_boundary e_start="12928" e_stop="12920" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14627" stop="14517"/>
              <exon start="14313" stop="14220"/>
              <exon start="13187" stop="12998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14626" stop="14517"/>
              <exon start="14313" stop="14220"/>
              <exon start="13187" stop="13016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14626" stop="14517"/>
              <exon start="14313" stop="14220"/>
              <exon start="13187" stop="13018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277304" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14599" stop="14517"/>
              <exon start="14313" stop="14220"/>
              <exon start="13187" stop="12989"/>
              <exon start="12928" stop="12920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14581" stop="14517"/>
              <exon start="14313" stop="14220"/>
              <exon start="13187" stop="13016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277305" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14537" stop="14517"/>
              <exon start="14313" stop="14220"/>
              <exon start="13187" stop="12989"/>
              <exon start="12928" stop="12921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCATTATACCAAGTTTCTCTTCTTTAATTTTCTCTGTTGAGTTACTAATTTTCAAAACATGATGAATGAACCACCAAAATATGGTTATCCATATCCCTCTCAAGGTCAAG : GGTATTATCAAGGTGGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTCCTCCTCCTCCTCAGAAAAATAGAGGTTTTCTTGAAGGATG : TCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTCTTGTAATTAATTATTAAGGTCTACCTTTTTATTTTTGCTTTAATTTGTAGTACATATACCAATGTATAAGAATTGTATAATGTGAATAAGTTCTTTATGAACACTATTATTAGGAGTTATATTGTTGTAATA : AAATTAGAA</gDNA_template>
            <first_frame> T  I  I  P  S  F  S  S  L  I  F  S  V  E  L  L  I  F  K  T  *  *  M  N  H  Q  N  M  V  I  H  I  P  L  K  V  K  :  G  I  I  K  V  V  L  L  L  *  W  H  H  Q  H  M  L  L  L  L  L  L  R  K  I  E  V  F  L  K  D   : V  *  Q  L  C  V  V  A  A  C  *  M  S  V  A  V  I  P  L  *  S  V  S  C  N  *  L  L  R  S  T  F  L  F  L  L  *  F  V  V  H  I  P  M  Y  K  N  C  I  M  *  I  S  S  L  *  T  L  L  L  G  V  I  L  L  *  * :   N  *   </first_frame>
            <second_frame>  P  L  Y  Q  V  S  L  L  *  F  S  L  L  S  Y  *  F  S  K  H  D  E  *  T  T  K  I  W  L  S  I  S  L  S  R  S  R :   V  L  S  R  W  S  S  S  C  D  G  T  T  N  I  C  C  S  S  S  S  S  E  K  *  R  F  S  *  R  M  :  S  S  S  S  V  L  L  L  P  V  R  *  V  L  L  *  S  L  C  N  L  C  L  V  I  N  Y  *  G  L  P  F  Y  F  C  F  N  L  *  Y  I  Y  Q  C  I  R  I  V  *  C  E  *  V  L  Y  E  H  Y  Y  *  E  L  Y  C  C  N   : K  I  R  </second_frame>
            <third_frame>   H  Y  T  K  F  L  F  F  N  F  L  C  *  V  T  N  F  Q  N  M  M  N  E  P  P  K  Y  G  Y  P  Y  P  S  Q  G  Q   : G  Y  Y  Q  G  G  P  P  P  V  M  A  P  P  T  Y  A  A  P  P  P  P  Q  K  N  R  G  F  L  E  G  C :   L  A  A  L  C  C  C  C  L  L  D  E  C  C  C  D  P  S  V  I  C  V  L  *  L  I  I  K  V  Y  L  F  I  F  A  L  I  C  S  T  Y  T  N  V  *  E  L  Y  N  V  N  K  F  F  M  N  T  I  I  R  S  Y  I  V  V  I  :  K  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14586" stop="14517"/>
                    <exon start="14313" stop="14220"/>
                    <exon start="13187" stop="13115"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTNFQNMMNEPPKYGYPYPSQGQGYYQGGPPPVMAPPTYAAPPPPQKNRGFLEGCLAALCCCCLLDECCCDPSVICVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14627" e_stop="14517"/>
            <exon e_start="14313" e_stop="14220"/>
            <exon e_start="13187" e_stop="12951"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14627" e_stop="14517" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14516" i_stop="14314" i_length="203"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14313" e_stop="14220" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14219" i_stop="13188" i_length="1032"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="13187" e_stop="12951" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14627" stop="14517"/>
              <exon start="14313" stop="14220"/>
              <exon start="13187" stop="12998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14626" stop="14517"/>
              <exon start="14313" stop="14220"/>
              <exon start="13187" stop="13016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14626" stop="14517"/>
              <exon start="14313" stop="14220"/>
              <exon start="13187" stop="13018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277304" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14624" stop="14517"/>
              <exon start="14313" stop="14220"/>
              <exon start="13187" stop="12951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14581" stop="14517"/>
              <exon start="14313" stop="14220"/>
              <exon start="13187" stop="13016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277305" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCATTATACCAAGTTTCTCTTCTTTAATTTTCTCTGTTGAGTTACTAATTTTCAAAACATGATGAATGAACCACCAAAATATGGTTATCCATATCCCTCTCAAGGTCAAG : GGTATTATCAAGGTGGTCCTCCTCCTGTGATGGCACCACCAACATATGCTGCTCCTCCTCCTCCTCAGAAAAATAGAGGTTTTCTTGAAGGATG : TCTAGCAGCTCTGTGTTGTTGCTGCCTGTTAGATGAGTGTTGCTGTGATCCCTCTGTAATCTGTGTCTTGTAATTAATTATTAAGGTCTACCTTTTTATTTTTGCTTTAATTTGTAGTACATATACCAATGTATAAGAATTGTATAATGTGAATAAGTTCTTTATGAACACTATTATTAGGAGTTATATTGTTGTAATAATCTTTTTGATTTGAATCATTGAACTTCTATTTCATCT</gDNA_template>
            <first_frame> T  I  I  P  S  F  S  S  L  I  F  S  V  E  L  L  I  F  K  T  *  *  M  N  H  Q  N  M  V  I  H  I  P  L  K  V  K  :  G  I  I  K  V  V  L  L  L  *  W  H  H  Q  H  M  L  L  L  L  L  L  R  K  I  E  V  F  L  K  D   : V  *  Q  L  C  V  V  A  A  C  *  M  S  V  A  V  I  P  L  *  S  V  S  C  N  *  L  L  R  S  T  F  L  F  L  L  *  F  V  V  H  I  P  M  Y  K  N  C  I  M  *  I  S  S  L  *  T  L  L  L  G  V  I  L  L  *  *  S  F  *  F  E  S  L  N  F  Y  F  I  </first_frame>
            <second_frame>  P  L  Y  Q  V  S  L  L  *  F  S  L  L  S  Y  *  F  S  K  H  D  E  *  T  T  K  I  W  L  S  I  S  L  S  R  S  R :   V  L  S  R  W  S  S  S  C  D  G  T  T  N  I  C  C  S  S  S  S  S  E  K  *  R  F  S  *  R  M  :  S  S  S  S  V  L  L  L  P  V  R  *  V  L  L  *  S  L  C  N  L  C  L  V  I  N  Y  *  G  L  P  F  Y  F  C  F  N  L  *  Y  I  Y  Q  C  I  R  I  V  *  C  E  *  V  L  Y  E  H  Y  Y  *  E  L  Y  C  C  N  N  L  F  D  L  N  H  *  T  S  I  S  S </second_frame>
            <third_frame>   H  Y  T  K  F  L  F  F  N  F  L  C  *  V  T  N  F  Q  N  M  M  N  E  P  P  K  Y  G  Y  P  Y  P  S  Q  G  Q   : G  Y  Y  Q  G  G  P  P  P  V  M  A  P  P  T  Y  A  A  P  P  P  P  Q  K  N  R  G  F  L  E  G  C :   L  A  A  L  C  C  C  C  L  L  D  E  C  C  C  D  P  S  V  I  C  V  L  *  L  I  I  K  V  Y  L  F  I  F  A  L  I  C  S  T  Y  T  N  V  *  E  L  Y  N  V  N  K  F  F  M  N  T  I  I  R  S  Y  I  V  V  I  I  F  L  I  *  I  I  E  L  L  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14586" stop="14517"/>
                    <exon start="14313" stop="14220"/>
                    <exon start="13187" stop="13115"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTNFQNMMNEPPKYGYPYPSQGQGYYQGGPPPVMAPPTYAAPPPPQKNRGFLEGCLAALCCCCLLDECCCDPSVICVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16982" PGL_stop="16661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16982" e_stop="16661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="16982" e_stop="16661" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16982" stop="16661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16982" stop="16692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16982" stop="16832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTATATAATTCGCAATTGTATAATTCGTTGACCTTTTCCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGTG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  Y  I  I  R  N  C  I  I  R  *  P  F  P  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  K  N  R  I  I  H  F  C  V  *  S  E  S  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  I  *  F  A  I  V  *  F  V  D  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  K  T  E  L  Y  T  S  V  Y  K  A  R  V </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  T  F  S  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0071F18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="25533" PGL_stop="23727"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25533" e_stop="23727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25533" e_stop="23727" e_length="1807"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25533" stop="25176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25505" stop="24710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25492" stop="24941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25492" stop="24975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25492" stop="24979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25489" stop="24648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25486" stop="24622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25486" stop="25054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25485" stop="25071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25484" stop="24888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25476" stop="24832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25476" stop="25043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25476" stop="25064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25475" stop="25037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25474" stop="24975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25465" stop="24845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25465" stop="25013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25325" stop="24713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25064" stop="24496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24823" stop="24200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24823" stop="24242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24813" stop="24161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24731" stop="24286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24511" stop="23813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24425" stop="23754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24425" stop="23949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24392" stop="23794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24231" stop="23727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCCCCCATCTTCTCCATTTTTTTCAGTCTTCTCTAATGGCCTAAACTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCCGTGAAATTGATTTTGAAAACACTGCCGCATGGGAAGATCCGAATCAAATCCCTAATTATAAGGTCAAATTCATGTGTAGTTATGGTGGTAAGATTCACCCGAGACCTCATGATAACCAGCTTGCTTACATCGGCGGTGAAACTAAAATACTATCTGTTGAGCGGAATACTAAGTTTCCTCTTCTCATTTCTAAGCTTGCTGCTATTTGTGATACGGATACTGTTTCCTTTAAGTATCAGCTGCCAGGTGAGGACCTTGATGCTTTAATTTCTGTTACTAATGATGATGATTTAGAACATATGATGCATGAGTATGATCGTCTTTATAGAGCTTCACCTAAACCAGCTAGGCTTAGGTTGTTTTTGTTTCCGGCCAATACGCCGGCGACTGTTGGGAGTGGGGTGTCGCAGAGCCGGAGTTTTGGTTCGGAGGATTCCAAATCGGAGAAGGATAGGTTTGTCGATGCGTTGAATTCTGGTCCGATTCAGGCGTCTCCGGCTGCGGGGGCTGTTGCACAGCAGGTTGGAAACGCGGATTTTCTGTTTGGTTCAGAGAAAGGGATGGTACCGCCACATGTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTCGGAAAAGCGACGATAATCTGACAGCGGCTTTCCCCGGAGGTGATTATTATGTTCAGAGAGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTTCCCGGAGGAGTACTGCCGGCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCGGCCGGAGCATATCAACCACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCAGGTACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCGCAACTACCATGGGAGTTGGTGTAGCAGATGCAGGTGGGTACACACAGATGGCGTACGATGGTGGAGTAGGAAGGCAGATGTACTATCCTCCCCAAGGTGGTGTCATAGCGCCACCACAACAACAACCGCAGTACCACGCAATGCCGCCACAAGCTGTTGTTGGCTCCGATATGAGACCTCAAGAAGCTGCTAAAGTCGTACCTGTGAAACCTACACAAACATCAGTGTGATTGATCTGTGCTTTCCTATAAAAATGATCAAAATAATAAAATAAAAGTAGTAGGGGAGTTTATAGTATAATCCTGTTTATCTTGAGAAGATTTATGTGCCATATCGTGTACATTTTGAGTGGAGATTGATTTCTATGCTTCTTCAAGATTATATCTTCCTTTATATCATGCAATGCATTTTGTGATTTTCCATTTTTTAACTTGAAGAAAAAGTATCCTTTTTTCTTGA</gDNA_template>
            <first_frame> I  P  P  S  S  P  F  F  S  V  F  S  N  G  L  N  S  T  Y  Q  K  Y  S  R  K  S  S  *  T  P  Q  N  M  E  N  Y  S  Y  T  S  Y  P  E  S  G  D  S  S  P  R  S  R  E  I  D  F  E  N  T  A  A  W  E  D  P  N  Q  I  P  N  Y  K  V  K  F  M  C  S  Y  G  G  K  I  H  P  R  P  H  D  N  Q  L  A  Y  I  G  G  E  T  K  I  L  S  V  E  R  N  T  K  F  P  L  L  I  S  K  L  A  A  I  C  D  T  D  T  V  S  F  K  Y  Q  L  P  G  E  D  L  D  A  L  I  S  V  T  N  D  D  D  L  E  H  M  M  H  E  Y  D  R  L  Y  R  A  S  P  K  P  A  R  L  R  L  F  L  F  P  A  N  T  P  A  T  V  G  S  G  V  S  Q  S  R  S  F  G  S  E  D  S  K  S  E  K  D  R  F  V  D  A  L  N  S  G  P  I  Q  A  S  P  A  A  G  A  V  A  Q  Q  V  G  N  A  D  F  L  F  G  S  E  K  G  M  V  P  P  H  V  K  L  R  D  P  N  S  E  Q  V  V  K  E  P  E  M  P  V  H  G  V  D  D  R  M  M  G  T  D  P  I  Q  K  H  I  Q  D  L  Q  R  L  H  L  E  E  Q  Q  N  L  Y  R  R  K  S  D  D  N  L  T  A  A  F  P  G  G  D  Y  Y  V  Q  R  G  P  E  K  I  A  S  P  T  V  P  G  T  V  P  A  Q  V  G  Y  W  Q  E  K  Q  V  P  G  G  V  L  P  A  S  S  L  G  M  E  Q  P  V  Y  M  I  H  Q  A  P  A  G  A  Y  Q  P  H  Q  H  Q  H  Q  H  P  Q  F  V  R  P  M  A  G  P  P  G  Q  G  Y  Y  A  V  Q  R  M  P  Q  E  P  Y  R  D  Q  P  V  Y  N  V  M  P  S  L  P  Q  A  V  P  T  V  A  A  A  P  P  T  L  Q  S  Q  V  P  P  K  V  A  G  Y  S  E  G  Y  G  M  V  R  P  A  T  T  M  G  V  G  V  A  D  A  G  G  Y  T  Q  M  A  Y  D  G  G  V  G  R  Q  M  Y  Y  P  P  Q  G  G  V  I  A  P  P  Q  Q  Q  P  Q  Y  H  A  M  P  P  Q  A  V  V  G  S  D  M  R  P  Q  E  A  A  K  V  V  P  V  K  P  T  Q  T  S  V  *  L  I  C  A  F  L  *  K  *  S  K  *  *  N  K  S  S  R  G  V  Y  S  I  I  L  F  I  L  R  R  F  M  C  H  I  V  Y  I  L  S  G  D  *  F  L  C  F  F  K  I  I  S  S  F  I  S  C  N  A  F  C  D  F  P  F  F  N  L  K  K  K  Y  P  F  F  L  </first_frame>
            <second_frame>  S  P  H  L  L  H  F  F  Q  S  S  L  M  A  *  T  L  L  I  K  N  T  V  E  N  P  P  K  P  P  K  T  W  R  T  T  L  T  P  L  T  L  N  P  A  I  H  L  P  V  P  V  K  L  I  L  K  T  L  P  H  G  K  I  R  I  K  S  L  I  I  R  S  N  S  C  V  V  M  V  V  R  F  T  R  D  L  M  I  T  S  L  L  T  S  A  V  K  L  K  Y  Y  L  L  S  G  I  L  S  F  L  F  S  F  L  S  L  L  L  F  V  I  R  I  L  F  P  L  S  I  S  C  Q  V  R  T  L  M  L  *  F  L  L  L  M  M  M  I  *  N  I  *  C  M  S  M  I  V  F  I  E  L  H  L  N  Q  L  G  L  G  C  F  C  F  R  P  I  R  R  R  L  L  G  V  G  C  R  R  A  G  V  L  V  R  R  I  P  N  R  R  R  I  G  L  S  M  R  *  I  L  V  R  F  R  R  L  R  L  R  G  L  L  H  S  R  L  E  T  R  I  F  C  L  V  Q  R  K  G  W  Y  R  H  M  *  N  *  E  I  R  T  L  S  K  L  L  R  N  Q  R  C  R  F  M  E  W  M  I  G  *  W  G  L  I  R  S  R  S  T  F  R  I  C  R  D  C  I  *  K  S  N  K  I  C  I  V  G  K  A  T  I  I  *  Q  R  L  S  P  E  V  I  I  M  F  R  E  D  R  R  K  *  L  L  L  P  C  R  V  Q  Y  L  H  R  L  A  I  G  R  K  N  K  F  P  E  E  Y  C  R  R  A  V  S  V  W  N  N  Q  F  T  *  F  I  K  H  R  P  E  H  I  N  H  T  S  T  N  T  N  T  H  N  L  S  G  Q  W  P  D  H  R  V  K  G  T  T  P  Y  R  G  C  H  R  S  L  T  G  I  N  Q  F  T  M  S  C  L  V  Y  H  K  Q  Y  R  Q  L  Q  R  H  H  Q  L  Y  N  L  R  Y  L  Q  R  W  L  V  I  R  K  D  M  A  W  *  D  P  Q  L  P  W  E  L  V  *  Q  M  Q  V  G  T  H  R  W  R  T  M  V  E  *  E  G  R  C  T  I  L  P  K  V  V  S  *  R  H  H  N  N  N  R  S  T  T  Q  C  R  H  K  L  L  L  A  P  I  *  D  L  K  K  L  L  K  S  Y  L  *  N  L  H  K  H  Q  C  D  *  S  V  L  S  Y  K  N  D  Q  N  N  K  I  K  V  V  G  E  F  I  V  *  S  C  L  S  *  E  D  L  C  A  I  S  C  T  F  *  V  E  I  D  F  Y  A  S  S  R  L  Y  L  P  L  Y  H  A  M  H  F  V  I  F  H  F  L  T  *  R  K  S  I  L  F  S  * </second_frame>
            <third_frame>   P  P  I  F  S  I  F  F  S  L  L  *  W  P  K  L  Y  L  S  K  I  Q  *  K  I  L  L  N  P  P  K  H  G  E  L  L  L  H  L  L  P  *  I  R  R  F  I  S  P  F  P  *  N  *  F  *  K  H  C  R  M  G  R  S  E  S  N  P  *  L  *  G  Q  I  H  V  *  L  W  W  *  D  S  P  E  T  S  *  *  P  A  C  L  H  R  R  *  N  *  N  T  I  C  *  A  E  Y  *  V  S  S  S  H  F  *  A  C  C  Y  L  *  Y  G  Y  C  F  L  *  V  S  A  A  R  *  G  P  *  C  F  N  F  C  Y  *  *  *  *  F  R  T  Y  D  A  *  V  *  S  S  L  *  S  F  T  *  T  S  *  A  *  V  V  F  V  S  G  Q  Y  A  G  D  C  W  E  W  G  V  A  E  P  E  F  W  F  G  G  F  Q  I  G  E  G  *  V  C  R  C  V  E  F  W  S  D  S  G  V  S  G  C  G  G  C  C  T  A  G  W  K  R  G  F  S  V  W  F  R  E  R  D  G  T  A  T  C  E  I  E  R  S  E  L  *  A  S  C  *  G  T  R  D  A  G  S  W  S  G  *  *  D  D  G  D  *  S  D  P  E  A  H  S  G  S  A  E  I  A  S  R  R  A  T  K  F  V  S  S  E  K  R  R  *  S  D  S  G  F  P  R  R  *  L  L  C  S  E  R  T  G  E  N  S  F  S  Y  R  A  G  Y  S  T  C  T  G  W  L  L  A  G  K  T  S  S  R  R  S  T  A  G  E  Q  S  R  Y  G  T  T  S  L  H  D  S  S  S  T  G  R  S  I  S  T  T  P  A  P  T  P  T  P  T  I  C  Q  A  N  G  R  T  T  G  S  R  V  L  R  R  T  E  D  A  T  G  A  L  Q  G  S  T  S  L  Q  C  H  A  *  F  T  T  S  S  T  D  S  C  S  G  T  T  N  F  T  I  S  G  T  S  K  G  G  W  L  F  G  R  I  W  H  G  K  T  R  N  Y  H  G  S  W  C  S  R  C  R  W  V  H  T  D  G  V  R  W  W  S  R  K  A  D  V  L  S  S  P  R  W  C  H  S  A  T  T  T  T  T  A  V  P  R  N  A  A  T  S  C  C  W  L  R  Y  E  T  S  R  S  C  *  S  R  T  C  E  T  Y  T  N  I  S  V  I  D  L  C  F  P  I  K  M  I  K  I  I  K  *  K  *  *  G  S  L  *  Y  N  P  V  Y  L  E  K  I  Y  V  P  Y  R  V  H  F  E  W  R  L  I  S  M  L  L  Q  D  Y  I  F  L  Y  I  M  Q  C  I  L  *  F  S  I  F  *  L  E  E  K  V  S  F  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25449" stop="23956"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1491</number_coding_nucleotides>
                  <number_encoded_amino_acids>497</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPQNMENYSYTSYPESGDSSPRSREIDFENTAAWEDPNQIPNYKVKFMCSYGGKIHPRPHDNQLAYIGGETKILSVERNTKFPLLISKLAAICDTDTVSFKYQLPGEDLDALISVTNDDDLEHMMHEYDRLYRASPKPARLRLFLFPANTPATVGSGVSQSRSFGSEDSKSEKDRFVDALNSGPIQASPAAGAVAQQVGNADFLFGSEKGMVPPHVKLRDPNSEQVVKEPEMPVHGVDDRMMGTDPIQKHIQDLQRLHLEEQQNLYRRKSDDNLTAAFPGGDYYVQRGPEKIASPTVPGTVPAQVGYWQEKQVPGGVLPASSLGMEQPVYMIHQAPAGAYQPHQHQHQHPQFVRPMAGPPGQGYYAVQRMPQEPYRDQPVYNVMPSLPQAVPTVAAAPPTLQSQVPPKVAGYSEGYGMVRPATTMGVGVADAGGYTQMAYDGGVGRQMYYPPQGGVIAPPQQQPQYHAMPPQAVVGSDMRPQEAAKVVPVKPTQTSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25488" e_stop="25380"/>
            <exon e_start="24804" e_stop="23727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="25488" e_stop="25380" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25379" i_stop="24805" i_length="575"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24804" e_stop="23727" e_length="1078"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25488" stop="25380"/>
              <exon start="24804" stop="24186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25488" stop="25380"/>
              <exon start="24804" stop="24244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24731" stop="24286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24511" stop="23813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24425" stop="23754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24425" stop="23949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24392" stop="23794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24231" stop="23727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTCTACTTATCAAAAATACAGTAGAAAATCCTCCTAAACCCCCCAAAACATGGAGAACTACTCTTACACCTCTTACCCTGAATCCGGCGATTCATCTCCCCGTTCCC : GTGAAATTGAGAGATCCGAACTCTGAGCAAGTTGTTAAGGAACCAGAGATGCCGGTTCATGGAGTGGATGATAGGATGATGGGGACTGATCCGATCCAGAAGCACATTCAGGATCTGCAGAGATTGCATCTAGAAGAGCAACAAAATTTGTATCGTCGGAAAAGCGACGATAATCTGACAGCGGCTTTCCCCGGAGGTGATTATTATGTTCAGAGAGGACCGGAGAAAATAGCTTCTCCTACCGTGCCGGGTACAGTACCTGCACAGGTTGGCTATTGGCAGGAAAAACAAGTTCCCGGAGGAGTACTGCCGGCGAGCAGTCTCGGTATGGAACAACCAGTTTACATGATTCATCAAGCACCGGCCGGAGCATATCAACCACACCAGCACCAACACCAACACCCACAATTTGTCAGGCCAATGGCCGGACCACCGGGTCAAGGGTACTACGCCGTACAGAGGATGCCACAGGAGCCTTACAGGGATCAACCAGTTTACAATGTCATGCCTAGTTTACCACAAGCAGTACCGACAGTTGCAGCGGCACCACCAACTTTACAATCTCAGGTACCTCCAAAGGTGGCTGGTTATTCGGAAGGATATGGCATGGTAAGACCCGCAACTACCATGGGAGTTGGTGTAGCAGATGCAGGTGGGTACACACAGATGGCGTACGATGGTGGAGTAGGAAGGCAGATGTACTATCCTCCCCAAGGTGGTGTCATAGCGCCACCACAACAACAACCGCAGTACCACGCAATGCCGCCACAAGCTGTTGTTGGCTCCGATATGAGACCTCAAGAAGCTGCTAAAGTCGTACCTGTGAAACCTACACAAACATCAGTGTGATTGATCTGTGCTTTCCTATAAAAATGATCAAAATAATAAAATAAAAGTAGTAGGGGAGTTTATAGTATAATCCTGTTTATCTTGAGAAGATTTATGTGCCATATCGTGTACATTTTGAGTGGAGATTGATTTCTATGCTTCTTCAAGATTATATCTTCCTTTATATCATGCAATGCATTTTGTGATTTTCCATTTTTTAACTTGAAGAAAAAGTATCCTTTTTTCTTGA</gDNA_template>
            <first_frame> N  S  T  Y  Q  K  Y  S  R  K  S  S  *  T  P  Q  N  M  E  N  Y  S  Y  T  S  Y  P  E  S  G  D  S  S  P  R  S   : R  E  I  E  R  S  E  L  *  A  S  C  *  G  T  R  D  A  G  S  W  S  G  *  *  D  D  G  D  *  S  D  P  E  A  H  S  G  S  A  E  I  A  S  R  R  A  T  K  F  V  S  S  E  K  R  R  *  S  D  S  G  F  P  R  R  *  L  L  C  S  E  R  T  G  E  N  S  F  S  Y  R  A  G  Y  S  T  C  T  G  W  L  L  A  G  K  T  S  S  R  R  S  T  A  G  E  Q  S  R  Y  G  T  T  S  L  H  D  S  S  S  T  G  R  S  I  S  T  T  P  A  P  T  P  T  P  T  I  C  Q  A  N  G  R  T  T  G  S  R  V  L  R  R  T  E  D  A  T  G  A  L  Q  G  S  T  S  L  Q  C  H  A  *  F  T  T  S  S  T  D  S  C  S  G  T  T  N  F  T  I  S  G  T  S  K  G  G  W  L  F  G  R  I  W  H  G  K  T  R  N  Y  H  G  S  W  C  S  R  C  R  W  V  H  T  D  G  V  R  W  W  S  R  K  A  D  V  L  S  S  P  R  W  C  H  S  A  T  T  T  T  T  A  V  P  R  N  A  A  T  S  C  C  W  L  R  Y  E  T  S  R  S  C  *  S  R  T  C  E  T  Y  T  N  I  S  V  I  D  L  C  F  P  I  K  M  I  K  I  I  K  *  K  *  *  G  S  L  *  Y  N  P  V  Y  L  E  K  I  Y  V  P  Y  R  V  H  F  E  W  R  L  I  S  M  L  L  Q  D  Y  I  F  L  Y  I  M  Q  C  I  L  *  F  S  I  F  *  L  E  E  K  V  S  F  F  L   </first_frame>
            <second_frame>  T  L  L  I  K  N  T  V  E  N  P  P  K  P  P  K  T  W  R  T  T  L  T  P  L  T  L  N  P  A  I  H  L  P  V  P  :  V  K  L  R  D  P  N  S  E  Q  V  V  K  E  P  E  M  P  V  H  G  V  D  D  R  M  M  G  T  D  P  I  Q  K  H  I  Q  D  L  Q  R  L  H  L  E  E  Q  Q  N  L  Y  R  R  K  S  D  D  N  L  T  A  A  F  P  G  G  D  Y  Y  V  Q  R  G  P  E  K  I  A  S  P  T  V  P  G  T  V  P  A  Q  V  G  Y  W  Q  E  K  Q  V  P  G  G  V  L  P  A  S  S  L  G  M  E  Q  P  V  Y  M  I  H  Q  A  P  A  G  A  Y  Q  P  H  Q  H  Q  H  Q  H  P  Q  F  V  R  P  M  A  G  P  P  G  Q  G  Y  Y  A  V  Q  R  M  P  Q  E  P  Y  R  D  Q  P  V  Y  N  V  M  P  S  L  P  Q  A  V  P  T  V  A  A  A  P  P  T  L  Q  S  Q  V  P  P  K  V  A  G  Y  S  E  G  Y  G  M  V  R  P  A  T  T  M  G  V  G  V  A  D  A  G  G  Y  T  Q  M  A  Y  D  G  G  V  G  R  Q  M  Y  Y  P  P  Q  G  G  V  I  A  P  P  Q  Q  Q  P  Q  Y  H  A  M  P  P  Q  A  V  V  G  S  D  M  R  P  Q  E  A  A  K  V  V  P  V  K  P  T  Q  T  S  V  *  L  I  C  A  F  L  *  K  *  S  K  *  *  N  K  S  S  R  G  V  Y  S  I  I  L  F  I  L  R  R  F  M  C  H  I  V  Y  I  L  S  G  D  *  F  L  C  F  F  K  I  I  S  S  F  I  S  C  N  A  F  C  D  F  P  F  F  N  L  K  K  K  Y  P  F  F  L  </second_frame>
            <third_frame>   L  Y  L  S  K  I  Q  *  K  I  L  L  N  P  P  K  H  G  E  L  L  L  H  L  L  P  *  I  R  R  F  I  S  P  F  P :   *  N  *  E  I  R  T  L  S  K  L  L  R  N  Q  R  C  R  F  M  E  W  M  I  G  *  W  G  L  I  R  S  R  S  T  F  R  I  C  R  D  C  I  *  K  S  N  K  I  C  I  V  G  K  A  T  I  I  *  Q  R  L  S  P  E  V  I  I  M  F  R  E  D  R  R  K  *  L  L  L  P  C  R  V  Q  Y  L  H  R  L  A  I  G  R  K  N  K  F  P  E  E  Y  C  R  R  A  V  S  V  W  N  N  Q  F  T  *  F  I  K  H  R  P  E  H  I  N  H  T  S  T  N  T  N  T  H  N  L  S  G  Q  W  P  D  H  R  V  K  G  T  T  P  Y  R  G  C  H  R  S  L  T  G  I  N  Q  F  T  M  S  C  L  V  Y  H  K  Q  Y  R  Q  L  Q  R  H  H  Q  L  Y  N  L  R  Y  L  Q  R  W  L  V  I  R  K  D  M  A  W  *  D  P  Q  L  P  W  E  L  V  *  Q  M  Q  V  G  T  H  R  W  R  T  M  V  E  *  E  G  R  C  T  I  L  P  K  V  V  S  *  R  H  H  N  N  N  R  S  T  T  Q  C  R  H  K  L  L  L  A  P  I  *  D  L  K  K  L  L  K  S  Y  L  *  N  L  H  K  H  Q  C  D  *  S  V  L  S  Y  K  N  D  Q  N  N  K  I  K  V  V  G  E  F  I  V  *  S  C  L  S  *  E  D  L  C  A  I  S  C  T  F  *  V  E  I  D  F  Y  A  S  S  R  L  Y  L  P  L  Y  H  A  M  H  F  V  I  F  H  F  L  T  *  R  K  S  I  L  F  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25487" stop="25380"/>
                    <exon start="24804" stop="23956"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLLIKNTVENPPKPPKTWRTTLTPLTLNPAIHLPVPVKLRDPNSEQVVKEPEMPVHGVDDRMMGTDPIQKHIQDLQRLHLEEQQNLYRRKSDDNLTAAFPGGDYYVQRGPEKIASPTVPGTVPAQVGYWQEKQVPGGVLPASSLGMEQPVYMIHQAPAGAYQPHQHQHQHPQFVRPMAGPPGQGYYAVQRMPQEPYRDQPVYNVMPSLPQAVPTVAAAPPTLQSQVPPKVAGYSEGYGMVRPATTMGVGVADAGGYTQMAYDGGVGRQMYYPPQGGVIAPPQQQPQYHAMPPQAVVGSDMRPQEAAKVVPVKPTQTSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="36860" PGL_stop="48660"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36911" e_stop="37046"/>
            <exon e_start="37139" e_stop="37248"/>
            <exon e_start="37323" e_stop="37383"/>
            <exon e_start="37804" e_stop="38000"/>
            <exon e_start="38071" e_stop="38200"/>
            <exon e_start="38438" e_stop="38515"/>
            <exon e_start="38596" e_stop="38743"/>
            <exon e_start="42689" e_stop="42801"/>
            <exon e_start="42887" e_stop="42962"/>
            <exon e_start="43910" e_stop="43981"/>
            <exon e_start="44439" e_stop="44490"/>
            <exon e_start="45082" e_stop="45162"/>
            <exon e_start="45247" e_stop="45330"/>
            <exon e_start="45497" e_stop="45600"/>
            <exon e_start="45685" e_stop="45777"/>
            <exon e_start="46660" e_stop="46728"/>
            <exon e_start="47326" e_stop="47390"/>
            <exon e_start="47749" e_stop="47810"/>
            <exon e_start="48224" e_stop="48319"/>
            <exon e_start="48406" e_stop="48660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.796" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.387" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.271" e_score="1.000"/>
          <exon-intron don_prob="0.647" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.489" acc_prob="0.620" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.755" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36911" e_stop="37046" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.796" acc_prob="0.978">
            <gDNA_intron_boundary i_start="37047" i_stop="37138" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37139" e_stop="37248" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.910" acc_prob="0.915">
            <gDNA_intron_boundary i_start="37249" i_stop="37322" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37323" e_stop="37383" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="37384" i_stop="37803" i_length="420"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37804" e_stop="38000" e_length="197"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.882">
            <gDNA_intron_boundary i_start="38001" i_stop="38070" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38071" e_stop="38200" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.387">
            <gDNA_intron_boundary i_start="38201" i_stop="38437" i_length="237"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38438" e_stop="38515" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="38516" i_stop="38595" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38596" e_stop="38743" e_length="148"/>
          </exon>
          <intron i_serial="7" don_prob="0.939" acc_prob="0.271">
            <gDNA_intron_boundary i_start="38744" i_stop="42688" i_length="3945"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42689" e_stop="42801" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.647" acc_prob="0.768">
            <gDNA_intron_boundary i_start="42802" i_stop="42886" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="42887" e_stop="42962" e_length="76"/>
          </exon>
          <intron i_serial="9" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42963" i_stop="43909" i_length="947"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="43910" e_stop="43981" e_length="72"/>
          </exon>
          <intron i_serial="10" don_prob="0.924" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43982" i_stop="44438" i_length="457"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="44439" e_stop="44490" e_length="52"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.890">
            <gDNA_intron_boundary i_start="44491" i_stop="45081" i_length="591"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="45082" e_stop="45162" e_length="81"/>
          </exon>
          <intron i_serial="12" don_prob="0.489" acc_prob="0.620">
            <gDNA_intron_boundary i_start="45163" i_stop="45246" i_length="84"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="45247" e_stop="45330" e_length="84"/>
          </exon>
          <intron i_serial="13" don_prob="0.974" acc_prob="0.755">
            <gDNA_intron_boundary i_start="45331" i_stop="45496" i_length="166"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="45497" e_stop="45600" e_length="104"/>
          </exon>
          <intron i_serial="14" don_prob="0.932" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45601" i_stop="45684" i_length="84"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="45685" e_stop="45777" e_length="93"/>
          </exon>
          <intron i_serial="15" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45778" i_stop="46659" i_length="882"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="46660" e_stop="46728" e_length="69"/>
          </exon>
          <intron i_serial="16" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46729" i_stop="47325" i_length="597"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="47326" e_stop="47390" e_length="65"/>
          </exon>
          <intron i_serial="17" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="47391" i_stop="47748" i_length="358"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="47749" e_stop="47810" e_length="62"/>
          </exon>
          <intron i_serial="18" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47811" i_stop="48223" i_length="413"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="48224" e_stop="48319" e_length="96"/>
          </exon>
          <intron i_serial="19" don_prob="0.895" acc_prob="0.995">
            <gDNA_intron_boundary i_start="48320" i_stop="48405" i_length="86"/>
          </intron>
          <exon e_serial="20" e_score="0.996">
            <gDNA_exon_boundary e_start="48406" e_stop="48660" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36911" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36920" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38200"/>
              <exon start="38438" stop="38515"/>
              <exon start="38596" stop="38743"/>
              <exon start="42689" stop="42801"/>
              <exon start="42887" stop="42962"/>
              <exon start="43910" stop="43981"/>
              <exon start="44439" stop="44490"/>
              <exon start="45082" stop="45162"/>
              <exon start="45247" stop="45330"/>
              <exon start="45497" stop="45600"/>
              <exon start="45685" stop="45777"/>
              <exon start="46660" stop="46728"/>
              <exon start="47326" stop="47390"/>
              <exon start="47749" stop="47810"/>
              <exon start="48224" stop="48319"/>
              <exon start="48406" stop="48642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36935" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="37853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36936" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38200"/>
              <exon start="38438" stop="38502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36937" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38200"/>
              <exon start="38438" stop="38515"/>
              <exon start="38596" stop="38654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36937" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36937" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37144" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38200"/>
              <exon start="38438" stop="38515"/>
              <exon start="38596" stop="38743"/>
              <exon start="42689" stop="42774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38641" stop="38743"/>
              <exon start="42689" stop="42801"/>
              <exon start="42887" stop="42962"/>
              <exon start="43910" stop="43981"/>
              <exon start="44439" stop="44490"/>
              <exon start="45082" stop="45162"/>
              <exon start="45247" stop="45290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42705" stop="42801"/>
              <exon start="42887" stop="42962"/>
              <exon start="43910" stop="43981"/>
              <exon start="44439" stop="44490"/>
              <exon start="45082" stop="45162"/>
              <exon start="45247" stop="45330"/>
              <exon start="45497" stop="45600"/>
              <exon start="45685" stop="45764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42737" stop="42801"/>
              <exon start="42887" stop="42962"/>
              <exon start="43910" stop="43981"/>
              <exon start="44439" stop="44490"/>
              <exon start="45082" stop="45162"/>
              <exon start="45247" stop="45330"/>
              <exon start="45497" stop="45600"/>
              <exon start="45685" stop="45777"/>
              <exon start="46660" stop="46728"/>
              <exon start="47326" stop="47390"/>
              <exon start="47749" stop="47810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43935" stop="43981"/>
              <exon start="44439" stop="44490"/>
              <exon start="45082" stop="45162"/>
              <exon start="45247" stop="45330"/>
              <exon start="45497" stop="45600"/>
              <exon start="45685" stop="45754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43936" stop="43981"/>
              <exon start="44439" stop="44490"/>
              <exon start="45082" stop="45162"/>
              <exon start="45247" stop="45330"/>
              <exon start="45497" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45088" stop="45162"/>
              <exon start="45247" stop="45330"/>
              <exon start="45497" stop="45600"/>
              <exon start="45685" stop="45777"/>
              <exon start="46660" stop="46728"/>
              <exon start="47326" stop="47357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47352" stop="47390"/>
              <exon start="47749" stop="47810"/>
              <exon start="48224" stop="48319"/>
              <exon start="48406" stop="48660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47752" stop="47810"/>
              <exon start="48224" stop="48319"/>
              <exon start="48406" stop="48660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTCTTTGATTGTATCTGCTGTGTTTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAG : CTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAG : ATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAG : AGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATG : GTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGACCCCGAGGAAGTGAGAAGGCAAGCGGCAGCTTCCACTCAAAGATTTGAGAAAG : GAAAACAACTGTCAATCTTGGAAGGGATTTTCATTGCAGTCAAGGATGACATTGATTGCTATCCTCATCCTTCAAAAG : GTGGTTCTAAATGGTTTCATGAGGTTCGCCAGGTGAAGGCAGATGGGGTTCCTGTGTCAAGATTACGAAACAATGGTGCAATTTTAGTAGGAAAGACAAATATGCATGAGTTTGGTATGGGCACAACAGGAAATAATCCAAATTATGG : TACACCTAGAAATCCGCATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAG : GTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGG : GTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGT : GTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCT : TCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAG : TGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAA : ACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGG : GAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGACTATATATCTGCCCAGTGTCTTAG : GCGAAGGATAATGTACTACCATATGGAGATTTTCAAGAAAGTAGATGTCATTGTAACACCTACCACTGG : AATGACAGCCCCAGAAATTCCAGAAAGTGCTCTTGCAGTTGGAGAGACAAATTTGCAAGTTGTAG : CAAGACTAATGCAATTTGCTATGACAGCAAATGTTCTTGGACTTCCGGCAATTTCTGTCCCT : ATTGGTCATGATAAGCAAGGACTTCCAATAGGCTTGCAACTTATTGGTCGTCCGTGGTGTGAAGCTTCAATCTTGCGTTTAGCTGTTGCAGTTGAG : GAAATGTCTGCAGAATATAGGAAGAAGCCAGTGGAGTTCTATGACATCTTGAAAGGGAACGGTTTTCACGACTCCACTGAGGAATAAGTTTTAAGCCTAACCTCAAAGAGAAAACAAGATTTTATCACAGTGTGCTTAGCGTTTTTGTGTTTTGTATCTCTTTTAAAATAGCAGTTAAATTTCTTTTTTGGCCATGAAACTCACGCACATCTTGTTTGTATAACTTTGTTCTTAATTATCTCACTCTTACCATAG</gDNA_template>
            <first_frame> F  F  F  D  C  I  C  C  V  F  V  Q  Y  K  N  C  D  *  K  M  V  K  K  Q  V  M  L  P  A  N  E  V  D  L  T  A  V  E  Y  L  P  E  K  I  E   : A  P  H  L  T  G  F  W  F  K  L  F  V  K  V  I  E  A  P  V  I  G  S  F  I  A  S  H  L  K  E  K  N  G  I  T  E  :  I  L  K  N  T  V  I  P  E  V  P  M  F  I  P  Q  F  P  L  Q   : E  Q  E  P  G  V  V  C  L  G  E  D  G  K  P  K  E  Q  V  D  L  A  F  K  Y  L  P  H  Y  D  P  A  S  R  W  S  S  D  S  G  E  S  S  Q  F  R  C  W  K  I  R  D  Y  E  Y  A  Y  R  N  K  L  T  T  P  S  M  :  V  A  E  H  F  I  S  A  M  E  V  F  N  S  K  Q  P  S  A  P  L  L  I  S  F  D  P  E  E  V  R  R  Q  A  A  A  S  T  Q  R  F  E  K   : G  K  Q  L  S  I  L  E  G  I  F  I  A  V  K  D  D  I  D  C  Y  P  H  P  S  K   : G  G  S  K  W  F  H  E  V  R  Q  V  K  A  D  G  V  P  V  S  R  L  R  N  N  G  A  I  L  V  G  K  T  N  M  H  E  F  G  M  G  T  T  G  N  N  P  N  Y  G :   T  P  R  N  P  H  N  P  K  R  Y  T  G  G  S  S  S  G  S  A  A  I  V  A  S  G  L  C  S  A  A  L  G  T  D  A  G   : G  S  V  R  I  P  A  S  L  C  G  V  V  G  L  K  T  T  F  G  R  T  D  L  T  G :   S  L  W  E  A  G  T  V  T  I  I  G  P  I  T  A  T  V  E  D  A  I  L  V :   Y  A  A  I  S  G  S  S  P  T  D  R  I  Q  L  N  P  :  S  I  P  N  F  P  D  L  S  S  S  E  S  S  N  I  L  G  S  L  T  L  G  K  Y  T  K  :  W  F  N  D  V  S  S  T  D  I  S  D  K  C  E  D  V  L  N  Q  L  F  R  R  Y  G  C  K  :  T  T  E  I  V  I  P  E  L  R  E  L  R  T  A  H  T  V  T  F  G  S  E  S  L  S  F  L  N  P  D  C  E  A  G :   K  G  V  R  L  T  N  D  T  R  T  N  L  A  L  F  R  S  F  A  A  S  D  Y  I  S  A  Q  C  L  R :   R  R  I  M  Y  Y  H  M  E  I  F  K  K  V  D  V  I  V  T  P  T  T  G :   M  T  A  P  E  I  P  E  S  A  L  A  V  G  E  T  N  L  Q  V  V   : A  R  L  M  Q  F  A  M  T  A  N  V  L  G  L  P  A  I  S  V  P  :  I  G  H  D  K  Q  G  L  P  I  G  L  Q  L  I  G  R  P  W  C  E  A  S  I  L  R  L  A  V  A  V  E  :  E  M  S  A  E  Y  R  K  K  P  V  E  F  Y  D  I  L  K  G  N  G  F  H  D  S  T  E  E  *  V  L  S  L  T  S  K  R  K  Q  D  F  I  T  V  C  L  A  F  L  C  F  V  S  L  L  K  *  Q  L  N  F  F  F  G  H  E  T  H  A  H  L  V  C  I  T  L  F  L  I  I  S  L  L  P  * </first_frame>
            <second_frame>  F  S  L  I  V  S  A  V  F  L  Y  S  T  K  I  V  T  E  K  W  *  K  N  K  *  C  C  R  R  M  K  *  T  L  L  P  S  N  I  Y  P  K  K  L  K  :  L  H  I  *  R  G  F  G  S  S  C  L  L  K  *  S  R  H  L  *  L  V  L  L  L  L  V  I  *  R  R  R  M  G  L  L  R :   F  *  R  I  L  *  Y  Q  R  F  P  C  S  F  P  S  S  L  F  K  :  S  K  S  L  V  L  F  A  *  E  K  M  E  N  L  K  N  R  L  I  *  H  L  S  I  F  H  I  M  I  L  L  V  D  G  V  L  I  Q  E  N  H  P  N  S  A  A  G  K  F  V  I  M  N  M  H  T  E  I  S  L  R  P  H  P  W :   L  Q  S  T  L  S  Q  Q  W  R  Y  L  I  V  S  S  H  Q  H  H  Y  *  S  H  L  T  P  R  K  *  E  G  K  R  Q  L  P  L  K  D  L  R  K  :  E  N  N  C  Q  S  W  K  G  F  S  L  Q  S  R  M  T  L  I  A  I  L  I  L  Q  K  :  V  V  L  N  G  F  M  R  F  A  R  *  R  Q  M  G  F  L  C  Q  D  Y  E  T  M  V  Q  F  *  *  E  R  Q  I  C  M  S  L  V  W  A  Q  Q  E  I  I  Q  I  M   : V  H  L  E  I  R  I  I  Q  K  G  T  Q  V  V  L  P  Q  V  Q  L  Q  L  S  L  L  D  C  A  Q  Q  H  W  E  Q  M  L  E  :  V  Q  Y  E  F  L  L  L  F  A  G  L  W  A  *  K  Q  H  L  D  G  L  T  *  Q   : G  L  C  G  K  Q  E  L  S  Q  L  L  D  P  S  Q  L  L  L  R  M  P  Y  L   : C  M  Q  Q  S  R  D  P  L  Q  L  I  E  F  S  *  I  L :   P  S  L  I  F  P  I  Y  L  P  V  R  V  Q  I  S  W  D  H  L  P  W  E  S  I  Q  S :   G  L  T  M  L  A  R  P  T  Y  L  I  S  V  K  M  S  *  T  N  Y  F  V  G  M  G  A  K :   Q  Q  R  L  S  Y  R  S  F  V  S  C  A  Q  L  I  L  L  L  L  D  L  N  H  C  P  F  *  I  L  I  A  R  L   : G  K  E  L  D  *  L  M  T  L  A  Q  I  W  H  F  S  D  H  L  Q  H  L  T  I  Y  L  P  S  V  L   : G  E  G  *  C  T  T  I  W  R  F  S  R  K  *  M  S  L  *  H  L  P  L   : E  *  Q  P  Q  K  F  Q  K  V  L  L  Q  L  E  R  Q  I  C  K  L  *  :  Q  D  *  C  N  L  L  *  Q  Q  M  F  L  D  F  R  Q  F  L  S  L :   L  V  M  I  S  K  D  F  Q  *  A  C  N  L  L  V  V  R  G  V  K  L  Q  S  C  V  *  L  L  Q  L  R :   K  C  L  Q  N  I  G  R  S  Q  W  S  S  M  T  S  *  K  G  T  V  F  T  T  P  L  R  N  K  F  *  A  *  P  Q  R  E  N  K  I  L  S  Q  C  A  *  R  F  C  V  L  Y  L  F  *  N  S  S  *  I  S  F  L  A  M  K  L  T  H  I  L  F  V  *  L  C  S  *  L  S  H  S  Y  H   </second_frame>
            <third_frame>   F  L  *  L  Y  L  L  C  F  C  T  V  Q  K  L  *  L  K  N  G  E  K  T  S  N  A  A  G  E  *  S  R  P  Y  C  R  R  I  F  T  R  K  N  *  S :   S  T  F  D  G  V  L  V  Q  V  V  C  *  S  N  R  G  T  C  N  W  F  F  Y  C  *  S  S  E  G  E  E  W  D  Y  *   : D  S  E  E  Y  C  D  T  R  G  S  H  V  H  S  P  V  P  S  S  R :   A  R  A  W  C  C  L  L  R  R  R  W  K  T  *  R  T  G  *  F  S  I  *  V  S  S  T  L  *  S  C  *  *  M  E  F  *  F  R  R  I  I  P  I  P  L  L  E  N  S  *  L  *  I  C  I  Q  K  *  A  Y  D  P  I  H   : G  C  R  A  L  Y  L  S  N  G  G  I  *  *  *  A  A  I  S  T  I  I  D  L  I  *  P  R  G  S  E  K  A  S  G  S  F  H  S  K  I  *  E  R :   K  T  T  V  N  L  G  R  D  F  H  C  S  Q  G  *  H  *  L  L  S  S  S  F  K  R :   W  F  *  M  V  S  *  G  S  P  G  E  G  R  W  G  S  C  V  K  I  T  K  Q  W  C  N  F  S  R  K  D  K  Y  A  *  V  W  Y  G  H  N  R  K  *  S  K  L  W  :  Y  T  *  K  S  A  *  S  K  K  V  H  R  W  F  F  L  R  F  S  C  N  C  R  F  W  I  V  L  S  S  I  G  N  R  C  W  R :   F  S  T  N  S  C  F  S  L  R  G  C  G  L  K  N  N  I  W  T  D  *  P  D  R  :  V  F  V  G  S  R  N  C  H  N  Y  W  T  H  H  S  Y  C  *  G  C  H  T  C  :  V  C  S  N  L  G  I  L  S  N  *  S  N  S  A  E  S   : F  H  P  *  F  S  R  F  I  F  Q  *  E  F  K  Y  L  G  I  T  Y  L  G  K  V  Y  K   : V  V  *  R  C  *  L  D  R  H  I  *  *  V  *  R  C  P  K  P  T  I  S  S  V  W  V  Q   : N  N  R  D  C  H  T  G  A  S  *  A  A  H  S  S  Y  C  Y  F  W  I  *  I  T  V  L  F  E  S  *  L  R  G  W  :  E  R  S  *  I  D  *  *  H  S  H  K  S  G  T  F  Q  I  I  C  S  I  *  L  Y  I  C  P  V  S  *  :  A  K  D  N  V  L  P  Y  G  D  F  Q  E  S  R  C  H  C  N  T  Y  H  W  :  N  D  S  P  R  N  S  R  K  C  S  C  S  W  R  D  K  F  A  S  C  S :   K  T  N  A  I  C  Y  D  S  K  C  S  W  T  S  G  N  F  C  P   : Y  W  S  *  *  A  R  T  S  N  R  L  A  T  Y  W  S  S  V  V  *  S  F  N  L  A  F  S  C  C  S  *   : G  N  V  C  R  I  *  E  E  A  S  G  V  L  *  H  L  E  R  E  R  F  S  R  L  H  *  G  I  S  F  K  P  N  L  K  E  K  T  R  F  Y  H  S  V  L  S  V  F  V  F  C  I  S  F  K  I  A  V  K  F  L  F  W  P  *  N  S  R  T  S  C  L  Y  N  F  V  L  N  Y  L  T  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36965" stop="37046"/>
                    <exon start="37139" stop="37248"/>
                    <exon start="37323" stop="37383"/>
                    <exon start="37804" stop="38000"/>
                    <exon start="38071" stop="38200"/>
                    <exon start="38438" stop="38515"/>
                    <exon start="38596" stop="38743"/>
                    <exon start="42689" stop="42801"/>
                    <exon start="42887" stop="42962"/>
                    <exon start="43910" stop="43981"/>
                    <exon start="44439" stop="44490"/>
                    <exon start="45082" stop="45162"/>
                    <exon start="45247" stop="45330"/>
                    <exon start="45497" stop="45600"/>
                    <exon start="45685" stop="45777"/>
                    <exon start="46660" stop="46728"/>
                    <exon start="47326" stop="47390"/>
                    <exon start="47749" stop="47810"/>
                    <exon start="48224" stop="48319"/>
                    <exon start="48406" stop="48492"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1857</number_coding_nucleotides>
                  <number_encoded_amino_acids>619</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVKKQVMLPANEVDLTAVEYLPEKIEAPHLTGFWFKLFVKVIEAPVIGSFIASHLKEKNGITEILKNTVIPEVPMFIPQFPLQEQEPGVVCLGEDGKPKEQVDLAFKYLPHYDPASRWSSDSGESSQFRCWKIRDYEYAYRNKLTTPSMVAEHFISAMEVFNSKQPSAPLLISFDPEEVRRQAAASTQRFEKGKQLSILEGIFIAVKDDIDCYPHPSKGGSKWFHEVRQVKADGVPVSRLRNNGAILVGKTNMHEFGMGTTGNNPNYGTPRNPHNPKRYTGGSSSGSAAIVASGLCSAALGTDAGGSVRIPASLCGVVGLKTTFGRTDLTGSLWEAGTVTIIGPITATVEDAILVYAAISGSSPTDRIQLNPSIPNFPDLSSSESSNILGSLTLGKYTKWFNDVSSTDISDKCEDVLNQLFRRYGCKTTEIVIPELRELRTAHTVTFGSESLSFLNPDCEAGKGVRLTNDTRTNLALFRSFAASDYISAQCLRRRIMYYHMEIFKKVDVIVTPTTGMTAPEIPESALAVGETNLQVVARLMQFAMTANVLGLPAISVPIGHDKQGLPIGLQLIGRPWCEASILRLAVAVEEMSAEYRKKPVEFYDILKGNGFHDSTEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36911" e_stop="37046"/>
            <exon e_start="37139" e_stop="37248"/>
            <exon e_start="37323" e_stop="37383"/>
            <exon e_start="37804" e_stop="38000"/>
            <exon e_start="38071" e_stop="38200"/>
            <exon e_start="38438" e_stop="38515"/>
            <exon e_start="38596" e_stop="38743"/>
            <exon e_start="42689" e_stop="42801"/>
            <exon e_start="42887" e_stop="42962"/>
            <exon e_start="43910" e_stop="44049"/>
            <exon e_start="44439" e_stop="44490"/>
            <exon e_start="45082" e_stop="45162"/>
            <exon e_start="45247" e_stop="45330"/>
            <exon e_start="45497" e_stop="45600"/>
            <exon e_start="45685" e_stop="45777"/>
            <exon e_start="46660" e_stop="46728"/>
            <exon e_start="47326" e_stop="47390"/>
            <exon e_start="47749" e_stop="47810"/>
            <exon e_start="48224" e_stop="48319"/>
            <exon e_start="48406" e_stop="48660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.796" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.387" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.271" e_score="1.000"/>
          <exon-intron don_prob="0.647" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.489" acc_prob="0.620" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.755" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="0.989"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36911" e_stop="37046" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.796" acc_prob="0.978">
            <gDNA_intron_boundary i_start="37047" i_stop="37138" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37139" e_stop="37248" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.910" acc_prob="0.915">
