<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:19:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570635" ref_strand="+" ref_description="SGN-U570635 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|147858727|emb|CAN82909.1| (e_value=4e-16) hypothetical; (*ATH) AT5G36930.1 (e_value=6e-13) | Symbol: None | disease resistance protein (TIR-NBS-LRR class), putative, domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. | chr5:14584881-14589845 REVERSE | Aliases: MLF18.50, MLF18_50; ">
      <seq>ggcttccgaagccgagaaaagttctagagcttccatgggtttctttaccaaaatctttggttaatttaagtctatctgggtgcaatctatctgacgttgcttttccaagggatttcagtaatttaatgttgttgcagaacctagacctcagtaaaaatccaatcagttgtcttccagattgcgtcagaactctgtccaggctcaacagtcttgaattaggttcttgtacaatgcttaaattactcatagacctacctcgcatccacaatttgaggttgggacactgcacttccctagaaagagtaacatatctatcagaagtgtgccgtgcagtagtttaccatttaaatggctgtaaagcactcactgatatggagggaaacttcaagttggaagccatgggaggaattgagatagaaaagaagtcattggaattaagcatgtgggattctgtcggaagctccgaagtgaaattgtataacaattcaactaatacagaaagtagaggaccagtaaaggtgttgtttgaaagggggatgatcagcatatatcttccggggagcaaggttcctaattggttttgttacaagagtgctggagcaactctatctttcgctgtcccttcacctcctgatctcaagatccagggcataactgtgtgctcagtgtacacaattgactggaaagtctggattgcgggtatcgaattttatttgataatccataatgagcagaagaatgtgaagctgatttatagcccgacttgctatggtcttcctgaagcccaaaacgaaatgttatggttcacccatttgatatttctgagtcagctggatgctggtgacaccttgaatgtctcagttgttactatggagggttttagcatcaaggaaatgggtattcacttgatgcatgatgagcaagtagacatgattttgaactcaaacagtcatgaaatgcagaaagattatccttatcaggggatgacgcctgccaaacgtcaagggcttgtagatttatactgttttggccatatcgggcctggattggactacattttgccantatataccttgagatccatgaatgggaattctttgaagaaatgtgttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="4074" stop="5928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4374" g_stop="4891" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4892" i_stop="5032" i_length="141">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5033" g_stop="5628" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="1115" r_length="597" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-U570635" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1114</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4374" e_stop="4891"/>
          <exon e_start="5033" e_stop="5628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCCGAAGCCGAGAAAAGTTCTAGATCTTCCATGGGTTTCTTTACCAAAATCTTTGGTTAATTTAAGTCTATCTGGGTGCAATCTATCTGACGTTGCTTTTCCAAGGGATTTCAGTAATTTAATGTTGTTGCAGAACCTAGACCTCAGTAAAAATCCAATCAGTTGTCTTCCAGATTGCGTCAGAACTCTGTCCAGGCTCAACAGTCTTGAATTAGGTTCTTGTACAATGCTTAAATTACTCATAGACCTACCTCGCATCCACAATTTGAGGTTGGGACACTGCACTTCCCTAGAAAGAGTAACATATCTATCAGAAGTGTGCCGTGCAGTAGTTTACCATTTAAATGGCTGTAAAGCACTCACTGATATGGAGGGAAACTTCAAGTTGGAAGCCATGGGAGGAATTGAGATAGAAAAGAAGTCATTGGAATTAAGCATGTGGGATTCTGTCGGAAGCTCCGAAGTGAAATTGTATAACAATTCAACTAATACAGAAAGTAGAGGACCAGTAAAGGTACTTTCTCCTCTTCCATTCCCCCACCCCACTCCCAAAGAAGGTGATGACGGATCTATTCTTCATGTAACAGTTGTATCGGTTGGTTCCTTTATTTGTTTTTTTTTTCTATCATATTTGATGAGATTCTTCATGACACAGGTGTTGTTTGAAAGGGGGATGATCAGCATATATCTTCCGGGGAGCAAGGTTCCTAATTGGTTTTGTTACAAGAGTGCTGGAGCAACTCTATCTTTCGCTGTCCCTTCACCTCCTGATCTCAAGATCCAGGGCATAACTGTGTGCTCAGTGTACACAATTGACTGGAAAGTCTGGATTGCGGGTATCGAATTTTATTTGATAATCCATAATGAGCAGAAGAATGTGAAGCTGATTTATAGCCCGACTTGCTATGGTCTTCCTGAAGCCCAAAACGAAATGTTATGGTTCACCCATTTGATATTTCTGAGTCAGCTGGATGCTGGTGACACCTTGAATGTCTCAGTTGTTACTATGGAGGGTTTTAGCATCAAGGAAATGGGTATTCACTTGATGCATGATGAGCAAGTAGACATGATTTTGAACTCAAACAGTCATGAAATGCAGAAAGATTATCCTTATCAGGGGATGACGCCTGCCAAACGTCAAGGGCTTGTAGATTTATACTGTTTTGGCCATATCGGGCCTGGATTGGACTACATTTTGCCA-TATATACCTTGAGATCCATGAATGGGAATTCTTTGAAGAAATGTGTTCTG</genome_strand>
        <mrna_strand>GGCTTCCGAAGCCGAGAAAAGTTCTAGAGCTTCCATGGGTTTCTTTACCAAAATCTTTGGTTAATTTAAGTCTATCTGGGTGCAATCTATCTGACGTTGCTTTTCCAAGGGATTTCAGTAATTTAATGTTGTTGCAGAACCTAGACCTCAGTAAAAATCCAATCAGTTGTCTTCCAGATTGCGTCAGAACTCTGTCCAGGCTCAACAGTCTTGAATTAGGTTCTTGTACAATGCTTAAATTACTCATAGACCTACCTCGCATCCACAATTTGAGGTTGGGACACTGCACTTCCCTAGAAAGAGTAACATATCTATCAGAAGTGTGCCGTGCAGTAGTTTACCATTTAAATGGCTGTAAAGCACTCACTGATATGGAGGGAAACTTCAAGTTGGAAGCCATGGGAGGAATTGAGATAGAAAAGAAGTCATTGGAATTAAGCATGTGGGATTCTGTCGGAAGCTCCGAAGTGAAATTGTATAACAATTCAACTAATACAGAAAGTAGAGGACCAGTAAAG.............................................................................................................................................GTGTTGTTTGAAAGGGGGATGATCAGCATATATCTTCCGGGGAGCAAGGTTCCTAATTGGTTTTGTTACAAGAGTGCTGGAGCAACTCTATCTTTCGCTGTCCCTTCACCTCCTGATCTCAAGATCCAGGGCATAACTGTGTGCTCAGTGTACACAATTGACTGGAAAGTCTGGATTGCGGGTATCGAATTTTATTTGATAATCCATAATGAGCAGAAGAATGTGAAGCTGATTTATAGCCCGACTTGCTATGGTCTTCCTGAAGCCCAAAACGAAATGTTATGGTTCACCCATTTGATATTTCTGAGTCAGCTGGATGCTGGTGACACCTTGAATGTCTCAGTTGTTACTATGGAGGGTTTTAGCATCAAGGAAATGGGTATTCACTTGATGCATGATGAGCAAGTAGACATGATTTTGAACTCAAACAGTCATGAAATGCAGAAAGATTATCCTTATCAGGGGATGACGCCTGCCAAACGTCAAGGGCTTGTAGATTTATACTGTTTTGGCCATATCGGGCCTGGATTGGACTACATTTTGCCANTATATACCTTGAGATCCATGAATGGGAATTCTTTGAAGAAATGTGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574030" ref_strand="+" ref_description="SGN-U574030 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|15223713|ref|NP_175519.1| (e_value=5e-43) hypothetical protein [Arabidopsis thaliana]; (*ATH) AT1G51080.1 (e_value=3e-45) | Symbol: None | expressed protein | chr1:18933551-18934408 REVERSE | Aliases: F23H24.7, F23H24_7; ">
      <seq>atcangtcaaatnangtcatntaaaangaaatgaatggatngaataataatttnttgtcaaactccaaaaaantcattacatcaggaaaacagtctctcttatccactcaaaattaggattgtttggcctgcagcctctctccccttgagagatgaatcttgctccaatctcattcaatgtctcatcttctacagttccaagtttccatatagcttcttcacattcacagtccttgtcgttgaggaggagtattactcctttagcaattgtatccagaaaagttattccagcgcgagaccgagtcatagattttggaaaatacaaaggtaaaatgctgggaacactcccatctaagtacctcaaatgggtgacaaagaatctccgagctcgagattttgaagaatgggctcagctagcagatcaagtcctctctgaccctatctatagggaccgaattgaatgggagtttgcccaaaatctcctcaacggcgacgtttcaccggcacggacgcagagttccgtttcggagttgctggaaatcagcaccagattccgttgggacaatgaggataagttgggttggagcaaaattgattttgagttacttgggacctctaaaggtggtcgaataccaaggctttctgattcccccaataattcaattagggttgaagataaaaaaaagggtacagatggagttgatagtagtcaggatgatggcgaaaaagacaatagggagagaagacgggaaaggataaagttacagaggagaccgaatgaatctggccaacgttcaactagtgttacacagagaagagcgaattctgatcatttcaatccactcaaatcagacccaattggcgccactaataataacactagtagcggcagaacggaaactccgagtcgttttcggggtcgtgaatccctgttgaaagaagcattgtccagaaaaatacctcaaattaatgaatttctgatacctggaggagatatgtttaaccttaccaaaataatcaacatttctttcttcatgaaactatactagttaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="16759" stop="15102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16459" g_stop="15402" g_length="1058"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1057" r_length="1057" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U574030" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1058</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16459" e_stop="15402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGTCAAATAATGTCATATAAAATGAAATGAATGGATCGAATAATAATTTCTTGTCAAACTCCAAAAAAATCATTACATCAGGAAAACAGTCTCTCTTATCCACTCAAAATTAGGATTGTTTGGCCTGCAGCCTCTCTCCCCTTGAGAGATGAATCTTGCTCCAATCTCATTCAATGTCTCATCTTCTACAGTTCCAAGTTTCCATATAGCTTCTTCACATTCACAGTCCTTGTCGTTGAGGAGGAGTATTACTCCTTTAGCAATTGTATCCAGAAAAGTTATTCCAGCGCGAGACCGAGTCATAGATTTTGGAAAATACAAAGGTAAAATGCTGGGAACACTCCCATCTAAGTACCTCAAATGGGTGACAAAGAATCTCCGAGCTCGAGATTTTGAAGAATGGGCTCAGCTAGCAGATCAAGTCCTCTCTGACCCTATCTATAGGGACCGAATTGAATGGGAGTTTGCCCAAAATCTCCTCAACGGCGACGTTTCACCGGCACGGACGCAGAGTTCCGTTTCGGAGTTGCTGGAAATCAGCACCAGATTCCGTTGGGACAATGAGGATAAGTTGGGTTGGAGCAAAATTGATTTTGAGTTACTTGGGACCTCTAAAGGTGGTCGAATACCAAGGCTTTCTGATTCCCCCAATAATTCAATTAGGGTTGAAGAT-AAAAAAAGGGTACAGATGGAGTTGATAGTAGTCAGGATGATGGCGAAAAAGACAATAGGGAGAGAAGACGGGAAAGGATAAAGTTACAGAGGAGACCGAATGAATCTGGCCAACGTTCAACTAGTGTTACACAGAGAAGAGCGAATTCTGATCATTTCAATCCACTCAAATCAGACCCAATTGGCGCCACTAATAATAACACTAGTAGCGGCAGAACGGAAACTCCGAGTCGTTTTCCGGGTCGTGAATCCCTGTTGAAGAAAGCATTGTCCAGAAAAAATACCTCAAATTAATGAATTTCTGATACCTGGAGGAGATATGTTTAACCTTAACCAAAATAATCAACATTTCTTTCTTCATGAAACTATACTAGTTAATGAT</genome_strand>
        <mrna_strand>ATCANGTCAAATNANGTCATNTAAAANGAAATGAATGGATNGAATAATAATTTNTTGTCAAACTCCAAAAAANTCATTACATCAGGAAAACAGTCTCTCTTATCCACTCAAAATTAGGATTGTTTGGCCTGCAGCCTCTCTCCCCTTGAGAGATGAATCTTGCTCCAATCTCATTCAATGTCTCATCTTCTACAGTTCCAAGTTTCCATATAGCTTCTTCACATTCACAGTCCTTGTCGTTGAGGAGGAGTATTACTCCTTTAGCAATTGTATCCAGAAAAGTTATTCCAGCGCGAGACCGAGTCATAGATTTTGGAAAATACAAAGGTAAAATGCTGGGAACACTCCCATCTAAGTACCTCAAATGGGTGACAAAGAATCTCCGAGCTCGAGATTTTGAAGAATGGGCTCAGCTAGCAGATCAAGTCCTCTCTGACCCTATCTATAGGGACCGAATTGAATGGGAGTTTGCCCAAAATCTCCTCAACGGCGACGTTTCACCGGCACGGACGCAGAGTTCCGTTTCGGAGTTGCTGGAAATCAGCACCAGATTCCGTTGGGACAATGAGGATAAGTTGGGTTGGAGCAAAATTGATTTTGAGTTACTTGGGACCTCTAAAGGTGGTCGAATACCAAGGCTTTCTGATTCCCCCAATAATTCAATTAGGGTTGAAGATAAAAAAAAGGGTACAGATGGAGTTGATAGTAGTCAGGATGATGGCGAAAAAGACAATAGGGAGAGAAGACGGGAAAGGATAAAGTTACAGAGGAGACCGAATGAATCTGGCCAACGTTCAACTAGTGTTACACAGAGAAGAGCGAATTCTGATCATTTCAATCCACTCAAATCAGACCCAATTGGCGCCACTAATAATAACACTAGTAGCGGCAGAACGGAAACTCCGAGTCGTTTTCGGGGTCGTGAATCCCTGTTGAAAGAAGCATTGTCCAG-AAAAATACCTCAAATTAATGAATTTCTGATACCTGGAGGAGATATGTTTAACCTT-ACCAAAATAATCAACATTTCTTTCTTCATGAAACTATACTAGTTAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569460" ref_strand="+" ref_description="SGN-U569460 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>gaaaataaggtgatgatgcctccacttattcaggacatggggaaagaaattattcgtcgagaatcacaagatgatcccgagagattgttgtgcaaatggttgaaccaatgcggtctgtcacatgacttgacagaaaacagtggaactgatgcagatggagtagacctccaaggcacgcatctgccagaagatggtcttgtcccagcacttggtcctaatgctgcaaaaagaccatattatcaagattttccagaaatagctgttctgccatacctaggtaattcgttgaaaaggcgttttgttggacttctttcgacattccccttatctggtggcctcaaaagattcttcccatgatgagaaaagtacttgtgaagacgccttctttctttcggaaaaaccaacattttactacttaatcttgtggagctagaagatatacatgagtgttgtgtgaggcggcggggcttcaataaggatcattatctgataatatctgagcatttcttttgcttgacatactgtcttagttgcacaaatttgttagttgcagatgtatattctgtcctgttctttttcatcagcttcaggtgggcaatggtgtaaattatgttttattaactcattgtacagtcataggatcatttcttgctagctgcatagtttacttcagcaaacagttcactggaaggaactaaaaatgtaatctttaaccattcctttttagtctctcaaaaaatatctgaagttttaccattccttttatatttctaattaaattntattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="24137" stop="22660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23837" g_stop="23697" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23696" i_stop="23608" i_length="89">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23607" g_stop="22960" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="789" r_length="648" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U569460" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23837" e_stop="23697"/>
          <exon e_start="23607" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATAAGGTGATGATGCCTCCACTTATTCAGGACATGGGGAAAGAAATTATTCGTCGAGAATCACAAGATGATCCCGAGAGATTGTTGTGCAAATGGTTGAACCAATGCGGTCTGTCACATGACTTGACAGAAAACAGTGTAAGAATTTTGACTTTTGCATTCATTTTAAGCTTGTCTTGGTAGATTCTCAAAGTGTTGTTGTTTCTCACAAAATCTTTCTGCAACAGGGAACTGATGCAGATGGAGTAGACCTCCAAGGCACGCATCTGCCAGAAGATGGTCTTGTCCCAGCACTTGGTCCTAATGCTGCAAAAAGACCATATTATCAAGATTTTCCAGAAATAGCTGTTCTGCCATACCTAGGTAATTCGTTGAAAAGGCGTTTTGTTGGACTTCTTTCGACATTCCCCTTATCTGGTGGCCTCAAAAGATTCTTCCCATGATGAGAAAAGTACTTGTGAAGACGCCTTCTTTCTTTCGGAAAAACCAACATTTTACTACTTAATCTTGTGGAGCTAGAAGATATACATGAGTGTTGTGTGAGGCGGCGGGGCTTCAATAAGGATCATTATCTGATAATATCTGAGCATTTCTTTTGCTTGACATACTGTCTTAGTTGCACAAATTTGTTAGTTGCAGATGTATATTCTGTCCTGTTCTTTTTCATCAGCTTCAGGTGGGCAATGGTGTAAATTATGTTTTATTAACTCATTGTACAGTCATAGGATCATTTCTTGCTAGCTGCATAGTTTACTTCAGCAAACAGTTCACTGGAAGGAACTAAAAATGTAATCTTTAACCATTCCTTTTTAGTCTCTCAAAAAATATCTGAAGTTTTACCATTCCTTTTATATTTCTAATTAAATTTTATTGAC</genome_strand>
        <mrna_strand>GAAAATAAGGTGATGATGCCTCCACTTATTCAGGACATGGGGAAAGAAATTATTCGTCGAGAATCACAAGATGATCCCGAGAGATTGTTGTGCAAATGGTTGAACCAATGCGGTCTGTCACATGACTTGACAGAAAACAGT.........................................................................................GGAACTGATGCAGATGGAGTAGACCTCCAAGGCACGCATCTGCCAGAAGATGGTCTTGTCCCAGCACTTGGTCCTAATGCTGCAAAAAGACCATATTATCAAGATTTTCCAGAAATAGCTGTTCTGCCATACCTAGGTAATTCGTTGAAAAGGCGTTTTGTTGGACTTCTTTCGACATTCCCCTTATCTGGTGGCCTCAAAAGATTCTTCCCATGATGAGAAAAGTACTTGTGAAGACGCCTTCTTTCTTTCGGAAAAACCAACATTTTACTACTTAATCTTGTGGAGCTAGAAGATATACATGAGTGTTGTGTGAGGCGGCGGGGCTTCAATAAGGATCATTATCTGATAATATCTGAGCATTTCTTTTGCTTGACATACTGTCTTAGTTGCACAAATTTGTTAGTTGCAGATGTATATTCTGTCCTGTTCTTTTTCATCAGCTTCAGGTGGGCAATGGTGTAAATTATGTTTTATTAACTCATTGTACAGTCATAGGATCATTTCTTGCTAGCTGCATAGTTTACTTCAGCAAACAGTTCACTGGAAGGAACTAAAAATGTAATCTTTAACCATTCCTTTTTAGTCTCTCAAAAAATATCTGAAGTTTTACCATTCCTTTTATATTTCTAATTAAATTNTATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563004" ref_strand="+" ref_description="SGN-U563004 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|105923041|gb|ABF81452.1| (e_value=5e-92) TIR-NBS; (*ATH) AT5G36930.1 (e_value=8e-72) | Symbol: None | disease resistance protein (TIR-NBS-LRR class), putative, domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. | chr5:14584881-14589845 REVERSE | Aliases: MLF18.50, MLF18_50; (*SWP) sp|Q40392|TMVRN_NICGU (e_value=6e-61) TMV resistance protein N OS=Nicotiana glutinosa GN=N; ">