            <gDNA_intron_boundary i_start="37249" i_stop="37322" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37323" e_stop="37383" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="37384" i_stop="37803" i_length="420"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37804" e_stop="38000" e_length="197"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.882">
            <gDNA_intron_boundary i_start="38001" i_stop="38070" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38071" e_stop="38200" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.387">
            <gDNA_intron_boundary i_start="38201" i_stop="38437" i_length="237"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38438" e_stop="38515" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="38516" i_stop="38595" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38596" e_stop="38743" e_length="148"/>
          </exon>
          <intron i_serial="7" don_prob="0.939" acc_prob="0.271">
            <gDNA_intron_boundary i_start="38744" i_stop="42688" i_length="3945"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42689" e_stop="42801" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.647" acc_prob="0.768">
            <gDNA_intron_boundary i_start="42802" i_stop="42886" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="42887" e_stop="42962" e_length="76"/>
          </exon>
          <intron i_serial="9" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42963" i_stop="43909" i_length="947"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="43910" e_stop="44049" e_length="140"/>
          </exon>
          <intron i_serial="10" don_prob="0.902" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44050" i_stop="44438" i_length="389"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="44439" e_stop="44490" e_length="52"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.890">
            <gDNA_intron_boundary i_start="44491" i_stop="45081" i_length="591"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="45082" e_stop="45162" e_length="81"/>
          </exon>
          <intron i_serial="12" don_prob="0.489" acc_prob="0.620">
            <gDNA_intron_boundary i_start="45163" i_stop="45246" i_length="84"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="45247" e_stop="45330" e_length="84"/>
          </exon>
          <intron i_serial="13" don_prob="0.974" acc_prob="0.755">
            <gDNA_intron_boundary i_start="45331" i_stop="45496" i_length="166"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="45497" e_stop="45600" e_length="104"/>
          </exon>
          <intron i_serial="14" don_prob="0.932" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45601" i_stop="45684" i_length="84"/>
          </intron>
          <exon e_serial="15" e_score="0.989">
            <gDNA_exon_boundary e_start="45685" e_stop="45777" e_length="93"/>
          </exon>
          <intron i_serial="15" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45778" i_stop="46659" i_length="882"/>
          </intron>
          <exon e_serial="16" e_score="0.986">
            <gDNA_exon_boundary e_start="46660" e_stop="46728" e_length="69"/>
          </exon>
          <intron i_serial="16" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46729" i_stop="47325" i_length="597"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="47326" e_stop="47390" e_length="65"/>
          </exon>
          <intron i_serial="17" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="47391" i_stop="47748" i_length="358"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="47749" e_stop="47810" e_length="62"/>
          </exon>
          <intron i_serial="18" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47811" i_stop="48223" i_length="413"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="48224" e_stop="48319" e_length="96"/>
          </exon>
          <intron i_serial="19" don_prob="0.895" acc_prob="0.995">
            <gDNA_intron_boundary i_start="48320" i_stop="48405" i_length="86"/>
          </intron>
          <exon e_serial="20" e_score="0.992">
            <gDNA_exon_boundary e_start="48406" e_stop="48660" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36911" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36935" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="37853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36936" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38200"/>
              <exon start="38438" stop="38502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36937" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38200"/>
              <exon start="38438" stop="38515"/>
              <exon start="38596" stop="38654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36937" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36937" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37144" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38200"/>
              <exon start="38438" stop="38515"/>
              <exon start="38596" stop="38743"/>
              <exon start="42689" stop="42774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42698" stop="42801"/>
              <exon start="42887" stop="42962"/>
              <exon start="43910" stop="44049"/>
              <exon start="44439" stop="44490"/>
              <exon start="45082" stop="45162"/>
              <exon start="45247" stop="45330"/>
              <exon start="45497" stop="45588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45088" stop="45162"/>
              <exon start="45247" stop="45330"/>
              <exon start="45497" stop="45600"/>
              <exon start="45685" stop="45777"/>
              <exon start="46660" stop="46728"/>
              <exon start="47326" stop="47357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47352" stop="47390"/>
              <exon start="47749" stop="47810"/>
              <exon start="48224" stop="48319"/>
              <exon start="48406" stop="48660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47752" stop="47810"/>
              <exon start="48224" stop="48319"/>
              <exon start="48406" stop="48660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTCTTTGATTGTATCTGCTGTGTTTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAG : CTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAG : ATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAG : AGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATG : GTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGACCCCGAGGAAGTGAGAAGGCAAGCGGCAGCTTCCACTCAAAGATTTGAGAAAG : GAAAACAACTGTCAATCTTGGAAGGGATTTTCATTGCAGTCAAGGATGACATTGATTGCTATCCTCATCCTTCAAAAG : GTGGTTCTAAATGGTTTCATGAGGTTCGCCAGGTGAAGGCAGATGGGGTTCCTGTGTCAAGATTACGAAACAATGGTGCAATTTTAGTAGGAAAGACAAATATGCATGAGTTTGGTATGGGCACAACAGGAAATAATCCAAATTATGG : TACACCTAGAAATCCGCATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAG : GTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGG : GTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGTGTTAGTAATTGGGTTTACTGCCCATTTCCTTACAAACAAATAGTCAATTCTGGTCATGAAAATCTCTG : GTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCT : TCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAG : TGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAA : ACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGG : GAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGACTATATATCTGCCCAGTGTCTTAG : GCGAAGGATAATGTACTACCATATGGAGATTTTCAAGAAAGTAGATGTCATTGTAACACCTACCACTGG : AATGACAGCCCCAGAAATTCCAGAAAGTGCTCTTGCAGTTGGAGAGACAAATTTGCAAGTTGTAG : CAAGACTAATGCAATTTGCTATGACAGCAAATGTTCTTGGACTTCCGGCAATTTCTGTCCCT : ATTGGTCATGATAAGCAAGGACTTCCAATAGGCTTGCAACTTATTGGTCGTCCGTGGTGTGAAGCTTCAATCTTGCGTTTAGCTGTTGCAGTTGAG : GAAATGTCTGCAGAATATAGGAAGAAGCCAGTGGAGTTCTATGACATCTTGAAAGGGAACGGTTTTCACGACTCCACTGAGGAATAAGTTTTAAGCCTAACCTCAAAGAGAAAACAAGATTTTATCACAGTGTGCTTAGCGTTTTTGTGTTTTGTATCTCTTTTAAAATAGCAGTTAAATTTCTTTTTTGGCCATGAAACTCACGCACATCTTGTTTGTATAACTTTGTTCTTAATTATCTCACTCTTACCATAG</gDNA_template>
            <first_frame> F  F  F  D  C  I  C  C  V  F  V  Q  Y  K  N  C  D  *  K  M  V  K  K  Q  V  M  L  P  A  N  E  V  D  L  T  A  V  E  Y  L  P  E  K  I  E   : A  P  H  L  T  G  F  W  F  K  L  F  V  K  V  I  E  A  P  V  I  G  S  F  I  A  S  H  L  K  E  K  N  G  I  T  E  :  I  L  K  N  T  V  I  P  E  V  P  M  F  I  P  Q  F  P  L  Q   : E  Q  E  P  G  V  V  C  L  G  E  D  G  K  P  K  E  Q  V  D  L  A  F  K  Y  L  P  H  Y  D  P  A  S  R  W  S  S  D  S  G  E  S  S  Q  F  R  C  W  K  I  R  D  Y  E  Y  A  Y  R  N  K  L  T  T  P  S  M  :  V  A  E  H  F  I  S  A  M  E  V  F  N  S  K  Q  P  S  A  P  L  L  I  S  F  D  P  E  E  V  R  R  Q  A  A  A  S  T  Q  R  F  E  K   : G  K  Q  L  S  I  L  E  G  I  F  I  A  V  K  D  D  I  D  C  Y  P  H  P  S  K   : G  G  S  K  W  F  H  E  V  R  Q  V  K  A  D  G  V  P  V  S  R  L  R  N  N  G  A  I  L  V  G  K  T  N  M  H  E  F  G  M  G  T  T  G  N  N  P  N  Y  G :   T  P  R  N  P  H  N  P  K  R  Y  T  G  G  S  S  S  G  S  A  A  I  V  A  S  G  L  C  S  A  A  L  G  T  D  A  G   : G  S  V  R  I  P  A  S  L  C  G  V  V  G  L  K  T  T  F  G  R  T  D  L  T  G :   S  L  W  E  A  G  T  V  T  I  I  G  P  I  T  A  T  V  E  D  A  I  L  V  L  V  I  G  F  T  A  H  F  L  T  N  K  *  S  I  L  V  M  K  I  S   : G  M  Q  Q  S  R  D  P  L  Q  L  I  E  F  S  *  I  L :   P  S  L  I  F  P  I  Y  L  P  V  R  V  Q  I  S  W  D  H  L  P  W  E  S  I  Q  S :   G  L  T  M  L  A  R  P  T  Y  L  I  S  V  K  M  S  *  T  N  Y  F  V  G  M  G  A  K :   Q  Q  R  L  S  Y  R  S  F  V  S  C  A  Q  L  I  L  L  L  L  D  L  N  H  C  P  F  *  I  L  I  A  R  L   : G  K  E  L  D  *  L  M  T  L  A  Q  I  W  H  F  S  D  H  L  Q  H  L  T  I  Y  L  P  S  V  L   : G  E  G  *  C  T  T  I  W  R  F  S  R  K  *  M  S  L  *  H  L  P  L   : E  *  Q  P  Q  K  F  Q  K  V  L  L  Q  L  E  R  Q  I  C  K  L  *  :  Q  D  *  C  N  L  L  *  Q  Q  M  F  L  D  F  R  Q  F  L  S  L :   L  V  M  I  S  K  D  F  Q  *  A  C  N  L  L  V  V  R  G  V  K  L  Q  S  C  V  *  L  L  Q  L  R :   K  C  L  Q  N  I  G  R  S  Q  W  S  S  M  T  S  *  K  G  T  V  F  T  T  P  L  R  N  K  F  *  A  *  P  Q  R  E  N  K  I  L  S  Q  C  A  *  R  F  C  V  L  Y  L  F  *  N  S  S  *  I  S  F  L  A  M  K  L  T  H  I  L  F  V  *  L  C  S  *  L  S  H  S  Y  H   </first_frame>
            <second_frame>  F  S  L  I  V  S  A  V  F  L  Y  S  T  K  I  V  T  E  K  W  *  K  N  K  *  C  C  R  R  M  K  *  T  L  L  P  S  N  I  Y  P  K  K  L  K  :  L  H  I  *  R  G  F  G  S  S  C  L  L  K  *  S  R  H  L  *  L  V  L  L  L  L  V  I  *  R  R  R  M  G  L  L  R :   F  *  R  I  L  *  Y  Q  R  F  P  C  S  F  P  S  S  L  F  K  :  S  K  S  L  V  L  F  A  *  E  K  M  E  N  L  K  N  R  L  I  *  H  L  S  I  F  H  I  M  I  L  L  V  D  G  V  L  I  Q  E  N  H  P  N  S  A  A  G  K  F  V  I  M  N  M  H  T  E  I  S  L  R  P  H  P  W :   L  Q  S  T  L  S  Q  Q  W  R  Y  L  I  V  S  S  H  Q  H  H  Y  *  S  H  L  T  P  R  K  *  E  G  K  R  Q  L  P  L  K  D  L  R  K  :  E  N  N  C  Q  S  W  K  G  F  S  L  Q  S  R  M  T  L  I  A  I  L  I  L  Q  K  :  V  V  L  N  G  F  M  R  F  A  R  *  R  Q  M  G  F  L  C  Q  D  Y  E  T  M  V  Q  F  *  *  E  R  Q  I  C  M  S  L  V  W  A  Q  Q  E  I  I  Q  I  M   : V  H  L  E  I  R  I  I  Q  K  G  T  Q  V  V  L  P  Q  V  Q  L  Q  L  S  L  L  D  C  A  Q  Q  H  W  E  Q  M  L  E  :  V  Q  Y  E  F  L  L  L  F  A  G  L  W  A  *  K  Q  H  L  D  G  L  T  *  Q   : G  L  C  G  K  Q  E  L  S  Q  L  L  D  P  S  Q  L  L  L  R  M  P  Y  L  C  *  *  L  G  L  L  P  I  S  L  Q  T  N  S  Q  F  W  S  *  K  S  L  :  V  C  S  N  L  G  I  L  S  N  *  S  N  S  A  E  S   : F  H  P  *  F  S  R  F  I  F  Q  *  E  F  K  Y  L  G  I  T  Y  L  G  K  V  Y  K   : V  V  *  R  C  *  L  D  R  H  I  *  *  V  *  R  C  P  K  P  T  I  S  S  V  W  V  Q   : N  N  R  D  C  H  T  G  A  S  *  A  A  H  S  S  Y  C  Y  F  W  I  *  I  T  V  L  F  E  S  *  L  R  G  W  :  E  R  S  *  I  D  *  *  H  S  H  K  S  G  T  F  Q  I  I  C  S  I  *  L  Y  I  C  P  V  S  *  :  A  K  D  N  V  L  P  Y  G  D  F  Q  E  S  R  C  H  C  N  T  Y  H  W  :  N  D  S  P  R  N  S  R  K  C  S  C  S  W  R  D  K  F  A  S  C  S :   K  T  N  A  I  C  Y  D  S  K  C  S  W  T  S  G  N  F  C  P   : Y  W  S  *  *  A  R  T  S  N  R  L  A  T  Y  W  S  S  V  V  *  S  F  N  L  A  F  S  C  C  S  *   : G  N  V  C  R  I  *  E  E  A  S  G  V  L  *  H  L  E  R  E  R  F  S  R  L  H  *  G  I  S  F  K  P  N  L  K  E  K  T  R  F  Y  H  S  V  L  S  V  F  V  F  C  I  S  F  K  I  A  V  K  F  L  F  W  P  *  N  S  R  T  S  C  L  Y  N  F  V  L  N  Y  L  T  L  T  I  </second_frame>
            <third_frame>   F  L  *  L  Y  L  L  C  F  C  T  V  Q  K  L  *  L  K  N  G  E  K  T  S  N  A  A  G  E  *  S  R  P  Y  C  R  R  I  F  T  R  K  N  *  S :   S  T  F  D  G  V  L  V  Q  V  V  C  *  S  N  R  G  T  C  N  W  F  F  Y  C  *  S  S  E  G  E  E  W  D  Y  *   : D  S  E  E  Y  C  D  T  R  G  S  H  V  H  S  P  V  P  S  S  R :   A  R  A  W  C  C  L  L  R  R  R  W  K  T  *  R  T  G  *  F  S  I  *  V  S  S  T  L  *  S  C  *  *  M  E  F  *  F  R  R  I  I  P  I  P  L  L  E  N  S  *  L  *  I  C  I  Q  K  *  A  Y  D  P  I  H   : G  C  R  A  L  Y  L  S  N  G  G  I  *  *  *  A  A  I  S  T  I  I  D  L  I  *  P  R  G  S  E  K  A  S  G  S  F  H  S  K  I  *  E  R :   K  T  T  V  N  L  G  R  D  F  H  C  S  Q  G  *  H  *  L  L  S  S  S  F  K  R :   W  F  *  M  V  S  *  G  S  P  G  E  G  R  W  G  S  C  V  K  I  T  K  Q  W  C  N  F  S  R  K  D  K  Y  A  *  V  W  Y  G  H  N  R  K  *  S  K  L  W  :  Y  T  *  K  S  A  *  S  K  K  V  H  R  W  F  F  L  R  F  S  C  N  C  R  F  W  I  V  L  S  S  I  G  N  R  C  W  R :   F  S  T  N  S  C  F  S  L  R  G  C  G  L  K  N  N  I  W  T  D  *  P  D  R  :  V  F  V  G  S  R  N  C  H  N  Y  W  T  H  H  S  Y  C  *  G  C  H  T  C  V  S  N  W  V  Y  C  P  F  P  Y  K  Q  I  V  N  S  G  H  E  N  L  W :   Y  A  A  I  S  G  S  S  P  T  D  R  I  Q  L  N  P  :  S  I  P  N  F  P  D  L  S  S  S  E  S  S  N  I  L  G  S  L  T  L  G  K  Y  T  K  :  W  F  N  D  V  S  S  T  D  I  S  D  K  C  E  D  V  L  N  Q  L  F  R  R  Y  G  C  K  :  T  T  E  I  V  I  P  E  L  R  E  L  R  T  A  H  T  V  T  F  G  S  E  S  L  S  F  L  N  P  D  C  E  A  G :   K  G  V  R  L  T  N  D  T  R  T  N  L  A  L  F  R  S  F  A  A  S  D  Y  I  S  A  Q  C  L  R :   R  R  I  M  Y  Y  H  M  E  I  F  K  K  V  D  V  I  V  T  P  T  T  G :   M  T  A  P  E  I  P  E  S  A  L  A  V  G  E  T  N  L  Q  V  V   : A  R  L  M  Q  F  A  M  T  A  N  V  L  G  L  P  A  I  S  V  P  :  I  G  H  D  K  Q  G  L  P  I  G  L  Q  L  I  G  R  P  W  C  E  A  S  I  L  R  L  A  V  A  V  E  :  E  M  S  A  E  Y  R  K  K  P  V  E  F  Y  D  I  L  K  G  N  G  F  H  D  S  T  E  E  *  V  L  S  L  T  S  K  R  K  Q  D  F  I  T  V  C  L  A  F  L  C  F  V  S  L  L  K  *  Q  L  N  F  F  F  G  H  E  T  H  A  H  L  V  C  I  T  L  F  L  I  I  S  L  L  P  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36965" stop="37046"/>
                    <exon start="37139" stop="37248"/>
                    <exon start="37323" stop="37383"/>
                    <exon start="37804" stop="38000"/>
                    <exon start="38071" stop="38200"/>
                    <exon start="38438" stop="38515"/>
                    <exon start="38596" stop="38743"/>
                    <exon start="42689" stop="42801"/>
                    <exon start="42887" stop="42962"/>
                    <exon start="43910" stop="44024"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1107</number_coding_nucleotides>
                  <number_encoded_amino_acids>369</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVKKQVMLPANEVDLTAVEYLPEKIEAPHLTGFWFKLFVKVIEAPVIGSFIASHLKEKNGITEILKNTVIPEVPMFIPQFPLQEQEPGVVCLGEDGKPKEQVDLAFKYLPHYDPASRWSSDSGESSQFRCWKIRDYEYAYRNKLTTPSMVAEHFISAMEVFNSKQPSAPLLISFDPEEVRRQAAASTQRFEKGKQLSILEGIFIAVKDDIDCYPHPSKGGSKWFHEVRQVKADGVPVSRLRNNGAILVGKTNMHEFGMGTTGNNPNYGTPRNPHNPKRYTGGSSSGSAAIVASGLCSAALGTDAGGSVRIPASLCGVVGLKTTFGRTDLTGSLWEAGTVTIIGPITATVEDAILVLVIGFTAHFLTNK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46660" stop="46728"/>
                    <exon start="47326" stop="47390"/>
                    <exon start="47749" stop="47810"/>
                    <exon start="48224" stop="48234"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKDNVLPYGDFQESRCHCNTYHWNDSPRNSRKCSCSWRDKFASCSKTNAICYDSKCSWTSGNFCPYWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="36860" e_stop="36878"/>
            <exon e_start="36944" e_stop="37046"/>
            <exon e_start="37139" e_stop="37248"/>
            <exon e_start="37323" e_stop="37383"/>
            <exon e_start="37804" e_stop="38000"/>
            <exon e_start="38071" e_stop="38200"/>
            <exon e_start="38438" e_stop="38515"/>
            <exon e_start="38596" e_stop="38743"/>
            <exon e_start="42689" e_stop="42801"/>
            <exon e_start="42887" e_stop="42962"/>
            <exon e_start="43910" e_stop="43981"/>
            <exon e_start="44439" e_stop="44490"/>
            <exon e_start="45082" e_stop="45162"/>
            <exon e_start="45247" e_stop="45330"/>
            <exon e_start="45497" e_stop="45600"/>
            <exon e_start="45685" e_stop="45777"/>
            <exon e_start="46660" e_stop="46728"/>
            <exon e_start="47326" e_stop="47390"/>
            <exon e_start="47749" e_stop="47810"/>
            <exon e_start="48224" e_stop="48319"/>
            <exon e_start="48406" e_stop="48660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.637" acc_prob="0.000" e_score="0.895"/>
          <exon-intron don_prob="0.796" acc_prob="0.978" e_score="0.903"/>
          <exon-intron don_prob="0.910" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.387" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.271" e_score="1.000"/>
          <exon-intron don_prob="0.647" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.489" acc_prob="0.620" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.755" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.895">
            <gDNA_exon_boundary e_start="36860" e_stop="36878" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.637" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36879" i_stop="36943" i_length="65"/>
          </intron>
          <exon e_serial="2" e_score="0.903">
            <gDNA_exon_boundary e_start="36944" e_stop="37046" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.796" acc_prob="0.978">
            <gDNA_intron_boundary i_start="37047" i_stop="37138" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37139" e_stop="37248" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.910" acc_prob="0.915">
            <gDNA_intron_boundary i_start="37249" i_stop="37322" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37323" e_stop="37383" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="37384" i_stop="37803" i_length="420"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37804" e_stop="38000" e_length="197"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.882">
            <gDNA_intron_boundary i_start="38001" i_stop="38070" i_length="70"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38071" e_stop="38200" e_length="130"/>
          </exon>
          <intron i_serial="6" don_prob="0.942" acc_prob="0.387">
            <gDNA_intron_boundary i_start="38201" i_stop="38437" i_length="237"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38438" e_stop="38515" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="38516" i_stop="38595" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="38596" e_stop="38743" e_length="148"/>
          </exon>
          <intron i_serial="8" don_prob="0.939" acc_prob="0.271">
            <gDNA_intron_boundary i_start="38744" i_stop="42688" i_length="3945"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="42689" e_stop="42801" e_length="113"/>
          </exon>
          <intron i_serial="9" don_prob="0.647" acc_prob="0.768">
            <gDNA_intron_boundary i_start="42802" i_stop="42886" i_length="85"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="42887" e_stop="42962" e_length="76"/>
          </exon>
          <intron i_serial="10" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42963" i_stop="43909" i_length="947"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="43910" e_stop="43981" e_length="72"/>
          </exon>
          <intron i_serial="11" don_prob="0.924" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43982" i_stop="44438" i_length="457"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="44439" e_stop="44490" e_length="52"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.890">
            <gDNA_intron_boundary i_start="44491" i_stop="45081" i_length="591"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="45082" e_stop="45162" e_length="81"/>
          </exon>
          <intron i_serial="13" don_prob="0.489" acc_prob="0.620">
            <gDNA_intron_boundary i_start="45163" i_stop="45246" i_length="84"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="45247" e_stop="45330" e_length="84"/>
          </exon>
          <intron i_serial="14" don_prob="0.974" acc_prob="0.755">
            <gDNA_intron_boundary i_start="45331" i_stop="45496" i_length="166"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="45497" e_stop="45600" e_length="104"/>
          </exon>
          <intron i_serial="15" don_prob="0.932" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45601" i_stop="45684" i_length="84"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="45685" e_stop="45777" e_length="93"/>
          </exon>
          <intron i_serial="16" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45778" i_stop="46659" i_length="882"/>
          </intron>
          <exon e_serial="17" e_score="0.986">
            <gDNA_exon_boundary e_start="46660" e_stop="46728" e_length="69"/>
          </exon>
          <intron i_serial="17" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46729" i_stop="47325" i_length="597"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="47326" e_stop="47390" e_length="65"/>
          </exon>
          <intron i_serial="18" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="47391" i_stop="47748" i_length="358"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="47749" e_stop="47810" e_length="62"/>
          </exon>
          <intron i_serial="19" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47811" i_stop="48223" i_length="413"/>
          </intron>
          <exon e_serial="20" e_score="1.000">
            <gDNA_exon_boundary e_start="48224" e_stop="48319" e_length="96"/>
          </exon>
          <intron i_serial="20" don_prob="0.895" acc_prob="0.995">
            <gDNA_intron_boundary i_start="48320" i_stop="48405" i_length="86"/>
          </intron>
          <exon e_serial="21" e_score="0.992">
            <gDNA_exon_boundary e_start="48406" e_stop="48660" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36860" stop="36878"/>
              <exon start="36944" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38200"/>
              <exon start="38438" stop="38515"/>
              <exon start="38596" stop="38616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37144" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38200"/>
              <exon start="38438" stop="38515"/>
              <exon start="38596" stop="38743"/>
              <exon start="42689" stop="42774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38641" stop="38743"/>
              <exon start="42689" stop="42801"/>
              <exon start="42887" stop="42962"/>
              <exon start="43910" stop="43981"/>
              <exon start="44439" stop="44490"/>
              <exon start="45082" stop="45162"/>
              <exon start="45247" stop="45290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42705" stop="42801"/>
              <exon start="42887" stop="42962"/>
              <exon start="43910" stop="43981"/>
              <exon start="44439" stop="44490"/>
              <exon start="45082" stop="45162"/>
              <exon start="45247" stop="45330"/>
              <exon start="45497" stop="45600"/>
              <exon start="45685" stop="45764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42737" stop="42801"/>
              <exon start="42887" stop="42962"/>
              <exon start="43910" stop="43981"/>
              <exon start="44439" stop="44490"/>
              <exon start="45082" stop="45162"/>
              <exon start="45247" stop="45330"/>
              <exon start="45497" stop="45600"/>
              <exon start="45685" stop="45777"/>
              <exon start="46660" stop="46728"/>
              <exon start="47326" stop="47390"/>
              <exon start="47749" stop="47810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43935" stop="43981"/>
              <exon start="44439" stop="44490"/>
              <exon start="45082" stop="45162"/>
              <exon start="45247" stop="45330"/>
              <exon start="45497" stop="45600"/>
              <exon start="45685" stop="45754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43936" stop="43981"/>
              <exon start="44439" stop="44490"/>
              <exon start="45082" stop="45162"/>
              <exon start="45247" stop="45330"/>
              <exon start="45497" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45088" stop="45162"/>
              <exon start="45247" stop="45330"/>
              <exon start="45497" stop="45600"/>
              <exon start="45685" stop="45777"/>
              <exon start="46660" stop="46728"/>
              <exon start="47326" stop="47357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47352" stop="47390"/>
              <exon start="47749" stop="47810"/>
              <exon start="48224" stop="48319"/>
              <exon start="48406" stop="48660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47752" stop="47810"/>
              <exon start="48224" stop="48319"/>
              <exon start="48406" stop="48660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGACTTTCAAGACTCTGT : CAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAG : CTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAG : ATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAG : AGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATG : GTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGACCCCGAGGAAGTGAGAAGGCAAGCGGCAGCTTCCACTCAAAGATTTGAGAAAG : GAAAACAACTGTCAATCTTGGAAGGGATTTTCATTGCAGTCAAGGATGACATTGATTGCTATCCTCATCCTTCAAAAG : GTGGTTCTAAATGGTTTCATGAGGTTCGCCAGGTGAAGGCAGATGGGGTTCCTGTGTCAAGATTACGAAACAATGGTGCAATTTTAGTAGGAAAGACAAATATGCATGAGTTTGGTATGGGCACAACAGGAAATAATCCAAATTATGG : TACACCTAGAAATCCGCATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAG : GTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGG : GTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGT : GTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCT : TCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAG : TGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAA : ACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGG : GAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGACTATATATCTGCCCAGTGTCTTAG : GCGAAGGATAATGTACTACCATATGGAGATTTTCAAGAAAGTAGATGTCATTGTAACACCTACCACTGG : AATGACAGCCCCAGAAATTCCAGAAAGTGCTCTTGCAGTTGGAGAGACAAATTTGCAAGTTGTAG : CAAGACTAATGCAATTTGCTATGACAGCAAATGTTCTTGGACTTCCGGCAATTTCTGTCCCT : ATTGGTCATGATAAGCAAGGACTTCCAATAGGCTTGCAACTTATTGGTCGTCCGTGGTGTGAAGCTTCAATCTTGCGTTTAGCTGTTGCAGTTGAG : GAAATGTCTGCAGAATATAGGAAGAAGCCAGTGGAGTTCTATGACATCTTGAAAGGGAACGGTTTTCACGACTCCACTGAGGAATAAGTTTTAAGCCTAACCTCAAAGAGAAAACAAGATTTTATCACAGTGTGCTTAGCGTTTTTGTGTTTTGTATCTCTTTTAAAATAGCAGTTAAATTTCTTTTTTGGCCATGAAACTCACGCACATCTTGTTTGTATAACTTTGTTCTTAATTATCTCACTCTTACCATAG</gDNA_template>
            <first_frame> S  T  F  K  T  L   : S  V  Q  K  L  *  L  K  N  G  E  K  T  S  N  A  A  G  E  *  S  R  P  Y  C  R  R  I  F  T  R  K  N  *  S :   S  T  F  D  G  V  L  V  Q  V  V  C  *  S  N  R  G  T  C  N  W  F  F  Y  C  *  S  S  E  G  E  E  W  D  Y  *   : D  S  E  E  Y  C  D  T  R  G  S  H  V  H  S  P  V  P  S  S  R :   A  R  A  W  C  C  L  L  R  R  R  W  K  T  *  R  T  G  *  F  S  I  *  V  S  S  T  L  *  S  C  *  *  M  E  F  *  F  R  R  I  I  P  I  P  L  L  E  N  S  *  L  *  I  C  I  Q  K  *  A  Y  D  P  I  H   : G  C  R  A  L  Y  L  S  N  G  G  I  *  *  *  A  A  I  S  T  I  I  D  L  I  *  P  R  G  S  E  K  A  S  G  S  F  H  S  K  I  *  E  R :   K  T  T  V  N  L  G  R  D  F  H  C  S  Q  G  *  H  *  L  L  S  S  S  F  K  R :   W  F  *  M  V  S  *  G  S  P  G  E  G  R  W  G  S  C  V  K  I  T  K  Q  W  C  N  F  S  R  K  D  K  Y  A  *  V  W  Y  G  H  N  R  K  *  S  K  L  W  :  Y  T  *  K  S  A  *  S  K  K  V  H  R  W  F  F  L  R  F  S  C  N  C  R  F  W  I  V  L  S  S  I  G  N  R  C  W  R :   F  S  T  N  S  C  F  S  L  R  G  C  G  L  K  N  N  I  W  T  D  *  P  D  R  :  V  F  V  G  S  R  N  C  H  N  Y  W  T  H  H  S  Y  C  *  G  C  H  T  C  :  V  C  S  N  L  G  I  L  S  N  *  S  N  S  A  E  S   : F  H  P  *  F  S  R  F  I  F  Q  *  E  F  K  Y  L  G  I  T  Y  L  G  K  V  Y  K   : V  V  *  R  C  *  L  D  R  H  I  *  *  V  *  R  C  P  K  P  T  I  S  S  V  W  V  Q   : N  N  R  D  C  H  T  G  A  S  *  A  A  H  S  S  Y  C  Y  F  W  I  *  I  T  V  L  F  E  S  *  L  R  G  W  :  E  R  S  *  I  D  *  *  H  S  H  K  S  G  T  F  Q  I  I  C  S  I  *  L  Y  I  C  P  V  S  *  :  A  K  D  N  V  L  P  Y  G  D  F  Q  E  S  R  C  H  C  N  T  Y  H  W  :  N  D  S  P  R  N  S  R  K  C  S  C  S  W  R  D  K  F  A  S  C  S :   K  T  N  A  I  C  Y  D  S  K  C  S  W  T  S  G  N  F  C  P   : Y  W  S  *  *  A  R  T  S  N  R  L  A  T  Y  W  S  S  V  V  *  S  F  N  L  A  F  S  C  C  S  *   : G  N  V  C  R  I  *  E  E  A  S  G  V  L  *  H  L  E  R  E  R  F  S  R  L  H  *  G  I  S  F  K  P  N  L  K  E  K  T  R  F  Y  H  S  V  L  S  V  F  V  F  C  I  S  F  K  I  A  V  K  F  L  F  W  P  *  N  S  R  T  S  C  L  Y  N  F  V  L  N  Y  L  T  L  T  I  </first_frame>
            <second_frame>  R  L  S  R  L  C  :  Q  Y  K  N  C  D  *  K  M  V  K  K  Q  V  M  L  P  A  N  E  V  D  L  T  A  V  E  Y  L  P  E  K  I  E   : A  P  H  L  T  G  F  W  F  K  L  F  V  K  V  I  E  A  P  V  I  G  S  F  I  A  S  H  L  K  E  K  N  G  I  T  E  :  I  L  K  N  T  V  I  P  E  V  P  M  F  I  P  Q  F  P  L  Q   : E  Q  E  P  G  V  V  C  L  G  E  D  G  K  P  K  E  Q  V  D  L  A  F  K  Y  L  P  H  Y  D  P  A  S  R  W  S  S  D  S  G  E  S  S  Q  F  R  C  W  K  I  R  D  Y  E  Y  A  Y  R  N  K  L  T  T  P  S  M  :  V  A  E  H  F  I  S  A  M  E  V  F  N  S  K  Q  P  S  A  P  L  L  I  S  F  D  P  E  E  V  R  R  Q  A  A  A  S  T  Q  R  F  E  K   : G  K  Q  L  S  I  L  E  G  I  F  I  A  V  K  D  D  I  D  C  Y  P  H  P  S  K   : G  G  S  K  W  F  H  E  V  R  Q  V  K  A  D  G  V  P  V  S  R  L  R  N  N  G  A  I  L  V  G  K  T  N  M  H  E  F  G  M  G  T  T  G  N  N  P  N  Y  G :   T  P  R  N  P  H  N  P  K  R  Y  T  G  G  S  S  S  G  S  A  A  I  V  A  S  G  L  C  S  A  A  L  G  T  D  A  G   : G  S  V  R  I  P  A  S  L  C  G  V  V  G  L  K  T  T  F  G  R  T  D  L  T  G :   S  L  W  E  A  G  T  V  T  I  I  G  P  I  T  A  T  V  E  D  A  I  L  V :   Y  A  A  I  S  G  S  S  P  T  D  R  I  Q  L  N  P  :  S  I  P  N  F  P  D  L  S  S  S  E  S  S  N  I  L  G  S  L  T  L  G  K  Y  T  K  :  W  F  N  D  V  S  S  T  D  I  S  D  K  C  E  D  V  L  N  Q  L  F  R  R  Y  G  C  K  :  T  T  E  I  V  I  P  E  L  R  E  L  R  T  A  H  T  V  T  F  G  S  E  S  L  S  F  L  N  P  D  C  E  A  G :   K  G  V  R  L  T  N  D  T  R  T  N  L  A  L  F  R  S  F  A  A  S  D  Y  I  S  A  Q  C  L  R :   R  R  I  M  Y  Y  H  M  E  I  F  K  K  V  D  V  I  V  T  P  T  T  G :   M  T  A  P  E  I  P  E  S  A  L  A  V  G  E  T  N  L  Q  V  V   : A  R  L  M  Q  F  A  M  T  A  N  V  L  G  L  P  A  I  S  V  P  :  I  G  H  D  K  Q  G  L  P  I  G  L  Q  L  I  G  R  P  W  C  E  A  S  I  L  R  L  A  V  A  V  E  :  E  M  S  A  E  Y  R  K  K  P  V  E  F  Y  D  I  L  K  G  N  G  F  H  D  S  T  E  E  *  V  L  S  L  T  S  K  R  K  Q  D  F  I  T  V  C  L  A  F  L  C  F  V  S  L  L  K  *  Q  L  N  F  F  F  G  H  E  T  H  A  H  L  V  C  I  T  L  F  L  I  I  S  L  L  P  * </second_frame>
            <third_frame>   D  F  Q  D  S  V :   S  T  K  I  V  T  E  K  W  *  K  N  K  *  C  C  R  R  M  K  *  T  L  L  P  S  N  I  Y  P  K  K  L  K  :  L  H  I  *  R  G  F  G  S  S  C  L  L  K  *  S  R  H  L  *  L  V  L  L  L  L  V  I  *  R  R  R  M  G  L  L  R :   F  *  R  I  L  *  Y  Q  R  F  P  C  S  F  P  S  S  L  F  K  :  S  K  S  L  V  L  F  A  *  E  K  M  E  N  L  K  N  R  L  I  *  H  L  S  I  F  H  I  M  I  L  L  V  D  G  V  L  I  Q  E  N  H  P  N  S  A  A  G  K  F  V  I  M  N  M  H  T  E  I  S  L  R  P  H  P  W :   L  Q  S  T  L  S  Q  Q  W  R  Y  L  I  V  S  S  H  Q  H  H  Y  *  S  H  L  T  P  R  K  *  E  G  K  R  Q  L  P  L  K  D  L  R  K  :  E  N  N  C  Q  S  W  K  G  F  S  L  Q  S  R  M  T  L  I  A  I  L  I  L  Q  K  :  V  V  L  N  G  F  M  R  F  A  R  *  R  Q  M  G  F  L  C  Q  D  Y  E  T  M  V  Q  F  *  *  E  R  Q  I  C  M  S  L  V  W  A  Q  Q  E  I  I  Q  I  M   : V  H  L  E  I  R  I  I  Q  K  G  T  Q  V  V  L  P  Q  V  Q  L  Q  L  S  L  L  D  C  A  Q  Q  H  W  E  Q  M  L  E  :  V  Q  Y  E  F  L  L  L  F  A  G  L  W  A  *  K  Q  H  L  D  G  L  T  *  Q   : G  L  C  G  K  Q  E  L  S  Q  L  L  D  P  S  Q  L  L  L  R  M  P  Y  L   : C  M  Q  Q  S  R  D  P  L  Q  L  I  E  F  S  *  I  L :   P  S  L  I  F  P  I  Y  L  P  V  R  V  Q  I  S  W  D  H  L  P  W  E  S  I  Q  S :   G  L  T  M  L  A  R  P  T  Y  L  I  S  V  K  M  S  *  T  N  Y  F  V  G  M  G  A  K :   Q  Q  R  L  S  Y  R  S  F  V  S  C  A  Q  L  I  L  L  L  L  D  L  N  H  C  P  F  *  I  L  I  A  R  L   : G  K  E  L  D  *  L  M  T  L  A  Q  I  W  H  F  S  D  H  L  Q  H  L  T  I  Y  L  P  S  V  L   : G  E  G  *  C  T  T  I  W  R  F  S  R  K  *  M  S  L  *  H  L  P  L   : E  *  Q  P  Q  K  F  Q  K  V  L  L  Q  L  E  R  Q  I  C  K  L  *  :  Q  D  *  C  N  L  L  *  Q  Q  M  F  L  D  F  R  Q  F  L  S  L :   L  V  M  I  S  K  D  F  Q  *  A  C  N  L  L  V  V  R  G  V  K  L  Q  S  C  V  *  L  L  Q  L  R :   K  C  L  Q  N  I  G  R  S  Q  W  S  S  M  T  S  *  K  G  T  V  F  T  T  P  L  R  N  K  F  *  A  *  P  Q  R  E  N  K  I  L  S  Q  C  A  *  R  F  C  V  L  Y  L  F  *  N  S  S  *  I  S  F  L  A  M  K  L  T  H  I  L  F  V  *  L  C  S  *  L  S  H  S  Y  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36965" stop="37046"/>
                    <exon start="37139" stop="37248"/>
                    <exon start="37323" stop="37383"/>
                    <exon start="37804" stop="38000"/>
                    <exon start="38071" stop="38200"/>
                    <exon start="38438" stop="38515"/>
                    <exon start="38596" stop="38743"/>
                    <exon start="42689" stop="42801"/>
                    <exon start="42887" stop="42962"/>
                    <exon start="43910" stop="43981"/>
                    <exon start="44439" stop="44490"/>
                    <exon start="45082" stop="45162"/>
                    <exon start="45247" stop="45330"/>
                    <exon start="45497" stop="45600"/>
                    <exon start="45685" stop="45777"/>
                    <exon start="46660" stop="46728"/>
                    <exon start="47326" stop="47390"/>
                    <exon start="47749" stop="47810"/>
                    <exon start="48224" stop="48319"/>
                    <exon start="48406" stop="48492"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1857</number_coding_nucleotides>
                  <number_encoded_amino_acids>619</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVKKQVMLPANEVDLTAVEYLPEKIEAPHLTGFWFKLFVKVIEAPVIGSFIASHLKEKNGITEILKNTVIPEVPMFIPQFPLQEQEPGVVCLGEDGKPKEQVDLAFKYLPHYDPASRWSSDSGESSQFRCWKIRDYEYAYRNKLTTPSMVAEHFISAMEVFNSKQPSAPLLISFDPEEVRRQAAASTQRFEKGKQLSILEGIFIAVKDDIDCYPHPSKGGSKWFHEVRQVKADGVPVSRLRNNGAILVGKTNMHEFGMGTTGNNPNYGTPRNPHNPKRYTGGSSSGSAAIVASGLCSAALGTDAGGSVRIPASLCGVVGLKTTFGRTDLTGSLWEAGTVTIIGPITATVEDAILVYAAISGSSPTDRIQLNPSIPNFPDLSSSESSNILGSLTLGKYTKWFNDVSSTDISDKCEDVLNQLFRRYGCKTTEIVIPELRELRTAHTVTFGSESLSFLNPDCEAGKGVRLTNDTRTNLALFRSFAASDYISAQCLRRRIMYYHMEIFKKVDVIVTPTTGMTAPEIPESALAVGETNLQVVARLMQFAMTANVLGLPAISVPIGHDKQGLPIGLQLIGRPWCEASILRLAVAVEEMSAEYRKKPVEFYDILKGNGFHDSTEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="36911" e_stop="37046"/>
            <exon e_start="37139" e_stop="37248"/>
            <exon e_start="37323" e_stop="37383"/>
            <exon e_start="37804" e_stop="38000"/>
            <exon e_start="38071" e_stop="38200"/>
            <exon e_start="38438" e_stop="38515"/>
            <exon e_start="38596" e_stop="38743"/>
            <exon e_start="42689" e_stop="42801"/>
            <exon e_start="42887" e_stop="42981"/>
            <exon e_start="43910" e_stop="43981"/>
            <exon e_start="44439" e_stop="44622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.796" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.387" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.271" e_score="1.000"/>
          <exon-intron don_prob="0.647" acc_prob="0.768" e_score="0.988"/>
          <exon-intron don_prob="0.694" acc_prob="0.999" e_score="0.916"/>
          <exon-intron don_prob="0.924" acc_prob="0.999" e_score="0.931"/>
          <exon-only e_score="0.897"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36911" e_stop="37046" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.796" acc_prob="0.978">
            <gDNA_intron_boundary i_start="37047" i_stop="37138" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37139" e_stop="37248" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.910" acc_prob="0.915">
            <gDNA_intron_boundary i_start="37249" i_stop="37322" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37323" e_stop="37383" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="37384" i_stop="37803" i_length="420"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37804" e_stop="38000" e_length="197"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.882">
            <gDNA_intron_boundary i_start="38001" i_stop="38070" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38071" e_stop="38200" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.387">
            <gDNA_intron_boundary i_start="38201" i_stop="38437" i_length="237"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38438" e_stop="38515" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="38516" i_stop="38595" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38596" e_stop="38743" e_length="148"/>
          </exon>
          <intron i_serial="7" don_prob="0.939" acc_prob="0.271">
            <gDNA_intron_boundary i_start="38744" i_stop="42688" i_length="3945"/>
          </intron>
          <exon e_serial="8" e_score="0.988">
            <gDNA_exon_boundary e_start="42689" e_stop="42801" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.647" acc_prob="0.768">
            <gDNA_intron_boundary i_start="42802" i_stop="42886" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="0.916">
            <gDNA_exon_boundary e_start="42887" e_stop="42981" e_length="95"/>
          </exon>
          <intron i_serial="9" don_prob="0.694" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42982" i_stop="43909" i_length="928"/>
          </intron>
          <exon e_serial="10" e_score="0.931">
            <gDNA_exon_boundary e_start="43910" e_stop="43981" e_length="72"/>
          </exon>
          <intron i_serial="10" don_prob="0.924" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43982" i_stop="44438" i_length="457"/>
          </intron>
          <exon e_serial="11" e_score="0.897">
            <gDNA_exon_boundary e_start="44439" e_stop="44622" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36911" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36935" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="37853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36936" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38200"/>
              <exon start="38438" stop="38502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36937" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38200"/>
              <exon start="38438" stop="38515"/>
              <exon start="38596" stop="38654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36937" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36937" stop="37046"/>
              <exon start="37139" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37144" stop="37248"/>
              <exon start="37323" stop="37383"/>
              <exon start="37804" stop="38000"/>
              <exon start="38071" stop="38200"/>
              <exon start="38438" stop="38515"/>
              <exon start="38596" stop="38743"/>
              <exon start="42689" stop="42774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42697" stop="42801"/>
              <exon start="42887" stop="42981"/>
              <exon start="43910" stop="43981"/>
              <exon start="44439" stop="44622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412577" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTCTTTGATTGTATCTGCTGTGTTTTTGTACAGTACAAAAATTGTGACTGAAAAATGGTGAAAAAACAAGTAATGCTGCCGGCGAATGAAGTAGACCTTACTGCCGTCGAATATTTACCCGAAAAAATTGAAG : CTCCACATTTGACGGGGTTTTGGTTCAAGTTGTTTGTTAAAGTAATCGAGGCACCTGTAATTGGTTCTTTTATTGCTAGTCATCTGAAGGAGAAGAATGGGATTACTGAG : ATTCTGAAGAATACTGTGATACCAGAGGTTCCCATGTTCATTCCCCAGTTCCCTCTTCAAG : AGCAAGAGCCTGGTGTTGTTTGCTTAGGAGAAGATGGAAAACCTAAAGAACAGGTTGATTTAGCATTTAAGTATCTTCCACATTATGATCCTGCTAGTAGATGGAGTTCTGATTCAGGAGAATCATCCCAATTCCGCTGCTGGAAAATTCGTGATTATGAATATGCATACAGAAATAAGCTTACGACCCCATCCATG : GTTGCAGAGCACTTTATCTCAGCAATGGAGGTATTTAATAGTAAGCAGCCATCAGCACCATTATTGATCTCATTTGACCCCGAGGAAGTGAGAAGGCAAGCGGCAGCTTCCACTCAAAGATTTGAGAAAG : GAAAACAACTGTCAATCTTGGAAGGGATTTTCATTGCAGTCAAGGATGACATTGATTGCTATCCTCATCCTTCAAAAG : GTGGTTCTAAATGGTTTCATGAGGTTCGCCAGGTGAAGGCAGATGGGGTTCCTGTGTCAAGATTACGAAACAATGGTGCAATTTTAGTAGGAAAGACAAATATGCATGAGTTTGGTATGGGCACAACAGGAAATAATCCAAATTATGG : TACACCTAGAAATCCGCATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAG : GTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGGGTAAGTTCATGAATGGCAG : GTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTGTTGAGGATGCCATACTTGT : GTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCTGTAATCACTCACATAGTGTACTTTTGCTAAATTTCAAGATATTGTTCTGTTTGAGTGTTCAGTTTTAACCTTTTTTTTCCCTTCATTCGTGGAAATACTTAAAGTTAATATTAGTAAATAGAGTATCAGATC</gDNA_template>
            <first_frame> F  F  F  D  C  I  C  C  V  F  V  Q  Y  K  N  C  D  *  K  M  V  K  K  Q  V  M  L  P  A  N  E  V  D  L  T  A  V  E  Y  L  P  E  K  I  E   : A  P  H  L  T  G  F  W  F  K  L  F  V  K  V  I  E  A  P  V  I  G  S  F  I  A  S  H  L  K  E  K  N  G  I  T  E  :  I  L  K  N  T  V  I  P  E  V  P  M  F  I  P  Q  F  P  L  Q   : E  Q  E  P  G  V  V  C  L  G  E  D  G  K  P  K  E  Q  V  D  L  A  F  K  Y  L  P  H  Y  D  P  A  S  R  W  S  S  D  S  G  E  S  S  Q  F  R  C  W  K  I  R  D  Y  E  Y  A  Y  R  N  K  L  T  T  P  S  M  :  V  A  E  H  F  I  S  A  M  E  V  F  N  S  K  Q  P  S  A  P  L  L  I  S  F  D  P  E  E  V  R  R  Q  A  A  A  S  T  Q  R  F  E  K   : G  K  Q  L  S  I  L  E  G  I  F  I  A  V  K  D  D  I  D  C  Y  P  H  P  S  K   : G  G  S  K  W  F  H  E  V  R  Q  V  K  A  D  G  V  P  V  S  R  L  R  N  N  G  A  I  L  V  G  K  T  N  M  H  E  F  G  M  G  T  T  G  N  N  P  N  Y  G :   T  P  R  N  P  H  N  P  K  R  Y  T  G  G  S  S  S  G  S  A  A  I  V  A  S  G  L  C  S  A  A  L  G  T  D  A  G   : G  S  V  R  I  P  A  S  L  C  G  V  V  G  L  K  T  T  F  G  R  T  D  L  T  G  *  V  H  E  W  Q  :  V  F  V  G  S  R  N  C  H  N  Y  W  T  H  H  S  Y  C  *  G  C  H  T  C  :  V  C  S  N  L  G  I  L  S  N  *  S  N  S  A  E  S  C  N  H  S  H  S  V  L  L  L  N  F  K  I  L  F  C  L  S  V  Q  F  *  P  F  F  S  L  H  S  W  K  Y  L  K  L  I  L  V  N  R  V  S  D  </first_frame>
            <second_frame>  F  S  L  I  V  S  A  V  F  L  Y  S  T  K  I  V  T  E  K  W  *  K  N  K  *  C  C  R  R  M  K  *  T  L  L  P  S  N  I  Y  P  K  K  L  K  :  L  H  I  *  R  G  F  G  S  S  C  L  L  K  *  S  R  H  L  *  L  V  L  L  L  L  V  I  *  R  R  R  M  G  L  L  R :   F  *  R  I  L  *  Y  Q  R  F  P  C  S  F  P  S  S  L  F  K  :  S  K  S  L  V  L  F  A  *  E  K  M  E  N  L  K  N  R  L  I  *  H  L  S  I  F  H  I  M  I  L  L  V  D  G  V  L  I  Q  E  N  H  P  N  S  A  A  G  K  F  V  I  M  N  M  H  T  E  I  S  L  R  P  H  P  W :   L  Q  S  T  L  S  Q  Q  W  R  Y  L  I  V  S  S  H  Q  H  H  Y  *  S  H  L  T  P  R  K  *  E  G  K  R  Q  L  P  L  K  D  L  R  K  :  E  N  N  C  Q  S  W  K  G  F  S  L  Q  S  R  M  T  L  I  A  I  L  I  L  Q  K  :  V  V  L  N  G  F  M  R  F  A  R  *  R  Q  M  G  F  L  C  Q  D  Y  E  T  M  V  Q  F  *  *  E  R  Q  I  C  M  S  L  V  W  A  Q  Q  E  I  I  Q  I  M   : V  H  L  E  I  R  I  I  Q  K  G  T  Q  V  V  L  P  Q  V  Q  L  Q  L  S  L  L  D  C  A  Q  Q  H  W  E  Q  M  L  E  :  V  Q  Y  E  F  L  L  L  F  A  G  L  W  A  *  K  Q  H  L  D  G  L  T  *  Q  G  K  F  M  N  G  R :   S  L  W  E  A  G  T  V  T  I  I  G  P  I  T  A  T  V  E  D  A  I  L  V :   Y  A  A  I  S  G  S  S  P  T  D  R  I  Q  L  N  P  V  I  T  H  I  V  Y  F  C  *  I  S  R  Y  C  S  V  *  V  F  S  F  N  L  F  F  P  F  I  R  G  N  T  *  S  *  Y  *  *  I  E  Y  Q  I </second_frame>
            <third_frame>   F  L  *  L  Y  L  L  C  F  C  T  V  Q  K  L  *  L  K  N  G  E  K  T  S  N  A  A  G  E  *  S  R  P  Y  C  R  R  I  F  T  R  K  N  *  S :   S  T  F  D  G  V  L  V  Q  V  V  C  *  S  N  R  G  T  C  N  W  F  F  Y  C  *  S  S  E  G  E  E  W  D  Y  *   : D  S  E  E  Y  C  D  T  R  G  S  H  V  H  S  P  V  P  S  S  R :   A  R  A  W  C  C  L  L  R  R  R  W  K  T  *  R  T  G  *  F  S  I  *  V  S  S  T  L  *  S  C  *  *  M  E  F  *  F  R  R  I  I  P  I  P  L  L  E  N  S  *  L  *  I  C  I  Q  K  *  A  Y  D  P  I  H   : G  C  R  A  L  Y  L  S  N  G  G  I  *  *  *  A  A  I  S  T  I  I  D  L  I  *  P  R  G  S  E  K  A  S  G  S  F  H  S  K  I  *  E  R :   K  T  T  V  N  L  G  R  D  F  H  C  S  Q  G  *  H  *  L  L  S  S  S  F  K  R :   W  F  *  M  V  S  *  G  S  P  G  E  G  R  W  G  S  C  V  K  I  T  K  Q  W  C  N  F  S  R  K  D  K  Y  A  *  V  W  Y  G  H  N  R  K  *  S  K  L  W  :  Y  T  *  K  S  A  *  S  K  K  V  H  R  W  F  F  L  R  F  S  C  N  C  R  F  W  I  V  L  S  S  I  G  N  R  C  W  R :   F  S  T  N  S  C  F  S  L  R  G  C  G  L  K  N  N  I  W  T  D  *  P  D  R  V  S  S  *  M  A   : G  L  C  G  K  Q  E  L  S  Q  L  L  D  P  S  Q  L  L  L  R  M  P  Y  L   : C  M  Q  Q  S  R  D  P  L  Q  L  I  E  F  S  *  I  L  *  S  L  T  *  C  T  F  A  K  F  Q  D  I  V  L  F  E  C  S  V  L  T  F  F  F  P  S  F  V  E  I  L  K  V  N  I  S  K  *  S  I  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36965" stop="37046"/>
                    <exon start="37139" stop="37248"/>
                    <exon start="37323" stop="37383"/>
                    <exon start="37804" stop="38000"/>
                    <exon start="38071" stop="38200"/>
                    <exon start="38438" stop="38515"/>
                    <exon start="38596" stop="38743"/>
                    <exon start="42689" stop="42801"/>
                    <exon start="42887" stop="42966"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVKKQVMLPANEVDLTAVEYLPEKIEAPHLTGFWFKLFVKVIEAPVIGSFIASHLKEKNGITEILKNTVIPEVPMFIPQFPLQEQEPGVVCLGEDGKPKEQVDLAFKYLPHYDPASRWSSDSGESSQFRCWKIRDYEYAYRNKLTTPSMVAEHFISAMEVFNSKQPSAPLLISFDPEEVRRQAAASTQRFEKGKQLSILEGIFIAVKDDIDCYPHPSKGGSKWFHEVRQVKADGVPVSRLRNNGAILVGKTNMHEFGMGTTGNNPNYGTPRNPHNPKRYTGGSSSGSAAIVASGLCSAALGTDAGGSVRIPASLCGVVGLKTTFGRTDLTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="38414" e_stop="38515"/>