      <seq>tttttcccttcacgcgggcctttccattgacttgagtcctcaaagttctcagttttcctattttccttgtctagttttcattgtcaaaatctcaattggatcattatcctctttgtctttgcatcaactctcagttgtgtcatcgttttcttggacttttttcaatggcaaccccacaaaaccgttattctttccatgttttcttgagttttagaggcgaagacacccggaaaaactttactgatcatctctacacagctctcatcaacgctggaattcgaacttttcgagatgatgacgaaatccgcaggggagaaaacatagaatctgaactgcaaaagggtattcgagaatccaagatttcactaattgtcttctctaaagactacgcttcttcaagatggtgtcttgatgagcttgtcaacattcttgatcgaagaaagaaagagggtcatactgtcttgcctgttttttacactgtcagccctgaggatgttcagaaccaaagtggaagttttgctgaagcttttgtgaatcatgaaaagagaggaaatgcagagagtggagagaaaagaaaggaatggatggagaagatggagaaatggagattagctctgaaggaagttgctgaattggaaggaatgtgcttagccaaagaagtagacgggcatgaggcaaaattcatccaaaagatcattaaggagatactcaaaagattgaatcgcacagtacttagtgtaccttcatacacagttggactagaggctcgagtgaaggacattaactcatggttacaggatgaatccagtgaagttggcattgggatgatctgtggacttggtggcgttggaaagactactgttgctaaagtagcttacaactctaattatgatagatttgatgggagttgctttcttgcaaatgtcagagaaatctctgagaaacatccaaatggtcaggtttatttgcaaaaacaaattttcgaaagtattttgaaaggcagaaaggaaaaaatatacaatgctgatgaaggaattgtcaaaatgaaagatgctattggcaacaaaaaggtttttattgtatttgatgatgtggatcagctggatgtcttagattcacttattggaacaagggattggttttatccggggagtaaaattctcattacgacaaggtgtgagaaactattgaagtcctatgagaggcacatgctattcaagataaaggaacttggagatgacgagtctctaaagctcttcagttggtatgcttttgcacaagaccacccattacaagagttcaagatgctttcaacagaagcaatacagcattgctgtgggcttccggtagctctttatgatttgggatcatttctttcagggagacgtacggatatatggaggagtaaattgcagaaattggaagcaatccctcatagcacatgtcaaaagaatcttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="28404" stop="23709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28104" g_stop="27438" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27437" i_stop="24802" i_length="2636">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24801" g_stop="24009" g_length="793"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="1460" r_length="793" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U563004" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28104" e_stop="27438"/>
          <exon e_start="24801" e_stop="24009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCCTTCACGCGGGCCTTTCCATTGACTTGAGTCCTCAAAGTTCTCAGTTTTCCTATTTTCCTTGTCTAGTTTTCATTGTCAAAATCTCAATTGGATCATTATCCTCTTTGTCTTTGCATCAACTCTCAGTTGTGTCATCGTTTTCTTGGACTTTTTTCAATGGCAACCCCACAAAACCGTTATTCTTTCCATGTTTTCTTGAGTTTTAGAGGCGAAGACACCCGGAAAAACTTTACTGATCATCTCTACACAGCTCTCATCAACGCTGGAATTCGAACTTTTCGAGATGATGACGAAATCCGCAGGGGAGAAAACATAGAATCTGAACTGCAAAAGGGTATTCGAGAATCCAAGATTTCACTAATTGTCTTCTCTAAAGACTACGCTTCTTCAAGATGGTGTCTTGATGAGCTTGTCAACATTCTTGATCGAAGAAAGAAAGAGGGTCATACTGTCTTGCCTGTTTTTTACACTGTCAGCCCTGAGGATGTTCAGAACCAAAGTGGAAGTTTTGCTGAAGCTTTTGTGAATCATGAAAAGAGAGGAAATGCAGAGAGTGGAGAGAAAAGAAAGGAATGGATGGAGAAGATGGAGAAATGGAGATTAGCTCTGAAGGAAGTTGCTGAATTGGAAGGAATGTGCTTAGCCAAAGAAGTAGACGGGTCAGTTTCCTAAATTATCCAAACCCTTGATATTTTTTCTTCTTTTTCGGTATTTGCAGTTTATCCCCCCTTCATCAATTAGTCTTGAGAGCTTTGGTAGTTCTAATTGTTTCTGGTTAAAGAAATAGTTGTGGATTAATAATTGCTTTAATCTTTACTTGAAGGGAAACTTGGCTGATGATATTAGGAAAGTACTATAGATAATAATTTAAAACTATGTTTTGTTCTGGATTAAGTAGTCAAGCGATTGATTTCTCTATTTAAATCTGGAAGTTCTCTTTTGAGGATCAACGTTATTCCAACTTAGCCAACAAAGATTCGCCCCAAACAAGAAAACCTACTCATCAGTTGGAAAGTTCTGATGTAAATTTGCCATTCACTCAGCACTAGTTGTCCTGTATTTTAGGTGGCTTTTGCAATGACATAGTGCCAGTTTGCTAATTCATAAGTAAACAAGTTGTAAACTTAATTTTCTGAGAATAGCTTATAGTATCTATGCATCTGACTATCATAAATGTCCAAGTGACTAATGTGGCCCTCAAAATCATCTATTGTAAAGGTTATTTCAGGAAAAGATACACTGGAAATGCTAAATGAGCAAAATTTAAAAGCTGGATTGACGAAATTTCTGCCAAGGATGAAAAATTAACTGTGAACAGTCCAAACTTAAAAGGAGATTTAATATGTTAAAGACCCTGAATAGTACGTTGAGCTCTAACCAAGTTCGAGCAAAAAAGTTTAACAAAGTTGGCATAAATCTAATTTGAAAGACTAATCAGATGAAAGACACAAAGTTCAAAGCTAAAGATGACGAATTGCTACCTCAGGTTGGATTCTAGTCAAGTGTGACACTCACGTGTAAGTATGCCAAATGGCAAGTACTATGCTGCATAAGTCGCGATTGAAACTCACGGGGTTCCCCTAAAAGATAGAGATTCCTAGCTTTCATGTATATTCCTTTTCTCTGAATGTAATGTATTGTTGGTTATCTCCACTCTAGAGACAAACGAGGATGGTCTCCGGGCTTCTTTTGTGCTATGAAATGTGTCACGTGTGGATCCTATTAGAGAAGCCTCATAACTGATCCCTTTTACAGTATTTTCTGCCTGAAAGACTCAAACCACTAGAAATAGAGGGTCTTTTCCCTATTAGATCTATGCTGATTTTGAAAGGAGTCCACATAGACAACATACTGACTTGTACTTATCCATTACAATCACCTATATCCTTAGGAAACACATTTTAATGCCCAATATTTCTGACGACTCTTCAATTAGATTTCTGTGTCCTCTTTTCCATGGATGTGTGCTGCCTTCTACCTTGGGGGTATGGAGGCACCCTAGTTAAACTCTTGCTGTGTGTGGATGTGTGTGTGCATACATAAACATGTCCCTTAACTTGGTGTCGACGAACAATTATGCCCTCCATCTTTGTATGTGCACAAGTAGCCACTTAAACTATTATAAAATTGGACAATTAGACATGAGTGTCCTACATGGCATAATACACCTAGGATGCCATGTAGAATACAAAATTGCCATGTAGGGTCCCATGTAGGAAGAATGTGTCCATTTGCTTAATTTTATATAAATTTGAGTGCCCACTTGCGCACACCCAAAGTTAAAGGTCATAGTTGTGAATTGACGCCAAGTTAAGGGTCATGTTTATGTATAATGCCTTCTTTTTTCTTTTCCGTTCTTTCCTTCCTTTTCCTGCTTATCATATGCCAGAAGTTAGTAAGACCTCTCTCTGACTAGTTGAGGCAAAAAACTTGAACAATACAACTAGGGACACTTGGATTTAAACCTTGCTCTCAAATTATTCTGATTAAGATAGATGGGAGCAATAATTTCTTGCTTTCCACGGAATCTTCCTTCATGTCTGTGCATGCTCTTGACTTGTATGTGCTTTTAGCTTTTCCAATCAGCAGTTCTTCAAGCCATTGTTTCCTCAATTATTTGTTATCAGTGTCAAAATGATCTATTTAAAGAGTGAAGGATATAGAGGGTACCAAATAGCTGAATAGACAAATCAAAAGGTACAAAAGAACGAAATGTTGTCATGATACACTCCGTTCTCCTAATGTGGATGCACTTTGTATCAGTATCTTTTGGAAATTTTTGTATGATATAGCGTCAGTTATGATGAGGCTAAAGTTGTCTTAATCCTTTTCCACTTTTTCTAACCGGAAATGGTTCACTGTAATATTTCATGGTTCTCTATTTATTATACTACTTTATTTTGCTGTCCATTTCCCTCTTTGTTGCTCCTCAATATTGTCAAATTCTTCACAGCACACAAGTAAAAGTAAATATCACTCGTTTTTTCTCCTGTAGTACCAGTAAGCCACATATATTTCATCTCTGTTGCTTTTCTGGAAAATGTAAAATTCATTGATTTAGCATTAAGAGATTGCTTCAAAGTATACTTTCACATGTTCTCTTAACTAGGCACCTAACCAGGTTATTTTGTTTATTGATGATTAATATGACAGATCATCTTGGTGTGTTATATTTGCTCTAAAAGTATTACCATATCAGTGAACTCTTTTTATTTATTGTCCAGTACTTGGCAAGTTGCAGTGCTTTACTGAATTTTCATCTTGTTTTGTCTCTGACATTTACACTGCACCTCAGGCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCAGCTGGATGTCTTAGATTCACTTATTGGAACAAGGGATTGGTTTTATCCGGGGAGTAAAATTCTCATTACGACAAGGTGTGAGAAACTATTGAAGTCCTATGAGAGGCACATGCTATTCAAGATAAAGGAACTTGGAGATGACGAGTCTCTAAAGCTCTTCAGTTGGTATGCTTTTGCACAAGACCACCCATTAGAAGAGTTCAAGATGCTTTCAACAGAAGCAATACAGCATTGCTGTGGGCTTCCGTTAGCTCTTTATGATTTGGGTTCATTTCTTTCAGGGAGAGGTACGGATATATGGAGGAGTAAATTGCAGAAATTGGAAGCAATCCCTCATAGCAGAGTTCAAAAGAATCTTGAG</genome_strand>
        <mrna_strand>TTTTTCCCTTCACGCGGGCCTTTCCATTGACTTGAGTCCTCAAAGTTCTCAGTTTTCCTATTTTCCTTGTCTAGTTTTCATTGTCAAAATCTCAATTGGATCATTATCCTCTTTGTCTTTGCATCAACTCTCAGTTGTGTCATCGTTTTCTTGGACTTTTTTCAATGGCAACCCCACAAAACCGTTATTCTTTCCATGTTTTCTTGAGTTTTAGAGGCGAAGACACCCGGAAAAACTTTACTGATCATCTCTACACAGCTCTCATCAACGCTGGAATTCGAACTTTTCGAGATGATGACGAAATCCGCAGGGGAGAAAACATAGAATCTGAACTGCAAAAGGGTATTCGAGAATCCAAGATTTCACTAATTGTCTTCTCTAAAGACTACGCTTCTTCAAGATGGTGTCTTGATGAGCTTGTCAACATTCTTGATCGAAGAAAGAAAGAGGGTCATACTGTCTTGCCTGTTTTTTACACTGTCAGCCCTGAGGATGTTCAGAACCAAAGTGGAAGTTTTGCTGAAGCTTTTGTGAATCATGAAAAGAGAGGAAATGCAGAGAGTGGAGAGAAAAGAAAGGAATGGATGGAGAAGATGGAGAAATGGAGATTAGCTCTGAAGGAAGTTGCTGAATTGGAAGGAATGTGCTTAGCCAAAGAAGTAGACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCAGCTGGATGTCTTAGATTCACTTATTGGAACAAGGGATTGGTTTTATCCGGGGAGTAAAATTCTCATTACGACAAGGTGTGAGAAACTATTGAAGTCCTATGAGAGGCACATGCTATTCAAGATAAAGGAACTTGGAGATGACGAGTCTCTAAAGCTCTTCAGTTGGTATGCTTTTGCACAAGACCACCCATTACAAGAGTTCAAGATGCTTTCAACAGAAGCAATACAGCATTGCTGTGGGCTTCCGGTAGCTCTTTATGATTTGGGATCATTTCTTTCAGGGAGACGTACGGATATATGGAGGAGTAAATTGCAGAAATTGGAAGCAATCCCTCATAGCACATGTCAAAAGAATCTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589796" ref_strand="+" ref_description="SGN-U589796 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|87241691|gb|ABD33460.1| (e_value=4e-45) putative; (*ATH) AT5G36930.1 (e_value=4e-26) | Symbol: None | disease resistance protein (TIR-NBS-LRR class), putative, domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. | chr5:14584881-14589845 REVERSE | Aliases: MLF18.50, MLF18_50; (*SWP) sp|Q40392|TMVRN_NICGU (e_value=4e-12) TMV resistance protein N OS=Nicotiana glutinosa GN=N; ">
      <seq>cgttaattcattgatttagcattaagagattgcttcaaagtatactttcacatgttctcttaactaggcacctaaccaggttattttgtttattgatgattaatatgacagatcatcttggtgtgttatatttgctctaaaagtattaccatatcagtgaactctttttatttattgtccagtacttggcaagttgcagtgctttactgaattttcatcttgttttgtctctgacatttacactgcacctcaggcatgaggcaaaattcatccaaaagatcattaaggagatactcaaaagattgaatcgcacagtacttagtgtaccttcatacacagttggactagaggctcgagtgaaggacattaactcatggttacaggatgaatccagtgaagttggcattgggatgatctgtggacttggtggcgttggaaagactactgttgctaaagtagcttacaactctaattatgatagatttgatgggagttgctttcttgcaaatgtcagagaaatctctgagaaacatccaaatggtcaggtttatttgcaaaaacaaattttcgaaagtattttgaaaggcagaaaggaaaaaatatacaatgctgatgaaggaattgtcaaaatgaaagatgctattggcaacaaaaaggtttttattgtatttgatgatgtggatcagctggatgtcttagattcacttattggaacaagggattggttttatccggggagtaaaattctcattacgacaaggtgtgagaaactattgaagtcctatgagaggcacatgctattcaagataaaggaacttggagatgacgagtctctaaagctcttcagntggtatgcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="25350" stop="23894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25055" g_stop="24194" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="861" r_length="861" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U589796" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25055" e_stop="24194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAAATTCATTGATTTAGCATTAAGAGATTGCTTCAAAGTATACTTTCACATGTTCTCTTAACTAGGCACCTAACCAGGTTATTTTGTTTATTGATGATTAATATGACAGATCATCTTGGTGTGTTATATTTGCTCTAAAAGTATTACCATATCAGTGAACTCTTTTTATTTATTGTCCAGTACTTGGCAAGTTGCAGTGCTTTACTGAATTTTCATCTTGTTTTGTCTCTGACATTTACACTGCACCTCAGGCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCAGCTGGATGTCTTAGATTCACTTATTGGAACAAGGGATTGGTTTTATCCGGGGAGTAAAATTCTCATTACGACAAGGTGTGAGAAACTATTGAAGTCCTATGAGAGGCACATGCTATTCAAGATAAAGGAACTTGGAGATGACGAGTCTCTAAAGCTCTTCAGTTGGTATGCTTTTG</genome_strand>
        <mrna_strand>CGTTAA-TTCATTGATTTAGCATTAAGAGATTGCTTCAAAGTATACTTTCACATGTTCTCTTAACTAGGCACCTAACCAGGTTATTTTGTTTATTGATGATTAATATGACAGATCATCTTGGTGTGTTATATTTGCTCTAAAAGTATTACCATATCAGTGAACTCTTTTTATTTATTGTCCAGTACTTGGCAAGTTGCAGTGCTTTACTGAATTTTCATCTTGTTTTGTCTCTGACATTTACACTGCACCTCAGGCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCAGCTGGATGTCTTAGATTCACTTATTGGAACAAGGGATTGGTTTTATCCGGGGAGTAAAATTCTCATTACGACAAGGTGTGAGAAACTATTGAAGTCCTATGAGAGGCACATGCTATTCAAGATAAAGGAACTTGGAGATGACGAGTCTCTAAAGCTCTTCAGNTGGTATGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589795" ref_strand="+" ref_description="SGN-U589795 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>taaaaactcgtcatttttttcccttcacgcgggcctttccattgacttgagtcctcaaagttctcagttttcctattttccttgtctagttttcattgtcaaaatctcaattggatcattatcctctttgtctttgcatcaactctcagttgtgtcatcgttttcttggacttttttcaatggcaaccccacaaaaccgttattctttccatgttttcttgagttttagaggcgaanacacccggaaaaactttactgatcatctctacacagctctcatcaacgctggaattcgaacttttcgagatgatgacnaantccgcagggnanaaaacatanaatctgaactgnaaannggtattcnanaatccaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="28418" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28119" g_stop="27745" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U589795" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28119" e_stop="27745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTCGTCATTTTTTTCCCTTCACGCGGGCCTTTCCATTGACTTGAGTCCTCAAAGTTCTCAGTTTTCCTATTTTCCTTGTCTAGTTTTCATTGTCAAAATCTCAATTGGATCATTATCCTCTTTGTCTTTGCATCAACTCTCAGTTGTGTCATCGTTTTCTTGGACTTTTTTCAATGGCAACCCCACAAAACCGTTATTCTTTCCATGTTTTCTTGAGTTTTAGAGGCGAAGACACCCGGAAAAACTTTACTGATCATCTCTACACAGCTCTCATCAACGCTGGAATTCGAACTTTTCGAGATGATGACGAAATCCGCAGGGGAGAAAACATAGAATCTGAACTGCAAAAGGGTATTCGAGAATCCAAGA</genome_strand>
        <mrna_strand>TAAAAACTCGTCATTTTTTTCCCTTCACGCGGGCCTTTCCATTGACTTGAGTCCTCAAAGTTCTCAGTTTTCCTATTTTCCTTGTCTAGTTTTCATTGTCAAAATCTCAATTGGATCATTATCCTCTTTGTCTTTGCATCAACTCTCAGTTGTGTCATCGTTTTCTTGGACTTTTTTCAATGGCAACCCCACAAAACCGTTATTCTTTCCATGTTTTCTTGAGTTTTAGAGGCGAANACACCCGGAAAAACTTTACTGATCATCTCTACACAGCTCTCATCAACGCTGGAATTCGAACTTTTCGAGATGATGACNAANTCCGCAGGGNANAAAACATANAATCTGAACTGNAAANNGGTATTCNANAATCCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586196" ref_strand="+" ref_description="SGN-U586196 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|157354326|emb|CAO46927.1| (e_value=2e-18) unnamed; (*ATH) AT1G14450.1 (e_value=7e-20) | Symbol: None | expressed protein, contains similarity to cytochrome c oxidase subunit I GI:5678701 from (Loligo pealei) | chr1:4946213-4947571 REVERSE | Aliases: F14L17.22, F14L17_22; ">
      <seq>gggggtgggtaatatagaaggcccaagcccaaggagccaatcttgaaagtcctgtaaggcagtgctccaaatcaatttgggtgaaaatcaagaagaggaagaagaacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaataagatacttaacaaacatgtccacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttactatttatgttctggttttctatatatctactctctactttctctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31935" stop="28205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31634" g_stop="31261" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="379" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28505" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="584" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U586196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31634" e_stop="31261"/>
          <exon e_start="28709" e_stop="28505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTAATATAGAAGGCCCAAGCCCAAGGAGCCAATCTTGAAAGTCCTGTAAGGCAGTGCTCCAAATCAATTTGGGTGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTATATATCTACTCTCTACTTTCTCTCC</genome_strand>
        <mrna_strand>TGGGTAATATAGAAGGCCCAAGCCCAAGGAGCCAATCTTGAAAGTCCTGTAAGGCAGTGCTCCAAATCAATTTGGGTGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTATATATCTACTCTCTACTTTCTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596836" ref_strand="+" ref_description="SGN-U596836 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157354326|emb|CAO46927.1| (e_value=3e-17) unnamed; (*ATH) AT1G14450.1 (e_value=1e-18) | Symbol: None | expressed protein, contains similarity to cytochrome c oxidase subunit I GI:5678701 from (Loligo pealei) | chr1:4946213-4947571 REVERSE | Aliases: F14L17.22, F14L17_22; ">