            <exon e_start="38596" e_stop="38743"/>
            <exon e_start="42689" e_stop="42801"/>
            <exon e_start="42887" e_stop="42962"/>
            <exon e_start="43910" e_stop="43962"/>
            <exon e_start="44439" e_stop="44490"/>
            <exon e_start="45082" e_stop="45162"/>
            <exon e_start="45247" e_stop="45330"/>
            <exon e_start="45497" e_stop="45600"/>
            <exon e_start="45685" e_stop="45777"/>
            <exon e_start="46660" e_stop="46728"/>
            <exon e_start="47326" e_stop="47390"/>
            <exon e_start="47749" e_stop="47810"/>
            <exon e_start="48224" e_stop="48319"/>
            <exon e_start="48406" e_stop="48660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="0.951"/>
          <exon-intron don_prob="0.939" acc_prob="0.271" e_score="0.973"/>
          <exon-intron don_prob="0.647" acc_prob="0.768" e_score="0.973"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.943"/>
          <exon-intron don_prob="0.997" acc_prob="0.890" e_score="0.942"/>
          <exon-intron don_prob="0.489" acc_prob="0.620" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.755" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.993" e_score="0.962"/>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="0.989"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="38414" e_stop="38515" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="38516" i_stop="38595" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="38596" e_stop="38743" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.271">
            <gDNA_intron_boundary i_start="38744" i_stop="42688" i_length="3945"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="42689" e_stop="42801" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.647" acc_prob="0.768">
            <gDNA_intron_boundary i_start="42802" i_stop="42886" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="42887" e_stop="42962" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42963" i_stop="43909" i_length="947"/>
          </intron>
          <exon e_serial="5" e_score="0.943">
            <gDNA_exon_boundary e_start="43910" e_stop="43962" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43963" i_stop="44438" i_length="476"/>
          </intron>
          <exon e_serial="6" e_score="0.942">
            <gDNA_exon_boundary e_start="44439" e_stop="44490" e_length="52"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.890">
            <gDNA_intron_boundary i_start="44491" i_stop="45081" i_length="591"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45082" e_stop="45162" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.489" acc_prob="0.620">
            <gDNA_intron_boundary i_start="45163" i_stop="45246" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="45247" e_stop="45330" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.974" acc_prob="0.755">
            <gDNA_intron_boundary i_start="45331" i_stop="45496" i_length="166"/>
          </intron>
          <exon e_serial="9" e_score="0.962">
            <gDNA_exon_boundary e_start="45497" e_stop="45600" e_length="104"/>
          </exon>
          <intron i_serial="9" don_prob="0.932" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45601" i_stop="45684" i_length="84"/>
          </intron>
          <exon e_serial="10" e_score="0.989">
            <gDNA_exon_boundary e_start="45685" e_stop="45777" e_length="93"/>
          </exon>
          <intron i_serial="10" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45778" i_stop="46659" i_length="882"/>
          </intron>
          <exon e_serial="11" e_score="0.986">
            <gDNA_exon_boundary e_start="46660" e_stop="46728" e_length="69"/>
          </exon>
          <intron i_serial="11" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46729" i_stop="47325" i_length="597"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="47326" e_stop="47390" e_length="65"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="47391" i_stop="47748" i_length="358"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="47749" e_stop="47810" e_length="62"/>
          </exon>
          <intron i_serial="13" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47811" i_stop="48223" i_length="413"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="48224" e_stop="48319" e_length="96"/>
          </exon>
          <intron i_serial="14" don_prob="0.895" acc_prob="0.995">
            <gDNA_intron_boundary i_start="48320" i_stop="48405" i_length="86"/>
          </intron>
          <exon e_serial="15" e_score="0.992">
            <gDNA_exon_boundary e_start="48406" e_stop="48660" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38414" stop="38515"/>
              <exon start="38596" stop="38743"/>
              <exon start="42689" stop="42801"/>
              <exon start="42887" stop="42962"/>
              <exon start="43910" stop="43962"/>
              <exon start="44439" stop="44490"/>
              <exon start="45082" stop="45162"/>
              <exon start="45247" stop="45330"/>
              <exon start="45497" stop="45591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45088" stop="45162"/>
              <exon start="45247" stop="45330"/>
              <exon start="45497" stop="45600"/>
              <exon start="45685" stop="45777"/>
              <exon start="46660" stop="46728"/>
              <exon start="47326" stop="47357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47352" stop="47390"/>
              <exon start="47749" stop="47810"/>
              <exon start="48224" stop="48319"/>
              <exon start="48406" stop="48660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47752" stop="47810"/>
              <exon start="48224" stop="48319"/>
              <exon start="48406" stop="48660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTTAATGATGTGGTCATGGAGGAAAACAACTGTCAATCTTGGAAGGGATTTTCATTGCAGTCAAGGATGACATTGATTGCTATCCTCATCCTTCAAAAG : GTGGTTCTAAATGGTTTCATGAGGTTCGCCAGGTGAAGGCAGATGGGGTTCCTGTGTCAAGATTACGAAACAATGGTGCAATTTTAGTAGGAAAGACAAATATGCATGAGTTTGGTATGGGCACAACAGGAAATAATCCAAATTATGG : TACACCTAGAAATCCGCATAATCCAAAAAGGTACACAGGTGGTTCTTCCTCAGGTTCAGCTGCAATTGTCGCTTCTGGATTGTGCTCAGCAGCATTGGGAACAGATGCTGGAG : GTTCAGTACGAATTCCTGCTTCTCTTTGCGGGGTTGTGGGCTTAAAAACAACATTTGGACGGACTGACCTGACAGG : GTCTTTGTGGGAAGCAGGAACTGTCACAATTATTGGACCCATCACAGCTACTG : GTATGCAGCAATCTCGGGATCCTCTCCAACTGATCGAATTCAGCTGAATCCT : TCCATCCCTAATTTTCCCGATTTATCTTCCAGTGAGAGTTCAAATATCTTGGGATCACTTACCTTGGGAAAGTATACAAAG : TGGTTTAACGATGTTAGCTCGACCGACATATCTGATAAGTGTGAAGATGTCCTAAACCAACTATTTCGTCGGTATGGGTGCAAA : ACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGG : GAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGACTATATATCTGCCCAGTGTCTTAG : GCGAAGGATAATGTACTACCATATGGAGATTTTCAAGAAAGTAGATGTCATTGTAACACCTACCACTGG : AATGACAGCCCCAGAAATTCCAGAAAGTGCTCTTGCAGTTGGAGAGACAAATTTGCAAGTTGTAG : CAAGACTAATGCAATTTGCTATGACAGCAAATGTTCTTGGACTTCCGGCAATTTCTGTCCCT : ATTGGTCATGATAAGCAAGGACTTCCAATAGGCTTGCAACTTATTGGTCGTCCGTGGTGTGAAGCTTCAATCTTGCGTTTAGCTGTTGCAGTTGAG : GAAATGTCTGCAGAATATAGGAAGAAGCCAGTGGAGTTCTATGACATCTTGAAAGGGAACGGTTTTCACGACTCCACTGAGGAATAAGTTTTAAGCCTAACCTCAAAGAGAAAACAAGATTTTATCACAGTGTGCTTAGCGTTTTTGTGTTTTGTATCTCTTTTAAAATAGCAGTTAAATTTCTTTTTTGGCCATGAAACTCACGCACATCTTGTTTGTATAACTTTGTTCTTAATTATCTCACTCTTACCATAG</gDNA_template>
            <first_frame> F  F  N  D  V  V  M  E  E  N  N  C  Q  S  W  K  G  F  S  L  Q  S  R  M  T  L  I  A  I  L  I  L  Q  K  :  V  V  L  N  G  F  M  R  F  A  R  *  R  Q  M  G  F  L  C  Q  D  Y  E  T  M  V  Q  F  *  *  E  R  Q  I  C  M  S  L  V  W  A  Q  Q  E  I  I  Q  I  M   : V  H  L  E  I  R  I  I  Q  K  G  T  Q  V  V  L  P  Q  V  Q  L  Q  L  S  L  L  D  C  A  Q  Q  H  W  E  Q  M  L  E  :  V  Q  Y  E  F  L  L  L  F  A  G  L  W  A  *  K  Q  H  L  D  G  L  T  *  Q   : G  L  C  G  K  Q  E  L  S  Q  L  L  D  P  S  Q  L  L  :  V  C  S  N  L  G  I  L  S  N  *  S  N  S  A  E  S   : F  H  P  *  F  S  R  F  I  F  Q  *  E  F  K  Y  L  G  I  T  Y  L  G  K  V  Y  K   : V  V  *  R  C  *  L  D  R  H  I  *  *  V  *  R  C  P  K  P  T  I  S  S  V  W  V  Q   : N  N  R  D  C  H  T  G  A  S  *  A  A  H  S  S  Y  C  Y  F  W  I  *  I  T  V  L  F  E  S  *  L  R  G  W  :  E  R  S  *  I  D  *  *  H  S  H  K  S  G  T  F  Q  I  I  C  S  I  *  L  Y  I  C  P  V  S  *  :  A  K  D  N  V  L  P  Y  G  D  F  Q  E  S  R  C  H  C  N  T  Y  H  W  :  N  D  S  P  R  N  S  R  K  C  S  C  S  W  R  D  K  F  A  S  C  S :   K  T  N  A  I  C  Y  D  S  K  C  S  W  T  S  G  N  F  C  P   : Y  W  S  *  *  A  R  T  S  N  R  L  A  T  Y  W  S  S  V  V  *  S  F  N  L  A  F  S  C  C  S  *   : G  N  V  C  R  I  *  E  E  A  S  G  V  L  *  H  L  E  R  E  R  F  S  R  L  H  *  G  I  S  F  K  P  N  L  K  E  K  T  R  F  Y  H  S  V  L  S  V  F  V  F  C  I  S  F  K  I  A  V  K  F  L  F  W  P  *  N  S  R  T  S  C  L  Y  N  F  V  L  N  Y  L  T  L  T  I  </first_frame>
            <second_frame>  S  L  M  M  W  S  W  R  K  T  T  V  N  L  G  R  D  F  H  C  S  Q  G  *  H  *  L  L  S  S  S  F  K  R :   W  F  *  M  V  S  *  G  S  P  G  E  G  R  W  G  S  C  V  K  I  T  K  Q  W  C  N  F  S  R  K  D  K  Y  A  *  V  W  Y  G  H  N  R  K  *  S  K  L  W  :  Y  T  *  K  S  A  *  S  K  K  V  H  R  W  F  F  L  R  F  S  C  N  C  R  F  W  I  V  L  S  S  I  G  N  R  C  W  R :   F  S  T  N  S  C  F  S  L  R  G  C  G  L  K  N  N  I  W  T  D  *  P  D  R  :  V  F  V  G  S  R  N  C  H  N  Y  W  T  H  H  S  Y  W :   Y  A  A  I  S  G  S  S  P  T  D  R  I  Q  L  N  P  :  S  I  P  N  F  P  D  L  S  S  S  E  S  S  N  I  L  G  S  L  T  L  G  K  Y  T  K  :  W  F  N  D  V  S  S  T  D  I  S  D  K  C  E  D  V  L  N  Q  L  F  R  R  Y  G  C  K  :  T  T  E  I  V  I  P  E  L  R  E  L  R  T  A  H  T  V  T  F  G  S  E  S  L  S  F  L  N  P  D  C  E  A  G :   K  G  V  R  L  T  N  D  T  R  T  N  L  A  L  F  R  S  F  A  A  S  D  Y  I  S  A  Q  C  L  R :   R  R  I  M  Y  Y  H  M  E  I  F  K  K  V  D  V  I  V  T  P  T  T  G :   M  T  A  P  E  I  P  E  S  A  L  A  V  G  E  T  N  L  Q  V  V   : A  R  L  M  Q  F  A  M  T  A  N  V  L  G  L  P  A  I  S  V  P  :  I  G  H  D  K  Q  G  L  P  I  G  L  Q  L  I  G  R  P  W  C  E  A  S  I  L  R  L  A  V  A  V  E  :  E  M  S  A  E  Y  R  K  K  P  V  E  F  Y  D  I  L  K  G  N  G  F  H  D  S  T  E  E  *  V  L  S  L  T  S  K  R  K  Q  D  F  I  T  V  C  L  A  F  L  C  F  V  S  L  L  K  *  Q  L  N  F  F  F  G  H  E  T  H  A  H  L  V  C  I  T  L  F  L  I  I  S  L  L  P  * </second_frame>
            <third_frame>   L  *  *  C  G  H  G  G  K  Q  L  S  I  L  E  G  I  F  I  A  V  K  D  D  I  D  C  Y  P  H  P  S  K   : G  G  S  K  W  F  H  E  V  R  Q  V  K  A  D  G  V  P  V  S  R  L  R  N  N  G  A  I  L  V  G  K  T  N  M  H  E  F  G  M  G  T  T  G  N  N  P  N  Y  G :   T  P  R  N  P  H  N  P  K  R  Y  T  G  G  S  S  S  G  S  A  A  I  V  A  S  G  L  C  S  A  A  L  G  T  D  A  G   : G  S  V  R  I  P  A  S  L  C  G  V  V  G  L  K  T  T  F  G  R  T  D  L  T  G :   S  L  W  E  A  G  T  V  T  I  I  G  P  I  T  A  T   : G  M  Q  Q  S  R  D  P  L  Q  L  I  E  F  S  *  I  L :   P  S  L  I  F  P  I  Y  L  P  V  R  V  Q  I  S  W  D  H  L  P  W  E  S  I  Q  S :   G  L  T  M  L  A  R  P  T  Y  L  I  S  V  K  M  S  *  T  N  Y  F  V  G  M  G  A  K :   Q  Q  R  L  S  Y  R  S  F  V  S  C  A  Q  L  I  L  L  L  L  D  L  N  H  C  P  F  *  I  L  I  A  R  L   : G  K  E  L  D  *  L  M  T  L  A  Q  I  W  H  F  S  D  H  L  Q  H  L  T  I  Y  L  P  S  V  L   : G  E  G  *  C  T  T  I  W  R  F  S  R  K  *  M  S  L  *  H  L  P  L   : E  *  Q  P  Q  K  F  Q  K  V  L  L  Q  L  E  R  Q  I  C  K  L  *  :  Q  D  *  C  N  L  L  *  Q  Q  M  F  L  D  F  R  Q  F  L  S  L :   L  V  M  I  S  K  D  F  Q  *  A  C  N  L  L  V  V  R  G  V  K  L  Q  S  C  V  *  L  L  Q  L  R :   K  C  L  Q  N  I  G  R  S  Q  W  S  S  M  T  S  *  K  G  T  V  F  T  T  P  L  R  N  K  F  *  A  *  P  Q  R  E  N  K  I  L  S  Q  C  A  *  R  F  C  V  L  Y  L  F  *  N  S  S  *  I  S  F  L  A  M  K  L  T  H  I  L  F  V  *  L  C  S  *  L  S  H  S  Y  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42954" stop="42962"/>
                    <exon start="43910" stop="43962"/>
                    <exon start="44439" stop="44490"/>
                    <exon start="45082" stop="45162"/>
                    <exon start="45247" stop="45330"/>
                    <exon start="45497" stop="45600"/>
                    <exon start="45685" stop="45777"/>
                    <exon start="46660" stop="46728"/>
                    <exon start="47326" stop="47390"/>
                    <exon start="47749" stop="47810"/>
                    <exon start="48224" stop="48319"/>
                    <exon start="48406" stop="48492"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PDRVFVGSRNCHNYWTHHSYWYAAISGSSPTDRIQLNPSIPNFPDLSSSESSNILGSLTLGKYTKWFNDVSSTDISDKCEDVLNQLFRRYGCKTTEIVIPELRELRTAHTVTFGSESLSFLNPDCEAGKGVRLTNDTRTNLALFRSFAASDYISAQCLRRRIMYYHMEIFKKVDVIVTPTTGMTAPEIPESALAVGETNLQVVARLMQFAMTANVLGLPAISVPIGHDKQGLPIGLQLIGRPWCEASILRLAVAVEEMSAEYRKKPVEFYDILKGNGFHDSTEE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38686" stop="38743"/>
                    <exon start="42689" stop="42801"/>
                    <exon start="42887" stop="42931"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERQICMSLVWAQQEIIQIMVHLEIRIIQKGTQVVLPQVQLQLSLLDCAQQHWEQMLEVQYEFLLLFAGLWA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="45478" e_stop="45600"/>
            <exon e_start="45685" e_stop="45777"/>
            <exon e_start="46660" e_stop="46728"/>
            <exon e_start="47326" e_stop="47390"/>
            <exon e_start="47749" e_stop="47810"/>
            <exon e_start="48224" e_stop="48319"/>
            <exon e_start="48406" e_stop="48660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.932" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45478" e_stop="45600" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.932" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45601" i_stop="45684" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45685" e_stop="45777" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45778" i_stop="46659" i_length="882"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46660" e_stop="46728" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46729" i_stop="47325" i_length="597"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47326" e_stop="47390" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="47391" i_stop="47748" i_length="358"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47749" e_stop="47810" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47811" i_stop="48223" i_length="413"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="48224" e_stop="48319" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.895" acc_prob="0.995">
            <gDNA_intron_boundary i_start="48320" i_stop="48405" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="48406" e_stop="48660" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45478" stop="45600"/>
              <exon start="45685" stop="45777"/>
              <exon start="46660" stop="46728"/>
              <exon start="47326" stop="47390"/>
              <exon start="47749" stop="47810"/>
              <exon start="48224" stop="48245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47352" stop="47390"/>
              <exon start="47749" stop="47810"/>
              <exon start="48224" stop="48319"/>
              <exon start="48406" stop="48660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47752" stop="47810"/>
              <exon start="48224" stop="48319"/>
              <exon start="48406" stop="48660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAACTCTTTGCAATCAAGACAACAGAGATTGTCATACCGGAGCTTCGTGAGCTGCGCACAGCTCATACTGTTACTTTTGGATCTGAATCACTGTCCTTTTTGAATCCTGATTGCGAGGCTGG : GAAAGGAGTTAGATTGACTAATGACACTCGCACAAATCTGGCACTTTTCAGATCATTTGCAGCATCTGACTATATATCTGCCCAGTGTCTTAG : GCGAAGGATAATGTACTACCATATGGAGATTTTCAAGAAAGTAGATGTCATTGTAACACCTACCACTGG : AATGACAGCCCCAGAAATTCCAGAAAGTGCTCTTGCAGTTGGAGAGACAAATTTGCAAGTTGTAG : CAAGACTAATGCAATTTGCTATGACAGCAAATGTTCTTGGACTTCCGGCAATTTCTGTCCCT : ATTGGTCATGATAAGCAAGGACTTCCAATAGGCTTGCAACTTATTGGTCGTCCGTGGTGTGAAGCTTCAATCTTGCGTTTAGCTGTTGCAGTTGAG : GAAATGTCTGCAGAATATAGGAAGAAGCCAGTGGAGTTCTATGACATCTTGAAAGGGAACGGTTTTCACGACTCCACTGAGGAATAAGTTTTAAGCCTAACCTCAAAGAGAAAACAAGATTTTATCACAGTGTGCTTAGCGTTTTTGTGTTTTGTATCTCTTTTAAAATAGCAGTTAAATTTCTTTTTTGGCCATGAAACTCACGCACATCTTGTTTGTATAACTTTGTTCTTAATTATCTCACTCTTACCATAG</gDNA_template>
            <first_frame> L  T  L  C  N  Q  D  N  R  D  C  H  T  G  A  S  *  A  A  H  S  S  Y  C  Y  F  W  I  *  I  T  V  L  F  E  S  *  L  R  G  W  :  E  R  S  *  I  D  *  *  H  S  H  K  S  G  T  F  Q  I  I  C  S  I  *  L  Y  I  C  P  V  S  *  :  A  K  D  N  V  L  P  Y  G  D  F  Q  E  S  R  C  H  C  N  T  Y  H  W  :  N  D  S  P  R  N  S  R  K  C  S  C  S  W  R  D  K  F  A  S  C  S :   K  T  N  A  I  C  Y  D  S  K  C  S  W  T  S  G  N  F  C  P   : Y  W  S  *  *  A  R  T  S  N  R  L  A  T  Y  W  S  S  V  V  *  S  F  N  L  A  F  S  C  C  S  *   : G  N  V  C  R  I  *  E  E  A  S  G  V  L  *  H  L  E  R  E  R  F  S  R  L  H  *  G  I  S  F  K  P  N  L  K  E  K  T  R  F  Y  H  S  V  L  S  V  F  V  F  C  I  S  F  K  I  A  V  K  F  L  F  W  P  *  N  S  R  T  S  C  L  Y  N  F  V  L  N  Y  L  T  L  T  I  </first_frame>
            <second_frame>  *  L  F  A  I  K  T  T  E  I  V  I  P  E  L  R  E  L  R  T  A  H  T  V  T  F  G  S  E  S  L  S  F  L  N  P  D  C  E  A  G :   K  G  V  R  L  T  N  D  T  R  T  N  L  A  L  F  R  S  F  A  A  S  D  Y  I  S  A  Q  C  L  R :   R  R  I  M  Y  Y  H  M  E  I  F  K  K  V  D  V  I  V  T  P  T  T  G :   M  T  A  P  E  I  P  E  S  A  L  A  V  G  E  T  N  L  Q  V  V   : A  R  L  M  Q  F  A  M  T  A  N  V  L  G  L  P  A  I  S  V  P  :  I  G  H  D  K  Q  G  L  P  I  G  L  Q  L  I  G  R  P  W  C  E  A  S  I  L  R  L  A  V  A  V  E  :  E  M  S  A  E  Y  R  K  K  P  V  E  F  Y  D  I  L  K  G  N  G  F  H  D  S  T  E  E  *  V  L  S  L  T  S  K  R  K  Q  D  F  I  T  V  C  L  A  F  L  C  F  V  S  L  L  K  *  Q  L  N  F  F  F  G  H  E  T  H  A  H  L  V  C  I  T  L  F  L  I  I  S  L  L  P  * </second_frame>
            <third_frame>   N  S  L  Q  S  R  Q  Q  R  L  S  Y  R  S  F  V  S  C  A  Q  L  I  L  L  L  L  D  L  N  H  C  P  F  *  I  L  I  A  R  L   : G  K  E  L  D  *  L  M  T  L  A  Q  I  W  H  F  S  D  H  L  Q  H  L  T  I  Y  L  P  S  V  L   : G  E  G  *  C  T  T  I  W  R  F  S  R  K  *  M  S  L  *  H  L  P  L   : E  *  Q  P  Q  K  F  Q  K  V  L  L  Q  L  E  R  Q  I  C  K  L  *  :  Q  D  *  C  N  L  L  *  Q  Q  M  F  L  D  F  R  Q  F  L  S  L :   L  V  M  I  S  K  D  F  Q  *  A  C  N  L  L  V  V  R  G  V  K  L  Q  S  C  V  *  L  L  Q  L  R :   K  C  L  Q  N  I  G  R  S  Q  W  S  S  M  T  S  *  K  G  T  V  F  T  T  P  L  R  N  K  F  *  A  *  P  Q  R  E  N  K  I  L  S  Q  C  A  *  R  F  C  V  L  Y  L  F  *  N  S  S  *  I  S  F  L  A  M  K  L  T  H  I  L  F  V  *  L  C  S  *  L  S  H  S  Y  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45482" stop="45600"/>
                    <exon start="45685" stop="45777"/>
                    <exon start="46660" stop="46728"/>
                    <exon start="47326" stop="47390"/>
                    <exon start="47749" stop="47810"/>
                    <exon start="48224" stop="48319"/>
                    <exon start="48406" stop="48492"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFAIKTTEIVIPELRELRTAHTVTFGSESLSFLNPDCEAGKGVRLTNDTRTNLALFRSFAASDYISAQCLRRRIMYYHMEIFKKVDVIVTPTTGMTAPEIPESALAVGETNLQVVARLMQFAMTANVLGLPAISVPIGHDKQGLPIGLQLIGRPWCEASILRLAVAVEEMSAEYRKKPVEFYDILKGNGFHDSTEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="41998" e_stop="42684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="41998" e_stop="42684" e_length="687"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41998" stop="42684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332471" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGATGGAGAACGTGAGAGAGGGAGTTTAGAAGCGTGAGAGAGAGAGGGCTAATTGGATTAGGAGACTAATTCAAGAATTAGTCAAATAACATTAAAATAAATAAATACAAATCTGTTTTATTTATTTATTTATTTATTCATTTAAAACGTGAAAGGACAATTATGCCCTTAAATACCTATTTATTCTTATTTACATAATTCTCTTTTTTTTTGAATCGTTACATGAGTATTGGATGTTCTGTTGTAGTCATTTAAGGTTCACCAGAGTGGTTTATTCCTAGTTCATTCTTCTTGATCAAGAGAGGTTGTCGGGTGGTGTTCTTTTGGCTGTTATGTGATCATTGCCACATTTTGACTCATTTAACTGCAGAATAGTAATACTTTTGTTTCCCTACATCTCTTTTGAATGATGATTCTTTACTTAAGCTACATATTTCAACATGTCTAATAAAAATGTTGTCCAGTCCAGTTATTATATTTTTGTAGTCTTTTTCCTTTGGTTGAGTGACTGAGAGTCTTGCTTGAGTTAATATTTGACAAGTCACTCATACAGACCGCTTTAGATATCTTTCCTTGTTCTCGGAATATAATTTTTTGAAGTGTATCTGGGAACTATTGTTTCTTGGGTATCTTTAGGTTGAGTGTATATTTTACCTTCCACGGCAGTAATGAGCATTTTTCTATG</gDNA_template>
            <first_frame> E  D  G  E  R  E  R  G  S  L  E  A  *  E  R  E  G  *  L  D  *  E  T  N  S  R  I  S  Q  I  T  L  K  *  I  N  T  N  L  F  Y  L  F  I  Y  L  F  I  *  N  V  K  G  Q  L  C  P  *  I  P  I  Y  S  Y  L  H  N  S  L  F  F  *  I  V  T  *  V  L  D  V  L  L  *  S  F  K  V  H  Q  S  G  L  F  L  V  H  S  S  *  S  R  E  V  V  G  W  C  S  F  G  C  Y  V  I  I  A  T  F  *  L  I  *  L  Q  N  S  N  T  F  V  S  L  H  L  F  *  M  M  I  L  Y  L  S  Y  I  F  Q  H  V  *  *  K  C  C  P  V  Q  L  L  Y  F  C  S  L  F  P  L  V  E  *  L  R  V  L  L  E  L  I  F  D  K  S  L  I  Q  T  A  L  D  I  F  P  C  S  R  N  I  I  F  *  S  V  S  G  N  Y  C  F  L  G  I  F  R  L  S  V  Y  F  T  F  H  G  S  N  E  H  F  S  M </first_frame>
            <second_frame>  K  M  E  N  V  R  E  G  V  *  K  R  E  R  E  R  A  N  W  I  R  R  L  I  Q  E  L  V  K  *  H  *  N  K  *  I  Q  I  C  F  I  Y  L  F  I  Y  S  F  K  T  *  K  D  N  Y  A  L  K  Y  L  F  I  L  I  Y  I  I  L  F  F  F  E  S  L  H  E  Y  W  M  F  C  C  S  H  L  R  F  T  R  V  V  Y  S  *  F  I  L  L  D  Q  E  R  L  S  G  G  V  L  L  A  V  M  *  S  L  P  H  F  D  S  F  N  C  R  I  V  I  L  L  F  P  Y  I  S  F  E  *  *  F  F  T  *  A  T  Y  F  N  M  S  N  K  N  V  V  Q  S  S  Y  Y  I  F  V  V  F  F  L  W  L  S  D  *  E  S  C  L  S  *  Y  L  T  S  H  S  Y  R  P  L  *  I  S  F  L  V  L  G  I  *  F  F  E  V  Y  L  G  T  I  V  S  W  V  S  L  G  *  V  Y  I  L  P  S  T  A  V  M  S  I  F  L   </second_frame>
            <third_frame>   R  W  R  T  *  E  R  E  F  R  S  V  R  E  R  G  L  I  G  L  G  D  *  F  K  N  *  S  N  N  I  K  I  N  K  Y  K  S  V  L  F  I  Y  L  F  I  H  L  K  R  E  R  T  I  M  P  L  N  T  Y  L  F  L  F  T  *  F  S  F  F  L  N  R  Y  M  S  I  G  C  S  V  V  V  I  *  G  S  P  E  W  F  I  P  S  S  F  F  L  I  K  R  G  C  R  V  V  F  F  W  L  L  C  D  H  C  H  I  L  T  H  L  T  A  E  *  *  Y  F  C  F  P  T  S  L  L  N  D  D  S  L  L  K  L  H  I  S  T  C  L  I  K  M  L  S  S  P  V  I  I  F  L  *  S  F  S  F  G  *  V  T  E  S  L  A  *  V  N  I  *  Q  V  T  H  T  D  R  F  R  Y  L  S  L  F  S  E  Y  N  F  L  K  C  I  W  E  L  L  F  L  G  Y  L  *  V  E  C  I  F  Y  L  P  R  Q  *  *  A  F  F  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0071F18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="50752" PGL_stop="54067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50752" e_stop="50865"/>
            <exon e_start="51012" e_stop="51089"/>
            <exon e_start="51162" e_stop="51309"/>
            <exon e_start="51564" e_stop="51676"/>
            <exon e_start="51757" e_stop="51832"/>
            <exon e_start="52203" e_stop="52274"/>
            <exon e_start="52518" e_stop="52523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.428" acc_prob="0.987" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="0.987"/>
          <exon-intron don_prob="0.990" acc_prob="0.584" e_score="0.972"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50752" e_stop="50865" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="50866" i_stop="51011" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51012" e_stop="51089" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.971">
            <gDNA_intron_boundary i_start="51090" i_stop="51161" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51162" e_stop="51309" e_length="148"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.979">
            <gDNA_intron_boundary i_start="51310" i_stop="51563" i_length="254"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="51564" e_stop="51676" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.428" acc_prob="0.987">
            <gDNA_intron_boundary i_start="51677" i_stop="51756" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="51757" e_stop="51832" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="51833" i_stop="52202" i_length="370"/>
          </intron>
          <exon e_serial="6" e_score="0.972">
            <gDNA_exon_boundary e_start="52203" e_stop="52274" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.584">
            <gDNA_intron_boundary i_start="52275" i_stop="52517" i_length="243"/>
          </intron>
          <exon e_serial="7" e_score="0.667">
            <gDNA_exon_boundary e_start="52518" e_stop="52523" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50752" stop="50865"/>
              <exon start="51012" stop="51089"/>
              <exon start="51162" stop="51309"/>
              <exon start="51564" stop="51676"/>
              <exon start="51757" stop="51832"/>
              <exon start="52203" stop="52274"/>
              <exon start="52518" stop="52523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698408" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTAGCTATAGAAGAGTCTAACAACAAGAATCCACTGGCACCACTACTAATTTCTTATGATCCTGATGAAGTCAGAAGGCAAGCTGCTGCTTCCACACAGAGATTTAAAGAAG : GAAGTGAATTATCAATCCTGGATGGTATCTTCATAGCAGTTAAGGATGACATTGATTGCTATCCATATCCATCAAAGG : GTGGCGCAACTTGGTTTCACGAGCTTCGTCAAGTTAAGAAAGATGCTGTCTGTGTCTCAAGATTACGAAACTGCGGTGCAGTTATGGTTGGAAAGACAAATATGCATGAATTGGCCCTGGGAACAACTGGAAATAATGCAAATTTTGG : GACAACCAGGAATCCACATGCTCCAGATAGGTACACAGGCGGGTCTTCCTCAGGCTCTGCAGCTATTGTAGCTTGTGGATTGTGTTCTGCTGCATTAGGAACAGATGGAGGAG : GTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTGGTGGGCTTGAAGACAACATATGGAAGGACTGACATGAAAGG : GTTGCTCTATCATAGTGGAACAGTGGCAATTGTTGGACCTATCACAGCAACTGTTGAGGATGCCATACTGGT : CTCTGC</gDNA_template>
            <first_frame> S  *  L  *  K  S  L  T  T  R  I  H  W  H  H  Y  *  F  L  M  I  L  M  K  S  E  G  K  L  L  L  P  H  R  D  L  K  K  :  E  V  N  Y  Q  S  W  M  V  S  S  *  Q  L  R  M  T  L  I  A  I  H  I  H  Q  R  :  V  A  Q  L  G  F  T  S  F  V  K  L  R  K  M  L  S  V  S  Q  D  Y  E  T  A  V  Q  L  W  L  E  R  Q  I  C  M  N  W  P  W  E  Q  L  E  I  M  Q  I  L   : G  Q  P  G  I  H  M  L  Q  I  G  T  Q  A  G  L  P  Q  A  L  Q  L  L  *  L  V  D  C  V  L  L  H  *  E  Q  M  E  E  :  V  Q  F  G  F  L  L  P  F  V  V  W  W  A  *  R  Q  H  M  E  G  L  T  *  K   : G  C  S  I  I  V  E  Q  W  Q  L  L  D  L  S  Q  Q  L  L  R  M  P  Y  W   : S  L  </first_frame>
            <second_frame>  L  S  Y  R  R  V  *  Q  Q  E  S  T  G  T  T  T  N  F  L  *  S  *  *  S  Q  K  A  S  C  C  F  H  T  E  I  *  R  R :   K  *  I  I  N  P  G  W  Y  L  H  S  S  *  G  *  H  *  L  L  S  I  S  I  K  G :   W  R  N  L  V  S  R  A  S  S  S  *  E  R  C  C  L  C  L  K  I  T  K  L  R  C  S  Y  G  W  K  D  K  Y  A  *  I  G  P  G  N  N  W  K  *  C  K  F  W  :  D  N  Q  E  S  T  C  S  R  *  V  H  R  R  V  F  L  R  L  C  S  Y  C  S  L  W  I  V  F  C  C  I  R  N  R  W  R  R :   F  S  S  D  S  F  F  P  L  W  C  G  G  L  E  D  N  I  W  K  D  *  H  E  R  :  V  A  L  S  *  W  N  S  G  N  C  W  T  Y  H  S  N  C  *  G  C  H  T  G  :  L  C </second_frame>
            <third_frame>   L  A  I  E  E  S  N  N  K  N  P  L  A  P  L  L  I  S  Y  D  P  D  E  V  R  R  Q  A  A  A  S  T  Q  R  F  K  E   : G  S  E  L  S  I  L  D  G  I  F  I  A  V  K  D  D  I  D  C  Y  P  Y  P  S  K   : G  G  A  T  W  F  H  E  L  R  Q  V  K  K  D  A  V  C  V  S  R  L  R  N  C  G  A  V  M  V  G  K  T  N  M  H  E  L  A  L  G  T  T  G  N  N  A  N  F  G :   T  T  R  N  P  H  A  P  D  R  Y  T  G  G  S  S  S  G  S  A  A  I  V  A  C  G  L  C  S  A  A  L  G  T  D  G  G   : G  S  V  R  I  P  S  S  L  C  G  V  V  G  L  K  T  T  Y  G  R  T  D  M  K  G :   L  L  Y  H  S  G  T  V  A  I  V  G  P  I  T  A  T  V  E  D  A  I  L  V :   S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50754" stop="50865"/>
                    <exon start="51012" stop="51089"/>
                    <exon start="51162" stop="51309"/>
                    <exon start="51564" stop="51676"/>
                    <exon start="51757" stop="51832"/>
                    <exon start="52203" stop="52274"/>
                    <exon start="52518" stop="52521"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAIEESNNKNPLAPLLISYDPDEVRRQAAASTQRFKEGSELSILDGIFIAVKDDIDCYPYPSKGGATWFHELRQVKKDAVCVSRLRNCGAVMVGKTNMHELALGTTGNNANFGTTRNPHAPDRYTGGSSSGSAAIVACGLCSAALGTDGGGSVRIPSSLCGVVGLKTTYGRTDMKGLLYHSGTVAIVGPITATVEDAILVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51227" e_stop="51309"/>
            <exon e_start="51564" e_stop="51676"/>
            <exon e_start="51757" e_stop="51832"/>
            <exon e_start="52203" e_stop="52274"/>
            <exon e_start="52947" e_stop="52998"/>
            <exon e_start="53569" e_stop="53649"/>
            <exon e_start="53732" e_stop="53815"/>
            <exon e_start="54025" e_stop="54067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.428" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.373" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.968" e_score="0.976"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51227" e_stop="51309" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.979">
            <gDNA_intron_boundary i_start="51310" i_stop="51563" i_length="254"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51564" e_stop="51676" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.428" acc_prob="0.987">
            <gDNA_intron_boundary i_start="51677" i_stop="51756" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51757" e_stop="51832" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="51833" i_stop="52202" i_length="370"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52203" e_stop="52274" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52275" i_stop="52946" i_length="672"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52947" e_stop="52998" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.932" acc_prob="0.373">
            <gDNA_intron_boundary i_start="52999" i_stop="53568" i_length="570"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53569" e_stop="53649" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.955">
            <gDNA_intron_boundary i_start="53650" i_stop="53731" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="0.976">
            <gDNA_exon_boundary e_start="53732" e_stop="53815" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.968">
            <gDNA_intron_boundary i_start="53816" i_stop="54024" i_length="209"/>
          </intron>
          <exon e_serial="8" e_score="0.977">
            <gDNA_exon_boundary e_start="54025" e_stop="54067" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51227" stop="51309"/>
              <exon start="51564" stop="51676"/>
              <exon start="51757" stop="51832"/>
              <exon start="52203" stop="52274"/>
              <exon start="52947" stop="52998"/>
              <exon start="53569" stop="53649"/>
              <exon start="53732" stop="53815"/>
              <exon start="54025" stop="54067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709419" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAAACTGCGGTGCAGTTATGGTTGGAAAGACAAATATGCATGAATTGGCCCTGGGAACAACTGGAAATAATGCAAATTTTGG : GACAACCAGGAATCCACATGCTCCAGATAGGTACACAGGCGGGTCTTCCTCAGGCTCTGCAGCTATTGTAGCTTGTGGATTGTGTTCTGCTGCATTAGGAACAGATGGAGGAG : GTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTGGTGGGCTTGAAGACAACATATGGAAGGACTGACATGAAAGG : GTTGCTCTATCATAGTGGAACAGTGGCAATTGTTGGACCTATCACAGCAACTGTTGAGGATGCCATACTGGT : GTATGCTGCAATTTTAGGATCTTCGCCTGCTGAGAGAGTTTCTTTGAAACCG : GCCCTCCCTTGTTTACCAAATTTAAGTTCATGTGAGAACTGGTGCTCTATGGGATCACTGCGCTTGGGGAAGTACACTGAG : TGGTTCAATGATGTTTTCTCAACTGAAATATCTGATAAGTGTGAGGATATTCTAAACCAGCTATCAGAAAAACATGAGTGCAAA : ACGATAGAGATTGTAATACCAGAGTTGCATGAGATGTTCATTG</gDNA_template>
            <first_frame> R  N  C  G  A  V  M  V  G  K  T  N  M  H  E  L  A  L  G  T  T  G  N  N  A  N  F  G :   T  T  R  N  P  H  A  P  D  R  Y  T  G  G  S  S  S  G  S  A  A  I  V  A  C  G  L  C  S  A  A  L  G  T  D  G  G   : G  S  V  R  I  P  S  S  L  C  G  V  V  G  L  K  T  T  Y  G  R  T  D  M  K  G :   L  L  Y  H  S  G  T  V  A  I  V  G  P  I  T  A  T  V  E  D  A  I  L  V :   Y  A  A  I  L  G  S  S  P  A  E  R  V  S  L  K  P  :  A  L  P  C  L  P  N  L  S  S  C  E  N  W  C  S  M  G  S  L  R  L  G  K  Y  T  E  :  W  F  N  D  V  F  S  T  E  I  S  D  K  C  E  D  I  L  N  Q  L  S  E  K  H  E  C  K  :  T  I  E  I  V  I  P  E  L  H  E  M  F  I  </first_frame>
            <second_frame>  E  T  A  V  Q  L  W  L  E  R  Q  I  C  M  N  W  P  W  E  Q  L  E  I  M  Q  I  L   : G  Q  P  G  I  H  M  L  Q  I  G  T  Q  A  G  L  P  Q  A  L  Q  L  L  *  L  V  D  C  V  L  L  H  *  E  Q  M  E  E  :  V  Q  F  G  F  L  L  P  F  V  V  W  W  A  *  R  Q  H  M  E  G  L  T  *  K   : G  C  S  I  I  V  E  Q  W  Q  L  L  D  L  S  Q  Q  L  L  R  M  P  Y  W   : C  M  L  Q  F  *  D  L  R  L  L  R  E  F  L  *  N  R :   P  S  L  V  Y  Q  I  *  V  H  V  R  T  G  A  L  W  D  H  C  A  W  G  S  T  L  S :   G  S  M  M  F  S  Q  L  K  Y  L  I  S  V  R  I  F  *  T  S  Y  Q  K  N  M  S  A  K :   R  *  R  L  *  Y  Q  S  C  M  R  C  S  L </second_frame>
            <third_frame>   K  L  R  C  S  Y  G  W  K  D  K  Y  A  *  I  G  P  G  N  N  W  K  *  C  K  F  W  :  D  N  Q  E  S  T  C  S  R  *  V  H  R  R  V  F  L  R  L  C  S  Y  C  S  L  W  I  V  F  C  C  I  R  N  R  W  R  R :   F  S  S  D  S  F  F  P  L  W  C  G  G  L  E  D  N  I  W  K  D  *  H  E  R  :  V  A  L  S  *  W  N  S  G  N  C  W  T  Y  H  S  N  C  *  G  C  H  T  G  :  V  C  C  N  F  R  I  F  A  C  *  E  S  F  F  E  T   : G  P  P  L  F  T  K  F  K  F  M  *  E  L  V  L  Y  G  I  T  A  L  G  E  V  H  *   : V  V  Q  *  C  F  L  N  *  N  I  *  *  V  *  G  Y  S  K  P  A  I  R  K  T  *  V  Q   : N  D  R  D  C  N  T  R  V  A  *  D  V  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51227" stop="51309"/>
                    <exon start="51564" stop="51676"/>
                    <exon start="51757" stop="51832"/>
                    <exon start="52203" stop="52274"/>
                    <exon start="52947" stop="52998"/>
                    <exon start="53569" stop="53649"/>
                    <exon start="53732" stop="53815"/>
                    <exon start="54025" stop="54066"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNCGAVMVGKTNMHELALGTTGNNANFGTTRNPHAPDRYTGGSSSGSAAIVACGLCSAALGTDGGGSVRIPSSLCGVVGLKTTYGRTDMKGLLYHSGTVAIVGPITATVEDAILVYAAILGSSPAERVSLKPALPCLPNLSSCENWCSMGSLRLGKYTEWFNDVFSTEISDKCEDILNQLSEKHECKTIEIVIPELHEMFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="57847" PGL_stop="65820"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60191" e_stop="60269"/>
            <exon e_start="60364" e_stop="60439"/>
            <exon e_start="61510" e_stop="61581"/>
            <exon e_start="62374" e_stop="62425"/>
            <exon e_start="62691" e_stop="62771"/>
            <exon e_start="62853" e_stop="62936"/>
            <exon e_start="63109" e_stop="63212"/>
            <exon e_start="63350" e_stop="63442"/>
            <exon e_start="64019" e_stop="64087"/>
            <exon e_start="64678" e_stop="64742"/>
            <exon e_start="64850" e_stop="64911"/>
            <exon e_start="65187" e_stop="65282"/>
            <exon e_start="65405" e_stop="65508"/>
            <exon e_start="65593" e_stop="65820"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.731" e_score="0.937"/>
          <exon-intron don_prob="0.989" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.559" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.498" e_score="0.988"/>
          <exon-intron don_prob="0.979" acc_prob="0.991" e_score="0.988"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="0.981"/>
          <exon-intron don_prob="0.889" acc_prob="0.994" e_score="0.978"/>
          <exon-intron don_prob="0.471" acc_prob="0.807" e_score="0.986"/>
          <exon-intron don_prob="0.824" acc_prob="0.990" e_score="0.985"/>
          <exon-intron don_prob="0.981" acc_prob="0.539" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.836" e_score="0.952"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="60191" e_stop="60269" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.731">
            <gDNA_intron_boundary i_start="60270" i_stop="60363" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60364" e_stop="60439" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.956">
            <gDNA_intron_boundary i_start="60440" i_stop="61509" i_length="1070"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61510" e_stop="61581" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.972">
            <gDNA_intron_boundary i_start="61582" i_stop="62373" i_length="792"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62374" e_stop="62425" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.559">
            <gDNA_intron_boundary i_start="62426" i_stop="62690" i_length="265"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="62691" e_stop="62771" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.498">
            <gDNA_intron_boundary i_start="62772" i_stop="62852" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="62853" e_stop="62936" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="0.991">
            <gDNA_intron_boundary i_start="62937" i_stop="63108" i_length="172"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="63109" e_stop="63212" e_length="104"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="63213" i_stop="63349" i_length="137"/>
          </intron>
          <exon e_serial="8" e_score="0.978">
            <gDNA_exon_boundary e_start="63350" e_stop="63442" e_length="93"/>
          </exon>
          <intron i_serial="8" don_prob="0.889" acc_prob="0.994">
            <gDNA_intron_boundary i_start="63443" i_stop="64018" i_length="576"/>
          </intron>
          <exon e_serial="9" e_score="0.986">
            <gDNA_exon_boundary e_start="64019" e_stop="64087" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.471" acc_prob="0.807">
            <gDNA_intron_boundary i_start="64088" i_stop="64677" i_length="590"/>
          </intron>
          <exon e_serial="10" e_score="0.985">
            <gDNA_exon_boundary e_start="64678" e_stop="64742" e_length="65"/>
          </exon>
          <intron i_serial="10" don_prob="0.824" acc_prob="0.990">
            <gDNA_intron_boundary i_start="64743" i_stop="64849" i_length="107"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="64850" e_stop="64911" e_length="62"/>
          </exon>
          <intron i_serial="11" don_prob="0.981" acc_prob="0.539">
            <gDNA_intron_boundary i_start="64912" i_stop="65186" i_length="275"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="65187" e_stop="65282" e_length="96"/>
          </exon>
          <intron i_serial="12" don_prob="0.925" acc_prob="0.829">
            <gDNA_intron_boundary i_start="65283" i_stop="65404" i_length="122"/>
          </intron>
          <exon e_serial="13" e_score="0.952">
            <gDNA_exon_boundary e_start="65405" e_stop="65508" e_length="104"/>
          </exon>
          <intron i_serial="13" don_prob="0.790" acc_prob="0.836">
            <gDNA_intron_boundary i_start="65509" i_stop="65592" i_length="84"/>
          </intron>
          <exon e_serial="14" e_score="0.912">
            <gDNA_exon_boundary e_start="65593" e_stop="65820" e_length="228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60191" stop="60269"/>
              <exon start="60364" stop="60439"/>
              <exon start="61510" stop="61581"/>
              <exon start="62374" stop="62425"/>
              <exon start="62691" stop="62771"/>
              <exon start="62853" stop="62936"/>
              <exon start="63109" stop="63212"/>
              <exon start="63350" stop="63442"/>
              <exon start="64019" stop="64087"/>
              <exon start="64678" stop="64742"/>
              <exon start="64850" stop="64905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63195" stop="63212"/>
              <exon start="63350" stop="63442"/>
              <exon start="64019" stop="64087"/>
              <exon start="64678" stop="64742"/>
              <exon start="64850" stop="64911"/>
              <exon start="65187" stop="65282"/>
              <exon start="65405" stop="65508"/>
              <exon start="65593" stop="65820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGGAGGGTCTTCCTCAGGCCCTGCAGCTATTGTGGCTTCGGGACTGTGTTCTGCAGCTTTAGGGACAGATGGAGGAG : GTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTAGGTTTGAAGTCAACATATGGTCGAACTGACATGACAGG : GTCATTATGTGATGATGGAACGGTAGAAATAATTGGACCAATAGCCACAACAGTTGAGGACACCATACTTGT : GTATGCAGCAATTTTGGGGCCCTCTCCTGCTGATAGAATCTCTTTGAGACCG : TCCCTCCCTTGTGTACCTAATTTCCCCTCACGAGAGAGCTCGCGATCTCTGGAATCACTGCGCCTTGGAAAATATACAGAG : TGGTTTAATGATGTCTTCTCAACTGATATATCTGACAAGTGTGAGAATGTTCTCAGTCAACTATCAGAAAAGCATGGATGCAAA : ACTGTAGAGATTGTAATACCAGAGTTGCATGAGATGCGCATTGCTCATATTGTTTCTATTGGGTCTGAATCATTGTGCTCACTGAATCCAGACTGTGGTGACGG : GAGAGGAGCAAGATTGACATATGATACTCGTACAAATCTGGCATTTTTTCGTTCATTTACTGCAGCAGATTATGTTGCTGCTCAGCGGCTTAG : GCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAAGGTGGATATCATTGTGACACCTACAACTGG : CATGACAGCACCCAGAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTGATTTGCAAGTTTCAG : GAAATCTTATGCGGTTTATTATAACCGCAAATCTTCTGGGACTTCCTGCTGTTACTGTTCCT : GTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATGCAACTCATTGGCCGACCCTGGTGTGAAGCTTCCATTTTGCGCTTAGCTGCTGCAATTGAG : GAAACTTGTGCTGAGCCCAAGAAGAAGCCACTGCAATATTATGACATTTTGAAAGGGAACTAGAAATCAAGCTTGCTTACGTCAATGGGAGCCCTGGGTAAACG : GTTGGTTATTGGGCATCGATGGTGTCAAAACCATTCATTTTGAATCTTTAAACAGGTCTTTTAATGAAAACTTTACATGGTATAGCAGAGATGTTCTATGTATTTAATTTTCATAGCTTTACTTTAAAAGAATGACGTTTTACAACTACAGTTTACTCTTTCAATCATCTCTCCTCTTTCGCTCTCCTTTCAGAAATTAGATACTCACTCTATCCAAGAAGGGAAATG</gDNA_template>
            <first_frame> T  G  G  S  S  S  G  P  A  A  I  V  A  S  G  L  C  S  A  A  L  G  T  D  G  G   : G  S  V  R  I  P  S  S  L  C  G  V  V  G  L  K  S  T  Y  G  R  T  D  M  T  G :   S  L  C  D  D  G  T  V  E  I  I  G  P  I  A  T  T  V  E  D  T  I  L  V :   Y  A  A  I  L  G  P  S  P  A  D  R  I  S  L  R  P  :  S  L  P  C  V  P  N  F  P  S  R  E  S  S  R  S  L  E  S  L  R  L  G  K  Y  T  E  :  W  F  N  D  V  F  S  T  D  I  S  D  K  C  E  N  V  L  S  Q  L  S  E  K  H  G  C  K  :  T  V  E  I  V  I  P  E  L  H  E  M  R  I  A  H  I  V  S  I  G  S  E  S  L  C  S  L  N  P  D  C  G  D  G :   R  G  A  R  L  T  Y  D  T  R  T  N  L  A  F  F  R  S  F  T  A  A  D  Y  V  A  A  Q  R  L  R :   R  R  L  M  Y  F  H  M  E  I  F  K  K  V  D  I  I  V  T  P  T  T  G :   M  T  A  P  R  I  P  P  S  A  L  K  V  G  E  T  D  L  Q  V  S   : G  N  L  M  R  F  I  I  T  A  N  L  L  G  L  P  A  V  T  V  P  :  V  G  Y  D  K  Q  G  L  P  I  G  M  Q  L  I  G  R  P  W  C  E  A  S  I  L  R  L  A  A  A  I  E  :  E  T  C  A  E  P  K  K  K  P  L  Q  Y  Y  D  I  L  K  G  N  *  K  S  S  L  L  T  S  M  G  A  L  G  K  R :   L  V  I  G  H  R  W  C  Q  N  H  S  F  *  I  F  K  Q  V  F  *  *  K  L  Y  M  V  *  Q  R  C  S  M  Y  L  I  F  I  A  L  L  *  K  N  D  V  L  Q  L  Q  F  T  L  S  I  I  S  P  L  S  L  S  F  Q  K  L  D  T  H  S  I  Q  E  G  K   </first_frame>
            <second_frame>  Q  E  G  L  P  Q  A  L  Q  L  L  W  L  R  D  C  V  L  Q  L  *  G  Q  M  E  E  :  V  Q  F  G  F  L  L  P  F  V  V  L  *  V  *  S  Q  H  M  V  E  L  T  *  Q   : G  H  Y  V  M  M  E  R  *  K  *  L  D  Q  *  P  Q  Q  L  R  T  P  Y  L   : C  M  Q  Q  F  W  G  P  L  L  L  I  E  S  L  *  D  R :   P  S  L  V  Y  L  I  S  P  H  E  R  A  R  D  L  W  N  H  C  A  L  E  N  I  Q  S :   G  L  M  M  S  S  Q  L  I  Y  L  T  S  V  R  M  F  S  V  N  Y  Q  K  S  M  D  A  K :   L  *  R  L  *  Y  Q  S  C  M  R  C  A  L  L  I  L  F  L  L  G  L  N  H  C  A  H  *  I  Q  T  V  V  T   : G  E  E  Q  D  *  H  M  I  L  V  Q  I  W  H  F  F  V  H  L  L  Q  Q  I  M  L  L  L  S  G  L   : G  G  G  *  C  I  S  I  W  R  F  S  R  R  W  I  S  L  *  H  L  Q  L   : A  *  Q  H  P  E  F  H  Q  V  L  L  K  L  G  R  L  I  C  K  F  Q  :  E  I  L  C  G  L  L  *  P  Q  I  F  W  D  F  L  L  L  L  F  L :   L  V  M  T  S  K  G  F  P  *  V  C  N  S  L  A  D  P  G  V  K  L  P  F  C  A  *  L  L  Q  L  R :   K  L  V  L  S  P  R  R  S  H  C  N  I  M  T  F  *  K  G  T  R  N  Q  A  C  L  R  Q  W  E  P  W  V  N   : G  W  L  L  G  I  D  G  V  K  T  I  H  F  E  S  L  N  R  S  F  N  E  N  F  T  W  Y  S  R  D  V  L  C  I  *  F  S  *  L  Y  F  K  R  M  T  F  Y  N  Y  S  L  L  F  Q  S  S  L  L  F  R  S  P  F  R  N  *  I  L  T  L  S  K  K  G  N  </second_frame>
            <third_frame>   R  R  V  F  L  R  P  C  S  Y  C  G  F  G  T  V  F  C  S  F  R  D  R  W  R  R :   F  S  S  D  S  F  F  P  L  W  C  C  R  F  E  V  N  I  W  S  N  *  H  D  R  :  V  I  M  *  *  W  N  G  R  N  N  W  T  N  S  H  N  S  *  G  H  H  T  C  :  V  C  S  N  F  G  A  L  S  C  *  *  N  L  F  E  T   : V  P  P  L  C  T  *  F  P  L  T  R  E  L  A  I  S  G  I  T  A  P  W  K  I  Y  R   : V  V  *  *  C  L  L  N  *  Y  I  *  Q  V  *  E  C  S  Q  S  T  I  R  K  A  W  M  Q   : N  C  R  D  C  N  T  R  V  A  *  D  A  H  C  S  Y  C  F  Y  W  V  *  I  I  V  L  T  E  S  R  L  W  *  R  :  E  R  S  K  I  D  I  *  Y  S  Y  K  S  G  I  F  S  F  I  Y  C  S  R  L  C  C  C  S  A  A  *  :  A  E  V  N  V  F  P  Y  G  D  F  Q  E  G  G  Y  H  C  D  T  Y  N  W  :  H  D  S  T  Q  N  S  T  K  C  S  *  S  W  G  D  *  F  A  S  F  R :   K  S  Y  A  V  Y  Y  N  R  K  S  S  G  T  S  C  C  Y  C  S   : C  W  L  *  Q  A  R  A  S  H  R  Y  A  T  H  W  P  T  L  V  *  S  F  H  F  A  L  S  C  C  N  *   : G  N  L  C  *  A  Q  E  E  A  T  A  I  L  *  H  F  E  R  E  L  E  I  K  L  A  Y  V  N  G  S  P  G  *  T  :  V  G  Y  W  A  S  M  V  S  K  P  F  I  L  N  L  *  T  G  L  L  M  K  T  L  H  G  I  A  E  M  F  Y  V  F  N  F  H  S  F  T  L  K  E  *  R  F  T  T  T  V  Y  S  F  N  H  L  S  S  F  A  L  L  S  E  I  R  Y  S  L  Y  P  R  R  E  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60191" stop="60269"/>
                    <exon start="60364" stop="60439"/>
                    <exon start="61510" stop="61581"/>
                    <exon start="62374" stop="62425"/>
                    <exon start="62691" stop="62771"/>
                    <exon start="62853" stop="62936"/>
                    <exon start="63109" stop="63212"/>
                    <exon start="63350" stop="63442"/>
                    <exon start="64019" stop="64087"/>
                    <exon start="64678" stop="64742"/>
                    <exon start="64850" stop="64911"/>
                    <exon start="65187" stop="65282"/>
                    <exon start="65405" stop="65467"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGGSSSGPAAIVASGLCSAALGTDGGGSVRIPSSLCGVVGLKSTYGRTDMTGSLCDDGTVEIIGPIATTVEDTILVYAAILGPSPADRISLRPSLPCVPNFPSRESSRSLESLRLGKYTEWFNDVFSTDISDKCENVLSQLSEKHGCKTVEIVIPELHEMRIAHIVSIGSESLCSLNPDCGDGRGARLTYDTRTNLAFFRSFTAADYVAAQRLRRRLMYFHMEIFKKVDIIVTPTTGMTAPRIPPSALKVGETDLQVSGNLMRFIITANLLGLPAVTVPVGYDKQGLPIGMQLIGRPWCEASILRLAAAIEETCAEPKKKPLQYYDILKGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="57847" e_stop="58354"/>