      <seq>aaagtcctgtaaggcagtgctccaaatcaatttgggtgaaaatcaagaagaggaagaagaacagatcgaaaatggggaagccattgggaaccaccggagagtctttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtacgacctctttctgattttgtgattctttattatctcaaccaactgtttgaagtctgtgtttcgtggaatacaatttgatgtgcttgaaagaagtggggtttgtgaattttattacttttatgaaatgggtctcattgatatgctaatgatccgaatgggggtcacttttttttgtttgtataatcctatgttaagaaatgtctttgctgatactggatagatgcttgattaaatttgggtgggttggtgtttcctgaagtgntgtagcctcccccagactcctccttctaagccccatagctatgccaattgtgttttttctcatcgaggtgtatagattatactacaatgattgaatctagtgccttcttttgatatgttcatatcaactttganttcttttgantaccttgncaaaatnanntgtganttctcntggntct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31894" stop="30535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31594" g_stop="30813" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U596836" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31594" e_stop="30813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCCTGTAAGGCAGTGCTCCAAATCAATTTGGGTGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCT</genome_strand>
        <mrna_strand>AAAGTCCTGTAAGGCAGTGCTCCAAATCAATTTGGGTGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTCTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGNTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGANTTCTTTTGANTACCTTGNC-AAAA-TNANNTGTGANTTCTCNTGGNTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600023" ref_strand="+" ref_description="SGN-U600023 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gacgcagtcaagttggacacaatagaaagacatgttcaaattatcccgtgcaaaaataatgatttcgtaatgttacatttgttattgtgttgttttgaatgttaaaaacacgttttgttttattgagtgcagttgttatcattgacatttataaagtttgatttcgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="34261" stop="33494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33961" g_stop="33792" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U600023" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>170</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33961" e_stop="33792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTCGTCAAGGTGGACACAATAGAAAGGCATGTTCAAATTATCCTGTGCAAAAACAATGATTTCATAATGTTACATTTGTTATTGTGTTGTTTTGAATGTTAGAAACATGTTTTGTTTTATTGAGTGCAGTTGTTATCATTTACATTTATAAAGTTTGATTTCGTAAA</genome_strand>
        <mrna_strand>GACGCAGTCAAGTTGGACACAATAGAAAGACATGTTCAAATTATCCCGTGCAAAAATAATGATTTCGTAATGTTACATTTGTTATTGTGTTGTTTTGAATGTTAAAAACACGTTTTGTTTTATTGAGTGCAGTTGTTATCATTGACATTTATAAAGTTTGATTTCGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594837" ref_strand="+" ref_description="SGN-U594837 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157042735|gb|ABV02019.1| (e_value=2e-12) 2-C-methyl-D-erythritol; ">
      <seq>ggggaactcctctattttcattcattttcagttttctctctttgaactgagggagtaaagtacaacaacatgtctactcttcaattgggtatcatcctttcatcttcctctccaatgttcttggcaagtaattctcatatacccaagaatgtattgccttctatctcacttttccccacctactttgtaaagaatccttgcaaaagaacctacagtcatgctgacccaagaaggggtcttttcaagatttcttgnncttccacctcagaaaatcttaacaaggagtcagatgtagtggtggtggaggagaaaagtgtttctgtgattcttcttgctggaggaaaggggaaaagaangggtgcaagcatgcnnnagcannatcttccncttctaggccagccaattgcantgtacagtttctacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="35139" stop="36468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35435" g_stop="35716" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35717" i_stop="35798" i_length="82">
            <donor d_prob="0.822" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35799" g_stop="35876" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="360" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35877" i_stop="36110" i_length="234">
            <donor d_prob="0.892" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36111" g_stop="36166" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="416" r_length="56" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-U594837" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35435" e_stop="35716"/>
          <exon e_start="35799" e_stop="35876"/>
          <exon e_start="36111" e_stop="36166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAACTCCTCTATTTTCATTCATTTTCAGTTTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAGGTTATGTGTCATGTGATGTAAGATCTTCTATTTTTTCAGTGAAAAATTGAATCTTGAACATTGGCATTTTTTATATCGTCAGGAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGTGTAAGTTAAATATGAGTTTAAGAGGGAAATAACTTATTTTGTTGTTTCCTATTACTTGTAATTCTATTTTCATTGTTTGTATTGTTTGGTTCATCTAAAATTTGATGCAGAAGGTCTCTAAAAACTGTTCTGTTTTTCAATTCTTTGCATCTTTCATTCCCATATCTTCAATATCTACATTGTTAAAACTTTCTTCTGTCAGATGATGATGTTGTTATGTTTTGTTTGGAATAGGCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAG</genome_strand>
        <mrna_strand>GGGGAACTCCTCTATTTTCATTCATTTTCAGTTTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAAAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGNNCTTCCACCTCAGAAAATCTTAACAAG..................................................................................GAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAANGGGT..........................................................................................................................................................................................................................................GCAAGCATGCNNNAGCANNATCTTCCNCTTCTAGGCCAGCCAATTGCANTGTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566797" ref_strand="+" ref_description="SGN-U566797 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157042735|gb|ABV02019.1| (e_value=1e-128) 2-C-methyl-D-erythritol; (*ATH) AT2G02500.1 (e_value=3e-102)  Symbol: None | expressed protein, contains Pfam profile: PF01128 uncharacterized protein family UPF0007; identical to GP:12697583 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase {Arabidopsis thaliana}; identical to cDNA 4-Diphosphocytidyl-2C-... ; (*SWP) sp|P69834|ISPD_ARATH (e_value=3e-101) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ISPD; ">