            <exon e_start="58458" e_stop="58518"/>
            <exon e_start="59086" e_stop="59485"/>
            <exon e_start="59616" e_stop="59693"/>
            <exon e_start="59763" e_stop="59910"/>
            <exon e_start="60157" e_stop="60269"/>
            <exon e_start="60364" e_stop="60439"/>
            <exon e_start="61510" e_stop="61581"/>
            <exon e_start="62691" e_stop="62771"/>
            <exon e_start="63109" e_stop="63212"/>
            <exon e_start="63350" e_stop="63442"/>
            <exon e_start="64019" e_stop="64087"/>
            <exon e_start="64678" e_stop="64886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.780" e_score="0.998"/>
          <exon-intron don_prob="0.960" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.951" e_score="0.998"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.731" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.559" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.471" acc_prob="0.807" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="57847" e_stop="58354" e_length="508"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.780">
            <gDNA_intron_boundary i_start="58355" i_stop="58457" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58458" e_stop="58518" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58519" i_stop="59085" i_length="567"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="59086" e_stop="59485" e_length="400"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.951">
            <gDNA_intron_boundary i_start="59486" i_stop="59615" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59616" e_stop="59693" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="59694" i_stop="59762" i_length="69"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59763" e_stop="59910" e_length="148"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.893">
            <gDNA_intron_boundary i_start="59911" i_stop="60156" i_length="246"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="60157" e_stop="60269" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.731">
            <gDNA_intron_boundary i_start="60270" i_stop="60363" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="60364" e_stop="60439" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.956">
            <gDNA_intron_boundary i_start="60440" i_stop="61509" i_length="1070"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="61510" e_stop="61581" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.940" acc_prob="0.559">
            <gDNA_intron_boundary i_start="61582" i_stop="62690" i_length="1109"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="62691" e_stop="62771" e_length="81"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="62772" i_stop="63108" i_length="337"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="63109" e_stop="63212" e_length="104"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="63213" i_stop="63349" i_length="137"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="63350" e_stop="63442" e_length="93"/>
          </exon>
          <intron i_serial="11" don_prob="0.889" acc_prob="0.994">
            <gDNA_intron_boundary i_start="63443" i_stop="64018" i_length="576"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="64019" e_stop="64087" e_length="69"/>
          </exon>
          <intron i_serial="12" don_prob="0.471" acc_prob="0.807">
            <gDNA_intron_boundary i_start="64088" i_stop="64677" i_length="590"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="64678" e_stop="64886" e_length="209"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57847" stop="58354"/>
              <exon start="58458" stop="58518"/>
              <exon start="59086" stop="59485"/>
              <exon start="59616" stop="59693"/>
              <exon start="59763" stop="59910"/>
              <exon start="60157" stop="60269"/>
              <exon start="60364" stop="60439"/>
              <exon start="61510" stop="61581"/>
              <exon start="62691" stop="62771"/>
              <exon start="63109" stop="63212"/>
              <exon start="63350" stop="63442"/>
              <exon start="64019" stop="64087"/>
              <exon start="64678" stop="64886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746164" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGTCTCCGAGTCTTTGAAATTGTCAATTTCAACTATAAGCTATAAAAGTAATTCCAAACGTGCGCTCACTCAACCAGTGCTCGCCGGCCGGCAACGAACTTCCATACTTGCTGAAAGAAGTAATTCCAGAAAGTTCCATTGATTTATTAAGCTTTATAATTTTGATTCTGAATGCTCTTTCTTTATGTGATGATTAGAGGTGATTTTTAAAAAAATATAGATTGAGAAATGGGGAACAAGAGAGTGATGTTACCGGCGAGTGAAGTTGACTTGACGGCGGTGAAGTACATACCAGAGAATATTCAAGGTTTCGGTTTTATCTTGAATGTGATATACCATTTGATTGAATTTTTGTTGTTACGATTGAACTATGTTTGCAATTTGTTCTTTCGGCAGCTCCACATTTGACTGGTTTCTGGTTGAAGTTGTTTGTGAAGTTCGTTGAAGCACCGGGTGTTGGATCTTTGATCATGAATCACCTTAAGAATGAAAACAAAATTGAAGAG : AAGCTGAAGTACACCGTCATACCGGAGGGTCCTATGTTTAAACCTGAATTTCCTCCTCAAG : AGCCAGAACCTGCTGTTGTAAGCCTGGAAGAAGACGTGAGGCCTGAAGACCGGGTTGGGCTAGCCTTGAAGTATCTTCCAGAATATGATCCGGCTAGCAATTGGAGTGGTGATTCAAGTGCACCATTCCGCTATTGGAAAATTCGTGATTATGCATATGCATACAGATCTAAGTTTACAACTCCATCTATGGAAAGGCACTTCTATGGTTGCTTGGTTTTTGTTTCTCTCTTCTAGTCTCTAGGATGAGAAGTTATTCCTTGTATTACAGGTTGCAGAGCGCTTCATCTCAGCCATTGAGGAGTTCAATAGTAAAAATCCTGCAGCACCACTATTAATTTCTTTTGACCCTGATGAATTAAGAAAGCAAGCTGCTGCTTCTACACAAAGATTTGAACAAG : GAAACCCATTGTCAATATTGGATGGGACCTTCATGGCAATTAAAGATGACATAGATTGCTATCCCCATCCTTCAAAGG : GAGCAACTACATGGATGCATGAGGTTCGTGAGGTAACGAAGGATGCTGTTTCTGTTTCAAGATTACGAAGTTGTGGCACAATTTTGGTTGGAAAGGCGAACATGCATGAGTTGGGCTTGGGCACCACTGGAAACAATGCAAACTATGG : GACTACACGAAATCCACATGATCCAGAGAGGTATACAGGAGGGTCTTCCTCAGGCCCTGCAGCTATTGTGGCTTCGGGACTGTGTTCTGCAGCTTTAGGGACAGATGGAGGAG : GTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTAGGTTTGAAGTCAACATATGGTCGAACTGACATGACAGG : GTCATTATGTGATGATGGAACGGTAGAAATAATTGGACCAATAGCCACAACAGTTGAGGACACCATACTTGT : TCCCTCCCTTGTGTACCTAATTTCCCCTCACGAGAGAGCTCGCGATCTCTGGAATCACTGCGCCTTGGAAAATATACAGAG : ACTGTAGAGATTGTAATACCAGAGTTGCATGAGATGCGCATTGCTCATATTGTTTCTATTGGGTCTGAATCATTGTGCTCACTGAATCCAGACTGTGGTGACGG : GAGAGGAGCAAGATTGACATATGATACTCGTACAAATCTGGCATTTTTTCGTTCATTTACTGCAGCAGATTATGTTGCTGCTCAGCGGCTTAG : GCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAAGGTGGATATCATTGTGACACCTACAACTGG : CATGACAGCACCCAGAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTGATTTGCAAGTTTCAGGTTTTTCCCTTAGTCACCTCTTACCAGATATCATCAACTATGGAGTTAGTTGGAACTATACAAAGGCTGTTTCTCTACTATTTGTATTCATGTATTCTATATTTCAGGAAATCTTATGCGGTTTATTATAACCGCAAATCTTCT</gDNA_template>
            <first_frame> E  V  S  E  S  L  K  L  S  I  S  T  I  S  Y  K  S  N  S  K  R  A  L  T  Q  P  V  L  A  G  R  Q  R  T  S  I  L  A  E  R  S  N  S  R  K  F  H  *  F  I  K  L  Y  N  F  D  S  E  C  S  F  F  M  *  *  L  E  V  I  F  K  K  I  *  I  E  K  W  G  T  R  E  *  C  Y  R  R  V  K  L  T  *  R  R  *  S  T  Y  Q  R  I  F  K  V  S  V  L  S  *  M  *  Y  T  I  *  L  N  F  C  C  Y  D  *  T  M  F  A  I  C  S  F  G  S  S  T  F  D  W  F  L  V  E  V  V  C  E  V  R  *  S  T  G  C  W  I  F  D  H  E  S  P  *  E  *  K  Q  N  *  R   : E  A  E  V  H  R  H  T  G  G  S  Y  V  *  T  *  I  S  S  S  R :   A  R  T  C  C  C  K  P  G  R  R  R  E  A  *  R  P  G  W  A  S  L  E  V  S  S  R  I  *  S  G  *  Q  L  E  W  *  F  K  C  T  I  P  L  L  E  N  S  *  L  C  I  C  I  Q  I  *  V  Y  N  S  I  Y  G  K  A  L  L  W  L  L  G  F  C  F  S  L  L  V  S  R  M  R  S  Y  S  L  Y  Y  R  L  Q  S  A  S  S  Q  P  L  R  S  S  I  V  K  I  L  Q  H  H  Y  *  F  L  L  T  L  M  N  *  E  S  K  L  L  L  L  H  K  D  L  N  K  :  E  T  H  C  Q  Y  W  M  G  P  S  W  Q  L  K  M  T  *  I  A  I  P  I  L  Q  R  :  E  Q  L  H  G  C  M  R  F  V  R  *  R  R  M  L  F  L  F  Q  D  Y  E  V  V  A  Q  F  W  L  E  R  R  T  C  M  S  W  A  W  A  P  L  E  T  M  Q  T  M   : G  L  H  E  I  H  M  I  Q  R  G  I  Q  E  G  L  P  Q  A  L  Q  L  L  W  L  R  D  C  V  L  Q  L  *  G  Q  M  E  E  :  V  Q  F  G  F  L  L  P  F  V  V  L  *  V  *  S  Q  H  M  V  E  L  T  *  Q   : G  H  Y  V  M  M  E  R  *  K  *  L  D  Q  *  P  Q  Q  L  R  T  P  Y  L   : F  P  P  L  C  T  *  F  P  L  T  R  E  L  A  I  S  G  I  T  A  P  W  K  I  Y  R   : D  C  R  D  C  N  T  R  V  A  *  D  A  H  C  S  Y  C  F  Y  W  V  *  I  I  V  L  T  E  S  R  L  W  *  R  :  E  R  S  K  I  D  I  *  Y  S  Y  K  S  G  I  F  S  F  I  Y  C  S  R  L  C  C  C  S  A  A  *  :  A  E  V  N  V  F  P  Y  G  D  F  Q  E  G  G  Y  H  C  D  T  Y  N  W  :  H  D  S  T  Q  N  S  T  K  C  S  *  S  W  G  D  *  F  A  S  F  R  F  F  P  *  S  P  L  T  R  Y  H  Q  L  W  S  *  L  E  L  Y  K  G  C  F  S  T  I  C  I  H  V  F  Y  I  S  G  N  L  M  R  F  I  I  T  A  N  L   </first_frame>
            <second_frame>  K  S  P  S  L  *  N  C  Q  F  Q  L  *  A  I  K  V  I  P  N  V  R  S  L  N  Q  C  S  P  A  G  N  E  L  P  Y  L  L  K  E  V  I  P  E  S  S  I  D  L  L  S  F  I  I  L  I  L  N  A  L  S  L  C  D  D  *  R  *  F  L  K  K  Y  R  L  R  N  G  E  Q  E  S  D  V  T  G  E  *  S  *  L  D  G  G  E  V  H  T  R  E  Y  S  R  F  R  F  Y  L  E  C  D  I  P  F  D  *  I  F  V  V  T  I  E  L  C  L  Q  F  V  L  S  A  A  P  H  L  T  G  F  W  L  K  L  F  V  K  F  V  E  A  P  G  V  G  S  L  I  M  N  H  L  K  N  E  N  K  I  E  E  :  K  L  K  Y  T  V  I  P  E  G  P  M  F  K  P  E  F  P  P  Q   : E  P  E  P  A  V  V  S  L  E  E  D  V  R  P  E  D  R  V  G  L  A  L  K  Y  L  P  E  Y  D  P  A  S  N  W  S  G  D  S  S  A  P  F  R  Y  W  K  I  R  D  Y  A  Y  A  Y  R  S  K  F  T  T  P  S  M  E  R  H  F  Y  G  C  L  V  F  V  S  L  F  *  S  L  G  *  E  V  I  P  C  I  T  G  C  R  A  L  H  L  S  H  *  G  V  Q  *  *  K  S  C  S  T  T  I  N  F  F  *  P  *  *  I  K  K  A  S  C  C  F  Y  T  K  I  *  T  R :   K  P  I  V  N  I  G  W  D  L  H  G  N  *  R  *  H  R  L  L  S  P  S  F  K  G :   S  N  Y  M  D  A  *  G  S  *  G  N  E  G  C  C  F  C  F  K  I  T  K  L  W  H  N  F  G  W  K  G  E  H  A  *  V  G  L  G  H  H  W  K  Q  C  K  L  W  :  D  Y  T  K  S  T  *  S  R  E  V  Y  R  R  V  F  L  R  P  C  S  Y  C  G  F  G  T  V  F  C  S  F  R  D  R  W  R  R :   F  S  S  D  S  F  F  P  L  W  C  C  R  F  E  V  N  I  W  S  N  *  H  D  R  :  V  I  M  *  *  W  N  G  R  N  N  W  T  N  S  H  N  S  *  G  H  H  T  C  :  S  L  P  C  V  P  N  F  P  S  R  E  S  S  R  S  L  E  S  L  R  L  G  K  Y  T  E  :  T  V  E  I  V  I  P  E  L  H  E  M  R  I  A  H  I  V  S  I  G  S  E  S  L  C  S  L  N  P  D  C  G  D  G :   R  G  A  R  L  T  Y  D  T  R  T  N  L  A  F  F  R  S  F  T  A  A  D  Y  V  A  A  Q  R  L  R :   R  R  L  M  Y  F  H  M  E  I  F  K  K  V  D  I  I  V  T  P  T  T  G :   M  T  A  P  R  I  P  P  S  A  L  K  V  G  E  T  D  L  Q  V  S  G  F  S  L  S  H  L  L  P  D  I  I  N  Y  G  V  S  W  N  Y  T  K  A  V  S  L  L  F  V  F  M  Y  S  I  F  Q  E  I  L  C  G  L  L  *  P  Q  I  F  </second_frame>
            <third_frame>   S  L  R  V  F  E  I  V  N  F  N  Y  K  L  *  K  *  F  Q  T  C  A  H  S  T  S  A  R  R  P  A  T  N  F  H  T  C  *  K  K  *  F  Q  K  V  P  L  I  Y  *  A  L  *  F  *  F  *  M  L  F  L  Y  V  M  I  R  G  D  F  *  K  N  I  D  *  E  M  G  N  K  R  V  M  L  P  A  S  E  V  D  L  T  A  V  K  Y  I  P  E  N  I  Q  G  F  G  F  I  L  N  V  I  Y  H  L  I  E  F  L  L  L  R  L  N  Y  V  C  N  L  F  F  R  Q  L  H  I  *  L  V  S  G  *  S  C  L  *  S  S  L  K  H  R  V  L  D  L  *  S  *  I  T  L  R  M  K  T  K  L  K  R :   S  *  S  T  P  S  Y  R  R  V  L  C  L  N  L  N  F  L  L  K  :  S  Q  N  L  L  L  *  A  W  K  K  T  *  G  L  K  T  G  L  G  *  P  *  S  I  F  Q  N  M  I  R  L  A  I  G  V  V  I  Q  V  H  H  S  A  I  G  K  F  V  I  M  H  M  H  T  D  L  S  L  Q  L  H  L  W  K  G  T  S  M  V  A  W  F  L  F  L  S  S  S  L  *  D  E  K  L  F  L  V  L  Q  V  A  E  R  F  I  S  A  I  E  E  F  N  S  K  N  P  A  A  P  L  L  I  S  F  D  P  D  E  L  R  K  Q  A  A  A  S  T  Q  R  F  E  Q   : G  N  P  L  S  I  L  D  G  T  F  M  A  I  K  D  D  I  D  C  Y  P  H  P  S  K   : G  A  T  T  W  M  H  E  V  R  E  V  T  K  D  A  V  S  V  S  R  L  R  S  C  G  T  I  L  V  G  K  A  N  M  H  E  L  G  L  G  T  T  G  N  N  A  N  Y  G :   T  T  R  N  P  H  D  P  E  R  Y  T  G  G  S  S  S  G  P  A  A  I  V  A  S  G  L  C  S  A  A  L  G  T  D  G  G   : G  S  V  R  I  P  S  S  L  C  G  V  V  G  L  K  S  T  Y  G  R  T  D  M  T  G :   S  L  C  D  D  G  T  V  E  I  I  G  P  I  A  T  T  V  E  D  T  I  L  V :   P  S  L  V  Y  L  I  S  P  H  E  R  A  R  D  L  W  N  H  C  A  L  E  N  I  Q  R :   L  *  R  L  *  Y  Q  S  C  M  R  C  A  L  L  I  L  F  L  L  G  L  N  H  C  A  H  *  I  Q  T  V  V  T   : G  E  E  Q  D  *  H  M  I  L  V  Q  I  W  H  F  F  V  H  L  L  Q  Q  I  M  L  L  L  S  G  L   : G  G  G  *  C  I  S  I  W  R  F  S  R  R  W  I  S  L  *  H  L  Q  L   : A  *  Q  H  P  E  F  H  Q  V  L  L  K  L  G  R  L  I  C  K  F  Q  V  F  P  L  V  T  S  Y  Q  I  S  S  T  M  E  L  V  G  T  I  Q  R  L  F  L  Y  Y  L  Y  S  C  I  L  Y  F  R  K  S  Y  A  V  Y  Y  N  R  K  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59329" stop="59485"/>
                    <exon start="59616" stop="59693"/>
                    <exon start="59763" stop="59910"/>
                    <exon start="60157" stop="60269"/>
                    <exon start="60364" stop="60439"/>
                    <exon start="61510" stop="61581"/>
                    <exon start="62691" stop="62771"/>
                    <exon start="63109" stop="63115"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEKLFLVLQVAERFISAIEEFNSKNPAAPLLISFDPDELRKQAAASTQRFEQGNPLSILDGTFMAIKDDIDCYPHPSKGATTWMHEVREVTKDAVSVSRLRSCGTILVGKANMHELGLGTTGNNANYGTTRNPHDPERYTGGSSSGPAAIVASGLCSAALGTDGGGSVRIPSSLCGVVGLKSTYGRTDMTGSLCDDGTVEIIGPIATTVEDTILVPSLVYLISPHERARDLWNHCALENIQRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58196" stop="58354"/>
                    <exon start="58458" stop="58518"/>
                    <exon start="59086" stop="59321"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFVVTIELCLQFVLSAAPHLTGFWLKLFVKFVEAPGVGSLIMNHLKNENKIEEKLKYTVIPEGPMFKPEFPPQEPEPAVVSLEEDVRPEDRVGLALKYLPEYDPASNWSGDSSAPFRYWKIRDYAYAYRSKFTTPSMERHFYGCLVFVSLF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64683" stop="64886"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHPEFHQVLLKLGRLICKFQVFPLVTSYQISSTMELVGTIQRLFLYYLYSCILYFRKSYAVYYNRKSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="69106" PGL_stop="77153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69106" e_stop="69236"/>
            <exon e_start="69329" e_stop="69429"/>
            <exon e_start="69522" e_stop="69631"/>
            <exon e_start="69704" e_stop="69764"/>
            <exon e_start="70694" e_stop="70884"/>
            <exon e_start="70964" e_stop="71093"/>
            <exon e_start="71224" e_stop="71301"/>
            <exon e_start="71372" e_stop="71519"/>
            <exon e_start="71792" e_stop="71904"/>
            <exon e_start="71999" e_stop="72074"/>
            <exon e_start="73409" e_stop="73480"/>
            <exon e_start="73887" e_stop="73938"/>
            <exon e_start="74237" e_stop="74317"/>
            <exon e_start="74397" e_stop="74480"/>
            <exon e_start="74651" e_stop="74754"/>
            <exon e_start="74877" e_stop="74969"/>
            <exon e_start="75333" e_stop="75401"/>
            <exon e_start="75791" e_stop="75855"/>
            <exon e_start="76004" e_stop="76065"/>
            <exon e_start="76360" e_stop="76455"/>
            <exon e_start="76578" e_stop="77153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.817" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.693" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.911" e_score="0.992"/>
          <exon-intron don_prob="0.994" acc_prob="0.841" e_score="0.987"/>
          <exon-intron don_prob="0.928" acc_prob="0.971" e_score="0.953"/>
          <exon-intron don_prob="0.000" acc_prob="0.765" e_score="0.947"/>
          <exon-intron don_prob="0.986" acc_prob="0.995" e_score="0.987"/>
          <exon-intron don_prob="0.946" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.723" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69106" e_stop="69236" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69237" i_stop="69328" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69329" e_stop="69429" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.881">
            <gDNA_intron_boundary i_start="69430" i_stop="69521" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69522" e_stop="69631" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.817">
            <gDNA_intron_boundary i_start="69632" i_stop="69703" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69704" e_stop="69764" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="69765" i_stop="70693" i_length="929"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70694" e_stop="70884" e_length="191"/>
          </exon>
          <intron i_serial="5" don_prob="0.693" acc_prob="0.993">
            <gDNA_intron_boundary i_start="70885" i_stop="70963" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="70964" e_stop="71093" e_length="130"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.911">
            <gDNA_intron_boundary i_start="71094" i_stop="71223" i_length="130"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="71224" e_stop="71301" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.841">
            <gDNA_intron_boundary i_start="71302" i_stop="71371" i_length="70"/>
          </intron>
          <exon e_serial="8" e_score="0.953">
            <gDNA_exon_boundary e_start="71372" e_stop="71519" e_length="148"/>
          </exon>
          <intron i_serial="8" don_prob="0.928" acc_prob="0.971">
            <gDNA_intron_boundary i_start="71520" i_stop="71791" i_length="272"/>
          </intron>
          <exon e_serial="9" e_score="0.947">
            <gDNA_exon_boundary e_start="71792" e_stop="71904" e_length="113"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.765">
            <gDNA_intron_boundary i_start="71905" i_stop="71998" i_length="94"/>
          </intron>
          <exon e_serial="10" e_score="0.987">
            <gDNA_exon_boundary e_start="71999" e_stop="72074" e_length="76"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="0.995">
            <gDNA_intron_boundary i_start="72075" i_stop="73408" i_length="1334"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="73409" e_stop="73480" e_length="72"/>
          </exon>
          <intron i_serial="11" don_prob="0.946" acc_prob="0.989">
            <gDNA_intron_boundary i_start="73481" i_stop="73886" i_length="406"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="73887" e_stop="73938" e_length="52"/>
          </exon>
          <intron i_serial="12" don_prob="0.987" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73939" i_stop="74236" i_length="298"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="74237" e_stop="74317" e_length="81"/>
          </exon>
          <intron i_serial="13" don_prob="0.997" acc_prob="0.980">
            <gDNA_intron_boundary i_start="74318" i_stop="74396" i_length="79"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="74397" e_stop="74480" e_length="84"/>
          </exon>
          <intron i_serial="14" don_prob="0.983" acc_prob="0.976">
            <gDNA_intron_boundary i_start="74481" i_stop="74650" i_length="170"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="74651" e_stop="74754" e_length="104"/>
          </exon>
          <intron i_serial="15" don_prob="0.992" acc_prob="0.991">
            <gDNA_intron_boundary i_start="74755" i_stop="74876" i_length="122"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="74877" e_stop="74969" e_length="93"/>
          </exon>
          <intron i_serial="16" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74970" i_stop="75332" i_length="363"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="75333" e_stop="75401" e_length="69"/>
          </exon>
          <intron i_serial="17" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="75402" i_stop="75790" i_length="389"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="75791" e_stop="75855" e_length="65"/>
          </exon>
          <intron i_serial="18" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="75856" i_stop="76003" i_length="148"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="76004" e_stop="76065" e_length="62"/>
          </exon>
          <intron i_serial="19" don_prob="0.921" acc_prob="0.723">
            <gDNA_intron_boundary i_start="76066" i_stop="76359" i_length="294"/>
          </intron>
          <exon e_serial="20" e_score="1.000">
            <gDNA_exon_boundary e_start="76360" e_stop="76455" e_length="96"/>
          </exon>
          <intron i_serial="20" don_prob="0.939" acc_prob="0.953">
            <gDNA_intron_boundary i_start="76456" i_stop="76577" i_length="122"/>
          </intron>
          <exon e_serial="21" e_score="0.978">
            <gDNA_exon_boundary e_start="76578" e_stop="77153" e_length="576"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69106" stop="69236"/>
              <exon start="69329" stop="69429"/>
              <exon start="69522" stop="69631"/>
              <exon start="69704" stop="69753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69115" stop="69236"/>
              <exon start="69329" stop="69429"/>
              <exon start="69522" stop="69631"/>
              <exon start="69704" stop="69764"/>
              <exon start="70694" stop="70884"/>
              <exon start="70964" stop="71093"/>
              <exon start="71224" stop="71250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69154" stop="69236"/>
              <exon start="69329" stop="69429"/>
              <exon start="69522" stop="69631"/>
              <exon start="69704" stop="69764"/>
              <exon start="70694" stop="70884"/>
              <exon start="70964" stop="71065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71053" stop="71093"/>
              <exon start="71224" stop="71301"/>
              <exon start="71372" stop="71519"/>
              <exon start="71792" stop="71904"/>
              <exon start="71999" stop="72074"/>
              <exon start="73409" stop="73480"/>
              <exon start="73887" stop="73938"/>
              <exon start="74237" stop="74317"/>
              <exon start="74397" stop="74476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73409" stop="73480"/>
              <exon start="73887" stop="73938"/>
              <exon start="74237" stop="74317"/>
              <exon start="74397" stop="74480"/>
              <exon start="74651" stop="74754"/>
              <exon start="74877" stop="74920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73409" stop="73480"/>
              <exon start="73887" stop="73938"/>
              <exon start="74237" stop="74317"/>
              <exon start="74397" stop="74432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73410" stop="73480"/>
              <exon start="73887" stop="73938"/>
              <exon start="74237" stop="74317"/>
              <exon start="74397" stop="74480"/>
              <exon start="74651" stop="74754"/>
              <exon start="74877" stop="74926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74237" stop="74317"/>
              <exon start="74397" stop="74480"/>
              <exon start="74651" stop="74754"/>
              <exon start="74877" stop="74969"/>
              <exon start="75333" stop="75401"/>
              <exon start="75791" stop="75855"/>
              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76455"/>
              <exon start="76578" stop="76647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74415" stop="74480"/>
              <exon start="74651" stop="74754"/>
              <exon start="74877" stop="74969"/>
              <exon start="75333" stop="75401"/>
              <exon start="75791" stop="75855"/>
              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74461" stop="74480"/>
              <exon start="74651" stop="74754"/>
              <exon start="74877" stop="74969"/>
              <exon start="75333" stop="75401"/>
              <exon start="75791" stop="75855"/>
              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76455"/>
              <exon start="76578" stop="76812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424081" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74728" stop="74754"/>
              <exon start="74877" stop="74969"/>
              <exon start="75333" stop="75401"/>
              <exon start="75791" stop="75855"/>
              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74729" stop="74754"/>
              <exon start="74877" stop="74969"/>
              <exon start="75333" stop="75401"/>
              <exon start="75791" stop="75855"/>
              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76455"/>
              <exon start="76578" stop="76816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74746" stop="74754"/>
              <exon start="74877" stop="74969"/>
              <exon start="75333" stop="75401"/>
              <exon start="75791" stop="75855"/>
              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76455"/>
              <exon start="76578" stop="76697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74951" stop="74969"/>
              <exon start="75333" stop="75401"/>
              <exon start="75791" stop="75855"/>
              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76455"/>
              <exon start="76578" stop="76938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75791" stop="75855"/>
              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76455"/>
              <exon start="76578" stop="76883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76425" stop="76455"/>
              <exon start="76578" stop="76986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76667" stop="76972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76805" stop="77153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269789" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAACAGCCAATTGGGTTTGGTTACTCGTAAATTTTAAACGTGCAGTCACTTGAGCACGTTTTCATTAACCAGTGCTCGCTGGCCCGGCGACGAGCTTCGGTTCTTGCTGAAAGCATTTACTTATTGTT : ATTGAGTTACTGTATCAAGAAAATGGGGAACAAGCGTGTGATGCTACCGGCGAGTGAAATTGACTTGACGGCGGTGAAGTACATACCGGAGAATATTCAAG : CTCCACATTTGACTGGTTTCTGGTTCAAGTTCTTTCTGAACCTGGCTGAAGTACCGGGTATTGGATCTTTGATTGTGAATCGCCTCAAGAATGATAACAAATTCGACGAG : AAGCTGAAGTACACCGTCATACCGGAGTACCCTATGTTTAAACCGGAATTTCCTCCTCAAG : AGCCAGAACCTGCTGTTGTCAGCATCGAAGAAGACGCGAAGCCTGAAGACCGGGTTGAGCTAGCCTTAAAGTGTCTTCCAGAATATGATCCAGCTAGCAATTGGAGTGGTGATACAACCACATCATTTCGCTATTGGAAGATTCGTGATTATGCATATGCATACAGATCTAAGTTTACAACTCCATCGATG : GTTGCAGAGCGCTTCATCTCAGCTATTGAGGAGTTCAACAATAAGAATCCCACAACCCCACTATTAATTTCTTTTGACCCTGACGATGTTAGAAAGCAAGCTGCTGCTTCTACACAGAGATTTGAACAAG : GGAATCCACTCTCAATCTTGGATGGGATTTTCATGGCAATCAAAGACGACATAGATTGCTATTCTCACCCATCAAAGG : GAGCAACTACATGGATGCATGAGGTTCGTGAGGTAAAGAAGGATGCTGTTTCTGTGTCAAGATTACGCAGTTGTGGAGCAATTTTGGTTGGAAAGGCGAACATGCATGAGTTGGGATTGGGTACTACTGGAAATAACGCAAACTATGG : GACTACACGGAACCCACACGATCCAGATAGGTACACAGGTGGCTCTTCCTCCGGCCCTGCAGCTATTGTGGCTTTGGGATTGTGTTCTGCTGCTTTGGGGACGGATGGAGGAG : GTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTGGGATTAAAGTCAACATATGGTCGAACTGACATGACCGG : GTCATTATGTGGTGATGGAACAGTGGCAATTATTGGACCGATTGCTACAACAGTTGAGGACACCATACTTGT : GTATGCAGCAATTTTGGGGTCCTCTCCCGCTGATAGAATCTCTTTGAGACCG : TCCCTCCCTTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAG : TGGTTTAATGATGTCTTCTCAATTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCAGCTATCAGAAGAGCATGGATGCAGA : ATCGTAGAAATTGTAATACCAGAGTTGCATGAGATGCGCATAGCTCATGTTGTTTCTATTGGATCGGAAGCATTATGCGCACTGAATCCAGACTGTTGTGATGG : GAAGGGAGAGAGATTGACATATGATACTCGCACCAATCTGACACTTTTTCGTTCATTTACAGCAGCAGACTATGTTGCTTCTCAGCGGCTTAG : GCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATCATTGTGACACCAACAACTGG : CATGACAGCACCCATAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTAATATGCAAGTTACAG : GAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCT : GTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGGCCCTGGTGTGAAGCTTCCATTTTGCGCTTGGCGGCTGCAATTGAG : GAAACTTGTGCTGAGCCCAAGAAGAAACCACTGCAATATTATGACATTCTGAAAGGGAACTAGAAATCAAGCTTAGCCTGCAGGAGCCCGGGGTAAACAGTAATGTGGATTATGAAGCTTTAAGAAGATGTGAATTCATTTATCAAGACTTTGGTGATTCATAGAAACCACCTTGAAAATTGAACGTACTGAGTTTGCGGTACCACTTTATGAAATAAAGCTGATGAAAAGGTTTTGGCTAATCAATACAACCATTTGCAATGCAAATAGAATCCAGAAACAGGTGATGCCCGCATAGTTGCAGTGAAATTGTTAAACCTTGTATAACAACATTATGTTCCTAAACCCCACAATATTTGATCTCGAAAGGGAGAAAATAAGAACACGAATTTCTAATTGACCCTGATATCAGCTGAAAGAAATCATGTTGCATAAGCCGAGACATTCTCTTGGCTACTCTGTGTACTTGAGTACTTATTCAACAGTCAATGCGAGAGTCTGGAAACATGTAGAAACTAATACTTGCCACATTCTTCATTTACATCAGAGTGAGCTCCTATTTACTCTGTGAAACTA</gDNA_template>
            <first_frame> F  E  Q  P  I  G  F  G  Y  S  *  I  L  N  V  Q  S  L  E  H  V  F  I  N  Q  C  S  L  A  R  R  R  A  S  V  L  A  E  S  I  Y  L  L  L :   L  S  Y  C  I  K  K  M  G  N  K  R  V  M  L  P  A  S  E  I  D  L  T  A  V  K  Y  I  P  E  N  I  Q   : A  P  H  L  T  G  F  W  F  K  F  F  L  N  L  A  E  V  P  G  I  G  S  L  I  V  N  R  L  K  N  D  N  K  F  D  E  :  K  L  K  Y  T  V  I  P  E  Y  P  M  F  K  P  E  F  P  P  Q   : E  P  E  P  A  V  V  S  I  E  E  D  A  K  P  E  D  R  V  E  L  A  L  K  C  L  P  E  Y  D  P  A  S  N  W  S  G  D  T  T  T  S  F  R  Y  W  K  I  R  D  Y  A  Y  A  Y  R  S  K  F  T  T  P  S  M  :  V  A  E  R  F  I  S  A  I  E  E  F  N  N  K  N  P  T  T  P  L  L  I  S  F  D  P  D  D  V  R  K  Q  A  A  A  S  T  Q  R  F  E  Q   : G  N  P  L  S  I  L  D  G  I  F  M  A  I  K  D  D  I  D  C  Y  S  H  P  S  K   : G  A  T  T  W  M  H  E  V  R  E  V  K  K  D  A  V  S  V  S  R  L  R  S  C  G  A  I  L  V  G  K  A  N  M  H  E  L  G  L  G  T  T  G  N  N  A  N  Y  G :   T  T  R  N  P  H  D  P  D  R  Y  T  G  G  S  S  S  G  P  A  A  I  V  A  L  G  L  C  S  A  A  L  G  T  D  G  G   : G  S  V  R  I  P  S  S  L  C  G  V  V  G  L  K  S  T  Y  G  R  T  D  M  T  G :   S  L  C  G  D  G  T  V  A  I  I  G  P  I  A  T  T  V  E  D  T  I  L  V :   Y  A  A  I  L  G  S  S  P  A  D  R  I  S  L  R  P  :  S  L  P  C  V  P  N  F  S  S  Q  E  S  L  Q  S  V  E  S  L  R  L  G  K  Y  T  E  :  W  F  N  D  V  F  S  I  D  I  S  D  K  C  G  N  V  L  S  Q  L  S  E  E  H  G  C  R  :  I  V  E  I  V  I  P  E  L  H  E  M  R  I  A  H  V  V  S  I  G  S  E  A  L  C  A  L  N  P  D  C  C  D  G :   K  G  E  R  L  T  Y  D  T  R  T  N  L  T  L  F  R  S  F  T  A  A  D  Y  V  A  S  Q  R  L  R :   R  R  L  M  Y  F  H  M  E  I  F  K  R  V  D  I  I  V  T  P  T  T  G :   M  T  A  P  I  I  P  P  S  A  L  K  V  G  E  T  N  M  Q  V  T   : G  N  L  M  R  F  I  I  T  A  N  L  L  G  L  P  A  V  T  V  P  :  V  G  Y  D  K  Q  G  L  P  I  G  I  Q  L  I  G  R  P  W  C  E  A  S  I  L  R  L  A  A  A  I  E  :  E  T  C  A  E  P  K  K  K  P  L  Q  Y  Y  D  I  L  K  G  N  *  K  S  S  L  A  C  R  S  P  G  *  T  V  M  W  I  M  K  L  *  E  D  V  N  S  F  I  K  T  L  V  I  H  R  N  H  L  E  N  *  T  Y  *  V  C  G  T  T  L  *  N  K  A  D  E  K  V  L  A  N  Q  Y  N  H  L  Q  C  K  *  N  P  E  T  G  D  A  R  I  V  A  V  K  L  L  N  L  V  *  Q  H  Y  V  P  K  P  H  N  I  *  S  R  K  G  E  N  K  N  T  N  F  *  L  T  L  I  S  A  E  R  N  H  V  A  *  A  E  T  F  S  W  L  L  C  V  L  E  Y  L  F  N  S  Q  C  E  S  L  E  T  C  R  N  *  Y  L  P  H  S  S  F  T  S  E  *  A  P  I  Y  S  V  K  L </first_frame>
            <second_frame>  L  N  S  Q  L  G  L  V  T  R  K  F  *  T  C  S  H  L  S  T  F  S  L  T  S  A  R  W  P  G  D  E  L  R  F  L  L  K  A  F  T  Y  C   : Y  *  V  T  V  S  R  K  W  G  T  S  V  *  C  Y  R  R  V  K  L  T  *  R  R  *  S  T  Y  R  R  I  F  K  :  L  H  I  *  L  V  S  G  S  S  S  F  *  T  W  L  K  Y  R  V  L  D  L  *  L  *  I  A  S  R  M  I  T  N  S  T  R :   S  *  S  T  P  S  Y  R  S  T  L  C  L  N  R  N  F  L  L  K  :  S  Q  N  L  L  L  S  A  S  K  K  T  R  S  L  K  T  G  L  S  *  P  *  S  V  F  Q  N  M  I  Q  L  A  I  G  V  V  I  Q  P  H  H  F  A  I  G  R  F  V  I  M  H  M  H  T  D  L  S  L  Q  L  H  R  W :   L  Q  S  A  S  S  Q  L  L  R  S  S  T  I  R  I  P  Q  P  H  Y  *  F  L  L  T  L  T  M  L  E  S  K  L  L  L  L  H  R  D  L  N  K  :  G  I  H  S  Q  S  W  M  G  F  S  W  Q  S  K  T  T  *  I  A  I  L  T  H  Q  R  :  E  Q  L  H  G  C  M  R  F  V  R  *  R  R  M  L  F  L  C  Q  D  Y  A  V  V  E  Q  F  W  L  E  R  R  T  C  M  S  W  D  W  V  L  L  E  I  T  Q  T  M   : G  L  H  G  T  H  T  I  Q  I  G  T  Q  V  A  L  P  P  A  L  Q  L  L  W  L  W  D  C  V  L  L  L  W  G  R  M  E  E  :  V  Q  F  G  F  L  L  P  F  V  V  L  W  D  *  S  Q  H  M  V  E  L  T  *  P   : G  H  Y  V  V  M  E  Q  W  Q  L  L  D  R  L  L  Q  Q  L  R  T  P  Y  L   : C  M  Q  Q  F  W  G  P  L  P  L  I  E  S  L  *  D  R :   P  S  L  V  Y  L  I  S  L  H  K  R  A  C  N  L  W  N  R  C  A  L  E  N  I  Q  S :   G  L  M  M  S  S  Q  L  I  Y  L  T  S  A  G  M  F  S  V  S  Y  Q  K  S  M  D  A  E :   S  *  K  L  *  Y  Q  S  C  M  R  C  A  *  L  M  L  F  L  L  D  R  K  H  Y  A  H  *  I  Q  T  V  V  M   : G  R  E  R  D  *  H  M  I  L  A  P  I  *  H  F  F  V  H  L  Q  Q  Q  T  M  L  L  L  S  G  L   : G  G  G  *  C  I  S  I  W  R  F  S  R  G  W  I  S  L  *  H  Q  Q  L   : A  *  Q  H  P  *  F  H  Q  V  L  L  K  L  G  R  L  I  C  K  L  Q  :  E  I  L  C  G  S  L  *  Q  Q  I  F  W  D  F  L  Q  L  L  S  L :   L  V  M  T  S  K  G  F  P  *  V  Y  N  S  L  A  G  P  G  V  K  L  P  F  C  A  W  R  L  Q  L  R :   K  L  V  L  S  P  R  R  N  H  C  N  I  M  T  F  *  K  G  T  R  N  Q  A  *  P  A  G  A  R  G  K  Q  *  C  G  L  *  S  F  K  K  M  *  I  H  L  S  R  L  W  *  F  I  E  T  T  L  K  I  E  R  T  E  F  A  V  P  L  Y  E  I  K  L  M  K  R  F  W  L  I  N  T  T  I  C  N  A  N  R  I  Q  K  Q  V  M  P  A  *  L  Q  *  N  C  *  T  L  Y  N  N  I  M  F  L  N  P  T  I  F  D  L  E  R  E  K  I  R  T  R  I  S  N  *  P  *  Y  Q  L  K  E  I  M  L  H  K  P  R  H  S  L  G  Y  S  V  Y  L  S  T  Y  S  T  V  N  A  R  V  W  K  H  V  E  T  N  T  C  H  I  L  H  L  H  Q  S  E  L  L  F  T  L  *  N   </second_frame>
            <third_frame>   *  T  A  N  W  V  W  L  L  V  N  F  K  R  A  V  T  *  A  R  F  H  *  P  V  L  A  G  P  A  T  S  F  G  S  C  *  K  H  L  L  I  V  :  I  E  L  L  Y  Q  E  N  G  E  Q  A  C  D  A  T  G  E  *  N  *  L  D  G  G  E  V  H  T  G  E  Y  S  S :   S  T  F  D  W  F  L  V  Q  V  L  S  E  P  G  *  S  T  G  Y  W  I  F  D  C  E  S  P  Q  E  *  *  Q  I  R  R   : E  A  E  V  H  R  H  T  G  V  P  Y  V  *  T  G  I  S  S  S  R :   A  R  T  C  C  C  Q  H  R  R  R  R  E  A  *  R  P  G  *  A  S  L  K  V  S  S  R  I  *  S  S  *  Q  L  E  W  *  Y  N  H  I  I  S  L  L  E  D  S  *  L  C  I  C  I  Q  I  *  V  Y  N  S  I  D   : G  C  R  A  L  H  L  S  Y  *  G  V  Q  Q  *  E  S  H  N  P  T  I  N  F  F  *  P  *  R  C  *  K  A  S  C  C  F  Y  T  E  I  *  T  R :   E  S  T  L  N  L  G  W  D  F  H  G  N  Q  R  R  H  R  L  L  F  S  P  I  K  G :   S  N  Y  M  D  A  *  G  S  *  G  K  E  G  C  C  F  C  V  K  I  T  Q  L  W  S  N  F  G  W  K  G  E  H  A  *  V  G  I  G  Y  Y  W  K  *  R  K  L  W  :  D  Y  T  E  P  T  R  S  R  *  V  H  R  W  L  F  L  R  P  C  S  Y  C  G  F  G  I  V  F  C  C  F  G  D  G  W  R  R :   F  S  S  D  S  F  F  P  L  W  C  C  G  I  K  V  N  I  W  S  N  *  H  D  R  :  V  I  M  W  *  W  N  S  G  N  Y  W  T  D  C  Y  N  S  *  G  H  H  T  C  :  V  C  S  N  F  G  V  L  S  R  *  *  N  L  F  E  T   : V  P  P  L  C  T  *  F  L  F  T  R  E  L  A  I  C  G  I  A  A  P  W  K  I  Y  R   : V  V  *  *  C  L  L  N  *  Y  I  *  Q  V  R  E  C  S  Q  S  A  I  R  R  A  W  M  Q   : N  R  R  N  C  N  T  R  V  A  *  D  A  H  S  S  C  C  F  Y  W  I  G  S  I  M  R  T  E  S  R  L  L  *  W  :  E  G  R  E  I  D  I  *  Y  S  H  Q  S  D  T  F  S  F  I  Y  S  S  R  L  C  C  F  S  A  A  *  :  A  E  V  N  V  F  P  Y  G  D  F  Q  E  G  G  Y  H  C  D  T  N  N  W  :  H  D  S  T  H  N  S  T  K  C  S  *  S  W  G  D  *  Y  A  S  Y  R :   K  S  Y  A  V  H  Y  N  S  K  S  S  G  T  S  C  S  Y  C  P   : C  W  L  *  Q  A  R  A  S  H  R  Y  T  T  H  W  P  A  L  V  *  S  F  H  F  A  L  G  G  C  N  *   : G  N  L  C  *  A  Q  E  E  T  T  A  I  L  *  H  S  E  R  E  L  E  I  K  L  S  L  Q  E  P  G  V  N  S  N  V  D  Y  E  A  L  R  R  C  E  F  I  Y  Q  D  F  G  D  S  *  K  P  P  *  K  L  N  V  L  S  L  R  Y  H  F  M  K  *  S  *  *  K  G  F  G  *  S  I  Q  P  F  A  M  Q  I  E  S  R  N  R  *  C  P  H  S  C  S  E  I  V  K  P  C  I  T  T  L  C  S  *  T  P  Q  Y  L  I  S  K  G  R  K  *  E  H  E  F  L  I  D  P  D  I  S  *  K  K  S  C  C  I  S  R  D  I  L  L  A  T  L  C  T  *  V  L  I  Q  Q  S  M  R  E  S  G  N  M  *  K  L  I  L  A  T  F  F  I  Y  I  R  V  S  S  Y  L  L  C  E  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69139" stop="69236"/>
                    <exon start="69329" stop="69429"/>
                    <exon start="69522" stop="69631"/>
                    <exon start="69704" stop="69764"/>
                    <exon start="70694" stop="70884"/>
                    <exon start="70964" stop="71093"/>
                    <exon start="71224" stop="71301"/>
                    <exon start="71372" stop="71519"/>
                    <exon start="71792" stop="71904"/>
                    <exon start="71999" stop="72074"/>
                    <exon start="73409" stop="73480"/>
                    <exon start="73887" stop="73938"/>
                    <exon start="74237" stop="74317"/>
                    <exon start="74397" stop="74480"/>
                    <exon start="74651" stop="74754"/>
                    <exon start="74877" stop="74969"/>
                    <exon start="75333" stop="75401"/>
                    <exon start="75791" stop="75855"/>
                    <exon start="76004" stop="76065"/>
                    <exon start="76360" stop="76455"/>
                    <exon start="76578" stop="76640"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1944</number_coding_nucleotides>
                  <number_encoded_amino_acids>648</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILNVQSLEHVFINQCSLARRRASVLAESIYLLLLSYCIKKMGNKRVMLPASEIDLTAVKYIPENIQAPHLTGFWFKFFLNLAEVPGIGSLIVNRLKNDNKFDEKLKYTVIPEYPMFKPEFPPQEPEPAVVSIEEDAKPEDRVELALKCLPEYDPASNWSGDTTTSFRYWKIRDYAYAYRSKFTTPSMVAERFISAIEEFNNKNPTTPLLISFDPDDVRKQAAASTQRFEQGNPLSILDGIFMAIKDDIDCYSHPSKGATTWMHEVREVKKDAVSVSRLRSCGAILVGKANMHELGLGTTGNNANYGTTRNPHDPDRYTGGSSSGPAAIVALGLCSAALGTDGGGSVRIPSSLCGVVGLKSTYGRTDMTGSLCGDGTVAIIGPIATTVEDTILVYAAILGSSPADRISLRPSLPCVPNFSSQESLQSVESLRLGKYTEWFNDVFSIDISDKCGNVLSQLSEEHGCRIVEIVIPELHEMRIAHVVSIGSEALCALNPDCCDGKGERLTYDTRTNLTLFRSFTAADYVASQRLRRRLMYFHMEIFKRVDIIVTPTTGMTAPIIPPSALKVGETNMQVTGNLMRFIITANLLGLPAVTVPVGYDKQGLPIGIQLIGRPWCEASILRLAAAIEETCAEPKKKPLQYYDILKGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="69157" e_stop="69429"/>
            <exon e_start="69522" e_stop="69631"/>
            <exon e_start="69704" e_stop="69764"/>
            <exon e_start="70694" e_stop="70884"/>
            <exon e_start="70964" e_stop="71093"/>
            <exon e_start="71224" e_stop="71301"/>
            <exon e_start="71372" e_stop="71519"/>
            <exon e_start="71792" e_stop="71904"/>
            <exon e_start="71999" e_stop="72074"/>
            <exon e_start="73409" e_stop="73480"/>
            <exon e_start="73887" e_stop="73938"/>
            <exon e_start="74237" e_stop="74317"/>
            <exon e_start="74397" e_stop="74480"/>
            <exon e_start="74651" e_stop="74754"/>
            <exon e_start="74877" e_stop="74969"/>
            <exon e_start="75333" e_stop="75401"/>
            <exon e_start="75791" e_stop="75855"/>
            <exon e_start="76004" e_stop="76065"/>
            <exon e_start="76360" e_stop="76455"/>
            <exon e_start="76578" e_stop="77153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.817" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.693" acc_prob="0.993" e_score="0.979"/>
          <exon-intron don_prob="0.998" acc_prob="0.911" e_score="0.898"/>
          <exon-intron don_prob="0.994" acc_prob="0.841" e_score="0.987"/>
          <exon-intron don_prob="0.928" acc_prob="0.971" e_score="0.953"/>
          <exon-intron don_prob="0.000" acc_prob="0.765" e_score="0.947"/>
          <exon-intron don_prob="0.986" acc_prob="0.995" e_score="0.987"/>
          <exon-intron don_prob="0.946" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.723" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69157" e_stop="69429" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.881">
            <gDNA_intron_boundary i_start="69430" i_stop="69521" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69522" e_stop="69631" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.817">
            <gDNA_intron_boundary i_start="69632" i_stop="69703" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69704" e_stop="69764" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="69765" i_stop="70693" i_length="929"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="70694" e_stop="70884" e_length="191"/>
          </exon>
          <intron i_serial="4" don_prob="0.693" acc_prob="0.993">
            <gDNA_intron_boundary i_start="70885" i_stop="70963" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="0.898">
            <gDNA_exon_boundary e_start="70964" e_stop="71093" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.911">
            <gDNA_intron_boundary i_start="71094" i_stop="71223" i_length="130"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="71224" e_stop="71301" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.841">
            <gDNA_intron_boundary i_start="71302" i_stop="71371" i_length="70"/>
          </intron>
          <exon e_serial="7" e_score="0.953">
            <gDNA_exon_boundary e_start="71372" e_stop="71519" e_length="148"/>
          </exon>
          <intron i_serial="7" don_prob="0.928" acc_prob="0.971">
            <gDNA_intron_boundary i_start="71520" i_stop="71791" i_length="272"/>
          </intron>
          <exon e_serial="8" e_score="0.947">
            <gDNA_exon_boundary e_start="71792" e_stop="71904" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.765">
            <gDNA_intron_boundary i_start="71905" i_stop="71998" i_length="94"/>
          </intron>
          <exon e_serial="9" e_score="0.987">
            <gDNA_exon_boundary e_start="71999" e_stop="72074" e_length="76"/>
          </exon>
          <intron i_serial="9" don_prob="0.986" acc_prob="0.995">
            <gDNA_intron_boundary i_start="72075" i_stop="73408" i_length="1334"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="73409" e_stop="73480" e_length="72"/>
          </exon>
          <intron i_serial="10" don_prob="0.946" acc_prob="0.989">
            <gDNA_intron_boundary i_start="73481" i_stop="73886" i_length="406"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="73887" e_stop="73938" e_length="52"/>
          </exon>
          <intron i_serial="11" don_prob="0.987" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73939" i_stop="74236" i_length="298"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="74237" e_stop="74317" e_length="81"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.980">
            <gDNA_intron_boundary i_start="74318" i_stop="74396" i_length="79"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="74397" e_stop="74480" e_length="84"/>
          </exon>
          <intron i_serial="13" don_prob="0.983" acc_prob="0.976">
            <gDNA_intron_boundary i_start="74481" i_stop="74650" i_length="170"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="74651" e_stop="74754" e_length="104"/>
          </exon>
          <intron i_serial="14" don_prob="0.992" acc_prob="0.991">
            <gDNA_intron_boundary i_start="74755" i_stop="74876" i_length="122"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="74877" e_stop="74969" e_length="93"/>
          </exon>
          <intron i_serial="15" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74970" i_stop="75332" i_length="363"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="75333" e_stop="75401" e_length="69"/>
          </exon>
          <intron i_serial="16" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="75402" i_stop="75790" i_length="389"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="75791" e_stop="75855" e_length="65"/>
          </exon>
          <intron i_serial="17" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="75856" i_stop="76003" i_length="148"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="76004" e_stop="76065" e_length="62"/>
          </exon>
          <intron i_serial="18" don_prob="0.921" acc_prob="0.723">
            <gDNA_intron_boundary i_start="76066" i_stop="76359" i_length="294"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="76360" e_stop="76455" e_length="96"/>
          </exon>
          <intron i_serial="19" don_prob="0.939" acc_prob="0.953">
            <gDNA_intron_boundary i_start="76456" i_stop="76577" i_length="122"/>
          </intron>
          <exon e_serial="20" e_score="0.978">
            <gDNA_exon_boundary e_start="76578" e_stop="77153" e_length="576"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69157" stop="69429"/>
              <exon start="69522" stop="69631"/>
              <exon start="69704" stop="69764"/>
              <exon start="70694" stop="70884"/>
              <exon start="70964" stop="71071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71053" stop="71093"/>
              <exon start="71224" stop="71301"/>
              <exon start="71372" stop="71519"/>
              <exon start="71792" stop="71904"/>
              <exon start="71999" stop="72074"/>
              <exon start="73409" stop="73480"/>
              <exon start="73887" stop="73938"/>
              <exon start="74237" stop="74317"/>
              <exon start="74397" stop="74476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73409" stop="73480"/>
              <exon start="73887" stop="73938"/>
              <exon start="74237" stop="74317"/>
              <exon start="74397" stop="74480"/>
              <exon start="74651" stop="74754"/>
              <exon start="74877" stop="74920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73409" stop="73480"/>
              <exon start="73887" stop="73938"/>
              <exon start="74237" stop="74317"/>
              <exon start="74397" stop="74432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73410" stop="73480"/>
              <exon start="73887" stop="73938"/>
              <exon start="74237" stop="74317"/>
              <exon start="74397" stop="74480"/>
              <exon start="74651" stop="74754"/>
              <exon start="74877" stop="74926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74237" stop="74317"/>
              <exon start="74397" stop="74480"/>
              <exon start="74651" stop="74754"/>
              <exon start="74877" stop="74969"/>
              <exon start="75333" stop="75401"/>
              <exon start="75791" stop="75855"/>
              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76455"/>
              <exon start="76578" stop="76647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74415" stop="74480"/>
              <exon start="74651" stop="74754"/>
              <exon start="74877" stop="74969"/>
              <exon start="75333" stop="75401"/>
              <exon start="75791" stop="75855"/>
              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74461" stop="74480"/>
              <exon start="74651" stop="74754"/>
              <exon start="74877" stop="74969"/>