      <seq>cccgtttctattttacttcattcattttcagttttctctctttgaactgagggagtaaagtacaacaacatgtctactcttcaattgggtatcatcctttcatcttcctctccaatgttcttggcaagtaattctcatatacccaagaatgtattgccttctatctcacttttccccacctactttgtaaagaatccttgcagaagaacctacagtcatgctgacccaagaaggggtcttttcaagatttcttgttcttccacctcagaaaatcttaacaaggagtcagatgtagtggtggtggaggagaaaagtgtttctgtgattcttcttgctggaggaaaggggaaaagaatgggtgcaagcatgccaaagcagtatcttccacttctaggccagccaattgcattgtacagtttctacactttctccaagatgcctcaggtgaaggaaattattgttgtatgtgatccttcttatcaagacatttttgaagatgccaaagagtatatccaagtcgacttaaaatttgcattgcctgggaaggaaagacaagattctgtatacagcggacttcaggaagttgattcaaactccaaactcgcatgcatccatgactctgcaagacctcttgtacaaattgaagatgtagaaaaggtcctgaaggatggttggctggttggagcagcagttcttggtgttcctgccaaagctacaatcaaagaggcaaacagtgaatctttcgttgtgaagactcttgacaggaaaacactttgggaaatgcagacacctcagataatcaaacctgagttgcttaagaagggtttcgagcttgtcaacagggaaggacttgaagtaacagatgatgtatcaatagtggagcaccttaaacatccagtatatattactgaaggctcttacactaacataaaggttacaacgcctgatgatttgcttcttgcagaaagaatattgaatattgaagaatcttagggttttcaattttcttaggctttttttttgttcaaacattataattccctggaaatttgtattctgaataggtgaagttaaccttccacaagagttcctcagaaaattgagtcttgtaaacttattggcaaaagaaagcaacattcttttcaaggttttcagctcatgactgagactttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="35151" stop="40897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35451" g_stop="35716" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="282" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35717" i_stop="35798" i_length="82">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35799" g_stop="35876" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="360" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35877" i_stop="36110" i_length="234">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36111" g_stop="36166" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="416" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36167" i_stop="36730" i_length="564">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36731" g_stop="36810" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="496" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36811" i_stop="36972" i_length="162">
            <donor d_prob="0.578" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36973" g_stop="37055" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="579" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37056" i_stop="37809" i_length="754">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37810" g_stop="37887" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="657" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37888" i_stop="38128" i_length="241">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38129" g_stop="38197" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="726" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38198" i_stop="39113" i_length="916">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39114" g_stop="39182" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="795" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="39183" i_stop="39253" i_length="71">
            <donor d_prob="0.767" d_score="1.00"/>
            <acceptor a_prob="0.016" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="39254" g_stop="39300" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="842" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="39301" i_stop="40155" i_length="855">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="40156" g_stop="40246" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="933" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="40247" i_stop="40355" i_length="109">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="40356" g_stop="40597" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="934" r_stop="1175" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-U566797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1159</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35451" e_stop="35716"/>
          <exon e_start="35799" e_stop="35876"/>
          <exon e_start="36111" e_stop="36166"/>
          <exon e_start="36731" e_stop="36810"/>
          <exon e_start="36973" e_stop="37055"/>
          <exon e_start="37810" e_stop="37887"/>
          <exon e_start="38129" e_stop="38197"/>
          <exon e_start="39114" e_stop="39182"/>
          <exon e_start="39254" e_stop="39300"/>
          <exon e_start="40156" e_stop="40246"/>
          <exon e_start="40356" e_stop="40597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCATTTTCAGTTTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAGGTTATGTGTCATGTGATGTAAGATCTTCTATTTTTTCAGTGAAAAATTGAATCTTGAACATTGGCATTTTTTATATCGTCAGGAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGTGTAAGTTAAATATGAGTTTAAGAGGGAAATAACTTATTTTGTTGTTTCCTATTACTTGTAATTCTATTTTCATTGTTTGTATTGTTTGGTTCATCTAAAATTTGATGCAGAAGGTCTCTAAAAACTGTTCTGTTTTTCAATTCTTTGCATCTTTCATTCCCATATCTTCAATATCTACATTGTTAAAACTTTCTTCTGTCAGATGATGATGTTGTTATGTTTTGTTTGGAATAGGCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAGGTAAAAGTAATGGTCAACTTGATTCAATTATGACTAAACCTATCTAAAACAAATTTCCTAGTGCTAGACAGTAGACATAAGTTACATCTTGATACTTCTATAATTTATGCTGTGGCGAGAAATTGTTAAGTTTGCACGAATTCACCTTGGAAAATTGATGAATATATCGAAGAAGGGTTTAGCTAATAACGCCACGAAATTGGTAGTCATTAGCAGGACCTCTTTTCTTCGATTGAGTTGGTTTGATATTTGACATAATCTGTGTGAGACTGGTGCAAGTCAAGATGGGTAATCAGAAGAGAGATGGTCTACTGCAAGTCTTGAACACTGATGCTATTGAGTTCTGTCTATCAATTCTCAGAAAGTTTTCTGAACTGTTAGACGACCAAACCAAGGACCCCCATGTTTATTTTACACAAGTATTGGGCACCACAAAAACTAAATCCATTTAATGTAGAAATTTAACAGTTTTGGAACCACAGTTTGGAGAGAATCTTTTGTATCTACTCAACCAGTTCGATCACATATTTGACTTTGTGGTGACAATTTGTTGGATTGTTGCAGTTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAGGTATAGAGTTAAAATGTCTTATAGTGTGTGTGTGCAGCCAATAGAAAAATGTCCAAGAAAGCAATGAATGTGAACTTACCTTCCTTATTCTGATTGCAATATCTATAGGAATTTGTGCAAACACTAAGGTAATGATATAATAATTCTTCATTTATTTTTTAGATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAGGTACGTGCTGTATGCTAACTCAAATTGTATAGGTATCTCACTTCCAATTTTCAAAAAACAAAGTTGGTTATGTTCGAGAACTTAATTTTTCTATAATTTACCAAGAGCCTTTTTTCAGCCTTCATTCTCCAGAATATGTAGTTAGCCAAATATTCAGTCCTATCATGATTGGTTATACTTAGTAGATCACTGGGCTGATGTTCAGTAAACTTGGGTTCTGTTGCTGATTTCATACAGTATACTTCATGTAGGAAAAGTTATTAACTAGTTATCTAGTTGTTCCTGCTTCATTTGGTTCGTCTAAGGTGCTAAAACTGTTAGGCTCTTATGTGATCAGTCCTCGCTGCTCAGTTTTTGTCCTTAAGATTCTTTTATCTCTTTTCTTATCCAAATAAGAGTGATAAGTTGATCTCATTCCAAATGCTATTGAAATGTTTGACTTTTTAGGGAGAACAACAAGTGGCTAAAAGCTTAAACTCAAGAGTTACCTTTTGCATTGCATTTCATCTTTCTTTGGTGATTTGGATGTTAACATGTGATCTTGAGTTATTATTGTTCATTTAATTTCTGGTCAAATGTCTTGCATTCACTCCATAGTTAAAGATGAACTTGTGAAATATCTTCATCTTATTTGGTTCCACATATTGTTCAGATTTGTGTCGTTATTATGTTATGCAGTAAGACAATGTTATGGCCATGGTATTTCTCAGTAGTGATTGTGGTTTTTAGAAAGTGTTGATGCTTTGCATGCCAGGAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAGGTTTGATCATTGCATAATCTCCTCCTCCTCCTTTAGTCTCTTGGCTTTGGCAAGAGATTTCTGGTATTGTGGGAAGTACTCCTGCCGAATATAACATGAATTCTGGAGATATCCATCTTCTTTATCTTTAATTCTGCATCACATTATATGCAGATCGTTGACATTTTATAAAGGTCATATGTATGTTTAAGATTCTGAAGGACAAATCTTCCTTTACTTTTTCCAAGAATCTTCTCTGCAGGTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAGGTAGCTCTTAATTATTGCTAGTATCTGATTTGTAATAAAATATGAAGCTTCAGGTGGCTGACCATCTCCCATGAGAGAATGAAATGGTAGCAAATTGAAGCATGTTCTGAGTTTTATGTAGCCTTTTTGTAAGTAGATATTCAAGCTTATAGTTTCCTGTTAGAGACATCAACTTATATTTCTAAAGCAACTCCCGTACAAGGAAGGACAATGTACTATGAGACTTGCTCTTTTTGCTATCTTGGCAGGCTAATTGCTCTAGGCTTTTACTGTGGAACTATTAGGATGTCGTGTAACCTATGTTCTATTTCATCTATATCGATATTGCATAATCTCCTAAACATGTTTCAGGTGCTTCTAAGTTGTAGCATGGTACTATTAAGTCTCAATTTTGGTCAATAGATTTTCACTTTTATTATTTACTAGTATGCATTATCCTATTATCACCAAATGGTTATATCTGTTTGATATTTGTTTAATAAGAAGTATTTTTAGGCTGTCCTACAGTTGCTGTCTAGTATTATTTCTCCTTTAATTTCTCTTGTTGACAGAAATTAACGTTGGCATTATAGTTCTATTAAACATTTGGAGGGAGATAAAATGCATACTTATTCAGTTATATAATATGAAAAGTAAGACCACATTTTATAATACCCTGCAGGACCTTCATTATCCGTGCTTTAAATATGATGGCCAGATAAAATTAAGGCATTTGCTAGGAAATTTAAATATAGCCCTCTATCTCTCACCTCCCCTATTTGACCTGACTGGCATGAATGTAAAACTGTTGACAGGAATGTTAATAAAGCCTCTATTTAAGTGCATTGGCATCGCACAGAAGGTCTCCCTCCTTATATTATATCACTTTTACTTGGTTCTGATTGGTCTATTAATTTTCATGTCAATTCTGGTGCAGGCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAGGTAGTAAGCCTTTCTCTTTTAGAATTTTTTCTGCAGTTGCAGAGACCGTTAAACAATTTTGTCTGGCACAGATAATCAAACCTGAGTTGCTTAAGAAGGGTTTCGAGCTTGTCAACAGGTAGTCCTATATTCACGTCTCTAACAAATTTTGACTTTCAATATTCAATAAGCTTGTGCTTCTTTATTAGAGTTTCAATGTCTAGTATGTTGTCCAATAATTTTATCATGATTATGCATAGAACATAAGTTTTATTGTTGAGAAGTTTGAGAATGACAGGCAGTTTGAAGCATGTCATTTAAGTTAGTCGGCATGATATTTCAACTTTCTTTTCTAGGTTAGAGATGATAAGCCTGGGCCAAGTGGGGTTAGAAACAAATTAGTTCTCAAGACTTGTACATCTTTATTAGGGCCTTTGATACTGTTACTTGATTGAAGATAGTGCTACATTTTCTTTTTCTTTTTCTGGCAAGGACACCACAGTTATTTAAAGAGCAAAATTGTTCTACATTTTTATATTAGAGACACCTTTTTAATTTGGATAATATATGGATACTTCCCCCATCACCCGCCAGTTAAGTTTGTTGCACTTATCTCTGGACCTTTCAAAATACACCCATAACCTCCTCAACTATGATGGACCAAAGTTCATTGTTGGTTTTCGCTCGAGTAACTAGTAGGTCTCTCACCTAGCATGAGGGTAAGACTGGTTCTAGGTCACGTTCCTTTCAAAAACACCAAACTCTAGACCAAAATAAACTTAATGAATTGAGAATATAACGAAGTCCAAGAGAAAGTAAAGGATCAGGCAACTTGAAAAGAAAAGAAAAAGTGTCAGCACATCCATCTGCCACTCTTTATCTCCATTAAATGGAAGAAAGATGAATTAATGGGGCAAACTGAAAAGGAAAAAGAAAAACGGAGGATATAAACAAATATTACCCTGCTTATTTTGTGTTTCATGTGGTCTTTTAGGGAAGGACTTGAAGTAACAGATGATGTATCAATAGTGGAGCACCTTAAACATCCAGTATATATTACTGAAGGCTCTTACACTAACATAAAGGTAGCCAACTAAACATATCGTCTTTTTGGCTCATAGTAGTATCCTCTCTACTGCACTTTGAGCTGCTTATGGATGCGTCAATATATTCAAATGTTGTTATGATATGCAGGTTACAACGCCTGATGATTTGCTTCTTGCAGAAAGAATATTGAATATTGAAGAATCTTAGGGTTTTCAATTTTCTTAGGCTTTTTTTTTGTTCAAACATTATAATTCCCTGGAAATTTGTATTCTGAATAGGTGAAGTTAACCTTCCACAAGAGTTCCTCAGAAAATTGAGTCTTGTAAACTTATTGGCAAAAGAAAGCAACATTCTTTTCAAGGTTTTCAGCTCATGACTGAGACTTTGAC</genome_strand>
        <mrna_strand>TTCATTCATTTTCAGTTTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAG..................................................................................GAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGT..........................................................................................................................................................................................................................................GCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAG..................................................................................................................................................................ATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAG.................................................................................................................................................................................................................................................GTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAG.......................................................................ATAATCAAACCTGAGTTGCTTAAGAAGGGTTTCGAGCTTGTCAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGACTTGAAGTAACAGATGATGTATCAATAGTGGAGCACCTTAAACATCCAGTATATATTACTGAAGGCTCTTACACTAACATAAAG.............................................................................................................GTTACAACGCCTGATGATTTGCTTCTTGCAGAAAGAATATTGAATATTGAAGAATCTTAGGGTTTTCAATTTTCTTAGGCTTTTTTTTTGTTCAAACATTATAATTCCCTGGAAATTTGTATTCTGAATAGGTGAAGTTAACCTTCCACAAGAGTTCCTCAGAAAATTGAGTCTTGTAAACTTATTGGCAAAAGAAAGCAACATTCTTTTCAAGGTTTTCAGCTCATGACTGAGACTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565170" ref_strand="+" ref_description="SGN-U565170 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157354328|emb|CAO46929.1| (e_value=1e-153) unnamed; (*ATH) AT2G02480.1 (e_value=2e-131) | Symbol: None | DNA polymerase-related, weak similarity to DNA polymerase III holoenzyme tau subunit (Thermus thermophilus) GI:2583049 | chr2:660742-665634 FORWARD | Aliases: T8K22.22, T8K22_22; ">
      <seq>gagatttgattgctctaaatgcagatggatcacttcgagatgcagaaactatgttagaccagctcagtttgttggggaaacgaatcactacctctttggttaatgatctgattggtgtggtttcagatgagaagttactggaacttttagagctagccatgtcatcagacactgcagaaacagtgaaaagagcccgggaattgttggattcaggtgttgatccaatagttttgatgtctcaattggctactctcatcatggatataattgctggaactcatccaatacttgatgcaaagcaaactgatatctctggcggtaaaagtttgaacgagacagaactggatagattgaagcatgcactaaagcttctttctgaggcagagaaacaactaagggtttcaagtgaacgttcgacttggtttacagcaaccctgctgcagttgggttctgccacttcactagatcgaactcattcaggaagcagtcacaggctgagttctaagacaacagaggaagatccttctagtacatctagagaagctatatccctgaggcagagaactgatattcaccatgcaccatgtaagtcaggttctccctcatcttttgcgaaagccaaccgtcgaaactcagcaagtagagaattgacactttcatcaatgaatggggagccattgggtggtccacataatgacactaaggacagcaagacagcatctaggtgccccaacacaaacgtgttggatgatatctggatcagatgcattgataaatgccactccaacactttgaagcaattgcttcatacttgtggaacacttctgtcgatctctgaagttgaaggtggttttgttgctcatattgcctttcgtgatagcaagggtaaattgagagcagagaggtttcttagcagtatcacgaattcatttgaaactattttaaggagcaatgtagagggtagacttgttctgctaccagatgcggagacatctgatgacagtggaaagccaattacattgatcaattctggaggtttgaaacagatgggttcgcaaaataatatggtgaagagggaaatagcagttagctcaaatcaggatccgctgcaggtatcaagaagtagctttaatgatcctgaaagcaagatggttgaaacttttgagtcagcaagtggaaatgctggaacgagtagttctaaagagagaatctcagaaattccagtgcagagaatagaatccatcatacgtgagcagaggttagaaacagcatggttacaagcaatggagaaaggcactcctggatcaatgagtcgcctgaaacctgagaggaaccaagtcctgccacaagatggtctttatcataacaaccaactagaaccaattaattcaagggaactgttctcccagcattggcatgatgatctaaatgaggaaattagaagtctgaagatgattgacggaaaggctgttcagaaggatcaaaccagtaaaaagggcgacagttatcccatttcaccaagtttgttgcataatggcatatatggcagtaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="45244" stop="41643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44945" g_stop="44836" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44835" i_stop="44749" i_length="87">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44748" g_stop="44532" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="327" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44531" i_stop="43979" i_length="553">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43978" g_stop="43460" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="846" r_length="519" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43459" i_stop="42652" i_length="808">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42651" g_stop="41943" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="1555" r_length="709" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U565170" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44945" e_stop="44836"/>