              <exon start="75333" stop="75401"/>
              <exon start="75791" stop="75855"/>
              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76455"/>
              <exon start="76578" stop="76812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424081" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74728" stop="74754"/>
              <exon start="74877" stop="74969"/>
              <exon start="75333" stop="75401"/>
              <exon start="75791" stop="75855"/>
              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74729" stop="74754"/>
              <exon start="74877" stop="74969"/>
              <exon start="75333" stop="75401"/>
              <exon start="75791" stop="75855"/>
              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76455"/>
              <exon start="76578" stop="76816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74746" stop="74754"/>
              <exon start="74877" stop="74969"/>
              <exon start="75333" stop="75401"/>
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              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76455"/>
              <exon start="76578" stop="76697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74951" stop="74969"/>
              <exon start="75333" stop="75401"/>
              <exon start="75791" stop="75855"/>
              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76455"/>
              <exon start="76578" stop="76938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75791" stop="75855"/>
              <exon start="76004" stop="76065"/>
              <exon start="76360" stop="76455"/>
              <exon start="76578" stop="76883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76425" stop="76455"/>
              <exon start="76578" stop="76986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76667" stop="76972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76805" stop="77153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269789" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGAGCACGTTTTCATTAACCAGTGCTCGCTGGCCCGGCGACGAGCTTCGGTTCTTGCTGAAAGCATTTACTTATTGTTGTGTGTGATAAGTTCCGTAGTATTGTATATGATTTTCTTGATTTTTATGTATCTTTATTTGTGTGATCATGATTATGGTGAATTATTGATAGATTGAGTTACTGTATCAAGAAAATGGGGAACAAGCGTGTGATGCTACCGGCGAGTGAAATTGACTTGACGGCGGTGAAGTACATACCGGAGAATATTCAAG : CTCCACATTTGACTGGTTTCTGGTTCAAGTTCTTTCTGAACCTGGCTGAAGTACCGGGTATTGGATCTTTGATTGTGAATCGCCTCAAGAATGATAACAAATTCGACGAG : AAGCTGAAGTACACCGTCATACCGGAGTACCCTATGTTTAAACCGGAATTTCCTCCTCAAG : AGCCAGAACCTGCTGTTGTCAGCATCGAAGAAGACGCGAAGCCTGAAGACCGGGTTGAGCTAGCCTTAAAGTGTCTTCCAGAATATGATCCAGCTAGCAATTGGAGTGGTGATACAACCACATCATTTCGCTATTGGAAGATTCGTGATTATGCATATGCATACAGATCTAAGTTTACAACTCCATCGATG : GTTGCAGAGCGCTTCATCTCAGCTATTGAGGAGTTCAACAATAAGAATCCCACAACCCCACTATTAATTTCTTTTGACCCTGACGATGTTAGAAAGCAAGCTGCTGCTTCTACACAGAGATTTGAACAAG : GGAATCCACTCTCAATCTTGGATGGGATTTTCATGGCAATCAAAGACGACATAGATTGCTATTCTCACCCATCAAAGG : GAGCAACTACATGGATGCATGAGGTTCGTGAGGTAAAGAAGGATGCTGTTTCTGTGTCAAGATTACGCAGTTGTGGAGCAATTTTGGTTGGAAAGGCGAACATGCATGAGTTGGGATTGGGTACTACTGGAAATAACGCAAACTATGG : GACTACACGGAACCCACACGATCCAGATAGGTACACAGGTGGCTCTTCCTCCGGCCCTGCAGCTATTGTGGCTTTGGGATTGTGTTCTGCTGCTTTGGGGACGGATGGAGGAG : GTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTGGGATTAAAGTCAACATATGGTCGAACTGACATGACCGG : GTCATTATGTGGTGATGGAACAGTGGCAATTATTGGACCGATTGCTACAACAGTTGAGGACACCATACTTGT : GTATGCAGCAATTTTGGGGTCCTCTCCCGCTGATAGAATCTCTTTGAGACCG : TCCCTCCCTTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAG : TGGTTTAATGATGTCTTCTCAATTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCAGCTATCAGAAGAGCATGGATGCAGA : ATCGTAGAAATTGTAATACCAGAGTTGCATGAGATGCGCATAGCTCATGTTGTTTCTATTGGATCGGAAGCATTATGCGCACTGAATCCAGACTGTTGTGATGG : GAAGGGAGAGAGATTGACATATGATACTCGCACCAATCTGACACTTTTTCGTTCATTTACAGCAGCAGACTATGTTGCTTCTCAGCGGCTTAG : GCGGAGGTTAATGTATTTCCATATGGAGATTTTCAAGAGGGTGGATATCATTGTGACACCAACAACTGG : CATGACAGCACCCATAATTCCACCAAGTGCTCTTAAAGTTGGGGAGACTAATATGCAAGTTACAG : GAAATCTTATGCGGTTCATTATAACAGCAAATCTTCTGGGACTTCCTGCAGTTACTGTCCCT : GTTGGTTATGACAAGCAAGGGCTTCCCATAGGTATACAACTCATTGGCCGGCCCTGGTGTGAAGCTTCCATTTTGCGCTTGGCGGCTGCAATTGAG : GAAACTTGTGCTGAGCCCAAGAAGAAACCACTGCAATATTATGACATTCTGAAAGGGAACTAGAAATCAAGCTTAGCCTGCAGGAGCCCGGGGTAAACAGTAATGTGGATTATGAAGCTTTAAGAAGATGTGAATTCATTTATCAAGACTTTGGTGATTCATAGAAACCACCTTGAAAATTGAACGTACTGAGTTTGCGGTACCACTTTATGAAATAAAGCTGATGAAAAGGTTTTGGCTAATCAATACAACCATTTGCAATGCAAATAGAATCCAGAAACAGGTGATGCCCGCATAGTTGCAGTGAAATTGTTAAACCTTGTATAACAACATTATGTTCCTAAACCCCACAATATTTGATCTCGAAAGGGAGAAAATAAGAACACGAATTTCTAATTGACCCTGATATCAGCTGAAAGAAATCATGTTGCATAAGCCGAGACATTCTCTTGGCTACTCTGTGTACTTGAGTACTTATTCAACAGTCAATGCGAGAGTCTGGAAACATGTAGAAACTAATACTTGCCACATTCTTCATTTACATCAGAGTGAGCTCCTATTTACTCTGTGAAACTA</gDNA_template>
            <first_frame> L  E  H  V  F  I  N  Q  C  S  L  A  R  R  R  A  S  V  L  A  E  S  I  Y  L  L  L  C  V  I  S  S  V  V  L  Y  M  I  F  L  I  F  M  Y  L  Y  L  C  D  H  D  Y  G  E  L  L  I  D  *  V  T  V  S  R  K  W  G  T  S  V  *  C  Y  R  R  V  K  L  T  *  R  R  *  S  T  Y  R  R  I  F  K  :  L  H  I  *  L  V  S  G  S  S  S  F  *  T  W  L  K  Y  R  V  L  D  L  *  L  *  I  A  S  R  M  I  T  N  S  T  R :   S  *  S  T  P  S  Y  R  S  T  L  C  L  N  R  N  F  L  L  K  :  S  Q  N  L  L  L  S  A  S  K  K  T  R  S  L  K  T  G  L  S  *  P  *  S  V  F  Q  N  M  I  Q  L  A  I  G  V  V  I  Q  P  H  H  F  A  I  G  R  F  V  I  M  H  M  H  T  D  L  S  L  Q  L  H  R  W :   L  Q  S  A  S  S  Q  L  L  R  S  S  T  I  R  I  P  Q  P  H  Y  *  F  L  L  T  L  T  M  L  E  S  K  L  L  L  L  H  R  D  L  N  K  :  G  I  H  S  Q  S  W  M  G  F  S  W  Q  S  K  T  T  *  I  A  I  L  T  H  Q  R  :  E  Q  L  H  G  C  M  R  F  V  R  *  R  R  M  L  F  L  C  Q  D  Y  A  V  V  E  Q  F  W  L  E  R  R  T  C  M  S  W  D  W  V  L  L  E  I  T  Q  T  M   : G  L  H  G  T  H  T  I  Q  I  G  T  Q  V  A  L  P  P  A  L  Q  L  L  W  L  W  D  C  V  L  L  L  W  G  R  M  E  E  :  V  Q  F  G  F  L  L  P  F  V  V  L  W  D  *  S  Q  H  M  V  E  L  T  *  P   : G  H  Y  V  V  M  E  Q  W  Q  L  L  D  R  L  L  Q  Q  L  R  T  P  Y  L   : C  M  Q  Q  F  W  G  P  L  P  L  I  E  S  L  *  D  R :   P  S  L  V  Y  L  I  S  L  H  K  R  A  C  N  L  W  N  R  C  A  L  E  N  I  Q  S :   G  L  M  M  S  S  Q  L  I  Y  L  T  S  A  G  M  F  S  V  S  Y  Q  K  S  M  D  A  E :   S  *  K  L  *  Y  Q  S  C  M  R  C  A  *  L  M  L  F  L  L  D  R  K  H  Y  A  H  *  I  Q  T  V  V  M   : G  R  E  R  D  *  H  M  I  L  A  P  I  *  H  F  F  V  H  L  Q  Q  Q  T  M  L  L  L  S  G  L   : G  G  G  *  C  I  S  I  W  R  F  S  R  G  W  I  S  L  *  H  Q  Q  L   : A  *  Q  H  P  *  F  H  Q  V  L  L  K  L  G  R  L  I  C  K  L  Q  :  E  I  L  C  G  S  L  *  Q  Q  I  F  W  D  F  L  Q  L  L  S  L :   L  V  M  T  S  K  G  F  P  *  V  Y  N  S  L  A  G  P  G  V  K  L  P  F  C  A  W  R  L  Q  L  R :   K  L  V  L  S  P  R  R  N  H  C  N  I  M  T  F  *  K  G  T  R  N  Q  A  *  P  A  G  A  R  G  K  Q  *  C  G  L  *  S  F  K  K  M  *  I  H  L  S  R  L  W  *  F  I  E  T  T  L  K  I  E  R  T  E  F  A  V  P  L  Y  E  I  K  L  M  K  R  F  W  L  I  N  T  T  I  C  N  A  N  R  I  Q  K  Q  V  M  P  A  *  L  Q  *  N  C  *  T  L  Y  N  N  I  M  F  L  N  P  T  I  F  D  L  E  R  E  K  I  R  T  R  I  S  N  *  P  *  Y  Q  L  K  E  I  M  L  H  K  P  R  H  S  L  G  Y  S  V  Y  L  S  T  Y  S  T  V  N  A  R  V  W  K  H  V  E  T  N  T  C  H  I  L  H  L  H  Q  S  E  L  L  F  T  L  *  N   </first_frame>
            <second_frame>  L  S  T  F  S  L  T  S  A  R  W  P  G  D  E  L  R  F  L  L  K  A  F  T  Y  C  C  V  *  *  V  P  *  Y  C  I  *  F  S  *  F  L  C  I  F  I  C  V  I  M  I  M  V  N  Y  *  *  I  E  L  L  Y  Q  E  N  G  E  Q  A  C  D  A  T  G  E  *  N  *  L  D  G  G  E  V  H  T  G  E  Y  S  S :   S  T  F  D  W  F  L  V  Q  V  L  S  E  P  G  *  S  T  G  Y  W  I  F  D  C  E  S  P  Q  E  *  *  Q  I  R  R   : E  A  E  V  H  R  H  T  G  V  P  Y  V  *  T  G  I  S  S  S  R :   A  R  T  C  C  C  Q  H  R  R  R  R  E  A  *  R  P  G  *  A  S  L  K  V  S  S  R  I  *  S  S  *  Q  L  E  W  *  Y  N  H  I  I  S  L  L  E  D  S  *  L  C  I  C  I  Q  I  *  V  Y  N  S  I  D   : G  C  R  A  L  H  L  S  Y  *  G  V  Q  Q  *  E  S  H  N  P  T  I  N  F  F  *  P  *  R  C  *  K  A  S  C  C  F  Y  T  E  I  *  T  R :   E  S  T  L  N  L  G  W  D  F  H  G  N  Q  R  R  H  R  L  L  F  S  P  I  K  G :   S  N  Y  M  D  A  *  G  S  *  G  K  E  G  C  C  F  C  V  K  I  T  Q  L  W  S  N  F  G  W  K  G  E  H  A  *  V  G  I  G  Y  Y  W  K  *  R  K  L  W  :  D  Y  T  E  P  T  R  S  R  *  V  H  R  W  L  F  L  R  P  C  S  Y  C  G  F  G  I  V  F  C  C  F  G  D  G  W  R  R :   F  S  S  D  S  F  F  P  L  W  C  C  G  I  K  V  N  I  W  S  N  *  H  D  R  :  V  I  M  W  *  W  N  S  G  N  Y  W  T  D  C  Y  N  S  *  G  H  H  T  C  :  V  C  S  N  F  G  V  L  S  R  *  *  N  L  F  E  T   : V  P  P  L  C  T  *  F  L  F  T  R  E  L  A  I  C  G  I  A  A  P  W  K  I  Y  R   : V  V  *  *  C  L  L  N  *  Y  I  *  Q  V  R  E  C  S  Q  S  A  I  R  R  A  W  M  Q   : N  R  R  N  C  N  T  R  V  A  *  D  A  H  S  S  C  C  F  Y  W  I  G  S  I  M  R  T  E  S  R  L  L  *  W  :  E  G  R  E  I  D  I  *  Y  S  H  Q  S  D  T  F  S  F  I  Y  S  S  R  L  C  C  F  S  A  A  *  :  A  E  V  N  V  F  P  Y  G  D  F  Q  E  G  G  Y  H  C  D  T  N  N  W  :  H  D  S  T  H  N  S  T  K  C  S  *  S  W  G  D  *  Y  A  S  Y  R :   K  S  Y  A  V  H  Y  N  S  K  S  S  G  T  S  C  S  Y  C  P   : C  W  L  *  Q  A  R  A  S  H  R  Y  T  T  H  W  P  A  L  V  *  S  F  H  F  A  L  G  G  C  N  *   : G  N  L  C  *  A  Q  E  E  T  T  A  I  L  *  H  S  E  R  E  L  E  I  K  L  S  L  Q  E  P  G  V  N  S  N  V  D  Y  E  A  L  R  R  C  E  F  I  Y  Q  D  F  G  D  S  *  K  P  P  *  K  L  N  V  L  S  L  R  Y  H  F  M  K  *  S  *  *  K  G  F  G  *  S  I  Q  P  F  A  M  Q  I  E  S  R  N  R  *  C  P  H  S  C  S  E  I  V  K  P  C  I  T  T  L  C  S  *  T  P  Q  Y  L  I  S  K  G  R  K  *  E  H  E  F  L  I  D  P  D  I  S  *  K  K  S  C  C  I  S  R  D  I  L  L  A  T  L  C  T  *  V  L  I  Q  Q  S  M  R  E  S  G  N  M  *  K  L  I  L  A  T  F  F  I  Y  I  R  V  S  S  Y  L  L  C  E  T  </second_frame>
            <third_frame>   *  A  R  F  H  *  P  V  L  A  G  P  A  T  S  F  G  S  C  *  K  H  L  L  I  V  V  C  D  K  F  R  S  I  V  Y  D  F  L  D  F  Y  V  S  L  F  V  *  S  *  L  W  *  I  I  D  R  L  S  Y  C  I  K  K  M  G  N  K  R  V  M  L  P  A  S  E  I  D  L  T  A  V  K  Y  I  P  E  N  I  Q   : A  P  H  L  T  G  F  W  F  K  F  F  L  N  L  A  E  V  P  G  I  G  S  L  I  V  N  R  L  K  N  D  N  K  F  D  E  :  K  L  K  Y  T  V  I  P  E  Y  P  M  F  K  P  E  F  P  P  Q   : E  P  E  P  A  V  V  S  I  E  E  D  A  K  P  E  D  R  V  E  L  A  L  K  C  L  P  E  Y  D  P  A  S  N  W  S  G  D  T  T  T  S  F  R  Y  W  K  I  R  D  Y  A  Y  A  Y  R  S  K  F  T  T  P  S  M  :  V  A  E  R  F  I  S  A  I  E  E  F  N  N  K  N  P  T  T  P  L  L  I  S  F  D  P  D  D  V  R  K  Q  A  A  A  S  T  Q  R  F  E  Q   : G  N  P  L  S  I  L  D  G  I  F  M  A  I  K  D  D  I  D  C  Y  S  H  P  S  K   : G  A  T  T  W  M  H  E  V  R  E  V  K  K  D  A  V  S  V  S  R  L  R  S  C  G  A  I  L  V  G  K  A  N  M  H  E  L  G  L  G  T  T  G  N  N  A  N  Y  G :   T  T  R  N  P  H  D  P  D  R  Y  T  G  G  S  S  S  G  P  A  A  I  V  A  L  G  L  C  S  A  A  L  G  T  D  G  G   : G  S  V  R  I  P  S  S  L  C  G  V  V  G  L  K  S  T  Y  G  R  T  D  M  T  G :   S  L  C  G  D  G  T  V  A  I  I  G  P  I  A  T  T  V  E  D  T  I  L  V :   Y  A  A  I  L  G  S  S  P  A  D  R  I  S  L  R  P  :  S  L  P  C  V  P  N  F  S  S  Q  E  S  L  Q  S  V  E  S  L  R  L  G  K  Y  T  E  :  W  F  N  D  V  F  S  I  D  I  S  D  K  C  G  N  V  L  S  Q  L  S  E  E  H  G  C  R  :  I  V  E  I  V  I  P  E  L  H  E  M  R  I  A  H  V  V  S  I  G  S  E  A  L  C  A  L  N  P  D  C  C  D  G :   K  G  E  R  L  T  Y  D  T  R  T  N  L  T  L  F  R  S  F  T  A  A  D  Y  V  A  S  Q  R  L  R :   R  R  L  M  Y  F  H  M  E  I  F  K  R  V  D  I  I  V  T  P  T  T  G :   M  T  A  P  I  I  P  P  S  A  L  K  V  G  E  T  N  M  Q  V  T   : G  N  L  M  R  F  I  I  T  A  N  L  L  G  L  P  A  V  T  V  P  :  V  G  Y  D  K  Q  G  L  P  I  G  I  Q  L  I  G  R  P  W  C  E  A  S  I  L  R  L  A  A  A  I  E  :  E  T  C  A  E  P  K  K  K  P  L  Q  Y  Y  D  I  L  K  G  N  *  K  S  S  L  A  C  R  S  P  G  *  T  V  M  W  I  M  K  L  *  E  D  V  N  S  F  I  K  T  L  V  I  H  R  N  H  L  E  N  *  T  Y  *  V  C  G  T  T  L  *  N  K  A  D  E  K  V  L  A  N  Q  Y  N  H  L  Q  C  K  *  N  P  E  T  G  D  A  R  I  V  A  V  K  L  L  N  L  V  *  Q  H  Y  V  P  K  P  H  N  I  *  S  R  K  G  E  N  K  N  T  N  F  *  L  T  L  I  S  A  E  R  N  H  V  A  *  A  E  T  F  S  W  L  L  C  V  L  E  Y  L  F  N  S  Q  C  E  S  L  E  T  C  R  N  *  Y  L  P  H  S  S  F  T  S  E  *  A  P  I  Y  S  V  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69318" stop="69429"/>
                    <exon start="69522" stop="69631"/>
                    <exon start="69704" stop="69764"/>
                    <exon start="70694" stop="70884"/>
                    <exon start="70964" stop="71093"/>
                    <exon start="71224" stop="71301"/>
                    <exon start="71372" stop="71519"/>
                    <exon start="71792" stop="71904"/>
                    <exon start="71999" stop="72074"/>
                    <exon start="73409" stop="73480"/>
                    <exon start="73887" stop="73938"/>
                    <exon start="74237" stop="74317"/>
                    <exon start="74397" stop="74480"/>
                    <exon start="74651" stop="74754"/>
                    <exon start="74877" stop="74969"/>
                    <exon start="75333" stop="75401"/>
                    <exon start="75791" stop="75855"/>
                    <exon start="76004" stop="76065"/>
                    <exon start="76360" stop="76455"/>
                    <exon start="76578" stop="76640"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1857</number_coding_nucleotides>
                  <number_encoded_amino_acids>619</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIDRLSYCIKKMGNKRVMLPASEIDLTAVKYIPENIQAPHLTGFWFKFFLNLAEVPGIGSLIVNRLKNDNKFDEKLKYTVIPEYPMFKPEFPPQEPEPAVVSIEEDAKPEDRVELALKCLPEYDPASNWSGDTTTSFRYWKIRDYAYAYRSKFTTPSMVAERFISAIEEFNNKNPTTPLLISFDPDDVRKQAAASTQRFEQGNPLSILDGIFMAIKDDIDCYSHPSKGATTWMHEVREVKKDAVSVSRLRSCGAILVGKANMHELGLGTTGNNANYGTTRNPHDPDRYTGGSSSGPAAIVALGLCSAALGTDGGGSVRIPSSLCGVVGLKSTYGRTDMTGSLCGDGTVAIIGPIATTVEDTILVYAAILGSSPADRISLRPSLPCVPNFSSQESLQSVESLRLGKYTEWFNDVFSIDISDKCGNVLSQLSEEHGCRIVEIVIPELHEMRIAHVVSIGSEALCALNPDCCDGKGERLTYDTRTNLTLFRSFTAADYVASQRLRRRLMYFHMEIFKRVDIIVTPTTGMTAPIIPPSALKVGETNMQVTGNLMRFIITANLLGLPAVTVPVGYDKQGLPIGIQLIGRPWCEASILRLAAAIEETCAEPKKKPLQYYDILKGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="73412" e_stop="73480"/>
            <exon e_start="73887" e_stop="74317"/>
            <exon e_start="74397" e_stop="74602"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.989" e_score="0.957"/>
          <exon-intron don_prob="0.997" acc_prob="0.980" e_score="0.942"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="73412" e_stop="73480" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.989">
            <gDNA_intron_boundary i_start="73481" i_stop="73886" i_length="406"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="73887" e_stop="74317" e_length="431"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.980">
            <gDNA_intron_boundary i_start="74318" i_stop="74396" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.951">
            <gDNA_exon_boundary e_start="74397" e_stop="74602" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73412" stop="73480"/>
              <exon start="73887" stop="74317"/>
              <exon start="74397" stop="74602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73412" stop="73480"/>
              <exon start="73887" stop="74317"/>
              <exon start="74397" stop="74548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73412" stop="73480"/>
              <exon start="73887" stop="74317"/>
              <exon start="74397" stop="74517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATGTGGTGATGGAACAGTGGCAATTATTGGACCGATTGCTACAACAGTTGAGGACACCATACTTGT : GTATGCAGCAATTTTGGGGTCCTCTCCCGCTGATAGAATCTCTTTGAGACCGGTAACCATCCCAAAAGGCTTATTCATCAGCTATATTATTAAAAGTCTGTATTTCTATTGAATGTTCTGCTTTCTTTCTTTTTCTTCATTGTAATACTTTGTAAAAGTAGCTTCTGGTGAACAGAATAACCTGAAACATCATTTACATGTTTAGAACATCTAAAAACCATGTTCGTAGTTTTAATCTCACCAGCAGACTCTAGATTCATTAAGATCACATTCATCTTGTTGATTTTGGACATCATGGTGGATCAAACATTCTGTTTCTGTAATTTATCATCTCCCTCTATTTCTTTCAGTCCCTCCCTTGTGTACCTAATTTCTCTTCACAAGAGAGCTTGCAATCTGTGGAATCGCTGCGCCTTGGAAAATATACAGAG : TGGTTTAATGATGTCTTCTCAATTGATATATCTGACAAGTGCGGGAATGTTCTCAGTCAGCTATCAGAAGAGCATGGATGCAGAGTAATTCTATTACCATTACTATGTTCTTCATTGCTTTATCTTGGACTTTGGCAGGTGTATCCTCTAGCTTTGGTTTAGAATTTCAGGAAACCATTAGCTGACAATATTGTGAGAATCTACCA</gDNA_template>
            <first_frame> I  M  W  *  W  N  S  G  N  Y  W  T  D  C  Y  N  S  *  G  H  H  T  C  :  V  C  S  N  F  G  V  L  S  R  *  *  N  L  F  E  T  G  N  H  P  K  R  L  I  H  Q  L  Y  Y  *  K  S  V  F  L  L  N  V  L  L  S  F  F  F  F  I  V  I  L  C  K  S  S  F  W  *  T  E  *  P  E  T  S  F  T  C  L  E  H  L  K  T  M  F  V  V  L  I  S  P  A  D  S  R  F  I  K  I  T  F  I  L  L  I  L  D  I  M  V  D  Q  T  F  C  F  C  N  L  S  S  P  S  I  S  F  S  P  S  L  V  Y  L  I  S  L  H  K  R  A  C  N  L  W  N  R  C  A  L  E  N  I  Q  S :   G  L  M  M  S  S  Q  L  I  Y  L  T  S  A  G  M  F  S  V  S  Y  Q  K  S  M  D  A  E  *  F  Y  Y  H  Y  Y  V  L  H  C  F  I  L  D  F  G  R  C  I  L  *  L  W  F  R  I  S  G  N  H  *  L  T  I  L  *  E  S  T  </first_frame>
            <second_frame>  L  C  G  D  G  T  V  A  I  I  G  P  I  A  T  T  V  E  D  T  I  L  V :   Y  A  A  I  L  G  S  S  P  A  D  R  I  S  L  R  P  V  T  I  P  K  G  L  F  I  S  Y  I  I  K  S  L  Y  F  Y  *  M  F  C  F  L  S  F  S  S  L  *  Y  F  V  K  V  A  S  G  E  Q  N  N  L  K  H  H  L  H  V  *  N  I  *  K  P  C  S  *  F  *  S  H  Q  Q  T  L  D  S  L  R  S  H  S  S  C  *  F  W  T  S  W  W  I  K  H  S  V  S  V  I  Y  H  L  P  L  F  L  S  V  P  P  L  C  T  *  F  L  F  T  R  E  L  A  I  C  G  I  A  A  P  W  K  I  Y  R   : V  V  *  *  C  L  L  N  *  Y  I  *  Q  V  R  E  C  S  Q  S  A  I  R  R  A  W  M  Q  S  N  S  I  T  I  T  M  F  F  I  A  L  S  W  T  L  A  G  V  S  S  S  F  G  L  E  F  Q  E  T  I  S  *  Q  Y  C  E  N  L  P </second_frame>
            <third_frame>   Y  V  V  M  E  Q  W  Q  L  L  D  R  L  L  Q  Q  L  R  T  P  Y  L   : C  M  Q  Q  F  W  G  P  L  P  L  I  E  S  L  *  D  R  *  P  S  Q  K  A  Y  S  S  A  I  L  L  K  V  C  I  S  I  E  C  S  A  F  F  L  F  L  H  C  N  T  L  *  K  *  L  L  V  N  R  I  T  *  N  I  I  Y  M  F  R  T  S  K  N  H  V  R  S  F  N  L  T  S  R  L  *  I  H  *  D  H  I  H  L  V  D  F  G  H  H  G  G  S  N  I  L  F  L  *  F  I  I  S  L  Y  F  F  Q  S  L  P  C  V  P  N  F  S  S  Q  E  S  L  Q  S  V  E  S  L  R  L  G  K  Y  T  E  :  W  F  N  D  V  F  S  I  D  I  S  D  K  C  G  N  V  L  S  Q  L  S  E  E  H  G  C  R  V  I  L  L  P  L  L  C  S  S  L  L  Y  L  G  L  W  Q  V  Y  P  L  A  L  V  *  N  F  R  K  P  L  A  D  N  I  V  R  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74067" stop="74317"/>
                    <exon start="74397" stop="74484"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PETSFTCLEHLKTMFVVLISPADSRFIKITFILLILDIMVDQTFCFCNLSSPSISFSPSLVYLISLHKRACNLWNRCALENIQSGLMMSSQLIYLTSAGMFSVSYQKSMDAE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74210" stop="74317"/>
                    <exon start="74397" stop="74558"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIISLYFFQSLPCVPNFSSQESLQSVESLRLGKYTEWFNDVFSIDISDKCGNVLSQLSEEHGCRVILLPLLCSSLLYLGLWQVYPLALV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="71800" e_stop="72496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="71800" e_stop="72496" e_length="697"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71800" stop="72496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71800" stop="72408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71800" stop="72192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAACCCACACGATCCAGATAGGTACACAGGTGGCTCTTCCTCCGGCCCTGCAGCTATTGTGGCTTTGGGATTGTGTTCTGCTGCTTTGGGGACGGATGGAGGAGGTTGTACATTTATTCCATGTCAAACTGAAGAATCCACTTATTCAATCTTCATAAACAATATTTTATTGATGCTTGATTTAATGTGTAAGGACAGGTTCAGTTCGGATTCCTTCTTCCCTTTGTGGTGTTGTGGGATTAAAGTCAACATATGGTCGAACTGACATGACCGGGTGAGCTCGTCCTACACTTGTACATGTCGCTTATGATATATTTTTCTCACTAACAGATCTTCCAACTGTATAACCATTATTCTTATTCCTCTTTCGTCAACCATCAATATTTCTTGCATTTATTCTGCCTATTCGTTTAGGAGCTTGTGGTTCATATATGCAAGTGTGTACATTAGTCTAAAATGTGCTTCAATCTTTTATGTATAGTGATGATAGACCATCTCAAATTGGATTTATTATCTCTCCAGATCAATCTTTTATGTATAGTGATGATAGACCATCTCAAATTGGATTTATTATCTCTCTAGATCTTTGTATTAGTCAAAATAATGTTCTCAATTTTTTTTATTAAGGATGTCCAAGAATAATTGTGTGTCGCTGTCAAAATAATAATAAAAAAATTGTGATATTTGGGGTTTGAA</gDNA_template>
            <first_frame> G  T  H  T  I  Q  I  G  T  Q  V  A  L  P  P  A  L  Q  L  L  W  L  W  D  C  V  L  L  L  W  G  R  M  E  E  V  V  H  L  F  H  V  K  L  K  N  P  L  I  Q  S  S  *  T  I  F  Y  *  C  L  I  *  C  V  R  T  G  S  V  R  I  P  S  S  L  C  G  V  V  G  L  K  S  T  Y  G  R  T  D  M  T  G  *  A  R  P  T  L  V  H  V  A  Y  D  I  F  F  S  L  T  D  L  P  T  V  *  P  L  F  L  F  L  F  R  Q  P  S  I  F  L  A  F  I  L  P  I  R  L  G  A  C  G  S  Y  M  Q  V  C  T  L  V  *  N  V  L  Q  S  F  M  Y  S  D  D  R  P  S  Q  I  G  F  I  I  S  P  D  Q  S  F  M  Y  S  D  D  R  P  S  Q  I  G  F  I  I  S  L  D  L  C  I  S  Q  N  N  V  L  N  F  F  Y  *  G  C  P  R  I  I  V  C  R  C  Q  N  N  N  K  K  I  V  I  F  G  V  *  </first_frame>
            <second_frame>  E  P  T  R  S  R  *  V  H  R  W  L  F  L  R  P  C  S  Y  C  G  F  G  I  V  F  C  C  F  G  D  G  W  R  R  L  Y  I  Y  S  M  S  N  *  R  I  H  L  F  N  L  H  K  Q  Y  F  I  D  A  *  F  N  V  *  G  Q  V  Q  F  G  F  L  L  P  F  V  V  L  W  D  *  S  Q  H  M  V  E  L  T  *  P  G  E  L  V  L  H  L  Y  M  S  L  M  I  Y  F  S  H  *  Q  I  F  Q  L  Y  N  H  Y  S  Y  S  S  F  V  N  H  Q  Y  F  L  H  L  F  C  L  F  V  *  E  L  V  V  H  I  C  K  C  V  H  *  S  K  M  C  F  N  L  L  C  I  V  M  I  D  H  L  K  L  D  L  L  S  L  Q  I  N  L  L  C  I  V  M  I  D  H  L  K  L  D  L  L  S  L  *  I  F  V  L  V  K  I  M  F  S  I  F  F  I  K  D  V  Q  E  *  L  C  V  A  V  K  I  I  I  K  K  L  *  Y  L  G  F  E </second_frame>
            <third_frame>   N  P  H  D  P  D  R  Y  T  G  G  S  S  S  G  P  A  A  I  V  A  L  G  L  C  S  A  A  L  G  T  D  G  G  G  C  T  F  I  P  C  Q  T  E  E  S  T  Y  S  I  F  I  N  N  I  L  L  M  L  D  L  M  C  K  D  R  F  S  S  D  S  F  F  P  L  W  C  C  G  I  K  V  N  I  W  S  N  *  H  D  R  V  S  S  S  Y  T  C  T  C  R  L  *  Y  I  F  L  T  N  R  S  S  N  C  I  T  I  I  L  I  P  L  S  S  T  I  N  I  S  C  I  Y  S  A  Y  S  F  R  S  L  W  F  I  Y  A  S  V  Y  I  S  L  K  C  A  S  I  F  Y  V  *  *  *  *  T  I  S  N  W  I  Y  Y  L  S  R  S  I  F  Y  V  *  *  *  *  T  I  S  N  W  I  Y  Y  L  S  R  S  L  Y  *  S  K  *  C  S  Q  F  F  L  L  R  M  S  K  N  N  C  V  S  L  S  K  *  *  *  K  N  C  D  I  W  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71802" stop="72065"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPHDPDRYTGGSSSGPAAIVALGLCSAALGTDGGGCTFIPCQTEESTYSIFINNILLMLDLMCKDRFSSDSFFPLWCCGIKVNIWSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="78183" PGL_stop="81851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78183" e_stop="78724"/>
            <exon e_start="79596" e_stop="79733"/>
            <exon e_start="80673" e_stop="80922"/>
            <exon e_start="81430" e_stop="81851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.888" e_score="0.996"/>
          <exon-intron don_prob="0.979" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.865" e_score="0.984"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="78183" e_stop="78724" e_length="542"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.888">
            <gDNA_intron_boundary i_start="78725" i_stop="79595" i_length="871"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79596" e_stop="79733" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.996">
            <gDNA_intron_boundary i_start="79734" i_stop="80672" i_length="939"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="80673" e_stop="80922" e_length="250"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.865">
            <gDNA_intron_boundary i_start="80923" i_stop="81429" i_length="507"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81430" e_stop="81851" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78183" stop="78724"/>
              <exon start="79596" stop="79733"/>
              <exon start="80673" stop="80854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80830" stop="80922"/>
              <exon start="81430" stop="81851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAGAGGAGATCAGAAATGGCGTCGAAGCTAACTCCAAAGCTCTTCTCATGGCTGATTCTGCCGACGTTGCTTCTCATTTTCCTCTACTCCCTATCCCTTCCACTTTATGCTCCTACTCCTCCGAAACCCAAAATTCCCATCTCTCCTTCTTGTAATCTCTTTAAAGGGAAGTGGGTTAGCGACCCGAATCGCAGACCCATTTACGATGAGTCCTGCCCCTTTCACAGGAACGCCTGGAACTGTCTCAGAAACCAAAGAGAGAATATGGGTCGGATCAATTCTTGGAAATGGAAACCCGACAAGTGTGATTTAACTCGGATCGACCCAGTTGGGTTCTTGGGTTCAATGAGGAACAAGAATATTGGGTTTGTTGGAGATTCGTTGAATGAGAATTTCTTGGTTTCGTTTTTGTGTACTCTTAGAGTGGCTGATTCTAGTGCAAAGAAATGGAAGAGAAAGGGTGCTTGGAGAGGAGCCTATTTTCCAAAGTTCAATGTTACCGTGGGTTATCATCGTGCTGTTTTGCTAGCCAAATATGA : GTGGCTGCCAAAACAGCTTGACGATTCCAACCAAGATGGATTGAAGGGAAGATATCGAGTAGATGTTGATATTCCAGCAGATGATTGGGCTCATATTGGTGCCTTTTACAATGTTCTAGTCTTCAACACTGGTCATTG : GTGGGGCTTTGACAAATTCCCTAAAGAGACGCCTCTTGTTTTCTACAAGGCAGGGCAATTGATTCAACCTCCATTAGAGATGTTTGATGGGTTTAAGGTTGTTCTTGAGAATATGATTGCCTATATAGATAAAGAATTACCAGAGAAAACACTTAAGTTTTGGCGCTTGCAATCACCAAGGCACTTTCACGGTGGTGATTGGAATCAAAATGGTAGTTGCACAATGGATGAACCCCTTGATGAACTTCAG : ATATAATGGGGTTAACAAAGAAGCAAGGCGACTAAATCATTTGATCGAAGAGGTTTTAAAAGATACAACTATCAGAAGCCTCGATCTGACTCACTTGAGTGAGTTCCGTGCAGATGCCCATCCTGCCATTTGGTTGGGGAAAAAGGATGCAGTATCGGTCTGGGGTCAAGACTGTATGCATTGGTGCCTTCCTGGTGTTCCAGATACATGGGTTGATATCTTGGCCCAGCTAATCACTCCTCATATTTTAGAGACAGGGTGATCACTATAGATGGTTGCAAAGCTTGCGTGATTCATTTGCAACTGAGCTCCTGATACATCAAGACGTCAGCTTTTTTGACAACAACTACAAACTTGCTGATCTGAAGGAGGTGGTAGAACCAGTTCATTATTTTGTATTCCCTTACATTCTTCCTATCATT</gDNA_template>
            <first_frame> V  *  R  R  S  E  M  A  S  K  L  T  P  K  L  F  S  W  L  I  L  P  T  L  L  L  I  F  L  Y  S  L  S  L  P  L  Y  A  P  T  P  P  K  P  K  I  P  I  S  P  S  C  N  L  F  K  G  K  W  V  S  D  P  N  R  R  P  I  Y  D  E  S  C  P  F  H  R  N  A  W  N  C  L  R  N  Q  R  E  N  M  G  R  I  N  S  W  K  W  K  P  D  K  C  D  L  T  R  I  D  P  V  G  F  L  G  S  M  R  N  K  N  I  G  F  V  G  D  S  L  N  E  N  F  L  V  S  F  L  C  T  L  R  V  A  D  S  S  A  K  K  W  K  R  K  G  A  W  R  G  A  Y  F  P  K  F  N  V  T  V  G  Y  H  R  A  V  L  L  A  K  Y  E :   W  L  P  K  Q  L  D  D  S  N  Q  D  G  L  K  G  R  Y  R  V  D  V  D  I  P  A  D  D  W  A  H  I  G  A  F  Y  N  V  L  V  F  N  T  G  H  W :   W  G  F  D  K  F  P  K  E  T  P  L  V  F  Y  K  A  G  Q  L  I  Q  P  P  L  E  M  F  D  G  F  K  V  V  L  E  N  M  I  A  Y  I  D  K  E  L  P  E  K  T  L  K  F  W  R  L  Q  S  P  R  H  F  H  G  G  D  W  N  Q  N  G  S  C  T  M  D  E  P  L  D  E  L  Q  :  I  *  W  G  *  Q  R  S  K  A  T  K  S  F  D  R  R  G  F  K  R  Y  N  Y  Q  K  P  R  S  D  S  L  E  *  V  P  C  R  C  P  S  C  H  L  V  G  E  K  G  C  S  I  G  L  G  S  R  L  Y  A  L  V  P  S  W  C  S  R  Y  M  G  *  Y  L  G  P  A  N  H  S  S  Y  F  R  D  R  V  I  T  I  D  G  C  K  A  C  V  I  H  L  Q  L  S  S  *  Y  I  K  T  S  A  F  L  T  T  T  T  N  L  L  I  *  R  R  W  *  N  Q  F  I  I  L  Y  S  L  T  F  F  L  S   </first_frame>
            <second_frame>  F  R  G  D  Q  K  W  R  R  S  *  L  Q  S  S  S  H  G  *  F  C  R  R  C  F  S  F  S  S  T  P  Y  P  F  H  F  M  L  L  L  L  R  N  P  K  F  P  S  L  L  L  V  I  S  L  K  G  S  G  L  A  T  R  I  A  D  P  F  T  M  S  P  A  P  F  T  G  T  P  G  T  V  S  E  T  K  E  R  I  W  V  G  S  I  L  G  N  G  N  P  T  S  V  I  *  L  G  S  T  Q  L  G  S  W  V  Q  *  G  T  R  I  L  G  L  L  E  I  R  *  M  R  I  S  W  F  R  F  C  V  L  L  E  W  L  I  L  V  Q  R  N  G  R  E  R  V  L  G  E  E  P  I  F  Q  S  S  M  L  P  W  V  I  I  V  L  F  C  *  P  N  M   : S  G  C  Q  N  S  L  T  I  P  T  K  M  D  *  R  E  D  I  E  *  M  L  I  F  Q  Q  M  I  G  L  I  L  V  P  F  T  M  F  *  S  S  T  L  V  I   : G  G  A  L  T  N  S  L  K  R  R  L  L  F  S  T  R  Q  G  N  *  F  N  L  H  *  R  C  L  M  G  L  R  L  F  L  R  I  *  L  P  I  *  I  K  N  Y  Q  R  K  H  L  S  F  G  A  C  N  H  Q  G  T  F  T  V  V  I  G  I  K  M  V  V  A  Q  W  M  N  P  L  M  N  F  R :   Y  N  G  V  N  K  E  A  R  R  L  N  H  L  I  E  E  V  L  K  D  T  T  I  R  S  L  D  L  T  H  L  S  E  F  R  A  D  A  H  P  A  I  W  L  G  K  K  D  A  V  S  V  W  G  Q  D  C  M  H  W  C  L  P  G  V  P  D  T  W  V  D  I  L  A  Q  L  I  T  P  H  I  L  E  T  G  *  S  L  *  M  V  A  K  L  A  *  F  I  C  N  *  A  P  D  T  S  R  R  Q  L  F  *  Q  Q  L  Q  T  C  *  S  E  G  G  G  R  T  S  S  L  F  C  I  P  L  H  S  S  Y  H  </second_frame>
            <third_frame>   L  E  E  I  R  N  G  V  E  A  N  S  K  A  L  L  M  A  D  S  A  D  V  A  S  H  F  P  L  L  P  I  P  S  T  L  C  S  Y  S  S  E  T  Q  N  S  H  L  S  F  L  *  S  L  *  R  E  V  G  *  R  P  E  S  Q  T  H  L  R  *  V  L  P  L  S  Q  E  R  L  E  L  S  Q  K  P  K  R  E  Y  G  S  D  Q  F  L  E  M  E  T  R  Q  V  *  F  N  S  D  R  P  S  W  V  L  G  F  N  E  E  Q  E  Y  W  V  C  W  R  F  V  E  *  E  F  L  G  F  V  F  V  Y  S  *  S  G  *  F  *  C  K  E  M  E  E  K  G  C  L  E  R  S  L  F  S  K  V  Q  C  Y  R  G  L  S  S  C  C  F  A  S  Q  I  *  :  V  A  A  K  T  A  *  R  F  Q  P  R  W  I  E  G  K  I  S  S  R  C  *  Y  S  S  R  *  L  G  S  Y  W  C  L  L  Q  C  S  S  L  Q  H  W  S  L  :  V  G  L  *  Q  I  P  *  R  D  A  S  C  F  L  Q  G  R  A  I  D  S  T  S  I  R  D  V  *  W  V  *  G  C  S  *  E  Y  D  C  L  Y  R  *  R  I  T  R  E  N  T  *  V  L  A  L  A  I  T  K  A  L  S  R  W  *  L  E  S  K  W  *  L  H  N  G  *  T  P  *  *  T  S   : D  I  M  G  L  T  K  K  Q  G  D  *  I  I  *  S  K  R  F  *  K  I  Q  L  S  E  A  S  I  *  L  T  *  V  S  S  V  Q  M  P  I  L  P  F  G  W  G  K  R  M  Q  Y  R  S  G  V  K  T  V  C  I  G  A  F  L  V  F  Q  I  H  G  L  I  S  W  P  S  *  S  L  L  I  F  *  R  Q  G  D  H  Y  R  W  L  Q  S  L  R  D  S  F  A  T  E  L  L  I  H  Q  D  V  S  F  F  D  N  N  Y  K  L  A  D  L  K  E  V  V  E  P  V  H  Y  F  V  F  P  Y  I  L  P  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78189" stop="78724"/>
                    <exon start="79596" stop="79733"/>
                    <exon start="80673" stop="80922"/>
                    <exon start="81430" stop="81435"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRSEMASKLTPKLFSWLILPTLLLIFLYSLSLPLYAPTPPKPKIPISPSCNLFKGKWVSDPNRRPIYDESCPFHRNAWNCLRNQRENMGRINSWKWKPDKCDLTRIDPVGFLGSMRNKNIGFVGDSLNENFLVSFLCTLRVADSSAKKWKRKGAWRGAYFPKFNVTVGYHRAVLLAKYEWLPKQLDDSNQDGLKGRYRVDVDIPADDWAHIGAFYNVLVFNTGHWWGFDKFPKETPLVFYKAGQLIQPPLEMFDGFKVVLENMIAYIDKELPEKTLKFWRLQSPRHFHGGDWNQNGSCTMDEPLDELQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="82712" PGL_stop="83434"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82712" e_stop="83284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="82712" e_stop="83284" e_length="573"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82712" stop="83276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82712" stop="83272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82712" stop="83246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82712" stop="83245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82712" stop="83245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82713" stop="83258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82713" stop="83239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82716" stop="83284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTCAAAAAATTGATGGGATTTTCAGGGGATGATAATGAATAAATTGGATTTTCAGTTTCCCTTATTGA</gDNA_template>
            <first_frame> Q  R  Q  S  S  F  H  G  F  D  N  S  S  S  L  S  K  S  F  P  F  T  I  H  K  L  P  N  Q  F  G  P  F  D  V  Y  L  Q  E  S  S  Q  V  S  Q  S  L  V  H  Q  Q  R  R  R  H  E  R  Y  *  P  G  I  R  F  C  N  R  G  W  K  D  E  H  P  D  D  T  E  R  G  S  V  E  E  K  Q  R  A  F  V  R  *  V  L  P  L  H  G  I  E  I  G  G  N  E  E  E  M  E  E  V  Q  *  G  G  T  M  G  F  G  *  K  F  C  F  R  M  G  C  P  F  S  S  I  I  C  E  V  C  *  R  I  S  R  *  V  L  S  *  K  H  F  *  V  Q  F  F  Y  F  F  F  F  F  F  F  F  P  W  S  Q  K  I  D  G  I  F  R  G  *  *  *  I  N  W  I  F  S  F  P  Y  * </first_frame>
            <second_frame>  N  A  N  P  P  S  M  A  L  T  I  H  L  L  Y  P  N  R  F  P  S  Q  F  T  N  S  Q  T  N  L  V  P  S  M  Y  T  F  K  N  H  P  K  F  H  K  V  S  C  T  N  N  D  D  D  M  N  D  I  D  L  A  S  D  F  A  T  E  V  G  K  M  N  T  Q  M  I  Q  K  E  E  A  L  K  K  S  K  E  L  L  F  V  E  F  C  H  Y  T  G  L  K  S  E  E  M  K  K  K  W  K  K  F  S  E  E  E  Q  W  D  L  V  K  S  F  V  L  E  W  G  A  H  F  H  P  L  S  A  R  S  V  K  E  L  V  D  E  Y  L  V  E  N  I  S  E  F  N  S  S  T  S  S  S  S  S  S  F  F  P  G  L  K  K  L  M  G  F  S  G  D  D  N  E  *  I  G  F  S  V  S  L  I   </second_frame>
            <third_frame>   T  P  I  L  L  P  W  L  *  Q  F  I  F  F  I  Q  I  V  S  L  H  N  S  Q  T  P  K  P  I  W  S  L  R  C  I  P  S  R  I  I  P  S  F  T  K  S  R  A  P  T  T  T  T  T  *  T  I  L  T  W  H  Q  I  L  Q  Q  R  L  E  R  *  T  P  R  *  Y  R  K  R  K  R  *  R  K  A  K  S  F  C  S  L  S  F  A  T  T  R  D  *  N  R  R  K  *  R  R  N  G  R  S  S  V  R  R  N  N  G  I  W  L  K  V  L  F  *  N  G  V  P  I  F  I  H  Y  L  R  G  L  L  K  N  *  S  M  S  T  *  L  K  T  F  L  S  S  I  L  L  L  L  L  L  L  L  L  F  S  L  V  S  K  N  *  W  D  F  Q  G  M  I  M  N  K  L  D  F  Q  F  P  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82713" stop="83258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NANPPSMALTIHLLYPNRFPSQFTNSQTNLVPSMYTFKNHPKFHKVSCTNNDDDMNDIDLASDFATEVGKMNTQMIQKEEALKKSKELLFVEFCHYTGLKSEEMKKKWKKFSEEEQWDLVKSFVLEWGAHFHPLSARSVKELVDEYLVENISEFNSSTSSSSSSFFPGLKKLMGFSGDDNE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="82712" e_stop="83273"/>
            <exon e_start="83420" e_stop="83434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.345" e_score="0.996"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="82712" e_stop="83273" e_length="562"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.345">
            <gDNA_intron_boundary i_start="83274" i_stop="83419" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="0.733">
            <gDNA_exon_boundary e_start="83420" e_stop="83434" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82712" stop="83273"/>
              <exon start="83420" stop="83434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82712" stop="83272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82712" stop="83246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82712" stop="83245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82712" stop="83245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82713" stop="83258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82713" stop="83239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228405" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACGCCAATCCTCCTTCCATGGCTTTGACAATTCATCTTCTTTATCCAAATCGTTTCCCTTCACAATTCACAAACTCCCAAACCAATTTGGTCCCTTCGATGTATACCTTCAAGAATCATCCCAAGTTTCACAAAGTCTCGTGCACCAACAACGACGACGACATGAACGATATTGACCTGGCATCAGATTTTGCAACAGAGGTTGGAAAGATGAACACCCAGATGATACAGAAAGAGGAAGCGTTGAAGAAAAGCAAAGAGCTTTTGTTCGTTGAGTTTTGCCACTACACGGGATTGAAATCGGAGGAAATGAAGAAGAAATGGAAGAAGTTCAGTGAGGAGGAACAATGGGATTTGGTTAAAAGTTTTGTTTTAGAATGGGGTGCCCATTTTCATCCATTATCTGCGAGGTCTGTTAAAGAATTAGTCGATGAGTACTTAGTTGAAAACATTTCTGAGTTCAATTCTTCTACTTCTTCTTCTTCTTCTTCTTTTTTCCCTGGTCTCAAAAAATTGATGGGATTTTCAGGGGATGATAATGAATAAATTGGATTTTCAGTT : AAATAAAAAGGAAAT</gDNA_template>
            <first_frame> Q  R  Q  S  S  F  H  G  F  D  N  S  S  S  L  S  K  S  F  P  F  T  I  H  K  L  P  N  Q  F  G  P  F  D  V  Y  L  Q  E  S  S  Q  V  S  Q  S  L  V  H  Q  Q  R  R  R  H  E  R  Y  *  P  G  I  R  F  C  N  R  G  W  K  D  E  H  P  D  D  T  E  R  G  S  V  E  E  K  Q  R  A  F  V  R  *  V  L  P  L  H  G  I  E  I  G  G  N  E  E  E  M  E  E  V  Q  *  G  G  T  M  G  F  G  *  K  F  C  F  R  M  G  C  P  F  S  S  I  I  C  E  V  C  *  R  I  S  R  *  V  L  S  *  K  H  F  *  V  Q  F  F  Y  F  F  F  F  F  F  F  F  P  W  S  Q  K  I  D  G  I  F  R  G  *  *  *  I  N  W  I  F  S   : *  I  K  R  K  </first_frame>
            <second_frame>  N  A  N  P  P  S  M  A  L  T  I  H  L  L  Y  P  N  R  F  P  S  Q  F  T  N  S  Q  T  N  L  V  P  S  M  Y  T  F  K  N  H  P  K  F  H  K  V  S  C  T  N  N  D  D  D  M  N  D  I  D  L  A  S  D  F  A  T  E  V  G  K  M  N  T  Q  M  I  Q  K  E  E  A  L  K  K  S  K  E  L  L  F  V  E  F  C  H  Y  T  G  L  K  S  E  E  M  K  K  K  W  K  K  F  S  E  E  E  Q  W  D  L  V  K  S  F  V  L  E  W  G  A  H  F  H  P  L  S  A  R  S  V  K  E  L  V  D  E  Y  L  V  E  N  I  S  E  F  N  S  S  T  S  S  S  S  S  S  F  F  P  G  L  K  K  L  M  G  F  S  G  D  D  N  E  *  I  G  F  S  V  :  K  *  K  G  N </second_frame>
            <third_frame>   T  P  I  L  L  P  W  L  *  Q  F  I  F  F  I  Q  I  V  S  L  H  N  S  Q  T  P  K  P  I  W  S  L  R  C  I  P  S  R  I  I  P  S  F  T  K  S  R  A  P  T  T  T  T  T  *  T  I  L  T  W  H  Q  I  L  Q  Q  R  L  E  R  *  T  P  R  *  Y  R  K  R  K  R  *  R  K  A  K  S  F  C  S  L  S  F  A  T  T  R  D  *  N  R  R  K  *  R  R  N  G  R  S  S  V  R  R  N  N  G  I  W  L  K  V  L  F  *  N  G  V  P  I  F  I  H  Y  L  R  G  L  L  K  N  *  S  M  S  T  *  L  K  T  F  L  S  S  I  L  L  L  L  L  L  L  L  L  F  S  L  V  S  K  N  *  W  D  F  Q  G  M  I  M  N  K  L  D  F  Q  L :   N  K  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82713" stop="83258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NANPPSMALTIHLLYPNRFPSQFTNSQTNLVPSMYTFKNHPKFHKVSCTNNDDDMNDIDLASDFATEVGKMNTQMIQKEEALKKSKELLFVEFCHYTGLKSEEMKKKWKKFSEEEQWDLVKSFVLEWGAHFHPLSARSVKELVDEYLVENISEFNSSTSSSSSSFFPGLKKLMGFSGDDNE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="87868" PGL_stop="88901"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87868" e_stop="88102"/>
            <exon e_start="88229" e_stop="88385"/>
            <exon e_start="88569" e_stop="88901"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.998" acc_prob="0.580" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="87868" e_stop="88102" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88103" i_stop="88228" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88229" e_stop="88385" e_length="157"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.580">
            <gDNA_intron_boundary i_start="88386" i_stop="88568" i_length="183"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88569" e_stop="88901" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87868" stop="88102"/>
              <exon start="88229" stop="88385"/>
              <exon start="88569" stop="88901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87869" stop="88102"/>
              <exon start="88229" stop="88385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGAGAGTAAGAAGAAAAAAAAATCATTTCCATGGACTCTCAGATTCTAAAATTTTGGCCAATTATTCCTTCAAAAAATTTAATTTTCAACTCCAAAAAAGCAGTTCCCATTCGTGGCCTATCCAATACCCGATTCCGGGTTGCGGCAGCGGGGTCCGTTCAGAAGTCAGAGGAGGAATGGCGTGCCATTCTCTCCCCTGACCAATTCCGGATTTTGAGACAGAAAGGCACAGA : GACTCAAGGGAGTGGAGAGTATAACAAGTTTTTTGGTGTAGGCACCTACCTCTGTGCTGGTTGTGGCACTCCACTCTACAGATCCGCAACCAAATTCAACTCACCCTGTGGCTGGCCTTCTTTTTATGAGGGTCTCCCTGGGGCCATAAATCGCAAT : ACCCAGATGGCATAAGGATGGAGATAACTTGTGCTGCTTGTGGAGGCCATCTTGGTCATGTTTTTAAAGGTGAATGGTTTCGTACCCCAACAAATGAACGCCATTGTGTCAACAGTATATCCCTCAAGTTCAAACCACCGCAATTTTCTTAATGCCCTCTTCCTGACTATATATATACGTCCTGATTATGTACAACTTTGATCTAATAGTCCATTCTGTCATGTAGCTTAGCAACTTCCTGTTAGTCTCTGTATATTTTGTTTGTAATTATGATCTGTATATGCTTGATGATTTTATTGAAGATAAGTAAAGAAATGAGCTATTTTCATTCAA</gDNA_template>
            <first_frame> V  E  S  K  K  K  K  K  S  F  P  W  T  L  R  F  *  N  F  G  Q  L  F  L  Q  K  I  *  F  S  T  P  K  K  Q  F  P  F  V  A  Y  P  I  P  D  S  G  L  R  Q  R  G  P  F  R  S  Q  R  R  N  G  V  P  F  S  P  L  T  N  S  G  F  *  D  R  K  A  Q   : R  L  K  G  V  E  S  I  T  S  F  L  V  *  A  P  T  S  V  L  V  V  A  L  H  S  T  D  P  Q  P  N  S  T  H  P  V  A  G  L  L  F  M  R  V  S  L  G  P  *  I  A  I :   P  R  W  H  K  D  G  D  N  L  C  C  L  W  R  P  S  W  S  C  F  *  R  *  M  V  S  Y  P  N  K  *  T  P  L  C  Q  Q  Y  I  P  Q  V  Q  T  T  A  I  F  L  M  P  S  S  *  L  Y  I  Y  V  L  I  M  Y  N  F  D  L  I  V  H  S  V  M  *  L  S  N  F  L  L  V  S  V  Y  F  V  C  N  Y  D  L  Y  M  L  D  D  F  I  E  D  K  *  R  N  E  L  F  S  F   </first_frame>
            <second_frame>  L  R  V  R  R  K  K  N  H  F  H  G  L  S  D  S  K  I  L  A  N  Y  S  F  K  K  F  N  F  Q  L  Q  K  S  S  S  H  S  W  P  I  Q  Y  P  I  P  G  C  G  S  G  V  R  S  E  V  R  G  G  M  A  C  H  S  L  P  *  P  I  P  D  F  E  T  E  R  H  R  :  D  S  R  E  W  R  V  *  Q  V  F  W  C  R  H  L  P  L  C  W  L  W  H  S  T  L  Q  I  R  N  Q  I  Q  L  T  L  W  L  A  F  F  L  *  G  S  P  W  G  H  K  S  Q   : Y  P  D  G  I  R  M  E  I  T  C  A  A  C  G  G  H  L  G  H  V  F  K  G  E  W  F  R  T  P  T  N  E  R  H  C  V  N  S  I  S  L  K  F  K  P  P  Q  F  S  *  C  P  L  P  D  Y  I  Y  T  S  *  L  C  T  T  L  I  *  *  S  I  L  S  C  S  L  A  T  S  C  *  S  L  Y  I  L  F  V  I  M  I  C  I  C  L  M  I  L  L  K  I  S  K  E  M  S  Y  F  H  S  </second_frame>
            <third_frame>   *  E  *  E  E  K  K  I  I  S  M  D  S  Q  I  L  K  F  W  P  I  I  P  S  K  N  L  I  F  N  S  K  K  A  V  P  I  R  G  L  S  N  T  R  F  R  V  A  A  A  G  S  V  Q  K  S  E  E  E  W  R  A  I  L  S  P  D  Q  F  R  I  L  R  Q  K  G  T  E :   T  Q  G  S  G  E  Y  N  K  F  F  G  V  G  T  Y  L  C  A  G  C  G  T  P  L  Y  R  S  A  T  K  F  N  S  P  C  G  W  P  S  F  Y  E  G  L  P  G  A  I  N  R  N  :  T  Q  M  A  *  G  W  R  *  L  V  L  L  V  E  A  I  L  V  M  F  L  K  V  N  G  F  V  P  Q  Q  M  N  A  I  V  S  T  V  Y  P  S  S  S  N  H  R  N  F  L  N  A  L  F  L  T  I  Y  I  R  P  D  Y  V  Q  L  *  S  N  S  P  F  C  H  V  A  *  Q  L  P  V  S  L  C  I  F  C  L  *  L  *  S  V  Y  A  *  *  F  Y  *  R  *  V  K  K  *  A  I  F  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87879" stop="88102"/>
                    <exon start="88229" stop="88385"/>
                    <exon start="88569" stop="88583"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEKKIISMDSQILKFWPIIPSKNLIFNSKKAVPIRGLSNTRFRVAAAGSVQKSEEEWRAILSPDQFRILRQKGTETQGSGEYNKFFGVGTYLCAGCGTPLYRSATKFNSPCGWPSFYEGLPGAINRNTQMA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="95535" PGL_stop="105794"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95535" e_stop="95780"/>
            <exon e_start="96402" e_stop="96533"/>
            <exon e_start="96827" e_stop="96928"/>
            <exon e_start="98316" e_stop="98420"/>
            <exon e_start="98542" e_stop="98617"/>
            <exon e_start="100962" e_stop="101036"/>
            <exon e_start="101133" e_stop="101235"/>
            <exon e_start="101306" e_stop="101368"/>
            <exon e_start="102100" e_stop="102154"/>
            <exon e_start="102306" e_stop="102403"/>
            <exon e_start="102588" e_stop="102664"/>
            <exon e_start="103085" e_stop="103198"/>
            <exon e_start="103524" e_stop="103643"/>
            <exon e_start="104019" e_stop="104147"/>
            <exon e_start="105234" e_stop="105312"/>
            <exon e_start="105441" e_stop="105794"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.871" e_score="0.992"/>
          <exon-intron don_prob="0.721" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.584" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.392" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.796" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.833" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="95535" e_stop="95780" e_length="246"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.871">
            <gDNA_intron_boundary i_start="95781" i_stop="96401" i_length="621"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="96402" e_stop="96533" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.721" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96534" i_stop="96826" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96827" e_stop="96928" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="96929" i_stop="98315" i_length="1387"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98316" e_stop="98420" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.584">
            <gDNA_intron_boundary i_start="98421" i_stop="98541" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98542" e_stop="98617" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="98618" i_stop="100961" i_length="2344"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="100962" e_stop="101036" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.392" acc_prob="0.989">
            <gDNA_intron_boundary i_start="101037" i_stop="101132" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="101133" e_stop="101235" e_length="103"/>
          </exon>
          <intron i_serial="7" don_prob="0.796" acc_prob="0.985">
            <gDNA_intron_boundary i_start="101236" i_stop="101305" i_length="70"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="101306" e_stop="101368" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.982">
            <gDNA_intron_boundary i_start="101369" i_stop="102099" i_length="731"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="102100" e_stop="102154" e_length="55"/>
          </exon>
          <intron i_serial="9" don_prob="0.905" acc_prob="0.944">
            <gDNA_intron_boundary i_start="102155" i_stop="102305" i_length="151"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="102306" e_stop="102403" e_length="98"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.967">
            <gDNA_intron_boundary i_start="102404" i_stop="102587" i_length="184"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="102588" e_stop="102664" e_length="77"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.829">
            <gDNA_intron_boundary i_start="102665" i_stop="103084" i_length="420"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="103085" e_stop="103198" e_length="114"/>
          </exon>
          <intron i_serial="12" don_prob="0.953" acc_prob="0.952">
            <gDNA_intron_boundary i_start="103199" i_stop="103523" i_length="325"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="103524" e_stop="103643" e_length="120"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.872">
            <gDNA_intron_boundary i_start="103644" i_stop="104018" i_length="375"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="104019" e_stop="104147" e_length="129"/>
          </exon>
          <intron i_serial="14" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="104148" i_stop="105233" i_length="1086"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="105234" e_stop="105312" e_length="79"/>
          </exon>
          <intron i_serial="15" don_prob="0.833" acc_prob="0.997">
            <gDNA_intron_boundary i_start="105313" i_stop="105440" i_length="128"/>
          </intron>
          <exon e_serial="16" e_score="0.997">
            <gDNA_exon_boundary e_start="105441" e_stop="105794" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95535" stop="95780"/>
              <exon start="96402" stop="96533"/>
              <exon start="96827" stop="96928"/>
              <exon start="98316" stop="98420"/>
              <exon start="98542" stop="98617"/>
              <exon start="100962" stop="101036"/>
              <exon start="101133" stop="101194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95536" stop="95780"/>
              <exon start="96402" stop="96533"/>
              <exon start="96827" stop="96914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95624" stop="95780"/>
              <exon start="96402" stop="96533"/>
              <exon start="96827" stop="96928"/>
              <exon start="98316" stop="98420"/>
              <exon start="98542" stop="98617"/>
              <exon start="100962" stop="101036"/>
              <exon start="101133" stop="101235"/>
              <exon start="101306" stop="101368"/>
              <exon start="102100" stop="102154"/>
              <exon start="102306" stop="102403"/>
              <exon start="102588" stop="102664"/>
              <exon start="103085" stop="103198"/>
              <exon start="103524" stop="103643"/>
              <exon start="104019" stop="104147"/>
              <exon start="105234" stop="105312"/>
              <exon start="105441" stop="105769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102609" stop="102664"/>
              <exon start="103085" stop="103198"/>
              <exon start="103524" stop="103643"/>
              <exon start="104019" stop="104147"/>
              <exon start="105234" stop="105312"/>
              <exon start="105441" stop="105794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103085" stop="103198"/>
              <exon start="103524" stop="103643"/>
              <exon start="104019" stop="104147"/>
              <exon start="105234" stop="105312"/>
              <exon start="105441" stop="105767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555021" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103099" stop="103198"/>
              <exon start="103524" stop="103643"/>
              <exon start="104019" stop="104147"/>
              <exon start="105234" stop="105312"/>
              <exon start="105441" stop="105767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555147" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105444" stop="105794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATCAAAGGCTTTTGGGGAAGGAAGGAAACAGTTTCCTTCCAGTCAAAGAATTAATATATATTGTTTATTTATTTTTTTCTTTAAATGGGGAAACAAGAACCAGACCCAAAGTCTTTGGATGATTCAAATTCAACACATAAACCTGACACATCAACTCTTGATGTGCTTGCAGCTACAGATATGGCAAAACCTTCAATTTCATCGTCATTACTTCCTCAACCTTCTTGGTTTACTGCCAAAAG : GTTGCTTGCGGTATTCTGTGTGATCAACTTAATAAATTATGTGGATCGTGGATCTATTGCGAGCAATGGTGTTAATGGAAACCGTCGAACTTGTACGAAAGATGGTACATGTTCTTCTGGCAGCGGAATTCA : GGGTGAATTTAATTTGAGTAATTTTCAGGATGGGGTCATATCATCTGCTTTCATGGTTGGGCTTCTGGTGGCATCTCCAATATTTGCCTCCTTCGCCAAGAG : GGTCAATCCGTTTAGACTTATTGGAGTTGGACTGACAGTGTGGACAATAGCTATTGTTGGTTGTGGTTTCTCAACTAATTTCTGGTTCATTGCAACATGCAGAAT : GCTGGTGGGTGTTGGTGAAGCATCTTTCATAAGCCTTGCCGCTCCTTTTATTGATGATAACGCGCCTGTTGCTCAG : AAAACAGCATGGCTGGGAATATTTTACATGTGTATACCAACTGGTATAGCATTTGGCTATGTATATGGTGGACTG : GTTGGCAATCATCTTAGCTGGCGTTGGGCATTTTGGATTGAGGCATTACTAATGCTTCCCTTTGCAGTTTTAGGTTTATTTATGAAACCATTGCAATTAAAAG : GATTCTCTCATATCGGATCAAAAAAACCATTAACTTCTCCTCTGACTGCTTGCCCAGAAGAAG : CTGTTTTGAATTGTAGCAATGGTTTGTCATCAACACGGGAAGATCCCAAGGATGG : TTCGAAAGGTGCTCCTAGCAATTTGAATGAGTTGGCAAGATTTTGGAAGGATCTGAAAACGCTTCATCTTGAAAAGACTTATGTCATCAATGTCCTAG : GATACATAGCATATAATTTTGTAATTGGTGCATATTCCTATTGGGGACCCAAGGCTGGTTATTACATATACCATATG : AAAAATGCAGACATGATGTTTGGAGGTATTACTGTTATATCTGGAATATTCGGAACCTTGGCTGGAGGCTTTGTTTTGGATCGAATGACATCCACAATATCCAATGCCTTTAAG : CTTCTCTCAGTGGCAACATTTCTTGGAGCAATATTTTGCTTTGCTGCCTTTTGTTTTAAGAGTTTATATGCTTTCATCCCTCTTTTTGCAATAGGAGAACTGCTTGTATTTGCAACACAG : GGCCCTGTAAACTATGTCTGTCTCCATTCCGTCAATCCAGGTTTGAGACCACTGGCTATGGCGATGTCTACTGTTTCAATCCACATATTTGGTGATGTTCCTTCGTCTCCTCTTGTGGGGGTTGTCCAG : GATCACATTAACAATTGGAGGGTCACTGCTTTGATGTTGACATCAGTTCTACTTATAGCGGCTGGAATATGGTTTATAG : GCATCTTTCTTCACAGTGTAGATAGATCCAACGAAGATAGTGAGAATCAAATAAGTGATGCTGAGAGAGCAAGGTCACAACCATTGCTCAAGGAGAAAAGTAATGAACCAATTGACGTCCCTGTTGAATCCTCCTAGTATTTGGTTGTGATGCTACTGGACAAATGAAATGTAAATTCTTTGGTTCTTTTTCTCCGGATAATGGTTGTTTTTGGGTCCGGTTTTGCACGTACCTCGACTATTTCACCTTTGTACCTGCCACCTCCCATTGGCACATGTACCATATAACTCTGTCCTCCTCCGAGGCTTAATGTAAATTCTTTGATTCTTATCTCTGTGTAAATAATGTTGCAAA</gDNA_template>
            <first_frame> K  N  Q  R  L  L  G  K  E  G  N  S  F  L  P  V  K  E  L  I  Y  I  V  Y  L  F  F  S  L  N  G  E  T  R  T  R  P  K  V  F  G  *  F  K  F  N  T  *  T  *  H  I  N  S  *  C  A  C  S  Y  R  Y  G  K  T  F  N  F  I  V  I  T  S  S  T  F  L  V  Y  C  Q  K  :  V  A  C  G  I  L  C  D  Q  L  N  K  L  C  G  S  W  I  Y  C  E  Q  W  C  *  W  K  P  S  N  L  Y  E  R  W  Y  M  F  F  W  Q  R  N  S  :  G  *  I  *  F  E  *  F  S  G  W  G  H  I  I  C  F  H  G  W  A  S  G  G  I  S  N  I  C  L  L  R  Q  E  :  G  Q  S  V  *  T  Y  W  S  W  T  D  S  V  D  N  S  Y  C  W  L  W  F  L  N  *  F  L  V  H  C  N  M  Q  N  :  A  G  G  C  W  *  S  I  F  H  K  P  C  R  S  F  Y  *  *  *  R  A  C  C  S   : E  N  S  M  A  G  N  I  L  H  V  Y  T  N  W  Y  S  I  W  L  C  I  W  W  T   : G  W  Q  S  S  *  L  A  L  G  I  L  D  *  G  I  T  N  A  S  L  C  S  F  R  F  I  Y  E  T  I  A  I  K  R :   I  L  S  Y  R  I  K  K  T  I  N  F  S  S  D  C  L  P  R  R  S :   C  F  E  L  *  Q  W  F  V  I  N  T  G  R  S  Q  G  W  :  F  E  R  C  S  *  Q  F  E  *  V  G  K  I  L  E  G  S  E  N  A  S  S  *  K  D  L  C  H  Q  C  P  R :   I  H  S  I  *  F  C  N  W  C  I  F  L  L  G  T  Q  G  W  L  L  H  I  P  Y   : E  K  C  R  H  D  V  W  R  Y  Y  C  Y  I  W  N  I  R  N  L  G  W  R  L  C  F  G  S  N  D  I  H  N  I  Q  C  L  *   : A  S  L  S  G  N  I  S  W  S  N  I  L  L  C  C  L  L  F  *  E  F  I  C  F  H  P  S  F  C  N  R  R  T  A  C  I  C  N  T   : G  P  C  K  L  C  L  S  P  F  R  Q  S  R  F  E  T  T  G  Y  G  D  V  Y  C  F  N  P  H  I  W  *  C  S  F  V  S  S  C  G  G  C  P   : G  S  H  *  Q  L  E  G  H  C  F  D  V  D  I  S  S  T  Y  S  G  W  N  M  V  Y  R :   H  L  S  S  Q  C  R  *  I  Q  R  R  *  *  E  S  N  K  *  C  *  E  S  K  V  T  T  I  A  Q  G  E  K  *  *  T  N  *  R  P  C  *  I  L  L  V  F  G  C  D  A  T  G  Q  M  K  C  K  F  F  G  S  F  S  P  D  N  G  C  F  W  V  R  F  C  T  Y  L  D  Y  F  T  F  V  P  A  T  S  H  W  H  M  Y  H  I  T  L  S  S  S  E  A  *  C  K  F  F  D  S  Y  L  C  V  N  N  V  A   </first_frame>
            <second_frame>  K  I  K  G  F  W  G  R  K  E  T  V  S  F  Q  S  K  N  *  Y  I  L  F  I  Y  F  F  L  *  M  G  K  Q  E  P  D  P  K  S  L  D  D  S  N  S  T  H  K  P  D  T  S  T  L  D  V  L  A  A  T  D  M  A  K  P  S  I  S  S  S  L  L  P  Q  P  S  W  F  T  A  K  R :   L  L  A  V  F  C  V  I  N  L  I  N  Y  V  D  R  G  S  I  A  S  N  G  V  N  G  N  R  R  T  C  T  K  D  G  T  C  S  S  G  S  G  I  Q :   G  E  F  N  L  S  N  F  Q  D  G  V  I  S  S  A  F  M  V  G  L  L  V  A  S  P  I  F  A  S  F  A  K  R :   V  N  P  F  R  L  I  G  V  G  L  T  V  W  T  I  A  I  V  G  C  G  F  S  T  N  F  W  F  I  A  T  C  R  M :   L  V  G  V  G  E  A  S  F  I  S  L  A  A  P  F  I  D  D  N  A  P  V  A  Q  :  K  T  A  W  L  G  I  F  Y  M  C  I  P  T  G  I  A  F  G  Y  V  Y  G  G  L  :  V  G  N  H  L  S  W  R  W  A  F  W  I  E  A  L  L  M  L  P  F  A  V  L  G  L  F  M  K  P  L  Q  L  K   : G  F  S  H  I  G  S  K  K  P  L  T  S  P  L  T  A  C  P  E  E   : A  V  L  N  C  S  N  G  L  S  S  T  R  E  D  P  K  D  G :   S  K  G  A  P  S  N  L  N  E  L  A  R  F  W  K  D  L  K  T  L  H  L  E  K  T  Y  V  I  N  V  L   : G  Y  I  A  Y  N  F  V  I  G  A  Y  S  Y  W  G  P  K  A  G  Y  Y  I  Y  H  M  :  K  N  A  D  M  M  F  G  G  I  T  V  I  S  G  I  F  G  T  L  A  G  G  F  V  L  D  R  M  T  S  T  I  S  N  A  F  K  :  L  L  S  V  A  T  F  L  G  A  I  F  C  F  A  A  F  C  F  K  S  L  Y  A  F  I  P  L  F  A  I  G  E  L  L  V  F  A  T  Q  :  G  P  V  N  Y  V  C  L  H  S  V  N  P  G  L  R  P  L  A  M  A  M  S  T  V  S  I  H  I  F  G  D  V  P  S  S  P  L  V  G  V  V  Q  :  D  H  I  N  N  W  R  V  T  A  L  M  L  T  S  V  L  L  I  A  A  G  I  W  F  I   : G  I  F  L  H  S  V  D  R  S  N  E  D  S  E  N  Q  I  S  D  A  E  R  A  R  S  Q  P  L  L  K  E  K  S  N  E  P  I  D  V  P  V  E  S  S  *  Y  L  V  V  M  L  L  D  K  *  N  V  N  S  L  V  L  F  L  R  I  M  V  V  F  G  S  G  F  A  R  T  S  T  I  S  P  L  Y  L  P  P  P  I  G  T  C  T  I  *  L  C  P  P  P  R  L  N  V  N  S  L  I  L  I  S  V  *  I  M  L  Q  </second_frame>
            <third_frame>   K  S  K  A  F  G  E  G  R  K  Q  F  P  S  S  Q  R  I  N  I  Y  C  L  F  I  F  F  F  K  W  G  N  K  N  Q  T  Q  S  L  W  M  I  Q  I  Q  H  I  N  L  T  H  Q  L  L  M  C  L  Q  L  Q  I  W  Q  N  L  Q  F  H  R  H  Y  F  L  N  L  L  G  L  L  P  K   : G  C  L  R  Y  S  V  *  S  T  *  *  I  M  W  I  V  D  L  L  R  A  M  V  L  M  E  T  V  E  L  V  R  K  M  V  H  V  L  L  A  A  E  F   : R  V  N  L  I  *  V  I  F  R  M  G  S  Y  H  L  L  S  W  L  G  F  W  W  H  L  Q  Y  L  P  P  S  P  R   : G  S  I  R  L  D  L  L  E  L  D  *  Q  C  G  Q  *  L  L  L  V  V  V  S  Q  L  I  S  G  S  L  Q  H  A  E   : C  W  W  V  L  V  K  H  L  S  *  A  L  P  L  L  L  L  M  I  T  R  L  L  L  R :   K  Q  H  G  W  E  Y  F  T  C  V  Y  Q  L  V  *  H  L  A  M  Y  M  V  D  W :   L  A  I  I  L  A  G  V  G  H  F  G  L  R  H  Y  *  C  F  P  L  Q  F  *  V  Y  L  *  N  H  C  N  *  K  :  D  S  L  I  S  D  Q  K  N  H  *  L  L  L  *  L  L  A  Q  K  K  :  L  F  *  I  V  A  M  V  C  H  Q  H  G  K  I  P  R  M   : V  R  K  V  L  L  A  I  *  M  S  W  Q  D  F  G  R  I  *  K  R  F  I  L  K  R  L  M  S  S  M  S  *  :  D  T  *  H  I  I  L  *  L  V  H  I  P  I  G  D  P  R  L  V  I  T  Y  T  I  * :   K  M  Q  T  *  C  L  E  V  L  L  L  Y  L  E  Y  S  E  P  W  L  E  A  L  F  W  I  E  *  H  P  Q  Y  P  M  P  L  S :   F  S  Q  W  Q  H  F  L  E  Q  Y  F  A  L  L  P  F  V  L  R  V  Y  M  L  S  S  L  F  L  Q  *  E  N  C  L  Y  L  Q  H  R :   A  L  *  T  M  S  V  S  I  P  S  I  Q  V  *  D  H  W  L  W  R  C  L  L  F  Q  S  T  Y  L  V  M  F  L  R  L  L  L  W  G  L  S  R :   I  T  L  T  I  G  G  S  L  L  *  C  *  H  Q  F  Y  L  *  R  L  E  Y  G  L  *  :  A  S  F  F  T  V  *  I  D  P  T  K  I  V  R  I  K  *  V  M  L  R  E  Q  G  H  N  H  C  S  R  R  K  V  M  N  Q  L  T  S  L  L  N  P  P  S  I  W  L  *  C  Y  W  T  N  E  M  *  I  L  W  F  F  F  S  G  *  W  L  F  L  G  P  V  L  H  V  P  R  L  F  H  L  C  T  C  H  L  P  L  A  H  V  P  Y  N  S  V  L  L  R  G  L  M  *  I  L  *  F  L  S  L  C  K  *  C  C  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95623" stop="95780"/>
                    <exon start="96402" stop="96533"/>
                    <exon start="96827" stop="96928"/>
                    <exon start="98316" stop="98420"/>
                    <exon start="98542" stop="98617"/>
                    <exon start="100962" stop="101036"/>
                    <exon start="101133" stop="101235"/>
                    <exon start="101306" stop="101368"/>
                    <exon start="102100" stop="102154"/>
                    <exon start="102306" stop="102403"/>
                    <exon start="102588" stop="102664"/>
                    <exon start="103085" stop="103198"/>
                    <exon start="103524" stop="103643"/>
                    <exon start="104019" stop="104147"/>
                    <exon start="105234" stop="105312"/>
                    <exon start="105441" stop="105577"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1620</number_coding_nucleotides>
                  <number_encoded_amino_acids>540</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGKQEPDPKSLDDSNSTHKPDTSTLDVLAATDMAKPSISSSLLPQPSWFTAKRLLAVFCVINLINYVDRGSIASNGVNGNRRTCTKDGTCSSGSGIQGEFNLSNFQDGVISSAFMVGLLVASPIFASFAKRVNPFRLIGVGLTVWTIAIVGCGFSTNFWFIATCRMLVGVGEASFISLAAPFIDDNAPVAQKTAWLGIFYMCIPTGIAFGYVYGGLVGNHLSWRWAFWIEALLMLPFAVLGLFMKPLQLKGFSHIGSKKPLTSPLTACPEEAVLNCSNGLSSTREDPKDGSKGAPSNLNELARFWKDLKTLHLEKTYVINVLGYIAYNFVIGAYSYWGPKAGYYIYHMKNADMMFGGITVISGIFGTLAGGFVLDRMTSTISNAFKLLSVATFLGAIFCFAAFCFKSLYAFIPLFAIGELLVFATQGPVNYVCLHSVNPGLRPLAMAMSTVSIHIFGDVPSSPLVGVVQDHINNWRVTALMLTSVLLIAAGIWFIGIFLHSVDRSNEDSENQISDAERARSQPLLKEKSNEPIDVPVESS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="109921" PGL_stop="106136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109921" e_stop="109527"/>
            <exon e_start="109087" e_stop="108927"/>
            <exon e_start="108496" e_stop="108396"/>
            <exon e_start="108261" e_stop="108080"/>
            <exon e_start="106701" e_stop="106603"/>
            <exon e_start="106487" e_stop="106136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="0.937"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.396" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.059" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="109921" e_stop="109527" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="109526" i_stop="109088" i_length="439"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109087" e_stop="108927" e_length="161"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="108926" i_stop="108497" i_length="430"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108496" e_stop="108396" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.396" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108395" i_stop="108262" i_length="134"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108261" e_stop="108080" e_length="182"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108079" i_stop="106702" i_length="1378"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106701" e_stop="106603" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.059">
            <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115"/>
          </intron>
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            <gDNA_exon_coordinates>
              <exon start="109740" stop="109527"/>
              <exon start="109087" stop="108927"/>
              <exon start="108496" stop="108396"/>
              <exon start="108261" stop="108223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109731" stop="109527"/>
              <exon start="109087" stop="108927"/>
              <exon start="108496" stop="108396"/>
              <exon start="108261" stop="108100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109703" stop="109527"/>
              <exon start="109087" stop="108927"/>
              <exon start="108496" stop="108396"/>
              <exon start="108261" stop="108080"/>
              <exon start="106701" stop="106677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109703" stop="109527"/>
              <exon start="109087" stop="108927"/>
              <exon start="108496" stop="108396"/>
              <exon start="108261" stop="108087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109703" stop="109527"/>
              <exon start="109087" stop="108927"/>
              <exon start="108496" stop="108396"/>
              <exon start="108261" stop="108110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109703" stop="109527"/>
              <exon start="109087" stop="108927"/>
              <exon start="108496" stop="108396"/>
              <exon start="108261" stop="108142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109675" stop="109527"/>
              <exon start="109087" stop="108927"/>
              <exon start="108496" stop="108396"/>
              <exon start="108261" stop="108080"/>
              <exon start="106701" stop="106651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109568" stop="109527"/>
              <exon start="109087" stop="108927"/>
              <exon start="108496" stop="108396"/>
              <exon start="108261" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109568" stop="109527"/>
              <exon start="109087" stop="108927"/>
              <exon start="108496" stop="108396"/>
              <exon start="108261" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109553" stop="109527"/>
              <exon start="109087" stop="108927"/>
              <exon start="108496" stop="108396"/>
              <exon start="108261" stop="108080"/>
              <exon start="106701" stop="106642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109018" stop="108927"/>
              <exon start="108496" stop="108396"/>
              <exon start="108261" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109015" stop="108927"/>
              <exon start="108496" stop="108396"/>
              <exon start="108261" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417140" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108462" stop="108396"/>
              <exon start="108261" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108443" stop="108396"/>
              <exon start="108261" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108442" stop="108396"/>
              <exon start="108261" stop="108080"/>
              <exon start="106701" stop="106617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108410" stop="108396"/>
              <exon start="108261" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108410" stop="108396"/>
              <exon start="108261" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108410" stop="108396"/>
              <exon start="108261" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108401" stop="108396"/>
              <exon start="108261" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108235" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108233" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108233" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293570" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108233" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108115" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108109" stop="108080"/>
              <exon start="106701" stop="106603"/>
              <exon start="106487" stop="106139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106658" stop="106603"/>
              <exon start="106487" stop="106139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106638" stop="106603"/>
              <exon start="106487" stop="106139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222404" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAACAAATTAGACCATACCATTTGTGCATATATGTGGACTGTGGTTGATGTTAGGCAGTGATAGGCTGATAGCAGCACTAGCAACTTTCACTGTTTTATCTTCTCCAATAATTTCTGTTGCCATTAGGGACTGAACACTTGCCAGCGAAACAGCAATGGCGGCGGCAAGAATCATGGTATCAGCCAGCAACACTTTAACGGCTTCGCTCCTATCGAAAGGTCCATTACGAAGGCCCAACAATTTCAGCCTTTGCTTCAGAAACGGACCGGTGCAAAAGAAGCGTCTTTTCACTTGCAGTGCAATCTACAATCCCCAGATTCAGACTATAGAAGAAGGACAGCCAGAAACCCTAGATTACCGCGTGTTTTTTGCAGACAATTCCGGCAAAAAG : ATATCCCCTTGGCATGACATACCACTACATTTGGGTGATGGTGTTTTCAATTTTGTTGTTGAGATCCCCAAAGAATCAAGTGCAAAGATGGAAGTTGCTACAGATGAGCAACACACTCCTATTAAACAAGACACAAAGAAGGGGAAACTTCGATACTATCC : ATATAATATTCACTGGAACTATGGATTGCTTCCTCAAACATGGGAAGATCCTACTTTTGCGAATACCGAAGTTGAAGGGGCATTAGGTGATAATGACCCTG : TTGATGTTGTTGAGATTGGGGATAGCCGAGGTAAAATTGGCCAGGTTCTGAAGGTCAAACCTTTAGCTGCTCTGGCAATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCTATTTCACTAGATGATCCAAGAGCTTCACTTGTTAATGATGTTGATGATGTGGAAAAACATTTTCCG : GGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG : GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTAGAA</gDNA_template>
            <first_frame> S  K  Q  I  R  P  Y  H  L  C  I  Y  V  D  C  G  *  C  *  A  V  I  G  *  *  Q  H  *  Q  L  S  L  F  Y  L  L  Q  *  F  L  L  P  L  G  T  E  H  L  P  A  K  Q  Q  W  R  R  Q  E  S  W  Y  Q  P  A  T  L  *  R  L  R  S  Y  R  K  V  H  Y  E  G  P  T  I  S  A  F  A  S  E  T  D  R  C  K  R  S  V  F  S  L  A  V  Q  S  T  I  P  R  F  R  L  *  K  K  D  S  Q  K  P  *  I  T  A  C  F  L  Q  T  I  P  A  K  R :   Y  P  L  G  M  T  Y  H  Y  I  W  V  M  V  F  S  I  L  L  L  R  S  P  K  N  Q  V  Q  R  W  K  L  L  Q  M  S  N  T  L  L  L  N  K  T  Q  R  R  G  N  F  D  T  I   : H  I  I  F  T  G  T  M  D  C  F  L  K  H  G  K  I  L  L  L  R  I  P  K  L  K  G  H  *  V  I  M  T  L  :  L  M  L  L  R  L  G  I  A  E  V  K  L  A  R  F  *  R  S  N  L  *  L  L  W  Q  *  L  M  K  E  N  L  T  G  K  *  L  L  F  H  *  M  I  Q  E  L  H  L  L  M  M  L  M  M  W  K  N  I  F  R :   A  L  S  Q  Q  S  G  T  G  L  E  T  I  R  Y  L  M  E  N  L  L  I  G  L  L  L  A  T  S  Q  Q  T  R :   I  T  L  L  R  L  L  R  K  P  M  N  L  G  Q  S  W  S  R  D  Q  S  L  L  V  S  F  H  L  Y  S  D  *  *  S  S  *  A  S  C  L  *  P  K  L  D  M  E  N  V  P  M  I  V  L  F  R  L  G  W  K  P  I  H  I  L  K  K  D  F  F  V  I  S  Y  C  F  S  F  I  I  N  N  F  V  H  P  V  A  F  V  S  Y  P  E  R  K  Q  V  Y  *  H  M  I  *  S  S  F  S  R  C  I  N  *  K  L  E </first_frame>
            <second_frame>  A  N  K  L  D  H  T  I  C  A  Y  M  W  T  V  V  D  V  R  Q  *  *  A  D  S  S  T  S  N  F  H  C  F  I  F  S  N  N  F  C  C  H  *  G  L  N  T  C  Q  R  N  S  N  G  G  G  K  N  H  G  I  S  Q  Q  H  F  N  G  F  A  P  I  E  R  S  I  T  K  A  Q  Q  F  Q  P  L  L  Q  K  R  T  G  A  K  E  A  S  F  H  L  Q  C  N  L  Q  S  P  D  S  D  Y  R  R  R  T  A  R  N  P  R  L  P  R  V  F  C  R  Q  F  R  Q  K   : D  I  P  L  A  *  H  T  T  T  F  G  *  W  C  F  Q  F  C  C  *  D  P  Q  R  I  K  C  K  D  G  S  C  Y  R  *  A  T  H  S  Y  *  T  R  H  K  E  G  E  T  S  I  L  S  :  I  *  Y  S  L  E  L  W  I  A  S  S  N  M  G  R  S  Y  F  C  E  Y  R  S  *  R  G  I  R  *  *  *  P  C :   *  C  C  *  D  W  G  *  P  R  *  N  W  P  G  S  E  G  Q  T  F  S  C  S  G  N  D  *  *  R  R  T  *  L  E  N  S  C  Y  F  T  R  *  S  K  S  F  T  C  *  *  C  *  *  C  G  K  T  F  S   : G  H  S  H  S  N  Q  G  L  V  *  R  L  *  D  T  *  W  K  T  C  *  *  V  C  S  W  Q  Q  A  S  K  Q   : G  L  R  S  *  D  Y  Y  G  N  Q  *  I  L  G  K  A  G  Q  E  I  N  R  C  W  *  A  F  T  C  I  V  I  N  R  A  L  K  P  P  A  C  N  L  N  W  T  W  K  M  S  P  *  L  Y  S  F  V  W  G  G  S  Q  F  I  F  *  R  K  T  S  L  L  *  A  T  V  F  H  L  S  S  I  I  L  F  I  Q  *  H  L  *  V  I  Q  N  E  N  K  C  I  D  I  *  F  N  L  H  S  P  D  A  S  I  E  N  *   </second_frame>
            <third_frame>   Q  T  N  *  T  I  P  F  V  H  I  C  G  L  W  L  M  L  G  S  D  R  L  I  A  A  L  A  T  F  T  V  L  S  S  P  I  I  S  V  A  I  R  D  *  T  L  A  S  E  T  A  M  A  A  A  R  I  M  V  S  A  S  N  T  L  T  A  S  L  L  S  K  G  P  L  R  R  P  N  N  F  S  L  C  F  R  N  G  P  V  Q  K  K  R  L  F  T  C  S  A  I  Y  N  P  Q  I  Q  T  I  E  E  G  Q  P  E  T  L  D  Y  R  V  F  F  A  D  N  S  G  K  K  :  I  S  P  W  H  D  I  P  L  H  L  G  D  G  V  F  N  F  V  V  E  I  P  K  E  S  S  A  K  M  E  V  A  T  D  E  Q  H  T  P  I  K  Q  D  T  K  K  G  K  L  R  Y  Y  P :   Y  N  I  H  W  N  Y  G  L  L  P  Q  T  W  E  D  P  T  F  A  N  T  E  V  E  G  A  L  G  D  N  D  P   : V  D  V  V  E  I  G  D  S  R  G  K  I  G  Q  V  L  K  V  K  P  L  A  A  L  A  M  I  D  E  G  E  L  D  W  K  I  V  A  I  S  L  D  D  P  R  A  S  L  V  N  D  V  D  D  V  E  K  H  F  P  :  G  T  L  T  A  I  R  D  W  F  R  D  Y  K  I  P  D  G  K  P  A  N  R  F  A  L  G  N  K  P  A  N  K  :  D  Y  A  L  K  I  I  T  E  T  N  E  S  W  A  K  L  V  K  R  S  I  A  A  G  E  L  S  L  V  *  *  L  I  E  L  L  S  L  L  L  V  T  *  T  G  H  G  K  C  P  H  D  C  T  L  S  S  G  V  E  A  N  S  Y  F  K  E  R  L  L  C  Y  K  L  L  F  F  I  Y  H  Q  *  F  C  S  S  S  S  I  C  K  L  S  R  T  K  T  S  V  L  T  Y  D  L  I  F  I  L  Q  M  H  Q  L  K  I  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109784" stop="109527"/>
                    <exon start="109087" stop="108927"/>
                    <exon start="108496" stop="108396"/>
                    <exon start="108261" stop="108080"/>
                    <exon start="106701" stop="106603"/>
                    <exon start="106487" stop="106395"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLASETAMAAARIMVSASNTLTASLLSKGPLRRPNNFSLCFRNGPVQKKRLFTCSAIYNPQIQTIEEGQPETLDYRVFFADNSGKKISPWHDIPLHLGDGVFNFVVEIPKESSAKMEVATDEQHTPIKQDTKKGKLRYYPYNIHWNYGLLPQTWEDPTFANTEVEGALGDNDPVDVVEIGDSRGKIGQVLKVKPLAALAMIDEGELDWKIVAISLDDPRASLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANRFALGNKPANKDYALKIITETNESWAKLVKRSIAAGELSLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="107178" e_stop="106603"/>
            <exon e_start="106487" e_stop="106139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.059" e_score="0.939"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="107178" e_stop="106603" e_length="576"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.059">
            <gDNA_intron_boundary i_start="106602" i_stop="106488" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106487" e_stop="106139" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107178" stop="106603"/>
              <exon start="106487" stop="106405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106658" stop="106603"/>
              <exon start="106487" stop="106139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106638" stop="106603"/>
              <exon start="106487" stop="106139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222404" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCACATCTTATCGCTACTGATTAAGATTCTTACTGTTAATATCAGTATACATGTAATGATAAGTTTTAACGTTCTTGATTATGGTACTAAAACATAGCAGTGATTCCACATAGAGACTAGTGGTCCACTTTAATCTGCTGAATGAAGTTCCATAGTTTCTTGTTTCTCTTCTAGAAGTAAGTAAATGCTCTTGAATGCTAACACTACTAGAGAAGCAAGCCTGTCTGAGAAACTGTGTTTTGAGTAATGCCCACAACATGATGCCGATGTGGGTTGAAACTCTGATCTTTTGGTCACAGCATCTCAGTCTAATCATCTGAGCTAAAGCCTTTTCAATTCAATTTTTCTATTATCGTCCTTTCTGCTAGCAGTAGTAGTGAATTGAATCAGTGCGTGGATTTTTTATTAGGTAAGCTCCTTATTAATTTTCTATTAACTTGTCAATATTGTTTGAACTAATTCTGTGAATTTTTCAGGGCACTCTCACAGCAATCAGGGACTGGTTTAGAGACTATAAGATACCTGATGGAAAACCTGCTAATAGGTTTGCTCTTGGCAACAAGCCAGCAAACAAG : GATTACGCTCTTAAGATTATTACGGAAACCAATGAATCTTGGGCAAAGCTGGTCAAGAGATCAATCGCTGCTGGTGAGCTTTCACTTGTATAGTGATTAATAGAGCTCTTAAGCCTCCTGCTTGTAACCTAAACTGGACATGGAAAATGTCCCCATGATTGTACTCTTTCGTCTGGGGTGGAAGCCAATTCATATTTTAAAGAAAGACTTCTTTGTTATAAGCTACTGTTTTTCATTTATCATCAATAATTTTGTTCATCCAGTAGCATTTGTAAGTTATCCAGAACGAAAACAAGTGTATTGACATATGATTTAATCTTCATTCTCCAGATGCATCAATTGAAAATTA</gDNA_template>
            <first_frame> G  T  S  Y  R  Y  *  L  R  F  L  L  L  I  S  V  Y  M  *  *  *  V  L  T  F  L  I  M  V  L  K  H  S  S  D  S  T  *  R  L  V  V  H  F  N  L  L  N  E  V  P  *  F  L  V  S  L  L  E  V  S  K  C  S  *  M  L  T  L  L  E  K  Q  A  C  L  R  N  C  V  L  S  N  A  H  N  M  M  P  M  W  V  E  T  L  I  F  W  S  Q  H  L  S  L  I  I  *  A  K  A  F  S  I  Q  F  F  Y  Y  R  P  F  C  *  Q  *  *  *  I  E  S  V  R  G  F  F  I  R  *  A  P  Y  *  F  S  I  N  L  S  I  L  F  E  L  I  L  *  I  F  Q  G  T  L  T  A  I  R  D  W  F  R  D  Y  K  I  P  D  G  K  P  A  N  R  F  A  L  G  N  K  P  A  N  K  :  D  Y  A  L  K  I  I  T  E  T  N  E  S  W  A  K  L  V  K  R  S  I  A  A  G  E  L  S  L  V  *  *  L  I  E  L  L  S  L  L  L  V  T  *  T  G  H  G  K  C  P  H  D  C  T  L  S  S  G  V  E  A  N  S  Y  F  K  E  R  L  L  C  Y  K  L  L  F  F  I  Y  H  Q  *  F  C  S  S  S  S  I  C  K  L  S  R  T  K  T  S  V  L  T  Y  D  L  I  F  I  L  Q  M  H  Q  L  K  I  </first_frame>
            <second_frame>  A  H  L  I  A  T  D  *  D  S  Y  C  *  Y  Q  Y  T  C  N  D  K  F  *  R  S  *  L  W  Y  *  N  I  A  V  I  P  H  R  D  *  W  S  T  L  I  C  *  M  K  F  H  S  F  L  F  L  F  *  K  *  V  N  A  L  E  C  *  H  Y  *  R  S  K  P  V  *  E  T  V  F  *  V  M  P  T  T  *  C  R  C  G  L  K  L  *  S  F  G  H  S  I  S  V  *  S  S  E  L  K  P  F  Q  F  N  F  S  I  I  V  L  S  A  S  S  S  S  E  L  N  Q  C  V  D  F  L  L  G  K  L  L  I  N  F  L  L  T  C  Q  Y  C  L  N  *  F  C  E  F  F  R  A  L  S  Q  Q  S  G  T  G  L  E  T  I  R  Y  L  M  E  N  L  L  I  G  L  L  L  A  T  S  Q  Q  T  R :   I  T  L  L  R  L  L  R  K  P  M  N  L  G  Q  S  W  S  R  D  Q  S  L  L  V  S  F  H  L  Y  S  D  *  *  S  S  *  A  S  C  L  *  P  K  L  D  M  E  N  V  P  M  I  V  L  F  R  L  G  W  K  P  I  H  I  L  K  K  D  F  F  V  I  S  Y  C  F  S  F  I  I  N  N  F  V  H  P  V  A  F  V  S  Y  P  E  R  K  Q  V  Y  *  H  M  I  *  S  S  F  S  R  C  I  N  *  K  L </second_frame>
            <third_frame>   H  I  L  S  L  L  I  K  I  L  T  V  N  I  S  I  H  V  M  I  S  F  N  V  L  D  Y  G  T  K  T  *  Q  *  F  H  I  E  T  S  G  P  L  *  S  A  E  *  S  S  I  V  S  C  F  S  S  R  S  K  *  M  L  L  N  A  N  T  T  R  E  A  S  L  S  E  K  L  C  F  E  *  C  P  Q  H  D  A  D  V  G  *  N  S  D  L  L  V  T  A  S  Q  S  N  H  L  S  *  S  L  F  N  S  I  F  L  L  S  S  F  L  L  A  V  V  V  N  *  I  S  A  W  I  F  Y  *  V  S  S  L  L  I  F  Y  *  L  V  N  I  V  *  T  N  S  V  N  F  S  G  H  S  H  S  N  Q  G  L  V  *  R  L  *  D  T  *  W  K  T  C  *  *  V  C  S  W  Q  Q  A  S  K  Q   : G  L  R  S  *  D  Y  Y  G  N  Q  *  I  L  G  K  A  G  Q  E  I  N  R  C  W  *  A  F  T  C  I  V  I  N  R  A  L  K  P  P  A  C  N  L  N  W  T  W  K  M  S  P  *  L  Y  S  F  V  W  G  G  S  Q  F  I  F  *  R  K  T  S  L  L  *  A  T  V  F  H  L  S  S  I  I  L  F  I  Q  *  H  L  *  V  I  Q  N  E  N  K  C  I  D  I  *  F  N  L  H  S  P  D  A  S  I  E  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106718" stop="106603"/>
                    <exon start="106487" stop="106388"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCEFFRALSQQSGTGLETIRYLMENLLIGLLLATSQQTRITLLRLLRKPMNLGQSWSRDQSLLVSFHLYSD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106710" stop="106603"/>
                    <exon start="106487" stop="106395"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFQGTLTAIRDWFRDYKIPDGKPANRFALGNKPANKDYALKIITETNESWAKLVKRSIAAGELSLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="111506" PGL_stop="116101"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111506" e_stop="111774"/>
            <exon e_start="111870" e_stop="112010"/>
            <exon e_start="112765" e_stop="112877"/>
            <exon e_start="114355" e_stop="114434"/>
            <exon e_start="115497" e_stop="115660"/>
            <exon e_start="115807" e_stop="115945"/>
            <exon e_start="116036" e_stop="116101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.737" acc_prob="0.825" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111506" e_stop="111774" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111775" i_stop="111869" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111870" e_stop="112010" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="112011" i_stop="112764" i_length="754"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112765" e_stop="112877" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.956">
            <gDNA_intron_boundary i_start="112878" i_stop="114354" i_length="1477"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114355" e_stop="114434" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.895">
            <gDNA_intron_boundary i_start="114435" i_stop="115496" i_length="1062"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="115497" e_stop="115660" e_length="164"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.986">
            <gDNA_intron_boundary i_start="115661" i_stop="115806" i_length="146"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="115807" e_stop="115945" e_length="139"/>
          </exon>
          <intron i_serial="6" don_prob="0.737" acc_prob="0.825">
            <gDNA_intron_boundary i_start="115946" i_stop="116035" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="116036" e_stop="116101" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111506" stop="111774"/>
              <exon start="111870" stop="112010"/>
              <exon start="112765" stop="112877"/>
              <exon start="114355" stop="114434"/>
              <exon start="115497" stop="115592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111506" stop="111774"/>
              <exon start="111870" stop="112010"/>
              <exon start="112765" stop="112877"/>
              <exon start="114355" stop="114434"/>
              <exon start="115497" stop="115564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111506" stop="111774"/>
              <exon start="111870" stop="112010"/>
              <exon start="112765" stop="112802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111711" stop="111774"/>
              <exon start="111870" stop="112010"/>
              <exon start="112765" stop="112877"/>
              <exon start="114355" stop="114434"/>
              <exon start="115497" stop="115660"/>
              <exon start="115807" stop="115945"/>
              <exon start="116036" stop="116101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112834" stop="112877"/>
              <exon start="114355" stop="114434"/>
              <exon start="115497" stop="115639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588833" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTCTAATTTCACATTATCAATGGCTTTATCAGAGATCGAGATCGTTTCCGACTCCAATGATCAGCAAACTTCTGGTTTTCGAAACCCTAACGAACCAGCCATAGTCGATGTTTACGCTGCTTGCGCTTACGGTGATTTTGACAAACTCCGGAAATTCGTTGAAGTTGACGGCGTTTCCGTTTACCAGCCGGACGGCAACGGATATTACGCGCTTCAATGGGCTGCTCTCAACAATTTCGCTGATATTGTTCAATATATCATCGAG : CACGGGGGAAATGTCCACGCGGCCGACAATTCGGGACAGACTGCGTTGCATTGGGCGGCAGTGCGGGGATCAATTGCAGCTGCCGATGTGTTGTTGCAGAATGGTGCGCGGGTCGAGGCTGCTGATGTTAATGGTTATCGG : GCAATTCATGTTGCATCTCAGTATGGACAAACAGCTTTTGTAAATCACATTGTTGCGAAGTATCATGCGGACCTTAATGTACCAGATAATGATGGGAGGAGCCCTCTTCACTG : GGCTGCATACAAGGGATTTGGTGATACAATCAGGTTACTTCTATTCAGAGATGCTTTCCAAGGGAGACAAGATAAAGATG : GTTGCACTCCTTTGCATTGGGCAGCATTAAGAGGAAATGCAGAGGCTTGCACTTTACTTGTACATGCAGGCACAAAGGAGGATTTAACAGTAAAAGATAATGCAGGACTTACTCCTGCAGAGCTTGCATCTGATAAAGGTCATCTGCAAATAGCACGTATACTT : TCTAATGCCCAGCGGTCACAGAGAAAGCAGTGGAAAGACGAGACTTGCCCTGCTAAAATGGGGCATAAAGGCTATGCTCCAATTCTATTCTCCGTTGTTGTTGTCAACGTCATTCTTTTCATCAGTTCAGTCCTCTTCG : CTCCTGGTCTTACAAAAGTTACTGCTGTTGTCGCACTTTGGGGATGGACTGCTGTTTCCCTGGCAG</gDNA_template>
            <first_frame> N  F  L  I  S  H  Y  Q  W  L  Y  Q  R  S  R  S  F  P  T  P  M  I  S  K  L  L  V  F  E  T  L  T  N  Q  P  *  S  M  F  T  L  L  A  L  T  V  I  L  T  N  S  G  N  S  L  K  L  T  A  F  P  F  T  S  R  T  A  T  D  I  T  R  F  N  G  L  L  S  T  I  S  L  I  L  F  N  I  S  S  S :   T  G  E  M  S  T  R  P  T  I  R  D  R  L  R  C  I  G  R  Q  C  G  D  Q  L  Q  L  P  M  C  C  C  R  M  V  R  G  S  R  L  L  M  L  M  V  I  G :   Q  F  M  L  H  L  S  M  D  K  Q  L  L  *  I  T  L  L  R  S  I  M  R  T  L  M  Y  Q  I  M  M  G  G  A  L  F  T   : G  L  H  T  R  D  L  V  I  Q  S  G  Y  F  Y  S  E  M  L  S  K  G  D  K  I  K  M  :  V  A  L  L  C  I  G  Q  H  *  E  E  M  Q  R  L  A  L  Y  L  Y  M  Q  A  Q  R  R  I  *  Q  *  K  I  M  Q  D  L  L  L  Q  S  L  H  L  I  K  V  I  C  K  *  H  V  Y  F :   L  M  P  S  G  H  R  E  S  S  G  K  T  R  L  A  L  L  K  W  G  I  K  A  M  L  Q  F  Y  S  P  L  L  L  S  T  S  F  F  S  S  V  Q  S  S  S  :  L  L  V  L  Q  K  L  L  L  L  S  H  F  G  D  G  L  L  F  P  W  Q </first_frame>
            <second_frame>  I  F  *  F  H  I  I  N  G  F  I  R  D  R  D  R  F  R  L  Q  *  S  A  N  F  W  F  S  K  P  *  R  T  S  H  S  R  C  L  R  C  L  R  L  R  *  F  *  Q  T  P  E  I  R  *  S  *  R  R  F  R  L  P  A  G  R  Q  R  I  L  R  A  S  M  G  C  S  Q  Q  F  R  *  Y  C  S  I  Y  H  R   : A  R  G  K  C  P  R  G  R  Q  F  G  T  D  C  V  A  L  G  G  S  A  G  I  N  C  S  C  R  C  V  V  A  E  W  C  A  G  R  G  C  *  C  *  W  L  S   : G  N  S  C  C  I  S  V  W  T  N  S  F  C  K  S  H  C  C  E  V  S  C  G  P  *  C  T  R  *  *  W  E  E  P  S  S  L  :  G  C  I  Q  G  I  W  *  Y  N  Q  V  T  S  I  Q  R  C  F  P  R  E  T  R  *  R  W :   L  H  S  F  A  L  G  S  I  K  R  K  C  R  G  L  H  F  T  C  T  C  R  H  K  G  G  F  N  S  K  R  *  C  R  T  Y  S  C  R  A  C  I  *  *  R  S  S  A  N  S  T  Y  T   : F  *  C  P  A  V  T  E  K  A  V  E  R  R  D  L  P  C  *  N  G  A  *  R  L  C  S  N  S  I  L  R  C  C  C  Q  R  H  S  F  H  Q  F  S  P  L  R :   S  W  S  Y  K  S  Y  C  C  C  R  T  L  G  M  D  C  C  F  P  G   </second_frame>
            <third_frame>   F  S  N  F  T  L  S  M  A  L  S  E  I  E  I  V  S  D  S  N  D  Q  Q  T  S  G  F  R  N  P  N  E  P  A  I  V  D  V  Y  A  A  C  A  Y  G  D  F  D  K  L  R  K  F  V  E  V  D  G  V  S  V  Y  Q  P  D  G  N  G  Y  Y  A  L  Q  W  A  A  L  N  N  F  A  D  I  V  Q  Y  I  I  E  :  H  G  G  N  V  H  A  A  D  N  S  G  Q  T  A  L  H  W  A  A  V  R  G  S  I  A  A  A  D  V  L  L  Q  N  G  A  R  V  E  A  A  D  V  N  G  Y  R  :  A  I  H  V  A  S  Q  Y  G  Q  T  A  F  V  N  H  I  V  A  K  Y  H  A  D  L  N  V  P  D  N  D  G  R  S  P  L  H  W :   A  A  Y  K  G  F  G  D  T  I  R  L  L  L  F  R  D  A  F  Q  G  R  Q  D  K  D   : G  C  T  P  L  H  W  A  A  L  R  G  N  A  E  A  C  T  L  L  V  H  A  G  T  K  E  D  L  T  V  K  D  N  A  G  L  T  P  A  E  L  A  S  D  K  G  H  L  Q  I  A  R  I  L  :  S  N  A  Q  R  S  Q  R  K  Q  W  K  D  E  T  C  P  A  K  M  G  H  K  G  Y  A  P  I  L  F  S  V  V  V  V  N  V  I  L  F  I  S  S  V  L  F   : A  P  G  L  T  K  V  T  A  V  V  A  L  W  G  W  T  A  V  S  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111508" stop="111774"/>
                    <exon start="111870" stop="112010"/>
                    <exon start="112765" stop="112877"/>
                    <exon start="114355" stop="114434"/>
                    <exon start="115497" stop="115660"/>
                    <exon start="115807" stop="115945"/>
                    <exon start="116036" stop="116100"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSNFTLSMALSEIEIVSDSNDQQTSGFRNPNEPAIVDVYAACAYGDFDKLRKFVEVDGVSVYQPDGNGYYALQWAALNNFADIVQYIIEHGGNVHAADNSGQTALHWAAVRGSIAAADVLLQNGARVEAADVNGYRAIHVASQYGQTAFVNHIVAKYHADLNVPDNDGRSPLHWAAYKGFGDTIRLLLFRDAFQGRQDKDGCTPLHWAALRGNAEACTLLVHAGTKEDLTVKDNAGLTPAELASDKGHLQIARILSNAQRSQRKQWKDETCPAKMGHKGYAPILFSVVVVNVILFISSVLFAPGLTKVTAVVALWGWTAVSLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="118165" PGL_stop="119698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118165" e_stop="118209"/>
            <exon e_start="118326" e_stop="118474"/>
            <exon e_start="119084" e_stop="119698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.984" e_score="0.889"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="118165" e_stop="118209" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.984">
            <gDNA_intron_boundary i_start="118210" i_stop="118325" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118326" e_stop="118474" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="118475" i_stop="119083" i_length="609"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="119084" e_stop="119698" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118165" stop="118209"/>
              <exon start="118326" stop="118474"/>
              <exon start="119084" stop="119327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118333" stop="118474"/>
              <exon start="119084" stop="119698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118431" stop="118474"/>
              <exon start="119084" stop="119576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242927" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGTTCATTGACATCTATAATTGGTGCTGCGATTGCTCTTCAAA : GAATTTGGACATCAGTACCATTGTTGGTAGCTGATGAATCGTGGTTACATCATGTTTTCTTTGCGTATCCTGGTATAATCGCTTTTCTGTTCATGGATGGGGTTATTCTAATTGCTTCTGTAACTCTCTGTGTAATACAGATATCCCAG : ATAGCTCGGAATCTCACAACAAATGAGATGGCAAATGCTGTGAGATATGGTTATCTTCGTGGTCCAGATGGGAGGTTCCGAAATCCCTATAACCATGGATGTCGGAAGAATTGCTCTGACTTCCTTATCAATGGTTACACAAATGATGATGAGATAGCATGGCCACCATTGCAGCATGCCGCGAGCTAGCAGCATTTACAATCCCTGCTTGCTAAAGGATGCATATGTTACCAGACCCCTCTAGGTGACCTCTTCAGTGTTTGTGAAGGATACTAGGGGCTCTTGTTTATTTTGAGTCTCCCAATGTACCAAAAGAAAAGAAAATGTAGGGGCCTCTGGTTTATTTATATTGTAAAAAACTATATCATCCCAAAAAAATATAAGGGGGAAATCTGCAACTCTTGCTGCATTGGTGTTCTTTGTACATCTTTACATATCAACGTTCGAGTGATGTGAAGACTTTCGGTAATTAATGGGAGTATAAGGGGAATATGTGTATTATTATAAAGAAGAAATGTTACTGTAATTTTATTTCATACTCTAGTTACCGCTATGTACAACAATTACAAAAATATTCTTTTAACGTTACTTGAATATCCAATATTACTGTAGGGG</gDNA_template>
            <first_frame> W  V  H  *  H  L  *  L  V  L  R  L  L  F  K  :  E  F  G  H  Q  Y  H  C  W  *  L  M  N  R  G  Y  I  M  F  S  L  R  I  L  V  *  S  L  F  C  S  W  M  G  L  F  *  L  L  L  *  L  S  V  *  Y  R  Y  P  R :   *  L  G  I  S  Q  Q  M  R  W  Q  M  L  *  D  M  V  I  F  V  V  Q  M  G  G  S  E  I  P  I  T  M  D  V  G  R  I  A  L  T  S  L  S  M  V  T  Q  M  M  M  R  *  H  G  H  H  C  S  M  P  R  A  S  S  I  Y  N  P  C  L  L  K  D  A  Y  V  T  R  P  L  *  V  T  S  S  V  F  V  K  D  T  R  G  S  C  L  F  *  V  S  Q  C  T  K  R  K  E  N  V  G  A  S  G  L  F  I  L  *  K  T  I  S  S  Q  K  N  I  R  G  K  S  A  T  L  A  A  L  V  F  F  V  H  L  Y  I  S  T  F  E  *  C  E  D  F  R  *  L  M  G  V  *  G  E  Y  V  Y  Y  Y  K  E  E  M  L  L  *  F  Y  F  I  L  *  L  P  L  C  T  T  I  T  K  I  F  F  *  R  Y  L  N  I  Q  Y  Y  C  R   </first_frame>
            <second_frame>  G  F  I  D  I  Y  N  W  C  C  D  C  S  S  K :   N  L  D  I  S  T  I  V  G  S  *  *  I  V  V  T  S  C  F  L  C  V  S  W  Y  N  R  F  S  V  H  G  W  G  Y  S  N  C  F  C  N  S  L  C  N  T  D  I  P   : D  S  S  E  S  H  N  K  *  D  G  K  C  C  E  I  W  L  S  S  W  S  R  W  E  V  P  K  S  L  *  P  W  M  S  E  E  L  L  *  L  P  Y  Q  W  L  H  K  *  *  *  D  S  M  A  T  I  A  A  C  R  E  L  A  A  F  T  I  P  A  C  *  R  M  H  M  L  P  D  P  S  R  *  P  L  Q  C  L  *  R  I  L  G  A  L  V  Y  F  E  S  P  N  V  P  K  E  K  K  M  *  G  P  L  V  Y  L  Y  C  K  K  L  Y  H  P  K  K  I  *  G  G  N  L  Q  L  L  L  H  W  C  S  L  Y  I  F  T  Y  Q  R  S  S  D  V  K  T  F  G  N  *  W  E  Y  K  G  N  M  C  I  I  I  K  K  K  C  Y  C  N  F  I  S  Y  S  S  Y  R  Y  V  Q  Q  L  Q  K  Y  S  F  N  V  T  *  I  S  N  I  T  V  G  </second_frame>
            <third_frame>   G  S  L  T  S  I  I  G  A  A  I  A  L  Q   : R  I  W  T  S  V  P  L  L  V  A  D  E  S  W  L  H  H  V  F  F  A  Y  P  G  I  I  A  F  L  F  M  D  G  V  I  L  I  A  S  V  T  L  C  V  I  Q  I  S  Q  :  I  A  R  N  L  T  T  N  E  M  A  N  A  V  R  Y  G  Y  L  R  G  P  D  G  R  F  R  N  P  Y  N  H  G  C  R  K  N  C  S  D  F  L  I  N  G  Y  T  N  D  D  E  I  A  W  P  P  L  Q  H  A  A  S  *  Q  H  L  Q  S  L  L  A  K  G  C  I  C  Y  Q  T  P  L  G  D  L  F  S  V  C  E  G  Y  *  G  L  L  F  I  L  S  L  P  M  Y  Q  K  K  R  K  C  R  G  L  W  F  I  Y  I  V  K  N  Y  I  I  P  K  K  Y  K  G  E  I  C  N  S  C  C  I  G  V  L  C  T  S  L  H  I  N  V  R  V  M  *  R  L  S  V  I  N  G  S  I  R  G  I  C  V  L  L  *  R  R  N  V  T  V  I  L  F  H  T  L  V  T  A  M  Y  N  N  Y  K  N  I  L  L  T  L  L  E  Y  P  I  L  L  *  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118167" stop="118209"/>
                    <exon start="118326" stop="118474"/>
                    <exon start="119084" stop="119272"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLTSIIGAAIALQRIWTSVPLLVADESWLHHVFFAYPGIIAFLFMDGVILIASVTLCVIQISQIARNLTTNEMANAVRYGYLRGPDGRFRNPYNHGCRKNCSDFLINGYTNDDEIAWPPLQHAAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="122769" PGL_stop="119759"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122769" e_stop="122479"/>
            <exon e_start="122139" e_stop="121911"/>
            <exon e_start="121395" e_stop="121096"/>
            <exon e_start="120645" e_stop="120517"/>
            <exon e_start="120175" e_stop="119759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="0.996"/>
          <exon-intron don_prob="0.978" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="122769" e_stop="122479" e_length="291"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="122478" i_stop="122140" i_length="339"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122139" e_stop="121911" e_length="229"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121910" i_stop="121396" i_length="515"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121395" e_stop="121096" e_length="300"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="121095" i_stop="120646" i_length="450"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120645" e_stop="120517" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120516" i_stop="120176" i_length="341"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120175" e_stop="119759" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122769" stop="122479"/>
              <exon start="122139" stop="121983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122766" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122742" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121096"/>
              <exon start="120645" stop="120622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543007" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122729" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122727" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122727" stop="122479"/>
              <exon start="122139" stop="122054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122725" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122715" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122686" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122680" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121096"/>
              <exon start="120645" stop="120571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122679" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122661" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121096"/>
              <exon start="120645" stop="120624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122642" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122642" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122635" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122615" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122614" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121096"/>
              <exon start="120645" stop="120606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122614" stop="122479"/>
              <exon start="122139" stop="121911"/>
              <exon start="121395" stop="121096"/>
              <exon start="120645" stop="120617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121315" stop="121096"/>
              <exon start="120645" stop="120517"/>
              <exon start="120175" stop="119900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543008" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121249" stop="121096"/>
              <exon start="120645" stop="120517"/>
              <exon start="120175" stop="119759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTACTATTTTTTAGATAGGAGTATTTTGATGAAATATCAACTCACATTTGTCATCTTCTTATTGAAGCAGAAGAGTATCTTTCACATTTCAAAGCCCTAATATTTACATCAATGGCAGCTCAGACATTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCTCCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCC : GTATTATGGAGGAACATTATCGGAAAAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTTTAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTGGGTCCCTCGATCAG : ATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCTTTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTCAACTTTGGAGGATCTGTTACCGTACTTGAAGAGCAAGGGTGTGGGAGTGATCAGTGCTTCTCCTCTTTCAATGGGTCTTCTTACTGAGGCTGGTGGTCCCGAGTGGCACCCTGCTTCTTCTGAACTTAAG : GCTGCCTGCCGTGCTGCTGCTGATCACTGCAAAGGAAAGGGAAAGAATATCTCAAAATTAGCCTTGCAGTACAGCTTAGCAAATACCGACATTTCTTCCATACTAGTGGGGATGAAGTCTGTTAAAGAG : GTTGAGGAAAATATAGCAGCTGCCCTAGAAGTAGCAACGACTGGAATGGACGAAGAAGCATTATCAGAGATCACAGACATTCTGAAACCAGTGAAGAATCAGACATGGCCTAGCGGTATCCAACAAAGTTGATTTGTTTGTCAGTTCAACGAGGTCTTGTGAATTGTGATCTCCTGTTGTGCATGTTTTATTTGCACTTGGACATCTAAAACAAGTTCAAGTCGAAATTGTATGTTGTATTCTTCGAGTTTTTACATATCCAAGTTAGAATAATGAATAAACTTTGCAGTGTTTTAAGTATAGGAGGCCAGTTTCGATTGTTAAATGCCTTTTGGAACCTGTCTAAACAGAGACATGTCCAGTTTACCAAAAATTACTGTAATGTTTTAGTTTCGGGTACCATATTTGATAATTCAA</gDNA_template>
            <first_frame> F  S  T  I  F  *  I  G  V  F  *  *  N  I  N  S  H  L  S  S  S  Y  *  S  R  R  V  S  F  T  F  Q  S  P  N  I  Y  I  N  G  S  S  D  I  A  A  P  I  T  G  Q  H  W  T  Q  T  Q  L  C  R  L  R  R  F  A  S  R  Q  G  F  R  R  C  L  R  T  R  R  L  R  R  R  P  G  S  L  S  P  R  C  Q  F  L  *  Y  F  P  :  V  L  W  R  N  I  I  G  K  G  T  R  E  S  F  E  G  S  *  S  P  *  R  S  V  H  C  V  Y  K  M  W  E  V  Q  R  G  I  *  F  *  C  *  E  S  D  *  K  Y  *  *  E  L  G  E  A  A  A  *  L  C  *  Y  V  T  M  S  *  Y  *  I  W  V  P  R  S   : D  C  E  *  D  T  S  R  P  S  K  I  E  A  S  W  K  D  P  F  H  W  Y  N  R  P  T  F  G  D  I  H  L  C  A  *  S  R  P  S  R  H  S  *  R  H  P  V  I  L  S  L  Q  C  Q  R  F  N  F  G  G  S  V  T  V  L  E  E  Q  G  C  G  S  D  Q  C  F  S  S  F  N  G  S  S  Y  *  G  W  W  S  R  V  A  P  C  F  F  *  T  *   : G  C  L  P  C  C  C  *  S  L  Q  R  K  G  K  E  Y  L  K  I  S  L  A  V  Q  L  S  K  Y  R  H  F  F  H  T  S  G  D  E  V  C  *  R   : G  *  G  K  Y  S  S  C  P  R  S  S  N  D  W  N  G  R  R  S  I  I  R  D  H  R  H  S  E  T  S  E  E  S  D  M  A  *  R  Y  P  T  K  L  I  C  L  S  V  Q  R  G  L  V  N  C  D  L  L  L  C  M  F  Y  L  H  L  D  I  *  N  K  F  K  S  K  L  Y  V  V  F  F  E  F  L  H  I  Q  V  R  I  M  N  K  L  C  S  V  L  S  I  G  G  Q  F  R  L  L  N  A  F  W  N  L  S  K  Q  R  H  V  Q  F  T  K  N  Y  C  N  V  L  V  S  G  T  I  F  D  N  S  </first_frame>
            <second_frame>  F  L  L  F  F  R  *  E  Y  F  D  E  I  S  T  H  I  C  H  L  L  I  E  A  E  E  Y  L  S  H  F  K  A  L  I  F  T  S  M  A  A  Q  T  L  Q  L  R  S  L  G  N  T  G  L  K  L  S  S  V  G  F  G  A  S  P  L  G  K  V  F  G  D  V  S  E  Q  D  A  F  D  A  V  R  E  A  F  R  L  G  V  N  F  F  D  T  S  P :   Y  Y  G  G  T  L  S  E  K  V  L  G  K  A  L  K  A  L  K  V  P  R  D  Q  Y  I  V  S  T  K  C  G  R  Y  K  E  G  F  D  F  S  A  E  R  V  T  K  S  I  D  E  S  L  E  R  L  Q  L  D  Y  V  D  M  L  Q  C  H  D  I  E  F  G  S  L  D  Q  :  I  V  N  E  T  L  P  A  L  L  K  L  K  Q  A  G  K  I  R  F  I  G  I  T  G  L  P  L  G  I  F  T  Y  V  L  D  R  V  P  P  G  T  V  D  V  I  L  S  Y  C  H  Y  S  V  N  D  S  T  L  E  D  L  L  P  Y  L  K  S  K  G  V  G  V  I  S  A  S  P  L  S  M  G  L  L  T  E  A  G  G  P  E  W  H  P  A  S  S  E  L  K  :  A  A  C  R  A  A  A  D  H  C  K  G  K  G  K  N  I  S  K  L  A  L  Q  Y  S  L  A  N  T  D  I  S  S  I  L  V  G  M  K  S  V  K  E  :  V  E  E  N  I  A  A  A  L  E  V  A  T  T  G  M  D  E  E  A  L  S  E  I  T  D  I  L  K  P  V  K  N  Q  T  W  P  S  G  I  Q  Q  S  *  F  V  C  Q  F  N  E  V  L  *  I  V  I  S  C  C  A  C  F  I  C  T  W  T  S  K  T  S  S  S  R  N  C  M  L  Y  S  S  S  F  Y  I  S  K  L  E  *  *  I  N  F  A  V  F  *  V  *  E  A  S  F  D  C  *  M  P  F  G  T  C  L  N  R  D  M  S  S  L  P  K  I  T  V  M  F  *  F  R  V  P  Y  L  I  I  Q </second_frame>
            <third_frame>   F  Y  Y  F  L  D  R  S  I  L  M  K  Y  Q  L  T  F  V  I  F  L  L  K  Q  K  S  I  F  H  I  S  K  P  *  Y  L  H  Q  W  Q  L  R  H  C  S  S  D  H  W  A  T  L  D  S  N  S  A  L  S  A  S  A  L  R  L  S  A  R  F  S  A  M  S  P  N  K  T  P  S  T  P  S  G  K  P  F  A  S  V  S  I  S  L  I  L  P   : R  I  M  E  E  H  Y  R  K  R  Y  *  G  K  L  *  R  L  L  K  S  L  E  I  S  T  L  C  L  Q  N  V  G  G  T  K  R  D  L  I  L  V  L  R  E  *  L  K  V  L  M  R  A  W  R  G  C  S  L  I  M  L  I  C  Y  N  V  M  I  L  N  L  G  P  S  I  R :   L  *  M  R  H  F  P  P  F  *  N  *  S  K  L  E  R  S  V  S  L  V  *  P  A  Y  L  W  G  Y  S  L  M  C  L  I  A  S  L  Q  A  Q  L  T  S  S  C  H  I  V  T  T  V  S  T  I  Q  L  W  R  I  C  Y  R  T  *  R  A  R  V  W  E  *  S  V  L  L  L  F  Q  W  V  F  L  L  R  L  V  V  P  S  G  T  L  L  L  L  N  L  R :   L  P  A  V  L  L  L  I  T  A  K  E  R  E  R  I  S  Q  N  *  P  C  S  T  A  *  Q  I  P  T  F  L  P  Y  *  W  G  *  S  L  L  K  R :   L  R  K  I  *  Q  L  P  *  K  *  Q  R  L  E  W  T  K  K  H  Y  Q  R  S  Q  T  F  *  N  Q  *  R  I  R  H  G  L  A  V  S  N  K  V  D  L  F  V  S  S  T  R  S  C  E  L  *  S  P  V  V  H  V  L  F  A  L  G  H  L  K  Q  V  Q  V  E  I  V  C  C  I  L  R  V  F  T  Y  P  S  *  N  N  E  *  T  L  Q  C  F  K  Y  R  R  P  V  S  I  V  K  C  L  L  E  P  V  *  T  E  T  C  P  V  Y  Q  K  L  L  *  C  F  S  F  G  Y  H  I  *  *  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122747" stop="122479"/>
                    <exon start="122139" stop="121911"/>
                    <exon start="121395" stop="121096"/>
                    <exon start="120645" stop="120517"/>
                    <exon start="120175" stop="120044"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYFDEISTHICHLLIEAEEYLSHFKALIFTSMAAQTLQLRSLGNTGLKLSSVGFGASPLGKVFGDVSEQDAFDAVREAFRLGVNFFDTSPYYGGTLSEKVLGKALKALKVPRDQYIVSTKCGRYKEGFDFSAERVTKSIDESLERLQLDYVDMLQCHDIEFGSLDQIVNETLPALLKLKQAGKIRFIGITGLPLGIFTYVLDRVPPGTVDVILSYCHYSVNDSTLEDLLPYLKSKGVGVISASPLSMGLLTEAGGPEWHPASSELKAACRAAADHCKGKGKNISKLALQYSLANTDISSILVGMKSVKEVEENIAAALEVATTGMDEEALSEITDILKPVKNQTWPSGIQQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119966" stop="119760"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKFKSKLYVVFFEFLHIQVRIMNKLCSVLSIGGQFRLLNAFWNLSKQRHVQFTKNYCNVLVSGTIFDNS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="128231" PGL_stop="131074"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128254" e_stop="128300"/>
            <exon e_start="128397" e_stop="128447"/>
            <exon e_start="128687" e_stop="129289"/>
            <exon e_start="129706" e_stop="130087"/>
            <exon e_start="130421" e_stop="131074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.591" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.997"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="128254" e_stop="128300" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.937">
            <gDNA_intron_boundary i_start="128301" i_stop="128396" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128397" e_stop="128447" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.591" acc_prob="0.998">
            <gDNA_intron_boundary i_start="128448" i_stop="128686" i_length="239"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128687" e_stop="129289" e_length="603"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="129290" i_stop="129705" i_length="416"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="129706" e_stop="130087" e_length="382"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="130088" i_stop="130420" i_length="333"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="130421" e_stop="131074" e_length="654"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128254" stop="128300"/>
              <exon start="128397" stop="128447"/>
              <exon start="128687" stop="129218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129123" stop="129289"/>
              <exon start="129706" stop="130085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129776" stop="130087"/>
              <exon start="130421" stop="130633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129776" stop="130087"/>
              <exon start="130421" stop="130515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129777" stop="130087"/>
              <exon start="130421" stop="130722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129777" stop="130087"/>
              <exon start="130421" stop="130633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129777" stop="130087"/>
              <exon start="130421" stop="130596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130027" stop="130087"/>
              <exon start="130421" stop="131074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130480" stop="131061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130531" stop="131061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130640" stop="131074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201889" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAATATTAAGATTAGCTTTGTCCTGATCTCCTCTTAATTAATTAAA : GATTTCTCCACATTGTTTTTGGGATTTTTCAAGAATTTCGTAATTTACGAG : GAAATGGAATATTATGGGTTTAATCAACATTGGCCTATTAGCTCATATGATGAGCTAAGTGCAATATCTATAGCAAATTCATTTGGTCATGAGAATAATTTGCATGAATCATTCATCTCTCATCATCAGCCACTATTATGCCATAAAAGGCCTATAGAATTGTCCCAAATTATTGAAGAAAGGCCACTAAAAAATTCCAAAACAAGTCATAGCTGGAACAATACTATTGAAATTGATCAAATATTGAGCTCACAATCTGTGGTTTCTCCCAATTATTCCCATTTGATGAACTCATCAAATAATTACACTAACCAACAAGTTGTGACAATGAAGCCCAAAGAGGAAACAACTAATTTGTCATCAAGCAGTATAACTTTTGCAGCTGATCATTGTCATAACAATATGGTTTGTCATCAAGATTCTTTTGCTAATCAGAATTATATGATGTTTAAGGCTGCATCATGTCAAGGTGCTAATAAGAGTGTTAGCACTAATGGAAAATTAACACAAGCTCAAGATCATATCATTGCTGAGAGGAAAAGACGCGAAAAGCTTAGCCAAAGATTCATTGCTTTATCTGCTCTAATTCCCGGACTCAAAAAG : ATGGACAAGGCTTCAGTTCTTGGAGATGCAATAAAATACTTGAAACAACTTCAAGAGAAAAGTGAAGACGCTTGAGGAGCAAACAAAGAAAAAATCAGTGGAATCTGTTGTATTTGTTAAGAAATATGAACTTTATGGAGATGGTGAAAATTCTTCATCAGATGAAAATTACTCAAGTGGTACTGTGCCAGTTGATGAGGCACTCCCAGAAATTGAAGCAAGAATATCTGAAAAAGATGTATTAATTAGAATCCACTGTGAAAAAAGCAAAGGAGTTGTTGAGAAAACAGTTGCTGAAATTGAGAAACTTCATCTATCAGTCATCAATACATGTGCCTTGTCTTTTGGAACTTCTGCTCTTGACATTACCATAATTGCTCAG : ATGGATGAGGAATTTGCAATGACAGTAAAGGATCTTGTCAAAAATTTGCGCTCAGCTCTCAAAGTGTTTATGTGAAGGGGTGTGATCGTTGACCAACTTATCGTAATTTCTTTTAAAGCGTTTGATACAACAAAAGTCATTTTACCGTTTTCTTTTTCCAGTTCTATAATTGGATGTTTAGGGTTGTGAGGTCAAATTCACCTTTTTTTTTTTCAAAACCAAGTCCTTTGAAGCTTGTTTGCCGTGGGGTTAATTAAGTCATTTTTTAGGGAGGATTTATTTTTTAACCTCTCATTTTTGCATGGTTAAATTTGTTAATTTACCATGTTCAATTTATCCACCTATTGTAAAGATATAGTTGACCCCATGGCTTAGGCATTTTTTTTCTCTTTTATTATAAATATTTTTCCATGAGGAAGGTTGAGAAATTCAACGTATACCAAGTGGTTAGAGAAAAGGGACAATACAAGGTTTTATTTTTTAGGGGTGAAATTAGGGCATCAAGCTTTGTATCATTAGTTTGATTTAATTTGTCAATGTTTTAGACATCCTCTTGAAATTATCTTCGAATTTGGAGGGTCTCTTTTGTTGTTTATGTAATCTCATTTGGTTCATGATATGGAATAAAACCACACATTATTGTCAATCTCTTAA</gDNA_template>
            <first_frame> I  I  L  R  L  A  L  S  *  S  P  L  N  *  L  K :   I  S  P  H  C  F  W  D  F  S  R  I  S  *  F  T  R :   K  W  N  I  M  G  L  I  N  I  G  L  L  A  H  M  M  S  *  V  Q  Y  L  *  Q  I  H  L  V  M  R  I  I  C  M  N  H  S  S  L  I  I  S  H  Y  Y  A  I  K  G  L  *  N  C  P  K  L  L  K  K  G  H  *  K  I  P  K  Q  V  I  A  G  T  I  L  L  K  L  I  K  Y  *  A  H  N  L  W  F  L  P  I  I  P  I  *  *  T  H  Q  I  I  T  L  T  N  K  L  *  Q  *  S  P  K  R  K  Q  L  I  C  H  Q  A  V  *  L  L  Q  L  I  I  V  I  T  I  W  F  V  I  K  I  L  L  L  I  R  I  I  *  C  L  R  L  H  H  V  K  V  L  I  R  V  L  A  L  M  E  N  *  H  K  L  K  I  I  S  L  L  R  G  K  D  A  K  S  L  A  K  D  S  L  L  Y  L  L  *  F  P  D  S  K  R :   W  T  R  L  Q  F  L  E  M  Q  *  N  T  *  N  N  F  K  R  K  V  K  T  L  E  E  Q  T  K  K  K  S  V  E  S  V  V  F  V  K  K  Y  E  L  Y  G  D  G  E  N  S  S  S  D  E  N  Y  S  S  G  T  V  P  V  D  E  A  L  P  E  I  E  A  R  I  S  E  K  D  V  L  I  R  I  H  C  E  K  S  K  G  V  V  E  K  T  V  A  E  I  E  K  L  H  L  S  V  I  N  T  C  A  L  S  F  G  T  S  A  L  D  I  T  I  I  A  Q  :  M  D  E  E  F  A  M  T  V  K  D  L  V  K  N  L  R  S  A  L  K  V  F  M  *  R  G  V  I  V  D  Q  L  I  V  I  S  F  K  A  F  D  T  T  K  V  I  L  P  F  S  F  S  S  S  I  I  G  C  L  G  L  *  G  Q  I  H  L  F  F  F  Q  N  Q  V  L  *  S  L  F  A  V  G  L  I  K  S  F  F  R  E  D  L  F  F  N  L  S  F  L  H  G  *  I  C  *  F  T  M  F  N  L  S  T  Y  C  K  D  I  V  D  P  M  A  *  A  F  F  F  S  F  I  I  N  I  F  P  *  G  R  L  R  N  S  T  Y  T  K  W  L  E  K  R  D  N  T  R  F  Y  F  L  G  V  K  L  G  H  Q  A  L  Y  H  *  F  D  L  I  C  Q  C  F  R  H  P  L  E  I  I  F  E  F  G  G  S  L  L  L  F  M  *  S  H  L  V  H  D  M  E  *  N  H  T  L  L  S  I  S  * </first_frame>
            <second_frame>  *  Y  *  D  *  L  C  P  D  L  L  L  I  N  *   : R  F  L  H  I  V  F  G  I  F  Q  E  F  R  N  L  R   : G  N  G  I  L  W  V  *  S  T  L  A  Y  *  L  I  *  *  A  K  C  N  I  Y  S  K  F  I  W  S  *  E  *  F  A  *  I  I  H  L  S  S  S  A  T  I  M  P  *  K  A  Y  R  I  V  P  N  Y  *  R  K  A  T  K  K  F  Q  N  K  S  *  L  E  Q  Y  Y  *  N  *  S  N  I  E  L  T  I  C  G  F  S  Q  L  F  P  F  D  E  L  I  K  *  L  H  *  P  T  S  C  D  N  E  A  Q  R  G  N  N  *  F  V  I  K  Q  Y  N  F  C  S  *  S  L  S  *  Q  Y  G  L  S  S  R  F  F  C  *  S  E  L  Y  D  V  *  G  C  I  M  S  R  C  *  *  E  C  *  H  *  W  K  I  N  T  S  S  R  S  Y  H  C  *  E  E  K  T  R  K  A  *  P  K  I  H  C  F  I  C  S  N  S  R  T  Q  K   : D  G  Q  G  F  S  S  W  R  C  N  K  I  L  E  T  T  S  R  E  K  *  R  R  L  R  S  K  Q  R  K  N  Q  W  N  L  L  Y  L  L  R  N  M  N  F  M  E  M  V  K  I  L  H  Q  M  K  I  T  Q  V  V  L  C  Q  L  M  R  H  S  Q  K  L  K  Q  E  Y  L  K  K  M  Y  *  L  E  S  T  V  K  K  A  K  E  L  L  R  K  Q  L  L  K  L  R  N  F  I  Y  Q  S  S  I  H  V  P  C  L  L  E  L  L  L  L  T  L  P  *  L  L  R :   W  M  R  N  L  Q  *  Q  *  R  I  L  S  K  I  C  A  Q  L  S  K  C  L  C  E  G  V  *  S  L  T  N  L  S  *  F  L  L  K  R  L  I  Q  Q  K  S  F  Y  R  F  L  F  P  V  L  *  L  D  V  *  G  C  E  V  K  F  T  F  F  F  F  K  T  K  S  F  E  A  C  L  P  W  G  *  L  S  H  F  L  G  R  I  Y  F  L  T  S  H  F  C  M  V  K  F  V  N  L  P  C  S  I  Y  P  P  I  V  K  I  *  L  T  P  W  L  R  H  F  F  S  L  L  L  *  I  F  F  H  E  E  G  *  E  I  Q  R  I  P  S  G  *  R  K  G  T  I  Q  G  F  I  F  *  G  *  N  *  G  I  K  L  C  I  I  S  L  I  *  F  V  N  V  L  D  I  L  L  K  L  S  S  N  L  E  G  L  F  C  C  L  C  N  L  I  W  F  M  I  W  N  K  T  T  H  Y  C  Q  S  L   </second_frame>
            <third_frame>   N  I  K  I  S  F  V  L  I  S  S  *  L  I  K  :  D  F  S  T  L  F  L  G  F  F  K  N  F  V  I  Y  E  :  E  M  E  Y  Y  G  F  N  Q  H  W  P  I  S  S  Y  D  E  L  S  A  I  S  I  A  N  S  F  G  H  E  N  N  L  H  E  S  F  I  S  H  H  Q  P  L  L  C  H  K  R  P  I  E  L  S  Q  I  I  E  E  R  P  L  K  N  S  K  T  S  H  S  W  N  N  T  I  E  I  D  Q  I  L  S  S  Q  S  V  V  S  P  N  Y  S  H  L  M  N  S  S  N  N  Y  T  N  Q  Q  V  V  T  M  K  P  K  E  E  T  T  N  L  S  S  S  S  I  T  F  A  A  D  H  C  H  N  N  M  V  C  H  Q  D  S  F  A  N  Q  N  Y  M  M  F  K  A  A  S  C  Q  G  A  N  K  S  V  S  T  N  G  K  L  T  Q  A  Q  D  H  I  I  A  E  R  K  R  R  E  K  L  S  Q  R  F  I  A  L  S  A  L  I  P  G  L  K  K  :  M  D  K  A  S  V  L  G  D  A  I  K  Y  L  K  Q  L  Q  E  K  S  E  D  A  *  G  A  N  K  E  K  I  S  G  I  C  C  I  C  *  E  I  *  T  L  W  R  W  *  K  F  F  I  R  *  K  L  L  K  W  Y  C  A  S  *  *  G  T  P  R  N  *  S  K  N  I  *  K  R  C  I  N  *  N  P  L  *  K  K  Q  R  S  C  *  E  N  S  C  *  N  *  E  T  S  S  I  S  H  Q  Y  M  C  L  V  F  W  N  F  C  S  *  H  Y  H  N  C  S   : D  G  *  G  I  C  N  D  S  K  G  S  C  Q  K  F  A  L  S  S  Q  S  V  Y  V  K  G  C  D  R  *  P  T  Y  R  N  F  F  *  S  V  *  Y  N  K  S  H  F  T  V  F  F  F  Q  F  Y  N  W  M  F  R  V  V  R  S  N  S  P  F  F  F  S  K  P  S  P  L  K  L  V  C  R  G  V  N  *  V  I  F  *  G  G  F  I  F  *  P  L  I  F  A  W  L  N  L  L  I  Y  H  V  Q  F  I  H  L  L  *  R  Y  S  *  P  H  G  L  G  I  F  F  L  F  Y  Y  K  Y  F  S  M  R  K  V  E  K  F  N  V  Y  Q  V  V  R  E  K  G  Q  Y  K  V  L  F  F  R  G  E  I  R  A  S  S  F  V  S  L  V  *  F  N  L  S  M  F  *  T  S  S  *  N  Y  L  R  I  W  R  V  S  F  V  V  Y  V  I  S  F  G  S  *  Y  G  I  K  P  H  I  I  V  N  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128292" stop="128300"/>
                    <exon start="128397" stop="128447"/>
                    <exon start="128687" stop="129289"/>
                    <exon start="129706" stop="129780"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIKDFSTLFLGFFKNFVIYEEMEYYGFNQHWPISSYDELSAISIANSFGHENNLHESFISHHQPLLCHKRPIELSQIIEERPLKNSKTSHSWNNTIEIDQILSSQSVVSPNYSHLMNSSNNYTNQQVVTMKPKEETTNLSSSSITFAADHCHNNMVCHQDSFANQNYMMFKAASCQGANKSVSTNGKLTQAQDHIIAERKRREKLSQRFIALSALIPGLKKMDKASVLGDAIKYLKQLQEKSEDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129749" stop="130087"/>
                    <exon start="130421" stop="130495"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNFKRKVKTLEEQTKKKSVESVVFVKKYELYGDGENSSSDENYSSGTVPVDEALPEIEARISEKDVLIRIHCEKSKGVVEKTVAEIEKLHLSVINTCALSFGTSALDITIIAQMDEEFAMTVKDLVKNLRSALKVFM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="128231" e_stop="128814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="128231" e_stop="128814" e_length="584"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128231" stop="128814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATCTCCAACTTTATAGGACATAATATTAAGATTAGCTTTGTCCTGATCTCCTCTTAATTAATTAAAGTAAGTCACTAATTCCTTTAATTTCCTTATATATTTTACTTTTTATGTGTATCCATTTCCACAATTTTATTTGGATTTTTTTTTATTTTTGTTCAGGATTTCTCCACATTGTTTTTGGGATTTTTCAAGAATTTCGTAATTTACGAGGTACAATTCTATCCACTGGAGCGAAATAAACTTTTAGCGAGAATTAAAATTTTTTCTTTTTACTCGATAGAATTGCCACTTAAATATAAAATAGTCAATTGTGGGTAAAAAAAAAGTTATTTTTGTTGCAAAAATGTGTGGTTTCAAAGCCCAAACTCTTAAAAATCTAGACAATTTTTCACGTTTTTTTTTTCAAGATTATTGAAATTTAGAATTGAATATTTATATTTTTGTTGCAGGAAATGGAATATTATGGGTTTAATCAACATTGGCCTATTAGCTCATATGATGAGCTAAGTGCAATATCTATAGCAAATTCATTTGGTCATGAGAATAATTTGCATGAATCATTCATCTCTCATCATCA</gDNA_template>
            <first_frame> K  N  L  Q  L  Y  R  T  *  Y  *  D  *  L  C  P  D  L  L  L  I  N  *  S  K  S  L  I  P  L  I  S  L  Y  I  L  L  F  M  C  I  H  F  H  N  F  I  W  I  F  F  Y  F  C  S  G  F  L  H  I  V  F  G  I  F  Q  E  F  R  N  L  R  G  T  I  L  S  T  G  A  K  *  T  F  S  E  N  *  N  F  F  F  L  L  D  R  I  A  T  *  I  *  N  S  Q  L  W  V  K  K  K  L  F  L  L  Q  K  C  V  V  S  K  P  K  L  L  K  I  *  T  I  F  H  V  F  F  F  K  I  I  E  I  *  N  *  I  F  I  F  L  L  Q  E  M  E  Y  Y  G  F  N  Q  H  W  P  I  S  S  Y  D  E  L  S  A  I  S  I  A  N  S  F  G  H  E  N  N  L  H  E  S  F  I  S  H  H   </first_frame>
            <second_frame>  K  I  S  N  F  I  G  H  N  I  K  I  S  F  V  L  I  S  S  *  L  I  K  V  S  H  *  F  L  *  F  P  Y  I  F  Y  F  L  C  V  S  I  S  T  I  L  F  G  F  F  F  I  F  V  Q  D  F  S  T  L  F  L  G  F  F  K  N  F  V  I  Y  E  V  Q  F  Y  P  L  E  R  N  K  L  L  A  R  I  K  I  F  S  F  Y  S  I  E  L  P  L  K  Y  K  I  V  N  C  G  *  K  K  S  Y  F  C  C  K  N  V  W  F  Q  S  P  N  S  *  K  S  R  Q  F  F  T  F  F  F  S  R  L  L  K  F  R  I  E  Y  L  Y  F  C  C  R  K  W  N  I  M  G  L  I  N  I  G  L  L  A  H  M  M  S  *  V  Q  Y  L  *  Q  I  H  L  V  M  R  I  I  C  M  N  H  S  S  L  I  I  </second_frame>
            <third_frame>   K  S  P  T  L  *  D  I  I  L  R  L  A  L  S  *  S  P  L  N  *  L  K  *  V  T  N  S  F  N  F  L  I  Y  F  T  F  Y  V  Y  P  F  P  Q  F  Y  L  D  F  F  L  F  L  F  R  I  S  P  H  C  F  W  D  F  S  R  I  S  *  F  T  R  Y  N  S  I  H  W  S  E  I  N  F  *  R  E  L  K  F  F  L  F  T  R  *  N  C  H  L  N  I  K  *  S  I  V  G  K  K  K  V  I  F  V  A  K  M  C  G  F  K  A  Q  T  L  K  N  L  D  N  F  S  R  F  F  F  Q  D  Y  *  N  L  E  L  N  I  Y  I  F  V  A  G  N  G  I  L  W  V  *  S  T  L  A  Y  *  L  I  *  *  A  K  C  N  I  Y  S  K  F  I  W  S  *  E  *  F  A  *  I  I  H  L  S  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128322" stop="128555"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPYIFYFLCVSISTILFGFFFIFVQDFSTLFLGFFKNFVIYEVQFYPLERNKLLARIKIFSFYSIELPLKYKIVNCG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="137027" PGL_stop="139738"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137027" e_stop="137289"/>
            <exon e_start="137644" e_stop="137979"/>
            <exon e_start="138746" e_stop="139738"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.942" e_score="1.000"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="137027" e_stop="137289" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="137290" i_stop="137643" i_length="354"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137644" e_stop="137979" e_length="336"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.942">
            <gDNA_intron_boundary i_start="137980" i_stop="138745" i_length="766"/>
          </intron>
          <exon e_serial="3" e_score="0.959">
            <gDNA_exon_boundary e_start="138746" e_stop="139738" e_length="993"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137027" stop="137289"/>
              <exon start="137644" stop="137979"/>
              <exon start="138746" stop="138770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137033" stop="137289"/>
              <exon start="137644" stop="137891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137034" stop="137289"/>
              <exon start="137644" stop="137839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137045" stop="137289"/>
              <exon start="137644" stop="137979"/>
              <exon start="138746" stop="138860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137048" stop="137289"/>
              <exon start="137644" stop="137979"/>
              <exon start="138746" stop="138884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137054" stop="137289"/>
              <exon start="137644" stop="137979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137054" stop="137289"/>
              <exon start="137644" stop="137979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137057" stop="137289"/>
              <exon start="137644" stop="137868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137057" stop="137289"/>
              <exon start="137644" stop="137866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137057" stop="137289"/>
              <exon start="137644" stop="137716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137058" stop="137289"/>
              <exon start="137644" stop="137979"/>
              <exon start="138746" stop="139011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137059" stop="137289"/>
              <exon start="137644" stop="137979"/>
              <exon start="138746" stop="138930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137059" stop="137289"/>
              <exon start="137644" stop="137979"/>
              <exon start="138746" stop="138763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137059" stop="137289"/>
              <exon start="137644" stop="137820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137065" stop="137289"/>
              <exon start="137644" stop="137979"/>
              <exon start="138746" stop="138881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137069" stop="137289"/>
              <exon start="137644" stop="137979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137111" stop="137289"/>
              <exon start="137644" stop="137979"/>
              <exon start="138746" stop="138936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137207" stop="137289"/>
              <exon start="137644" stop="137979"/>
              <exon start="138746" stop="138843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138823" stop="139550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138823" stop="139509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138856" stop="139519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139006" stop="139492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139006" stop="139415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139057" stop="139738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139089" stop="139723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139245" stop="139738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139450" stop="139675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAAAATAAGAAGAAGAAGAATCCATCTCTTAAGCATTACTTGAGATTTGAGAATTTCCCATTCTATTCCATTATTTTTTGAGACATCAAATCTCCTGTTCCTTAGAATTTCAAATTATTTATCAATGGATTTGAGACGATCATCTCGTTGTTGTTATCTCTTTGCCATATTTATTCTTGCCATTGCTGTCTGGTTTTCTCCATCTGCAGCTTCCATCGCTGGCAAAGATATTAATCCTCCATATCCTAAAGCTATTTCT : GACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT : CATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCTTCAACAGAACGATAAATGGCTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCTCGCTCAAGAGGGACCTCTCCTCTCTCTTAGAATTGTTGGTCCTACATCTCTTACATCCCCCACCTCACCATCTGCCCCTTCTGCAAACAAACTTAAGCTTAAACGGCTTGCACCTGGTCTTGTTGAGTTGTCATCAGTATCAAAATTGAAAGCCATGGACGCCATCTCCACTATTGATCTCCAGGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAAGGTTCTTTCAAGTTGTTAAAGGCAGATGTATCAGCCCAGACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAGCCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTGCCAGAGAAAATTGTGCAGGTTGATCCGATAACTATCGAGGACACAGTGGCACCCAGTGTGCAGTTGGGCAATGTCTCCATGTCAAAGACTCCAATTGTTCACCAACCTCCAAATCCATTCACCTTATAAACTCACTCTTTAGACGGGCAAGATTTGTGCTTGAGCAAAACTGTATAGATAAAATTGCCCTCTTCTTTTGTCCTCTGTTTTTATAGCTATTACATACATCAGGTACGAAGAGACCTAACTCTACGAATTCATCAAAGAAGTATCAGGAATATATGCCAGATCTTTTTG</gDNA_template>
            <first_frame> K  K  K  *  E  E  E  E  S  I  S  *  A  L  L  E  I  *  E  F  P  I  L  F  H  Y  F  L  R  H  Q  I  S  C  S  L  E  F  Q  I  I  Y  Q  W  I  *  D  D  H  L  V  V  V  I  S  L  P  Y  L  F  L  P  L  L  S  G  F  L  H  L  Q  L  P  S  L  A  K  I  L  I  L  H  I  L  K  L  F  L :   T  *  R  S  Q  L  *  R  V  *  V  F  K  R  R  I  S  R  Y  L  G  L  I  *  R  M  L  L  W  V  G  R  C  L  M  S  L  M  W  K  L  I  I  K  *  F  P  *  S  F  W  R  M  *  I  N  G  N  L  *  I  C  L  F  F  G  *  R  K  V  K  K  M  G  W  L  K  G  R  H  W  R  I  R  C  L  F  W  L  H  L  L  W  Q  V  P  W  S  C  G  S  R  M  P  R  T  *  E  F  H  Y  L :   M  M  W  M  L  G  S  *  G  K  *  F  *  P  M  V  L  S  L  L  S  R  V  P  D  L  L  A  C  G  T  L  *  N  F  H  C  P  S  T  E  R  *  M  A  L  P  L  V  C  W  H  W  L  N  I  Y  V  K  L  L  S  L  K  R  D  L  S  S  L  L  E  L  L  V  L  H  L  L  H  P  P  P  H  H  L  P  L  L  Q  T  N  L  S  L  N  G  L  H  L  V  L  L  S  C  H  Q  Y  Q  N  *  K  P  W  T  P  S  P  L  L  I  S  R  E  K  P  L  H  F  L  H  P  I  N  S  L  H  C  G  L  L  H  L  S  M  V  Q  T  R  T  C  L  V  L  R  P  C  F  L  I  Y  W  V  L  K  Q  V  K  K  V  L  S  S  C  *  R  Q  M  Y  Q  P  R  L  L  *  R  L  V  L  E  L  R  R  S  *  R  K  E  M  G  S  I  W  R  V  I  Q  S  G  E  L  S  L  K  Q  *  G  C  I  L  K  F  W  Q  R  *  M  V  T  K  L  C  Q  R  K  L  C  R  L  I  R  *  L  S  R  T  Q  W  H  P  V  C  S  W  A  M  S  P  C  Q  R  L  Q  L  F  T  N  L  Q  I  H  S  P  Y  K  L  T  L  *  T  G  K  I  C  A  *  A  K  L  Y  R  *  N  C  P  L  L  L  S  S  V  F  I  A  I  T  Y  I  R  Y  E  E  T  *  L  Y  E  F  I  K  E  V  S  G  I  Y  A  R  S  F   </first_frame>
            <second_frame>  K  K  N  K  K  K  K  N  P  S  L  K  H  Y  L  R  F  E  N  F  P  F  Y  S  I  I  F  *  D  I  K  S  P  V  P  *  N  F  K  L  F  I  N  G  F  E  T  I  I  S  L  L  L  S  L  C  H  I  Y  S  C  H  C  C  L  V  F  S  I  C  S  F  H  R  W  Q  R  Y  *  S  S  I  S  *  S  Y  F   : *  L  E  G  V  N  C  K  G  F  R  F  S  S  G  G  F  Q  D  I  W  V  *  F  E  G  C  S  C  G  *  V  G  V  L  *  V  *  C  G  S  *  *  *  S  N  S  L  K  A  F  G  G  C  E  *  M  G  I  C  R  F  A  Y  F  S  G  R  E  R  *  R  K  W  V  G  *  K  A  D  I  G  E  S  G  A  C  F  G  S  I  Y  F  G  R  S  H  G  A  V  D  P  G  C  Q  G  H  E  N  F  I  T   : S  *  C  G  C  W  G  V  E  E  S  D  F  S  R  W  C  C  R  Y  C  Q  G  C  Q  I  C  *  P  A  A  P  Y  R  T  S  T  A  L  Q  Q  N  D  K  W  L  C  L  W  Y  V  G  I  G  *  I  S  T  S  S  F  S  R  S  R  G  T  S  P  L  S  *  N  C  W  S  Y  I  S  Y  I  P  H  L  T  I  C  P  F  C  K  Q  T  *  A  *  T  A  C  T  W  S  C  *  V  V  I  S  I  K  I  E  S  H  G  R  H  L  H  Y  *  S  P  G  R  N  H  C  T  S  Y  T  Q  S  I  H  Y  I  V  A  C  Y  I  Y  Q  W  F  K  L  E  L  A  W  F  *  G  L  A  F  *  Y  T  G  S  *  S  R  *  K  R  F  F  Q  V  V  K  G  R  C  I  S  P  D  F  C  E  D  W  F  W  S  *  E  E  V  E  G  R  R  W  V  Q  F  G  G  L  S  R  V  E  N  *  A  *  N  S  K  D  A  F  *  S  S  G  K  G  R  W  *  Q  S  C  A  R  E  N  C  A  G  *  S  D  N  Y  R  G  H  S  G  T  Q  C  A  V  G  Q  C  L  H  V  K  D  S  N  C  S  P  T  S  K  S  I  H  L  I  N  S  L  F  R  R  A  R  F  V  L  E  Q  N  C  I  D  K  I  A  L  F  F  C  P  L  F  L  *  L  L  H  T  S  G  T  K  R  P  N  S  T  N  S  S  K  K  Y  Q  E  Y  M  P  D  L  F  </second_frame>
            <third_frame>   K  K  I  R  R  R  R  I  H  L  L  S  I  T  *  D  L  R  I  S  H  S  I  P  L  F  F  E  T  S  N  L  L  F  L  R  I  S  N  Y  L  S  M  D  L  R  R  S  S  R  C  C  Y  L  F  A  I  F  I  L  A  I  A  V  W  F  S  P  S  A  A  S  I  A  G  K  D  I  N  P  P  Y  P  K  A  I  S  :  D  L  K  E  S  I  V  K  G  L  G  F  Q  A  E  D  F  K  I  S  G  F  D  L  K  D  A  L  V  G  R  S  V  S  Y  E  F  D  V  E  V  D  N  K  V  I  P  L  K  L  L  E  D  V  N  K  W  E  F  V  D  L  P  I  F  R  V  E  K  G  E  E  N  G  L  V  E  R  Q  T  L  E  N  Q  V  P  V  L  A  P  F  T  L  A  G  P  M  E  L  W  I  Q  D  A  K  D  M  R  I  S  L  P  :  H  D  V  D  A  G  E  L  R  K  V  I  L  A  D  G  A  V  V  T  V  K  G  A  R  S  V  S  L  R  H  P  I  E  L  P  L  P  F  N  R  T  I  N  G  F  A  S  G  M  L  A  L  A  E  Y  L  R  Q  A  S  L  A  Q  E  G  P  L  L  S  L  R  I  V  G  P  T  S  L  T  S  P  T  S  P  S  A  P  S  A  N  K  L  K  L  K  R  L  A  P  G  L  V  E  L  S  S  V  S  K  L  K  A  M  D  A  I  S  T  I  D  L  Q  G  E  T  T  A  L  L  T  P  N  Q  F  T  T  L  W  P  V  T  S  I  N  G  S  N  S  N  L  L  G  F  E  A  L  L  S  N  I  L  G  P  K  A  G  K  K  G  S  F  K  L  L  K  A  D  V  S  A  Q  T  F  V  K  I  G  F  G  V  E  K  K  L  K  E  G  D  G  F  N  L  E  G  Y  P  E  W  R  T  K  P  E  T  V  R  M  H  F  E  V  L  A  K  V  D  G  D  K  V  V  P  E  K  I  V  Q  V  D  P  I  T  I  E  D  T  V  A  P  S  V  Q  L  G  N  V  S  M  S  K  T  P  I  V  H  Q  P  P  N  P  F  T  L  *  T  H  S  L  D  G  Q  D  L  C  L  S  K  T  V  *  I  K  L  P  S  S  F  V  L  C  F  Y  S  Y  Y  I  H  Q  V  R  R  D  L  T  L  R  I  H  Q  R  S  I  R  N  I  C  Q  I  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137074" stop="137289"/>
                    <exon start="137644" stop="137979"/>
                    <exon start="138746" stop="139570"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1374</number_coding_nucleotides>
                  <number_encoded_amino_acids>458</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLRISHSIPLFFETSNLLFLRISNYLSMDLRRSSRCCYLFAIFILAIAVWFSPSAASIAGKDINPPYPKAISDLKESIVKGLGFQAEDFKISGFDLKDALVGRSVSYEFDVEVDNKVIPLKLLEDVNKWEFVDLPIFRVEKGEENGLVERQTLENQVPVLAPFTLAGPMELWIQDAKDMRISLPHDVDAGELRKVILADGAVVTVKGARSVSLRHPIELPLPFNRTINGFASGMLALAEYLRQASLAQEGPLLSLRIVGPTSLTSPTSPSAPSANKLKLKRLAPGLVELSSVSKLKAMDAISTIDLQGETTALLTPNQFTTLWPVTSINGSNSNLLGFEALLSNILGPKAGKKGSFKLLKADVSAQTFVKIGFGVEKKLKEGDGFNLEGYPEWRTKPETVRMHFEVLAKVDGDKVVPEKIVQVDPITIEDTVAPSVQLGNVSMSKTPIVHQPPNPFTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="137639" e_stop="137979"/>
            <exon e_start="138746" e_stop="139738"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.942" e_score="0.991"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="137639" e_stop="137979" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.942">
            <gDNA_intron_boundary i_start="137980" i_stop="138745" i_length="766"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="138746" e_stop="139738" e_length="993"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137639" stop="137979"/>
              <exon start="138746" stop="139065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138823" stop="139550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138823" stop="139509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138856" stop="139519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139006" stop="139492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139006" stop="139415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139057" stop="139738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139089" stop="139723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139245" stop="139738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139450" stop="139675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTAGGACTTGAAGGAGTCAATTGTAAAGGGTTTAGGTTTTCAAGCGGAGGATTTCAAGATATCTGGGTTTGATTTGAAGGATGCTCTTGTGGGTAGGTCGGTGTCTTATGAGTTTGATGTGGAAGTTGATAATAAAGTAATTCCCTTAAAGCTTTTGGAGGATGTGAATAAATGGGAATTTGTAGATTTGCCTATTTTTCGGGTAGAGAAAGGTGAAGAAAATGGGTTGGTTGAAAGGCAGACATTGGAGAATCAGGTGCCTGTTTTGGCTCCATTTACTTTGGCAGGTCCCATGGAGCTGTGGATCCAGGATGCCAAGGACATGAGAATTTCATTACCT : CATGATGTGGATGCTGGGGAGTTGAGGAAAGTGATTTTAGCCGATGGTGCTGTCGTTACTGTCAAGGGTGCCAGATCTGTTAGCCTGCGGCACCCTATAGAACTTCCACTGCCCTTCAACAGAACGATAAATGGCTTTGCCTCTGGTATGTTGGCATTGGCTGAATATCTACGTCAAGCTTCTCTCGCTCAAGAGGGACCTCTCCTCTCTCTTAGAATTGTTGGTCCTACATCTCTTACATCCCCCACCTCACCATCTGCCCCTTCTGCAAACAAACTTAAGCTTAAACGGCTTGCACCTGGTCTTGTTGAGTTGTCATCAGTATCAAAATTGAAAGCCATGGACGCCATCTCCACTATTGATCTCCAGGGAGAAACCACTGCACTTCTTACACCCAATCAATTCACTACATTGTGGCCTGTTACATCTATCAATGGTTCAAACTCGAACTTGCTTGGTTTTGAGGCCTTGCTTTCTAATATACTGGGTCCTAAAGCAGGTAAAAAAGGTTCTTTCAAGTTGTTAAAGGCAGATGTATCAGCCCAGACTTTTGTGAAGATTGGTTTTGGAGTTGAGAAGAAGTTGAAGGAAGGAGATGGGTTCAATTTGGAGGGTTATCCAGAGTGGAGAACTAAGCCTGAAACAGTAAGGATGCATTTTGAAGTTCTGGCAAAGGTAGATGGTGACAAAGTTGTGCCAGAGAAAATTGTGCAGGTTGATCCGATAACTATCGAGGACACAGTGGCACCCAGTGTGCAGTTGGGCAATGTCTCCATGTCAAAGACTCCAATTGTTCACCAACCTCCAAATCCATTCACCTTATAAACTCACTCTTTAGACGGGCAAGATTTGTGCTTGAGCAAAACTGTATAGATAAAATTGCCCTCTTCTTTTGTCCTCTGTTTTTATAGCTATTACATACATCAGGTACGAAGAGACCTAACTCTACGAATTCATCAAAGAAGTATCAGGAATATATGCCAGATCTTTTTG</gDNA_template>
            <first_frame> C  R  T  *  R  S  Q  L  *  R  V  *  V  F  K  R  R  I  S  R  Y  L  G  L  I  *  R  M  L  L  W  V  G  R  C  L  M  S  L  M  W  K  L  I  I  K  *  F  P  *  S  F  W  R  M  *  I  N  G  N  L  *  I  C  L  F  F  G  *  R  K  V  K  K  M  G  W  L  K  G  R  H  W  R  I  R  C  L  F  W  L  H  L  L  W  Q  V  P  W  S  C  G  S  R  M  P  R  T  *  E  F  H  Y  L :   M  M  W  M  L  G  S  *  G  K  *  F  *  P  M  V  L  S  L  L  S  R  V  P  D  L  L  A  C  G  T  L  *  N  F  H  C  P  S  T  E  R  *  M  A  L  P  L  V  C  W  H  W  L  N  I  Y  V  K  L  L  S  L  K  R  D  L  S  S  L  L  E  L  L  V  L  H  L  L  H  P  P  P  H  H  L  P  L  L  Q  T  N  L  S  L  N  G  L  H  L  V  L  L  S  C  H  Q  Y  Q  N  *  K  P  W  T  P  S  P  L  L  I  S  R  E  K  P  L  H  F  L  H  P  I  N  S  L  H  C  G  L  L  H  L  S  M  V  Q  T  R  T  C  L  V  L  R  P  C  F  L  I  Y  W  V  L  K  Q  V  K  K  V  L  S  S  C  *  R  Q  M  Y  Q  P  R  L  L  *  R  L  V  L  E  L  R  R  S  *  R  K  E  M  G  S  I  W  R  V  I  Q  S  G  E  L  S  L  K  Q  *  G  C  I  L  K  F  W  Q  R  *  M  V  T  K  L  C  Q  R  K  L  C  R  L  I  R  *  L  S  R  T  Q  W  H  P  V  C  S  W  A  M  S  P  C  Q  R  L  Q  L  F  T  N  L  Q  I  H  S  P  Y  K  L  T  L  *  T  G  K  I  C  A  *  A  K  L  Y  R  *  N  C  P  L  L  L  S  S  V  F  I  A  I  T  Y  I  R  Y  E  E  T  *  L  Y  E  F  I  K  E  V  S  G  I  Y  A  R  S  F   </first_frame>
            <second_frame>  V  G  L  E  G  V  N  C  K  G  F  R  F  S  S  G  G  F  Q  D  I  W  V  *  F  E  G  C  S  C  G  *  V  G  V  L  *  V  *  C  G  S  *  *  *  S  N  S  L  K  A  F  G  G  C  E  *  M  G  I  C  R  F  A  Y  F  S  G  R  E  R  *  R  K  W  V  G  *  K  A  D  I  G  E  S  G  A  C  F  G  S  I  Y  F  G  R  S  H  G  A  V  D  P  G  C  Q  G  H  E  N  F  I  T   : S  *  C  G  C  W  G  V  E  E  S  D  F  S  R  W  C  C  R  Y  C  Q  G  C  Q  I  C  *  P  A  A  P  Y  R  T  S  T  A  L  Q  Q  N  D  K  W  L  C  L  W  Y  V  G  I  G  *  I  S  T  S  S  F  S  R  S  R  G  T  S  P  L  S  *  N  C  W  S  Y  I  S  Y  I  P  H  L  T  I  C  P  F  C  K  Q  T  *  A  *  T  A  C  T  W  S  C  *  V  V  I  S  I  K  I  E  S  H  G  R  H  L  H  Y  *  S  P  G  R  N  H  C  T  S  Y  T  Q  S  I  H  Y  I  V  A  C  Y  I  Y  Q  W  F  K  L  E  L  A  W  F  *  G  L  A  F  *  Y  T  G  S  *  S  R  *  K  R  F  F  Q  V  V  K  G  R  C  I  S  P  D  F  C  E  D  W  F  W  S  *  E  E  V  E  G  R  R  W  V  Q  F  G  G  L  S  R  V  E  N  *  A  *  N  S  K  D  A  F  *  S  S  G  K  G  R  W  *  Q  S  C  A  R  E  N  C  A  G  *  S  D  N  Y  R  G  H  S  G  T  Q  C  A  V  G  Q  C  L  H  V  K  D  S  N  C  S  P  T  S  K  S  I  H  L  I  N  S  L  F  R  R  A  R  F  V  L  E  Q  N  C  I  D  K  I  A  L  F  F  C  P  L  F  L  *  L  L  H  T  S  G  T  K  R  P  N  S  T  N  S  S  K  K  Y  Q  E  Y  M  P  D  L  F  </second_frame>
            <third_frame>   *  D  L  K  E  S  I  V  K  G  L  G  F  Q  A  E  D  F  K  I  S  G  F  D  L  K  D  A  L  V  G  R  S  V  S  Y  E  F  D  V  E  V  D  N  K  V  I  P  L  K  L  L  E  D  V  N  K  W  E  F  V  D  L  P  I  F  R  V  E  K  G  E  E  N  G  L  V  E  R  Q  T  L  E  N  Q  V  P  V  L  A  P  F  T  L  A  G  P  M  E  L  W  I  Q  D  A  K  D  M  R  I  S  L  P  :  H  D  V  D  A  G  E  L  R  K  V  I  L  A  D  G  A  V  V  T  V  K  G  A  R  S  V  S  L  R  H  P  I  E  L  P  L  P  F  N  R  T  I  N  G  F  A  S  G  M  L  A  L  A  E  Y  L  R  Q  A  S  L  A  Q  E  G  P  L  L  S  L  R  I  V  G  P  T  S  L  T  S  P  T  S  P  S  A  P  S  A  N  K  L  K  L  K  R  L  A  P  G  L  V  E  L  S  S  V  S  K  L  K  A  M  D  A  I  S  T  I  D  L  Q  G  E  T  T  A  L  L  T  P  N  Q  F  T  T  L  W  P  V  T  S  I  N  G  S  N  S  N  L  L  G  F  E  A  L  L  S  N  I  L  G  P  K  A  G  K  K  G  S  F  K  L  L  K  A  D  V  S  A  Q  T  F  V  K  I  G  F  G  V  E  K  K  L  K  E  G  D  G  F  N  L  E  G  Y  P  E  W  R  T  K  P  E  T  V  R  M  H  F  E  V  L  A  K  V  D  G  D  K  V  V  P  E  K  I  V  Q  V  D  P  I  T  I  E  D  T  V  A  P  S  V  Q  L  G  N  V  S  M  S  K  T  P  I  V  H  Q  P  P  N  P  F  T  L  *  T  H  S  L  D  G  Q  D  L  C  L  S  K  T  V  *  I  K  L  P  S  S  F  V  L  C  F  Y  S  Y  Y  I  H  Q  V  R  R  D  L  T  L  R  I  H  Q  R  S  I  R  N  I  C  Q  I  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137644" stop="137979"/>
                    <exon start="138746" stop="139570"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1158</number_coding_nucleotides>
                  <number_encoded_amino_acids>386</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLKESIVKGLGFQAEDFKISGFDLKDALVGRSVSYEFDVEVDNKVIPLKLLEDVNKWEFVDLPIFRVEKGEENGLVERQTLENQVPVLAPFTLAGPMELWIQDAKDMRISLPHDVDAGELRKVILADGAVVTVKGARSVSLRHPIELPLPFNRTINGFASGMLALAEYLRQASLAQEGPLLSLRIVGPTSLTSPTSPSAPSANKLKLKRLAPGLVELSSVSKLKAMDAISTIDLQGETTALLTPNQFTTLWPVTSINGSNSNLLGFEALLSNILGPKAGKKGSFKLLKADVSAQTFVKIGFGVEKKLKEGDGFNLEGYPEWRTKPETVRMHFEVLAKVDGDKVVPEKIVQVDPITIEDTVAPSVQLGNVSMSKTPIVHQPPNPFTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="139749" PGL_stop="139026"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139749" e_stop="139026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="139749" e_stop="139026" e_length="724"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139749" stop="139215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139748" stop="139026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554306" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTTGAATACCAAAAAGATCTGGCATATATTCCTGATACTTCTTTGATGAATTCGTAGAGTTAGGTCTCTTCGTACCTGATGTATGTAATAGCTATAAAAACAGAGGACAAAAGAAGAGGGCAATTTTATCTATACAGTTTTGCTCAAGCACAAATCTTGCCCGTCTAAAGAGTGAGTTTATAAGGTGAATGGATTTGGAGGTTGGTGAACAATTGGAGTCTTTGACATGGAGACATTGCCCAACTGCACACTGGGTGCCACTGTGTCCTCGATAGTTATCGGATCAACCTGCACAATTTTCTCTGGCACAACTTTGTCACCATCTACCTTTGCCAGAACTTCAAAATGCATCCTTACTGTTTCAGGCTTAGTTCTCCACTCTGGATAACCCTCCAAATTGAACCCATCTCCTTCCTTCAACTTCTTCTCAACTCCAAAACCAATCTTCACAAAAGTCTGGGCTGATACATCTGCCTTTAACAACTTGAAAGAACCTTTTTTACCTGCTTTAGGACCCAGTATATTAGAAAGCAAGGCCTCAAAACCAAGCAAGTTCGAGTTTGAACCATTGATAGATGTAACAGGCCACAATGTAGTGAATTGATTGGGTGTAAGAAGTGCAGTGGTTTCTCCCTGGAGATCAATAGTGGAGATGGCGTCCATGGCTTTCAATTTTGATACTGATGACAACTCAACAAGACCAGGTGCAAGCCGTTTAAGCT</gDNA_template>
            <first_frame> L  L  N  T  K  K  I  W  H  I  F  L  I  L  L  *  *  I  R  R  V  R  S  L  R  T  *  C  M  *  *  L  *  K  Q  R  T  K  E  E  G  N  F  I  Y  T  V  L  L  K  H  K  S  C  P  S  K  E  *  V  Y  K  V  N  G  F  G  G  W  *  T  I  G  V  F  D  M  E  T  L  P  N  C  T  L  G  A  T  V  S  S  I  V  I  G  S  T  C  T  I  F  S  G  T  T  L  S  P  S  T  F  A  R  T  S  K  C  I  L  T  V  S  G  L  V  L  H  S  G  *  P  S  K  L  N  P  S  P  S  F  N  F  F  S  T  P  K  P  I  F  T  K  V  W  A  D  T  S  A  F  N  N  L  K  E  P  F  L  P  A  L  G  P  S  I  L  E  S  K  A  S  K  P  S  K  F  E  F  E  P  L  I  D  V  T  G  H  N  V  V  N  *  L  G  V  R  S  A  V  V  S  P  W  R  S  I  V  E  M  A  S  M  A  F  N  F  D  T  D  D  N  S  T  R  P  G  A  S  R  L  S  </first_frame>
            <second_frame>  C  *  I  P  K  R  S  G  I  Y  S  *  Y  F  F  D  E  F  V  E  L  G  L  F  V  P  D  V  C  N  S  Y  K  N  R  G  Q  K  K  R  A  I  L  S  I  Q  F  C  S  S  T  N  L  A  R  L  K  S  E  F  I  R  *  M  D  L  E  V  G  E  Q  L  E  S  L  T  W  R  H  C  P  T  A  H  W  V  P  L  C  P  R  *  L  S  D  Q  P  A  Q  F  S  L  A  Q  L  C  H  H  L  P  L  P  E  L  Q  N  A  S  L  L  F  Q  A  *  F  S  T  L  D  N  P  P  N  *  T  H  L  L  P  S  T  S  S  Q  L  Q  N  Q  S  S  Q  K  S  G  L  I  H  L  P  L  T  T  *  K  N  L  F  Y  L  L  *  D  P  V  Y  *  K  A  R  P  Q  N  Q  A  S  S  S  L  N  H  *  *  M  *  Q  A  T  M  *  *  I  D  W  V  *  E  V  Q  W  F  L  P  G  D  Q  *  W  R  W  R  P  W  L  S  I  L  I  L  M  T  T  Q  Q  D  Q  V  Q  A  V  *  A </second_frame>
            <third_frame>   V  E  Y  Q  K  D  L  A  Y  I  P  D  T  S  L  M  N  S  *  S  *  V  S  S  Y  L  M  Y  V  I  A  I  K  T  E  D  K  R  R  G  Q  F  Y  L  Y  S  F  A  Q  A  Q  I  L  P  V  *  R  V  S  L  *  G  E  W  I  W  R  L  V  N  N  W  S  L  *  H  G  D  I  A  Q  L  H  T  G  C  H  C  V  L  D  S  Y  R  I  N  L  H  N  F  L  W  H  N  F  V  T  I  Y  L  C  Q  N  F  K  M  H  P  Y  C  F  R  L  S  S  P  L  W  I  T  L  Q  I  E  P  I  S  F  L  Q  L  L  L  N  S  K  T  N  L  H  K  S  L  G  *  Y  I  C  L  *  Q  L  E  R  T  F  F  T  C  F  R  T  Q  Y  I  R  K  Q  G  L  K  T  K  Q  V  R  V  *  T  I  D  R  C  N  R  P  Q  C  S  E  L  I  G  C  K  K  C  S  G  F  S  L  E  I  N  S  G  D  G  V  H  G  F  Q  F  *  Y  *  *  Q  L  N  K  T  R  C  K  P  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139522" stop="139283"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGDIAQLHTGCHCVLDSYRINLHNFLWHNFVTIYLCQNFKMHPYCFRLSSPLWITLQIEPISFLQLLLNSKTNLHKSLG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139359" stop="139144"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSKLNPSPSFNFFSTPKPIFTKVWADTSAFNNLKEPFLPALGPSILESKASKPSKFEFEPLIDVTGHNVVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="142600" PGL_stop="139831"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="142600" e_stop="142411"/>
            <exon e_start="142274" e_stop="142059"/>
            <exon e_start="141618" e_stop="141304"/>
            <exon e_start="141025" e_stop="140936"/>
            <exon e_start="140834" e_stop="140751"/>
            <exon e_start="140630" e_stop="140595"/>
            <exon e_start="140500" e_stop="140411"/>
            <exon e_start="140261" e_stop="140167"/>
            <exon e_start="140090" e_stop="139831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="142600" e_stop="142411" e_length="190"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.972">
            <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
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            <gDNA_exon_coordinates>
              <exon start="142271" stop="142059"/>
              <exon start="141618" stop="141304"/>
              <exon start="141025" stop="140951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142271" stop="142059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142269" stop="142059"/>
              <exon start="141618" stop="141339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142269" stop="142059"/>
              <exon start="141618" stop="141383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142269" stop="142059"/>
              <exon start="141618" stop="141402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142233" stop="142059"/>
              <exon start="141618" stop="141309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294453" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142233" stop="142059"/>
              <exon start="141618" stop="141309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142218" stop="142059"/>
              <exon start="141618" stop="141589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142200" stop="142059"/>
              <exon start="141618" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142122" stop="142059"/>
              <exon start="141618" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141574" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141521" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141487" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141467" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141467" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141457" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="140039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141326" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141018" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141008" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295955" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141005" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140997" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140973" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140813" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277508" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140781" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140777" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140627" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268082" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140626" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140607" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140498" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140478" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140257" stop="140167"/>
              <exon start="140090" stop="139834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140251" stop="140167"/>
              <exon start="140090" stop="139883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140230" stop="140167"/>
              <exon start="140090" stop="139843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140208" stop="140167"/>
              <exon start="140090" stop="139831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140208" stop="140167"/>
              <exon start="140090" stop="139831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTCTCATTTTATCCATAAGAGCATTTTCCCCCTTTTTAAAAAAGAGTTGAAATAATATCATTACATCCTAATTAGAAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG : ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT : GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG : GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG : GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG : GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG : GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG : GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG : GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTAGTTTTGGTAAAAGAAAAAAAGAACCAATTCT</gDNA_template>
            <first_frame> L  F  S  F  Y  P  *  E  H  F  P  P  F  *  K  R  V  E  I  I  S  L  H  P  N  *  K  H  K  F  S  L  I  P  K  N  Q  E  D  A  A  I  R  C  R  S  S  P  T  N  S  Q  N  F  S  S  S  L  P  F  K  S  P   : D  G  R  W  V  Y  F  G  K  N  K  L  Q  S  K  R  W  S  S  W  I  Q  S  C  Y  T  G  C  C  W  R  N  W  A  A  T  C  N  V  D  E  D  E  S  F  S  L  S  S  S  S  L  *  C  C  *  C  S  W  C  Y  C  *  Y  *  P  H  G  H  W  C  C   : C  E  G  F  S  R  A  K  *  A  *  R  C  T  Y  R  N  G  P  C  D  H  T  C  W  Y  S  K  K  T  W  N  D  K  R  *  S  F  *  D  *  C  W  N  C  E  D  P  L  *  R  N  C  K  V  L  S  *  C  Y  C  Q  F  D  *  *  S  S  E  L  H  S  S  Y  C  S  *  S  F  Q  E  S  R  H  L  *  S  K  E  A  S  W  S  Y  L  T  *  C  C  E  S  *  H  F  C   : G  R  S  L  G  T  R  S  *  G  S  R  G  S  C  R  W  R  S  C  W  G  D  N  F  A  S  S  L  T   : G  Q  A  S  L  L  L  H  T  R  G  N  R  I  F  D  *  A  H  S  R  W  R  N  R  G  C  *   : G  K  K  R  G  W  I  C  N  S  I  Y   : G  I  C  S  C  K  I  C  R  C  L  S  Q  G  L  K  R  R  C  R  C  G  G  L  C  F  C  S  F  S   : G  H  R  T  P  F  L  C  L  Q  S  T  T  W  P  Y  W  S  *  R  S  L  S  T  W  S  P  K  *  V  *  E  :  D  W  T  G  E  G  Q  E  R  A  C  *  E  H  S  E  R  N  F  L  H  Q  E  L  E  L  S  F  K  F  S  N  T  F  S  D  C  L  V  N  I  I  N  E  M  F  V  C  *  V  Q  C  F  *  *  R  A  S  T  F  R  L  C  N  E  Y  Y  S  N  I  S  F  M  C  F  A  S  F  G  K  R  K  K  E  P  I   </first_frame>
            <second_frame>  Y  S  H  F  I  H  K  S  I  F  P  L  F  K  K  E  L  K  *  Y  H  Y  I  L  I  R  N  T  N  S  L  S  F  Q  R  I  R  K  M  Q  P  S  G  A  E  V  H  Q  R  I  A  R  I  S  A  H  L  Y  P  S  N  P  Q  :  M  G  D  G  S  I  L  E  R  T  N  C  R  A  K  G  G  A  A  G  F  K  V  A  I  L  G  A  A  G  G  I  G  Q  P  L  A  M  L  M  K  M  N  P  L  V  S  V  L  H  L  Y  D  V  V  N  A  P  G  V  T  A  D  I  S  H  M  D  T  G  A  V  :  V  R  G  F  L  G  Q  S  E  L  E  G  A  L  T  G  M  D  L  V  I  I  P  A  G  I  P  R  K  P  G  M  T  R  D  D  L  F  K  I  N  A  G  I  V  R  T  L  C  E  G  I  A  K  C  C  P  N  A  I  V  N  L  I  S  N  P  V  N  S  T  V  P  I  A  A  E  V  F  K  K  A  G  T  Y  D  P  K  K  L  L  G  V  T  S  L  D  V  V  R  A  N  T  F  V  :  A  E  V  L  G  L  D  P  R  E  V  E  V  P  V  V  G  G  H  A  G  V  T  I  L  P  L  L  S  Q  :  V  K  P  P  C  S  F  T  H  E  E  T  E  Y  L  T  K  R  I  Q  D  G  G  T  E  V  V  E  :  A  K  K  G  A  G  S  A  T  L  S  M  :  A  Y  A  A  V  K  F  A  D  V  C  L  K  G  L  R  G  D  A  G  V  V  A  C  A  F  V  A  S  Q  :  V  T  E  L  P  F  F  A  S  K  V  R  L  G  R  T  G  A  E  E  V  Y  Q  L  G  P  L  N  E  Y  E  R :   I  G  L  E  K  A  K  K  E  L  A  E  S  I  Q  K  G  I  S  F  I  R  N  *  N  *  V  S  N  S  V  I  P  F  L  I  V  W  *  I  L  *  M  K  C  L  S  V  K  Y  N  A  F  N  K  E  H  L  H  F  V  C  A  T  N  I  I  Q  I  *  A  S  C  A  L  L  V  L  V  K  E  K  K  N  Q  F  </second_frame>
            <third_frame>   I  L  I  L  S  I  R  A  F  S  P  F  L  K  K  S  *  N  N  I  I  T  S  *  L  E  T  Q  I  L  S  H  S  K  E  S  G  R  C  S  H  Q  V  Q  K  F  T  N  E  *  P  E  F  Q  L  I  F  T  L  Q  I  P  R :   W  E  M  G  L  F  W  K  E  Q  I  A  E  Q  K  V  E  Q  L  D  S  K  L  L  Y  W  V  L  L  E  E  L  G  S  H  L  Q  C  *  *  R  *  I  L  *  S  Q  F  F  I  S  M  M  L  L  M  L  L  V  L  L  L  I  L  A  T  W  T  L  V  L  L :   *  G  V  F  *  G  K  V  S  L  K  V  H  L  Q  E  W  T  L  *  S  Y  L  L  V  F  Q  E  N  L  E  *  Q  E  M  I  F  L  R  L  M  L  E  L  *  G  P  S  V  K  E  L  Q  S  A  V  L  M  L  L  S  I  *  L  V  I  Q  *  T  P  Q  F  L  L  Q  L  K  F  S  R  K  Q  A  L  M  I  Q  R  S  F  L  E  L  P  H  L  M  L  *  E  L  T  L  L  W :   Q  K  S  W  D  *  I  L  G  K  *  R  F  L  S  L  E  V  M  L  G  *  Q  F  C  L  F  S  H  R :   S  S  L  L  A  P  S  H  T  R  K  Q  N  I  *  L  S  A  F  K  M  E  E  Q  R  L  L  R :   Q  K  K  G  L  D  L  Q  L  Y  L  W :   H  M  Q  L  *  N  L  Q  M  F  V  S  R  A  *  E  E  M  P  V  W  W  L  V  L  L  *  L  L  R :   S  Q  N  S  L  S  L  P  P  K  Y  D  L  A  V  L  E  L  K  K  S  I  N  L  V  P  *  M  S  M  R   : G  L  D  W  R  R  P  R  K  S  L  L  R  A  F  R  K  E  F  P  S  S  G  I  R  I  E  F  Q  I  Q  *  Y  L  F  *  L  S  G  K  Y  Y  K  *  N  V  C  L  L  S  T  M  L  L  I  K  S  I  Y  I  S  S  V  Q  R  I  L  F  K  Y  K  L  H  V  L  C  *  F  W  *  K  K  K  R  T  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142542" stop="142411"/>
                    <exon start="142274" stop="142059"/>
                    <exon start="141618" stop="141304"/>
                    <exon start="141025" stop="140936"/>
                    <exon start="140834" stop="140751"/>
                    <exon start="140630" stop="140595"/>
                    <exon start="140500" stop="140411"/>
                    <exon start="140261" stop="140167"/>
                    <exon start="140090" stop="140018"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1128</number_coding_nucleotides>
                  <number_encoded_amino_acids>376</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YHYILIRNTNSLSFQRIRKMQPSGAEVHQRIARISAHLYPSNPQMGDGSILERTNCRAKGGAAGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQSELEGALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTSLDVVRANTFVAEVLGLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTHEETEYLTKRIQDGGTEVVEAKKGAGSATLSMAYAAVKFADVCLKGLRGDAGVVACAFVASQVTELPFFASKVRLGRTGAEEVYQLGPLNEYERIGLEKAKKELAESIQKGISFIRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="142600" e_stop="142411"/>
            <exon e_start="142274" e_stop="142059"/>
            <exon e_start="141618" e_stop="141088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="142600" e_stop="142411" e_length="190"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.972">
            <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="142274" e_stop="142059" e_length="216"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="142058" i_stop="141619" i_length="440"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="141618" e_stop="141088" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142600" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142592" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142538" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142529" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142522" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142522" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142517" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142517" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142516" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142516" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142516" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142516" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142516" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142516" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142516" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142516" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142514" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142512" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142509" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142499" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142499" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142496" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142495" stop="142411"/>
              <exon start="142274" stop="142072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142489" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142489" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142488" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142470" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142444" stop="142411"/>
              <exon start="142274" stop="142059"/>
              <exon start="141618" stop="141551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142271" stop="142059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142269" stop="142059"/>
              <exon start="141618" stop="141339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142269" stop="142059"/>
              <exon start="141618" stop="141383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142269" stop="142059"/>
              <exon start="141618" stop="141402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142233" stop="142059"/>
              <exon start="141618" stop="141309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294453" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142233" stop="142059"/>
              <exon start="141618" stop="141309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142218" stop="142059"/>
              <exon start="141618" stop="141589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292508" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTCTCATTTTATCCATAAGAGCATTTTCCCCCTTTTTAAAAAAGAGTTGAAATAATATCATTACATCCTAATTAGAAACACAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG : ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCTGCTGGAGGAATTGGGCAGCCACTTGCAATGTTGATGAAGATGAATCCTTTAGTCTCAGTTCTTCATCTCTATGATGTTGTTAATGCTCCTGGTGTTACTGCTGATATTAGCCACATGGACACTGGTGCTGTT : GTGAGGGGTTTTCTAGGGCAAAGTGAGCTTGAAGGTGCACTTACAGGAATGGACCTTGTGATCATACCTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTGGTAAGTGTTCCCAGTATACCACTTTTTATAAGATTGTTCTGTTCTCGTTTACCTTCATCAACTTTGCTTGATTTCGCTGTTTATTTCTTACATCCTCTATATCAGCTAACTGTAAATATCTAATCTTTCCCAAGAATCTTGGCTTTGTTTTTTGATCGATTTTCGTGGTTTTGAAATTTCATCTGACACTTCTGTCACTGATTTTGTGGCTCCATC</gDNA_template>
            <first_frame> L  F  S  F  Y  P  *  E  H  F  P  P  F  *  K  R  V  E  I  I  S  L  H  P  N  *  K  H  K  F  S  L  I  P  K  N  Q  E  D  A  A  I  R  C  R  S  S  P  T  N  S  Q  N  F  S  S  S  L  P  F  K  S  P   : D  G  R  W  V  Y  F  G  K  N  K  L  Q  S  K  R  W  S  S  W  I  Q  S  C  Y  T  G  C  C  W  R  N  W  A  A  T  C  N  V  D  E  D  E  S  F  S  L  S  S  S  S  L  *  C  C  *  C  S  W  C  Y  C  *  Y  *  P  H  G  H  W  C  C   : C  E  G  F  S  R  A  K  *  A  *  R  C  T  Y  R  N  G  P  C  D  H  T  C  W  Y  S  K  K  T  W  N  D  K  R  *  S  F  *  D  *  C  W  N  C  E  D  P  L  *  R  N  C  K  V  L  S  *  C  Y  C  Q  F  D  *  *  S  S  E  L  H  S  S  Y  C  S  *  S  F  Q  E  S  R  H  L  *  S  K  E  A  S  W  S  Y  L  T  *  C  C  E  S  *  H  F  C  G  K  C  S  Q  Y  T  T  F  Y  K  I  V  L  F  S  F  T  F  I  N  F  A  *  F  R  C  L  F  L  T  S  S  I  S  A  N  C  K  Y  L  I  F  P  K  N  L  G  F  V  F  *  S  I  F  V  V  L  K  F  H  L  T  L  L  S  L  I  L  W  L  H  </first_frame>
            <second_frame>  Y  S  H  F  I  H  K  S  I  F  P  L  F  K  K  E  L  K  *  Y  H  Y  I  L  I  R  N  T  N  S  L  S  F  Q  R  I  R  K  M  Q  P  S  G  A  E  V  H  Q  R  I  A  R  I  S  A  H  L  Y  P  S  N  P  Q  :  M  G  D  G  S  I  L  E  R  T  N  C  R  A  K  G  G  A  A  G  F  K  V  A  I  L  G  A  A  G  G  I  G  Q  P  L  A  M  L  M  K  M  N  P  L  V  S  V  L  H  L  Y  D  V  V  N  A  P  G  V  T  A  D  I  S  H  M  D  T  G  A  V  :  V  R  G  F  L  G  Q  S  E  L  E  G  A  L  T  G  M  D  L  V  I  I  P  A  G  I  P  R  K  P  G  M  T  R  D  D  L  F  K  I  N  A  G  I  V  R  T  L  C  E  G  I  A  K  C  C  P  N  A  I  V  N  L  I  S  N  P  V  N  S  T  V  P  I  A  A  E  V  F  K  K  A  G  T  Y  D  P  K  K  L  L  G  V  T  S  L  D  V  V  R  A  N  T  F  V  V  S  V  P  S  I  P  L  F  I  R  L  F  C  S  R  L  P  S  S  T  L  L  D  F  A  V  Y  F  L  H  P  L  Y  Q  L  T  V  N  I  *  S  F  P  R  I  L  A  L  F  F  D  R  F  S  W  F  *  N  F  I  *  H  F  C  H  *  F  C  G  S  I </second_frame>
            <third_frame>   I  L  I  L  S  I  R  A  F  S  P  F  L  K  K  S  *  N  N  I  I  T  S  *  L  E  T  Q  I  L  S  H  S  K  E  S  G  R  C  S  H  Q  V  Q  K  F  T  N  E  *  P  E  F  Q  L  I  F  T  L  Q  I  P  R :   W  E  M  G  L  F  W  K  E  Q  I  A  E  Q  K  V  E  Q  L  D  S  K  L  L  Y  W  V  L  L  E  E  L  G  S  H  L  Q  C  *  *  R  *  I  L  *  S  Q  F  F  I  S  M  M  L  L  M  L  L  V  L  L  L  I  L  A  T  W  T  L  V  L  L :   *  G  V  F  *  G  K  V  S  L  K  V  H  L  Q  E  W  T  L  *  S  Y  L  L  V  F  Q  E  N  L  E  *  Q  E  M  I  F  L  R  L  M  L  E  L  *  G  P  S  V  K  E  L  Q  S  A  V  L  M  L  L  S  I  *  L  V  I  Q  *  T  P  Q  F  L  L  Q  L  K  F  S  R  K  Q  A  L  M  I  Q  R  S  F  L  E  L  P  H  L  M  L  *  E  L  T  L  L  W  *  V  F  P  V  Y  H  F  L  *  D  C  S  V  L  V  Y  L  H  Q  L  C  L  I  S  L  F  I  S  Y  I  L  Y  I  S  *  L  *  I  S  N  L  S  Q  E  S  W  L  C  F  L  I  D  F  R  G  F  E  I  S  S  D  T  S  V  T  D  F  V  A  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142542" stop="142411"/>
                    <exon start="142274" stop="142059"/>
                    <exon start="141618" stop="141181"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YHYILIRNTNSLSFQRIRKMQPSGAEVHQRIARISAHLYPSNPQMGDGSILERTNCRAKGGAAGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQSELEGALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTSLDVVRANTFVVSVPSIPLFIRLFCSRLPSSTLLDFAVYFLHPLYQLTVNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="142517" e_stop="142411"/>
            <exon e_start="142274" e_stop="142193"/>
            <exon e_start="141551" e_stop="141304"/>
            <exon e_start="141025" e_stop="140936"/>
            <exon e_start="140834" e_stop="140751"/>
            <exon e_start="140630" e_stop="140595"/>
            <exon e_start="140500" e_stop="140411"/>
            <exon e_start="140261" e_stop="140167"/>
            <exon e_start="140090" e_stop="139831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="142517" e_stop="142411" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.972">
            <gDNA_intron_boundary i_start="142410" i_stop="142275" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="142274" e_stop="142193" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="142192" i_stop="141552" i_length="641"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="141551" e_stop="141304" e_length="248"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="141025" e_stop="140936" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.916" acc_prob="0.993">
            <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="140834" e_stop="140751" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.727" acc_prob="0.968">
            <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="140630" e_stop="140595" e_length="36"/>
          </exon>
          <intron i_serial="6" don_prob="0.970" acc_prob="0.973">
            <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="140500" e_stop="140411" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.940" acc_prob="0.986">
            <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="140261" e_stop="140167" e_length="95"/>
          </exon>
          <intron i_serial="8" don_prob="0.980" acc_prob="0.973">
            <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="0.969">
            <gDNA_exon_boundary e_start="140090" e_stop="139831" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142517" stop="142411"/>
              <exon start="142274" stop="142193"/>
              <exon start="141551" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142516" stop="142411"/>
              <exon start="142274" stop="142193"/>
              <exon start="141551" stop="141441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141521" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141487" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141467" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141467" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141457" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="140039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141326" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141018" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141008" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295955" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141005" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140997" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140973" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140813" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277508" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140781" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140777" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140627" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268082" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140626" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140607" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140498" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140478" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140257" stop="140167"/>
              <exon start="140090" stop="139834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140251" stop="140167"/>
              <exon start="140090" stop="139883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140230" stop="140167"/>
              <exon start="140090" stop="139843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140208" stop="140167"/>
              <exon start="140090" stop="139831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140208" stop="140167"/>
              <exon start="140090" stop="139831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATTCTCTCTCATTCCAAAGAATCAGGAAGATGCAGCCATCAGGTGCAGAAGTTCACCAACGAATAGCCAGAATTTCAGCTCATCTTTACCCTTCAAATCCCCAG : ATGGGAGATGGGTCTATTTTGGAAAGAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTG : CTGCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG : GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG : GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG : GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG : GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG : GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG : GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTAGTTTTGGTAAAAGAAAAAAAGAACCAATTCT</gDNA_template>
            <first_frame> Q  I  L  S  H  S  K  E  S  G  R  C  S  H  Q  V  Q  K  F  T  N  E  *  P  E  F  Q  L  I  F  T  L  Q  I  P  R :   W  E  M  G  L  F  W  K  E  Q  I  A  E  Q  K  V  E  Q  L  D  S  K  L  L  Y  W  V  :  L  L  V  F  Q  E  N  L  E  *  Q  E  M  I  F  L  R  L  M  L  E  L  *  G  P  S  V  K  E  L  Q  S  A  V  L  M  L  L  S  I  *  L  V  I  Q  *  T  P  Q  F  L  L  Q  L  K  F  S  R  K  Q  A  L  M  I  Q  R  S  F  L  E  L  P  H  L  M  L  *  E  L  T  L  L  W :   Q  K  S  W  D  *  I  L  G  K  *  R  F  L  S  L  E  V  M  L  G  *  Q  F  C  L  F  S  H  R :   S  S  L  L  A  P  S  H  T  R  K  Q  N  I  *  L  S  A  F  K  M  E  E  Q  R  L  L  R :   Q  K  K  G  L  D  L  Q  L  Y  L  W :   H  M  Q  L  *  N  L  Q  M  F  V  S  R  A  *  E  E  M  P  V  W  W  L  V  L  L  *  L  L  R :   S  Q  N  S  L  S  L  P  P  K  Y  D  L  A  V  L  E  L  K  K  S  I  N  L  V  P  *  M  S  M  R   : G  L  D  W  R  R  P  R  K  S  L  L  R  A  F  R  K  E  F  P  S  S  G  I  R  I  E  F  Q  I  Q  *  Y  L  F  *  L  S  G  K  Y  Y  K  *  N  V  C  L  L  S  T  M  L  L  I  K  S  I  Y  I  S  S  V  Q  R  I  L  F  K  Y  K  L  H  V  L  C  *  F  W  *  K  K  K  R  T  N  S </first_frame>
            <second_frame>  K  F  S  L  I  P  K  N  Q  E  D  A  A  I  R  C  R  S  S  P  T  N  S  Q  N  F  S  S  S  L  P  F  K  S  P   : D  G  R  W  V  Y  F  G  K  N  K  L  Q  S  K  R  W  S  S  W  I  Q  S  C  Y  T  G  C :   C  W  Y  S  K  K  T  W  N  D  K  R  *  S  F  *  D  *  C  W  N  C  E  D  P  L  *  R  N  C  K  V  L  S  *  C  Y  C  Q  F  D  *  *  S  S  E  L  H  S  S  Y  C  S  *  S  F  Q  E  S  R  H  L  *  S  K  E  A  S  W  S  Y  L  T  *  C  C  E  S  *  H  F  C   : G  R  S  L  G  T  R  S  *  G  S  R  G  S  C  R  W  R  S  C  W  G  D  N  F  A  S  S  L  T   : G  Q  A  S  L  L  L  H  T  R  G  N  R  I  F  D  *  A  H  S  R  W  R  N  R  G  C  *   : G  K  K  R  G  W  I  C  N  S  I  Y   : G  I  C  S  C  K  I  C  R  C  L  S  Q  G  L  K  R  R  C  R  C  G  G  L  C  F  C  S  F  S   : G  H  R  T  P  F  L  C  L  Q  S  T  T  W  P  Y  W  S  *  R  S  L  S  T  W  S  P  K  *  V  *  E  :  D  W  T  G  E  G  Q  E  R  A  C  *  E  H  S  E  R  N  F  L  H  Q  E  L  E  L  S  F  K  F  S  N  T  F  S  D  C  L  V  N  I  I  N  E  M  F  V  C  *  V  Q  C  F  *  *  R  A  S  T  F  R  L  C  N  E  Y  Y  S  N  I  S  F  M  C  F  A  S  F  G  K  R  K  K  E  P  I   </second_frame>
            <third_frame>   N  S  L  S  F  Q  R  I  R  K  M  Q  P  S  G  A  E  V  H  Q  R  I  A  R  I  S  A  H  L  Y  P  S  N  P  Q  :  M  G  D  G  S  I  L  E  R  T  N  C  R  A  K  G  G  A  A  G  F  K  V  A  I  L  G   : A  A  G  I  P  R  K  P  G  M  T  R  D  D  L  F  K  I  N  A  G  I  V  R  T  L  C  E  G  I  A  K  C  C  P  N  A  I  V  N  L  I  S  N  P  V  N  S  T  V  P  I  A  A  E  V  F  K  K  A  G  T  Y  D  P  K  K  L  L  G  V  T  S  L  D  V  V  R  A  N  T  F  V  :  A  E  V  L  G  L  D  P  R  E  V  E  V  P  V  V  G  G  H  A  G  V  T  I  L  P  L  L  S  Q  :  V  K  P  P  C  S  F  T  H  E  E  T  E  Y  L  T  K  R  I  Q  D  G  G  T  E  V  V  E  :  A  K  K  G  A  G  S  A  T  L  S  M  :  A  Y  A  A  V  K  F  A  D  V  C  L  K  G  L  R  G  D  A  G  V  V  A  C  A  F  V  A  S  Q  :  V  T  E  L  P  F  F  A  S  K  V  R  L  G  R  T  G  A  E  E  V  Y  Q  L  G  P  L  N  E  Y  E  R :   I  G  L  E  K  A  K  K  E  L  A  E  S  I  Q  K  G  I  S  F  I  R  N  *  N  *  V  S  N  S  V  I  P  F  L  I  V  W  *  I  L  *  M  K  C  L  S  V  K  Y  N  A  F  N  K  E  H  L  H  F  V  C  A  T  N  I  I  Q  I  *  A  S  C  A  L  L  V  L  V  K  E  K  K  N  Q  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142515" stop="142411"/>
                    <exon start="142274" stop="142193"/>
                    <exon start="141551" stop="141304"/>
                    <exon start="141025" stop="140936"/>
                    <exon start="140834" stop="140751"/>
                    <exon start="140630" stop="140595"/>
                    <exon start="140500" stop="140411"/>
                    <exon start="140261" stop="140167"/>
                    <exon start="140090" stop="140018"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLSFQRIRKMQPSGAEVHQRIARISAHLYPSNPQMGDGSILERTNCRAKGGAAGFKVAILGAAGIPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTSLDVVRANTFVAEVLGLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTHEETEYLTKRIQDGGTEVVEAKKGAGSATLSMAYAAVKFADVCLKGLRGDAGVVACAFVASQVTELPFFASKVRLGRTGAEEVYQLGPLNEYERIGLEKAKKELAESIQKGISFIRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="142249" e_stop="142191"/>
            <exon e_start="141549" e_stop="141304"/>
            <exon e_start="141025" e_stop="140936"/>
            <exon e_start="140834" e_stop="140751"/>
            <exon e_start="140630" e_stop="140595"/>
            <exon e_start="140500" e_stop="140411"/>
            <exon e_start="140261" e_stop="140167"/>
            <exon e_start="140090" e_stop="139831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.996"/>
          <exon-intron don_prob="0.916" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="142249" e_stop="142191" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="142190" i_stop="141550" i_length="641"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="141549" e_stop="141304" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="141303" i_stop="141026" i_length="278"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="141025" e_stop="140936" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.916" acc_prob="0.993">
            <gDNA_intron_boundary i_start="140935" i_stop="140835" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="140834" e_stop="140751" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.727" acc_prob="0.968">
            <gDNA_intron_boundary i_start="140750" i_stop="140631" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="140630" e_stop="140595" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.973">
            <gDNA_intron_boundary i_start="140594" i_stop="140501" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="140500" e_stop="140411" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.940" acc_prob="0.986">
            <gDNA_intron_boundary i_start="140410" i_stop="140262" i_length="149"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="140261" e_stop="140167" e_length="95"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="0.973">
            <gDNA_intron_boundary i_start="140166" i_stop="140091" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="0.969">
            <gDNA_exon_boundary e_start="140090" e_stop="139831" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142249" stop="142191"/>
              <exon start="141549" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141521" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141487" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141467" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141467" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141457" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="140039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141326" stop="141304"/>
              <exon start="141025" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141018" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141008" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295955" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141005" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140997" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140973" stop="140936"/>
              <exon start="140834" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140813" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277508" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140781" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140777" stop="140751"/>
              <exon start="140630" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140627" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268082" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140626" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140607" stop="140595"/>
              <exon start="140500" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140498" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140478" stop="140411"/>
              <exon start="140261" stop="140167"/>
              <exon start="140090" stop="139906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140257" stop="140167"/>
              <exon start="140090" stop="139834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140251" stop="140167"/>
              <exon start="140090" stop="139883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140230" stop="140167"/>
              <exon start="140090" stop="139843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140208" stop="140167"/>
              <exon start="140090" stop="139831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140208" stop="140167"/>
              <exon start="140090" stop="139831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACAAATTGCAGAGCAAAAGGTGGAGCAGCTGGATTCAAAGTTGCTATACTGGGTGCT : GCTGGTATTCCAAGAAAACCTGGAATGACAAGAGATGATCTTTTTAAGATTAATGCTGGAATTGTGAGGACCCTCTGTGAAGGAATTGCAAAGTGCTGTCCTAATGCTATTGTCAATTTGATTAGTAATCCAGTGAACTCCACAGTTCCTATTGCAGCTGAAGTTTTCAAGAAAGCAGGCACTTATGATCCAAAGAAGCTTCTTGGAGTTACCTCACTTGATGTTGTGAGAGCTAACACTTTTGTG : GCAGAAGTCTTGGGACTAGATCCTAGGGAAGTAGAGGTTCCTGTCGTTGGAGGTCATGCTGGGGTGACAATTTTGCCTCTTCTCTCACAG : GTCAAGCCTCCTTGCTCCTTCACACACGAGGAAACAGAATATTTGACTAAGCGCATTCAAGATGGAGGAACAGAGGTTGTTGAG : GCAAAAAAAGGGGCTGGATCTGCAACTCTATCTATG : GCATATGCAGCTGTAAAATTTGCAGATGTTTGTCTCAAGGGCTTAAGAGGAGATGCCGGTGTGGTGGCTTGTGCTTTTGTAGCTTCTCAG : GTCACAGAACTCCCTTTCTTTGCCTCCAAAGTACGACTTGGCCGTACTGGAGCTGAAGAAGTCTATCAACTTGGTCCCCTAAATGAGTATGAGAG : GATTGGACTGGAGAAGGCCAAGAAAGAGCTTGCTGAGAGCATTCAGAAAGGAATTTCCTTCATCAGGAATTAGAATTGAGTTTCAAATTCAGTAATACCTTTTCTGATTGTCTGGTAAATATTATAAATGAAATGTTTGTCTGTTAAGTACAATGCTTTTAATAAAGAGCATCTACATTTCGTCTGTGCAACGAATATTATTCAAATATAAGCTTCATGTGCTTTGCTAGTTTTGGTAAAAGAAAAAAAGAACCAATTCT</gDNA_template>
            <first_frame> E  Q  I  A  E  Q  K  V  E  Q  L  D  S  K  L  L  Y  W  V  L :   L  V  F  Q  E  N  L  E  *  Q  E  M  I  F  L  R  L  M  L  E  L  *  G  P  S  V  K  E  L  Q  S  A  V  L  M  L  L  S  I  *  L  V  I  Q  *  T  P  Q  F  L  L  Q  L  K  F  S  R  K  Q  A  L  M  I  Q  R  S  F  L  E  L  P  H  L  M  L  *  E  L  T  L  L  W :   Q  K  S  W  D  *  I  L  G  K  *  R  F  L  S  L  E  V  M  L  G  *  Q  F  C  L  F  S  H  R :   S  S  L  L  A  P  S  H  T  R  K  Q  N  I  *  L  S  A  F  K  M  E  E  Q  R  L  L  R :   Q  K  K  G  L  D  L  Q  L  Y  L  W :   H  M  Q  L  *  N  L  Q  M  F  V  S  R  A  *  E  E  M  P  V  W  W  L  V  L  L  *  L  L  R :   S  Q  N  S  L  S  L  P  P  K  Y  D  L  A  V  L  E  L  K  K  S  I  N  L  V  P  *  M  S  M  R   : G  L  D  W  R  R  P  R  K  S  L  L  R  A  F  R  K  E  F  P  S  S  G  I  R  I  E  F  Q  I  Q  *  Y  L  F  *  L  S  G  K  Y  Y  K  *  N  V  C  L  L  S  T  M  L  L  I  K  S  I  Y  I  S  S  V  Q  R  I  L  F  K  Y  K  L  H  V  L  C  *  F  W  *  K  K  K  R  T  N  S </first_frame>
            <second_frame>  N  K  L  Q  S  K  R  W  S  S  W  I  Q  S  C  Y  T  G  C   : C  W  Y  S  K  K  T  W  N  D  K  R  *  S  F  *  D  *  C  W  N  C  E  D  P  L  *  R  N  C  K  V  L  S  *  C  Y  C  Q  F  D  *  *  S  S  E  L  H  S  S  Y  C  S  *  S  F  Q  E  S  R  H  L  *  S  K  E  A  S  W  S  Y  L  T  *  C  C  E  S  *  H  F  C   : G  R  S  L  G  T  R  S  *  G  S  R  G  S  C  R  W  R  S  C  W  G  D  N  F  A  S  S  L  T   : G  Q  A  S  L  L  L  H  T  R  G  N  R  I  F  D  *  A  H  S  R  W  R  N  R  G  C  *   : G  K  K  R  G  W  I  C  N  S  I  Y   : G  I  C  S  C  K  I  C  R  C  L  S  Q  G  L  K  R  R  C  R  C  G  G  L  C  F  C  S  F  S   : G  H  R  T  P  F  L  C  L  Q  S  T  T  W  P  Y  W  S  *  R  S  L  S  T  W  S  P  K  *  V  *  E  :  D  W  T  G  E  G  Q  E  R  A  C  *  E  H  S  E  R  N  F  L  H  Q  E  L  E  L  S  F  K  F  S  N  T  F  S  D  C  L  V  N  I  I  N  E  M  F  V  C  *  V  Q  C  F  *  *  R  A  S  T  F  R  L  C  N  E  Y  Y  S  N  I  S  F  M  C  F  A  S  F  G  K  R  K  K  E  P  I   </second_frame>
            <third_frame>   T  N  C  R  A  K  G  G  A  A  G  F  K  V  A  I  L  G  A  :  A  G  I  P  R  K  P  G  M  T  R  D  D  L  F  K  I  N  A  G  I  V  R  T  L  C  E  G  I  A  K  C  C  P  N  A  I  V  N  L  I  S  N  P  V  N  S  T  V  P  I  A  A  E  V  F  K  K  A  G  T  Y  D  P  K  K  L  L  G  V  T  S  L  D  V  V  R  A  N  T  F  V  :  A  E  V  L  G  L  D  P  R  E  V  E  V  P  V  V  G  G  H  A  G  V  T  I  L  P  L  L  S  Q  :  V  K  P  P  C  S  F  T  H  E  E  T  E  Y  L  T  K  R  I  Q  D  G  G  T  E  V  V  E  :  A  K  K  G  A  G  S  A  T  L  S  M  :  A  Y  A  A  V  K  F  A  D  V  C  L  K  G  L  R  G  D  A  G  V  V  A  C  A  F  V  A  S  Q  :  V  T  E  L  P  F  F  A  S  K  V  R  L  G  R  T  G  A  E  E  V  Y  Q  L  G  P  L  N  E  Y  E  R :   I  G  L  E  K  A  K  K  E  L  A  E  S  I  Q  K  G  I  S  F  I  R  N  *  N  *  V  S  N  S  V  I  P  F  L  I  V  W  *  I  L  *  M  K  C  L  S  V  K  Y  N  A  F  N  K  E  H  L  H  F  V  C  A  T  N  I  I  Q  I  *  A  S  C  A  L  L  V  L  V  K  E  K  K  N  Q  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142247" stop="142191"/>
                    <exon start="141549" stop="141304"/>
                    <exon start="141025" stop="140936"/>
                    <exon start="140834" stop="140751"/>
                    <exon start="140630" stop="140595"/>
                    <exon start="140500" stop="140411"/>
                    <exon start="140261" stop="140167"/>
                    <exon start="140090" stop="140018"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNCRAKGGAAGFKVAILGAAGIPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTSLDVVRANTFVAEVLGLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTHEETEYLTKRIQDGGTEVVEAKKGAGSATLSMAYAAVKFADVCLKGLRGDAGVVACAFVASQVTELPFFASKVRLGRTGAEEVYQLGPLNEYERIGLEKAKKELAESIQKGISFIRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="139903" PGL_stop="140081"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139903" e_stop="140081"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="139903" e_stop="140081" e_length="179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139903" stop="140081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAGACGAAATGTAGATGCTCTTTATTAAAAGCATTGTACTTAACAGACAAACATTTCATTTATAATATTTACCAGACAATCAGAAAAGGTATTACTGAATTTGAAACTCAATTCTAATTCCTGATGAAGGAAATTCCTTTCTGAATGCTCTCAGCAAGCTCTTTCTTGGCCTTCTCC</gDNA_template>
            <first_frame> H  R  R  N  V  D  A  L  Y  *  K  H  C  T  *  Q  T  N  I  S  F  I  I  F  T  R  Q  S  E  K  V  L  L  N  L  K  L  N  S  N  S  *  *  R  K  F  L  S  E  C  S  Q  Q  A  L  S  W  P  S   </first_frame>
            <second_frame>  T  D  E  M  *  M  L  F  I  K  S  I  V  L  N  R  Q  T  F  H  L  *  Y  L  P  D  N  Q  K  R  Y  Y  *  I  *  N  S  I  L  I  P  D  E  G  N  S  F  L  N  A  L  S  K  L  F  L  G  L  L  </second_frame>
            <third_frame>   Q  T  K  C  R  C  S  L  L  K  A  L  Y  L  T  D  K  H  F  I  Y  N  I  Y  Q  T  I  R  K  G  I  T  E  F  E  T  Q  F  *  F  L  M  K  E  I  P  F  *  M  L  S  A  S  S  F  L  A  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0071F18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="148914" PGL_stop="149525"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="148914" e_stop="149525"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="148914" e_stop="149525" e_length="612"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="148914" stop="149525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211955" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTATGTTCCCATAGACTAAACCAAACGTCAAATACAGACAATACCAAACTTTCTTCTCTATTTCTCTTACTAGCCAAAAAAAAAAAATGTCAGCCAGTGACAACTTTTTCCGGCCATTCCCAGTTTTATTGCTCTGTTTTTTAGTTTTCTTGATTTCTCCTTCTCATCAACAAGATGAGTTACTACTCATGCAATTCAAATCCACTCTGAAAACAATACAAAGTTCAGAGCTTTTTGACACGTGGACACCTCAGAATAACATTTGCAACTTCACTGGAATTTTCTGTGATTCTGACAGTAAATTGGTTAAAGAAATCAATCTTTCTGAACAGAATCTATCTGGGGTTGTCTCTTTTGATTCATTATGTTCTCTGAAATCCCTACAAAAGATATCTCTTGGTACTAATTACTTGTACGGTAGAGTCAGTGACCATTTGAAAAACTGTACAAACTTGCAGTATTTGGATTTGGGTAGCAATTCTTTTTCAGGGGAAGTTCCAAATTTGTCTTCTTTAAGCCAATTGGAGTTTTTGAATCTCAATAGGAGTGGATTCTCTGGTTCATTTCCTTGGAGTTCACTAGCAAATCTTACTAATCTAACTTTCTTGA</gDNA_template>
            <first_frame> I  L  C  S  H  R  L  N  Q  T  S  N  T  D  N  T  K  L  S  S  L  F  L  L  L  A  K  K  K  K  C  Q  P  V  T  T  F  S  G  H  S  Q  F  Y  C  S  V  F  *  F  S  *  F  L  L  L  I  N  K  M  S  Y  Y  S  C  N  S  N  P  L  *  K  Q  Y  K  V  Q  S  F  L  T  R  G  H  L  R  I  T  F  A  T  S  L  E  F  S  V  I  L  T  V  N  W  L  K  K  S  I  F  L  N  R  I  Y  L  G  L  S  L  L  I  H  Y  V  L  *  N  P  Y  K  R  Y  L  L  V  L  I  T  C  T  V  E  S  V  T  I  *  K  T  V  Q  T  C  S  I  W  I  W  V  A  I  L  F  Q  G  K  F  Q  I  C  L  L  *  A  N  W  S  F  *  I  S  I  G  V  D  S  L  V  H  F  L  G  V  H  *  Q  I  L  L  I  *  L  S  * </first_frame>
            <second_frame>  Y  Y  V  P  I  D  *  T  K  R  Q  I  Q  T  I  P  N  F  L  L  Y  F  S  Y  *  P  K  K  K  N  V  S  Q  *  Q  L  F  P  A  I  P  S  F  I  A  L  F  F  S  F  L  D  F  S  F  S  S  T  R  *  V  T  T  H  A  I  Q  I  H  S  E  N  N  T  K  F  R  A  F  *  H  V  D  T  S  E  *  H  L  Q  L  H  W  N  F  L  *  F  *  Q  *  I  G  *  R  N  Q  S  F  *  T  E  S  I  W  G  C  L  F  *  F  I  M  F  S  E  I  P  T  K  D  I  S  W  Y  *  L  L  V  R  *  S  Q  *  P  F  E  K  L  Y  K  L  A  V  F  G  F  G  *  Q  F  F  F  R  G  S  S  K  F  V  F  F  K  P  I  G  V  F  E  S  Q  *  E  W  I  L  W  F  I  S  L  E  F  T  S  K  S  Y  *  S  N  F  L   </second_frame>
            <third_frame>   I  M  F  P  *  T  K  P  N  V  K  Y  R  Q  Y  Q  T  F  F  S  I  S  L  T  S  Q  K  K  K  M  S  A  S  D  N  F  F  R  P  F  P  V  L  L  L  C  F  L  V  F  L  I  S  P  S  H  Q  Q  D  E  L  L  L  M  Q  F  K  S  T  L  K  T  I  Q  S  S  E  L  F  D  T  W  T  P  Q  N  N  I  C  N  F  T  G  I  F  C  D  S  D  S  K  L  V  K  E  I  N  L  S  E  Q  N  L  S  G  V  V  S  F  D  S  L  C  S  L  K  S  L  Q  K  I  S  L  G  T  N  Y  L  Y  G  R  V  S  D  H  L  K  N  C  T  N  L  Q  Y  L  D  L  G  S  N  S  F  S  G  E  V  P  N  L  S  S  L  S  Q  L  E  F  L  N  L  N  R  S  G  F  S  G  S  F  P  W  S  S  L  A  N  L  T  N  L  T  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="148931" stop="149524"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKPNVKYRQYQTFFSISLTSQKKKMSASDNFFRPFPVLLLCFLVFLISPSHQQDELLLMQFKSTLKTIQSSELFDTWTPQNNICNFTGIFCDSDSKLVKEINLSEQNLSGVVSFDSLCSLKSLQKISLGTNYLYGRVSDHLKNCTNLQYLDLGSNSFSGEVPNLSSLSQLEFLNLNRSGFSGSFPWSSLANLTNLTFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="150002" PGL_stop="150330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="150002" e_stop="150330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="150002" e_stop="150330" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150002" stop="150330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATGGGCAGAACTTCAGTACATTGATGTTTCTGAGAATATGTTTACTGGTTCGATACCGCCTGATATGTGCAAGAAAGGGAGTATGACTGATCTTTTGCTTCTCCAGAACAACTTCACTGGTGGGATACCTTCGAACTATGCTAATTGTTTGTCGTTGCAGCGTTTAAGGGTTAGCAACAATTCACTTTCAGGAGTAGTCCCTAGTGGAATTTGGAGTTTGCCAGATTTGGAAATCATTGATCTCACATTGAATCTATTTGAAGGCCCAGTGACATCAAATATCGGTGAGGCAAAGTCTTTAGCACAGTTGTTTCTAGCCTACAACCA</gDNA_template>
            <first_frame> S  W  A  E  L  Q  Y  I  D  V  S  E  N  M  F  T  G  S  I  P  P  D  M  C  K  K  G  S  M  T  D  L  L  L  L  Q  N  N  F  T  G  G  I  P  S  N  Y  A  N  C  L  S  L  Q  R  L  R  V  S  N  N  S  L  S  G  V  V  P  S  G  I  W  S  L  P  D  L  E  I  I  D  L  T  L  N  L  F  E  G  P  V  T  S  N  I  G  E  A  K  S  L  A  Q  L  F  L  A  Y  N   </first_frame>
            <second_frame>  H  G  Q  N  F  S  T  L  M  F  L  R  I  C  L  L  V  R  Y  R  L  I  C  A  R  K  G  V  *  L  I  F  C  F  S  R  T  T  S  L  V  G  Y  L  R  T  M  L  I  V  C  R  C  S  V  *  G  L  A  T  I  H  F  Q  E  *  S  L  V  E  F  G  V  C  Q  I  W  K  S  L  I  S  H  *  I  Y  L  K  A  Q  *  H  Q  I  S  V  R  Q  S  L  *  H  S  C  F  *  P  T  T  </second_frame>
            <third_frame>   M  G  R  T  S  V  H  *  C  F  *  E  Y  V  Y  W  F  D  T  A  *  Y  V  Q  E  R  E  Y  D  *  S  F  A  S  P  E  Q  L  H  W  W  D  T  F  E  L  C  *  L  F  V  V  A  A  F  K  G  *  Q  Q  F  T  F  R  S  S  P  *  W  N  L  E  F  A  R  F  G  N  H  *  S  H  I  E  S  I  *  R  P  S  D  I  K  Y  R  *  G  K  V  F  S  T  V  V  S  S  L  Q  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150002" stop="150328"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWAELQYIDVSENMFTGSIPPDMCKKGSMTDLLLLQNNFTGGIPSNYANCLSLQRLRVSNNSLSGVVPSGIWSLPDLEIIDLTLNLFEGPVTSNIGEAKSLAQLFLAYN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="151233" PGL_stop="152245"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="151233" e_stop="151565"/>
            <exon e_start="151664" e_stop="152245"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="151233" e_stop="151565" e_length="333"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="151566" i_stop="151663" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="151664" e_stop="152245" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151233" stop="151565"/>
              <exon start="151664" stop="152024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151233" stop="151565"/>
              <exon start="151664" stop="151853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151233" stop="151565"/>
              <exon start="151664" stop="151849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151233" stop="151565"/>
              <exon start="151664" stop="151767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151233" stop="151500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151368" stop="151565"/>
              <exon start="151664" stop="152070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151390" stop="151565"/>
              <exon start="151664" stop="152186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151783" stop="152245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGTAGCATCACAAGTGAGGACTCAAATATGCTGGTTTATGAATACTTAACTAATGGAAGCTTATGGGACCGATTGCACACGTCTCAGAAAGTCAAGATGGATTGGTTGGTGAGATATGACATTGCATTAGGTGCTGCTCAAGGGCTTGAGTATCTGCATCACGGATATGACAGACCCGTGATGCATCGGGATGTCAAGTCTAGCAACATCTTGTTGGATGAACAGATGAAGCCCAAAATTGCTGATTTTGGACTAGCCAAAGTTTTGCATGTTAATGGTACTAAGGACTCTTCTCAGGTTGTAGCTGGGACGCATGGCTACATTGCTCCTG : AGTATGCTTACACAACCAAGGTGACCGAGAAGAGTGATGTCTATAGCTTCGGGGTGGTGCTAATGGAATTGGTGACTGGAAAGAAGCCAGTGGAGGCAGAATACGGGGAGAACATTGACATAGTCCAATGGGTTTGTAGCAAGATAAGAAACAATACTAGCATGATCGATTTGGTGGATTCAAGCATTTTCGAGGGGTTCAAAGAAGATGCAGTTGAGGTTCTTAAAATTGCAGTTCATTGCACATCAAGGACGCCAGCATTAAGACCTTCCATGAGGATGGTAGTTCATATGCTGGAAGAAGCCGAGCCTTGCAAGCTGACAGATGTAGTCGTGAATTCACCAAATGAGGATGGCAGGAAACAAGGACTTGCTAACTAATGGCAAGTCATGATGTTGAACTATATCTCGTTTTTGCAGAATATTGAATTATGTTGTAAGTTCACAAAGAATGCTTAGTGTACATATGACACTTTTGAAGAAATAGTGTATTTCACAGCTGCATTAATAAATCCAGCTAGCAAGTAATGTATTTCACATCCAAATTACTAATAGAAACTGAGCAGTTGATCTACCCTACAAC</gDNA_template>
            <first_frame> T  V  A  S  Q  V  R  T  Q  I  C  W  F  M  N  T  *  L  M  E  A  Y  G  T  D  C  T  R  L  R  K  S  R  W  I  G  W  *  D  M  T  L  H  *  V  L  L  K  G  L  S  I  C  I  T  D  M  T  D  P  *  C  I  G  M  S  S  L  A  T  S  C  W  M  N  R  *  S  P  K  L  L  I  L  D  *  P  K  F  C  M  L  M  V  L  R  T  L  L  R  L  *  L  G  R  M  A  T  L  L  L  :  S  M  L  T  Q  P  R  *  P  R  R  V  M  S  I  A  S  G  W  C  *  W  N  W  *  L  E  R  S  Q  W  R  Q  N  T  G  R  T  L  T  *  S  N  G  F  V  A  R  *  E  T  I  L  A  *  S  I  W  W  I  Q  A  F  S  R  G  S  K  K  M  Q  L  R  F  L  K  L  Q  F  I  A  H  Q  G  R  Q  H  *  D  L  P  *  G  W  *  F  I  C  W  K  K  P  S  L  A  S  *  Q  M  *  S  *  I  H  Q  M  R  M  A  G  N  K  D  L  L  T  N  G  K  S  *  C  *  T  I  S  R  F  C  R  I  L  N  Y  V  V  S  S  Q  R  M  L  S  V  H  M  T  L  L  K  K  *  C  I  S  Q  L  H  *  *  I  Q  L  A  S  N  V  F  H  I  Q  I  T  N  R  N  *  A  V  D  L  P  Y  N </first_frame>
            <second_frame>  L  *  H  H  K  *  G  L  K  Y  A  G  L  *  I  L  N  *  W  K  L  M  G  P  I  A  H  V  S  E  S  Q  D  G  L  V  G  E  I  *  H  C  I  R  C  C  S  R  A  *  V  S  A  S  R  I  *  Q  T  R  D  A  S  G  C  Q  V  *  Q  H  L  V  G  *  T  D  E  A  Q  N  C  *  F  W  T  S  Q  S  F  A  C  *  W  Y  *  G  L  F  S  G  C  S  W  D  A  W  L  H  C  S  * :   V  C  L  H  N  Q  G  D  R  E  E  *  C  L  *  L  R  G  G  A  N  G  I  G  D  W  K  E  A  S  G  G  R  I  R  G  E  H  *  H  S  P  M  G  L  *  Q  D  K  K  Q  Y  *  H  D  R  F  G  G  F  K  H  F  R  G  V  Q  R  R  C  S  *  G  S  *  N  C  S  S  L  H  I  K  D  A  S  I  K  T  F  H  E  D  G  S  S  Y  A  G  R  S  R  A  L  Q  A  D  R  C  S  R  E  F  T  K  *  G  W  Q  E  T  R  T  C  *  L  M  A  S  H  D  V  E  L  Y  L  V  F  A  E  Y  *  I  M  L  *  V  H  K  E  C  L  V  Y  I  *  H  F  *  R  N  S  V  F  H  S  C  I  N  K  S  S  *  Q  V  M  Y  F  T  S  K  L  L  I  E  T  E  Q  L  I  Y  P  T   </second_frame>
            <third_frame>   C  S  I  T  S  E  D  S  N  M  L  V  Y  E  Y  L  T  N  G  S  L  W  D  R  L  H  T  S  Q  K  V  K  M  D  W  L  V  R  Y  D  I  A  L  G  A  A  Q  G  L  E  Y  L  H  H  G  Y  D  R  P  V  M  H  R  D  V  K  S  S  N  I  L  L  D  E  Q  M  K  P  K  I  A  D  F  G  L  A  K  V  L  H  V  N  G  T  K  D  S  S  Q  V  V  A  G  T  H  G  Y  I  A  P   : E  Y  A  Y  T  T  K  V  T  E  K  S  D  V  Y  S  F  G  V  V  L  M  E  L  V  T  G  K  K  P  V  E  A  E  Y  G  E  N  I  D  I  V  Q  W  V  C  S  K  I  R  N  N  T  S  M  I  D  L  V  D  S  S  I  F  E  G  F  K  E  D  A  V  E  V  L  K  I  A  V  H  C  T  S  R  T  P  A  L  R  P  S  M  R  M  V  V  H  M  L  E  E  A  E  P  C  K  L  T  D  V  V  V  N  S  P  N  E  D  G  R  K  Q  G  L  A  N  *  W  Q  V  M  M  L  N  Y  I  S  F  L  Q  N  I  E  L  C  C  K  F  T  K  N  A  *  C  T  Y  D  T  F  E  E  I  V  Y  F  T  A  A  L  I  N  P  A  S  K  *  C  I  S  H  P  N  Y  *  *  K  L  S  S  *  S  T  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="151235" stop="151565"/>
                    <exon start="151664" stop="152043"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSITSEDSNMLVYEYLTNGSLWDRLHTSQKVKMDWLVRYDIALGAAQGLEYLHHGYDRPVMHRDVKSSNILLDEQMKPKIADFGLAKVLHVNGTKDSSQVVAGTHGYIAPEYAYTTKVTEKSDVYSFGVVLMELVTGKKPVEAEYGENIDIVQWVCSKIRNNTSMIDLVDSSIFEGFKEDAVEVLKIAVHCTSRTPALRPSMRMVVHMLEEAEPCKLTDVVVNSPNEDGRKQGLAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="153673" PGL_stop="152963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="153673" e_stop="152963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="153673" e_stop="152963" e_length="711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="153673" stop="152963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574137" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAAAATGAGTCGTCAAAAAAAGAAGGAGAAGCTTGTCAAACCTCAAGAAAAGACTAAAAGCTTGCTAGAGCCATGGCCAAATCTCCCTCAACAGCTCCTCAACTTTATGGGAAGGCAACATCCTGATGAAACCAATCGTCTTATGCAGAACATCTGCTTCCCTGGTGTTACTAAATCATGGAGAGCAGTACCTAAGCAATGTAGTAACAAAAATGCACAATTACCCTGGCTTGAAATTTCCGACAAAGATCATTTCTTCCAGTCCAAGACTCAAGAGCATACCCTCACCATCCCATTTCGACTAGGTGAATATTGGTGGTACAGTAGAAGGTCATCTTGGGATGTTCCTTGGACACATTTTCATGGATGTTCACACGGGTTGATTGTCGCTGGAGGGAAGGATCCTGCAACGTACTGTCTCTTGATTCCTACTTCAAGATTCACTTATCGGAGTATTCCCACTTGGGATCCCACAATTCCATTCAAGTTTGCAACTCTGTCTTCAAATCCTTATAACAATAACAAGGCCTGTTTTTTGATGGTGTTAACAGGATGTTCCACTCCAGCCTTTGTGGTTTCCAATATTGGATACCAAAATAAATGGATGAAAGAAGAGAACACCTTGCTTGACCCTAACTGTTCAAAAAGGGAACTAATGCAATTTACTAATGCCATCGGCTTTGAAGGTAAGTTCTATGCATTGAGCTTA</gDNA_template>
            <first_frame> L  K  M  S  R  Q  K  K  K  E  K  L  V  K  P  Q  E  K  T  K  S  L  L  E  P  W  P  N  L  P  Q  Q  L  L  N  F  M  G  R  Q  H  P  D  E  T  N  R  L  M  Q  N  I  C  F  P  G  V  T  K  S  W  R  A  V  P  K  Q  C  S  N  K  N  A  Q  L  P  W  L  E  I  S  D  K  D  H  F  F  Q  S  K  T  Q  E  H  T  L  T  I  P  F  R  L  G  E  Y  W  W  Y  S  R  R  S  S  W  D  V  P  W  T  H  F  H  G  C  S  H  G  L  I  V  A  G  G  K  D  P  A  T  Y  C  L  L  I  P  T  S  R  F  T  Y  R  S  I  P  T  W  D  P  T  I  P  F  K  F  A  T  L  S  S  N  P  Y  N  N  N  K  A  C  F  L  M  V  L  T  G  C  S  T  P  A  F  V  V  S  N  I  G  Y  Q  N  K  W  M  K  E  E  N  T  L  L  D  P  N  C  S  K  R  E  L  M  Q  F  T  N  A  I  G  F  E  G  K  F  Y  A  L  S  L </first_frame>
            <second_frame>  *  K  *  V  V  K  K  R  R  R  S  L  S  N  L  K  K  R  L  K  A  C  *  S  H  G  Q  I  S  L  N  S  S  S  T  L  W  E  G  N  I  L  M  K  P  I  V  L  C  R  T  S  A  S  L  V  L  L  N  H  G  E  Q  Y  L  S  N  V  V  T  K  M  H  N  Y  P  G  L  K  F  P  T  K  I  I  S  S  S  P  R  L  K  S  I  P  S  P  S  H  F  D  *  V  N  I  G  G  T  V  E  G  H  L  G  M  F  L  G  H  I  F  M  D  V  H  T  G  *  L  S  L  E  G  R  I  L  Q  R  T  V  S  *  F  L  L  Q  D  S  L  I  G  V  F  P  L  G  I  P  Q  F  H  S  S  L  Q  L  C  L  Q  I  L  I  T  I  T  R  P  V  F  *  W  C  *  Q  D  V  P  L  Q  P  L  W  F  P  I  L  D  T  K  I  N  G  *  K  K  R  T  P  C  L  T  L  T  V  Q  K  G  N  *  C  N  L  L  M  P  S  A  L  K  V  S  S  M  H  *  A   </second_frame>
            <third_frame>   K  N  E  S  S  K  K  E  G  E  A  C  Q  T  S  R  K  D  *  K  L  A  R  A  M  A  K  S  P  S  T  A  P  Q  L  Y  G  K  A  T  S  *  *  N  Q  S  S  Y  A  E  H  L  L  P  W  C  Y  *  I  M  E  S  S  T  *  A  M  *  *  Q  K  C  T  I  T  L  A  *  N  F  R  Q  R  S  F  L  P  V  Q  D  S  R  A  Y  P  H  H  P  I  S  T  R  *  I  L  V  V  Q  *  K  V  I  L  G  C  S  L  D  T  F  S  W  M  F  T  R  V  D  C  R  W  R  E  G  S  C  N  V  L  S  L  D  S  Y  F  K  I  H  L  S  E  Y  S  H  L  G  S  H  N  S  I  Q  V  C  N  S  V  F  K  S  L  *  Q  *  Q  G  L  F  F  D  G  V  N  R  M  F  H  S  S  L  C  G  F  Q  Y  W  I  P  K  *  M  D  E  R  R  E  H  L  A  *  P  *  L  F  K  K  G  T  N  A  I  Y  *  C  H  R  L  *  R  *  V  L  C  I  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0071F18.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="153673" stop="152963"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKMSRQKKKEKLVKPQEKTKSLLEPWPNLPQQLLNFMGRQHPDETNRLMQNICFPGVTKSWRAVPKQCSNKNAQLPWLEISDKDHFFQSKTQEHTLTIPFRLGEYWWYSRRSSWDVPWTHFHGCSHGLIVAGGKDPATYCLLIPTSRFTYRSIPTWDPTIPFKFATLSSNPYNNNKACFLMVLTGCSTPAFVVSNIGYQNKWMKEENTLLDPNCSKRELMQFTNAIGFEGKFYALSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 529 chains have been computed
$ 
$ memory statistics:
$ 945152 bytes spliced alignments in total
$ 420 spliced alignments have been stored
$ 2250 bytes was the average size of a spliced alignment
$ 49144 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 1965 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 574 backtrace matrices have been allocated
$ 
$ date finished: 2009-10-08 05:02:53
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