          <exon e_start="44748" e_stop="44532"/>
          <exon e_start="43978" e_stop="43460"/>
          <exon e_start="42651" e_stop="41943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTTGATTGCTCTAAATGCAGATGGATCACTTCGAGATGCAGAAACTATGTTAGACCAGCTCAGTTTGTTGGGGAAACGAATCACTACCTCTTTGGTTAATGATCTGGTGAGTTTGATGTGTTTGTTTACACCTTTTCCATGCTTTCCATTCATGGCATGAAACCTTTTTCCTGATATTTCTTTTGTTCCCTAGATTGGTGTGGTTTCAGATGAGAAGTTACTGGAACTTTTAGAGCTAGCCATGTCATCAGACACTGCAGAAACAGTGAAAAGAGCCCGGGAATTGTTGGATTCAGGTGTTGATCCAATAGTTTTGATGTCTCAATTGGCTACTCTCATCATGGATATAATTGCTGGAACTCATCCAATACTTGATGCAAAGCAAACTGATATCTCTGGCGGTAAAAGTTGTAAGTAGCATATGTTCACCTTTAAATTCTGTCTTTTCTGTTTGATCTCTTATTCACAAGCTTCGACTTATATTTTGCAAAAGACACTAGATTTATGCTTCTGATTGCAATTTCAGTACCTCAAAACCTATCAAATTTTGCCTGACCTTAGCCAACCATGTGAAATCACTTGATTTACTTCAATTTACGATGTAGTCTTATAAGAAAAATGCGGTTGCTCAAATTAGCCTGTGAAATTGGTTGAGAGGAAAAGGTTACATCATGGACTGTCTAATTTAGAACCTGTCAATTGCGTAGAATACGGTTATTTTACACACTTGTTCAAGTTTCTTAAGATGTTCCCTAACTTTTTGAGACATTGAAAATACAAATGTGAACTGCAAATATGGCATGCTTAATAGTTAATAGGATGGTAATGTATTATCTCAAAAAATTATAGGAAGGTAATGTAACTTCATGTGAAAAAAAGGATGTTTTTTCCTAGGTTATCAGATTTCAATTGTGACTTCTTTTTCAAATACTCACTAAAATTGCTGGGATTCTCACCTGTCAGTGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCCACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGATCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCATGTAAGTCAGGTTCTCCCTCATCTTTTGCGAAAGCCAACCGTCGAAACTCAGCAAGTAGAGAATTGACACTTTCATCAATGAATGGGGAGCCATTGGGTGGTCCACATAATGACACTAAGGACAGCAAGACAGCATCTAGGTGCCCCAACACAAACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAGGTAAATTTCTCTTGCTCCACAATTGTAGGACTGAATTAGGTCTTCTGGTTCTCTTTTTGATCTTCAGCTCTCACAATTGTTAAACAGTTGACATAATAAGGAATACACAATATTTTGAACTGCATTGTGTTAAACTTGAAGCTGAACCCGAATCTTTACAGAATTTAGTTAAAGGTAGAGGAAACTTGGGATGGAAGGGCTGTGGGCACTTAAATTGACTTATTTTCTGCTTGCTGTACAGAATGTCATATAGTATGCTAAACCAATTCTTAAAATATAAAGCTATGCTAAACCAATTCTTAAAATAGTTTAGACCAAGATTATTTTATTCTGTTGTAAAACTTTTGAAGGGGAACTGCACTTTTGTTGTAGTACACCTGTGGATATATAGACTCAAGTTACCAGTTTCAAAAAAAAGATAAAGCTTTTGAAGGCGGAACAAAAAACTCTCAAGACTCAAGTTAGTGATATTTGAGACTTAAAGCTGCTAGGTATATAATCTAGTCAAATTAAACTTTTTGATGTTGAACTAATTGCAATCGGATTGAATGACCAAAATAGCTTTGTCTCTAAGATGCTAATAGGTATCTTACCATTGATCAGCTAGGTCAAAATAGAGTGCCTCTAATTTCAAGGATAGGAGAAAGATCAAGGTTAAGTTCAACATTTTTCTATTTCTGTATCTTACAAGGAAGAAATCTATTTGTGGGTTCACTAATAATGGTGATGCAATCTACTCATTCAACTTAGACACTACTGTGGAAAGCTACTACTATGACTAATCAATTGTTTGGACCTATTGTCTCAGGTGGTTTTGTTGCTCATATTGCCTTTCGTGATAGCAAGGTTAAATTGAGAGCAGAGAGGTTTCTTAGCAGTATCACGAATTCATTTGAAACTATTTTAAGGAGCAATGTAGAGGTTAGACTTGTTCTGCTACCAGATGCGGAGACATCTGATGACAGTGGAAAGCCAATTACATTGATCAATTCTGGAGGTTTGAAACAGATGGGTTCGCAAAATAATATGGTGAAGAGGGAAATAGCAGTTAGCTCAAATCAGGATCCGCTGCAGGTATCAAGAAGTAGCTTTAATGATCCTGAAAGCAAGATGGTTGAAACTTTTGAGTCAGCAAGTGGAAATGCTGGAACGAGTAGTTCTAAAGAGAGAATCTCAGAAATTCCAGTGCAGAGAATAGAATCCATCATACGTGAGCAGAGGTTAGAAACAGCATGGTTACAAGCAATGGAGAAAGGCACTCCTGGATCAATGAGTCGCCTGAAACCTGAGAGGAACCAAGTCCTGCCACAAGATGGTCTTTATCATAACAACCAACTAGAACCAATTAATTCAAGGGAACTGTTCTCCCAGCATTGGCATGATGATCTAAATGAGGAAATTAGAAGTCTGAAGATGATTGACGGAAAGGCTGTTCAGAAGGATCAAACCAGTAAAAAGGGCGACAGTTATCCCATTTCACCAAGTTTGTTGCATAATGGCATATATGGCAGTAATTT</genome_strand>
        <mrna_strand>GAGATTTGATTGCTCTAAATGCAGATGGATCACTTCGAGATGCAGAAACTATGTTAGACCAGCTCAGTTTGTTGGGGAAACGAATCACTACCTCTTTGGTTAATGATCTG.......................................................................................ATTGGTGTGGTTTCAGATGAGAAGTTACTGGAACTTTTAGAGCTAGCCATGTCATCAGACACTGCAGAAACAGTGAAAAGAGCCCGGGAATTGTTGGATTCAGGTGTTGATCCAATAGTTTTGATGTCTCAATTGGCTACTCTCATCATGGATATAATTGCTGGAACTCATCCAATACTTGATGCAAAGCAAACTGATATCTCTGGCGGTAAAAGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCCACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGATCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCATGTAAGTCAGGTTCTCCCTCATCTTTTGCGAAAGCCAACCGTCGAAACTCAGCAAGTAGAGAATTGACACTTTCATCAATGAATGGGGAGCCATTGGGTGGTCCACATAATGACACTAAGGACAGCAAGACAGCATCTAGGTGCCCCAACACAAACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTTGTTGCTCATATTGCCTTTCGTGATAGCAAGGGTAAATTGAGAGCAGAGAGGTTTCTTAGCAGTATCACGAATTCATTTGAAACTATTTTAAGGAGCAATGTAGAGGGTAGACTTGTTCTGCTACCAGATGCGGAGACATCTGATGACAGTGGAAAGCCAATTACATTGATCAATTCTGGAGGTTTGAAACAGATGGGTTCGCAAAATAATATGGTGAAGAGGGAAATAGCAGTTAGCTCAAATCAGGATCCGCTGCAGGTATCAAGAAGTAGCTTTAATGATCCTGAAAGCAAGATGGTTGAAACTTTTGAGTCAGCAAGTGGAAATGCTGGAACGAGTAGTTCTAAAGAGAGAATCTCAGAAATTCCAGTGCAGAGAATAGAATCCATCATACGTGAGCAGAGGTTAGAAACAGCATGGTTACAAGCAATGGAGAAAGGCACTCCTGGATCAATGAGTCGCCTGAAACCTGAGAGGAACCAAGTCCTGCCACAAGATGGTCTTTATCATAACAACCAACTAGAACCAATTAATTCAAGGGAACTGTTCTCCCAGCATTGGCATGATGATCTAAATGAGGAAATTAGAAGTCTGAAGATGATTGACGGAAAGGCTGTTCAGAAGGATCAAACCAGTAAAAAGGGCGACAGTTATCCCATTTCACCAAGTTTGTTGCATAATGGCATATATGGCAGTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603751" ref_strand="+" ref_description="SGN-U603751 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157352770|emb|CAO44585.1| (e_value=9e-55) unnamed; (*ATH) AT3G02760.1 (e_value=4e-47)  Symbol: None | histidyl-tRNA synthetase, putative / histidine--tRNA ligase, putative, similar to SP:P12081 Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA ligase) (HisRS) {Homo sapiens}; contains Pfam profiles PF00587: tRNA synthetase class ... ; (*SWP) sp|P93422|SYH_ORYSJ (e_value=2e-45) Histidyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os05g0150900; ">
      <seq>attggtacatttgtcaaatggaggggacctccagtggaattattatctaagctcaagcaagaacgtagttttctggagaacaatgaatcttcacttgctttggatgaattagagattatgtttaaagctctggagaagtccaagtgtattgacagagtggtttttgacttgagccttgcaagaggccttgattactacacaggagtcatatttgaagcagtcttcaaaggagctgctcaggttggttcgattgctgctggtggacgttatgacaacctgatagggatgtttgggacacggcaggttccttctgttgggatcagtctgggaatagagagagtatttgcaatcttggaacagcttcagaaagacaaaaatcaggaaattcgagccactgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="54159" stop="52105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53859" g_stop="53620" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53619" i_stop="53004" i_length="616">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53003" g_stop="52863" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="381" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52862" i_stop="52426" i_length="437">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52425" g_stop="52405" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="402" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U603751" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53859" e_stop="53620"/>
          <exon e_start="53003" e_stop="52863"/>
          <exon e_start="52425" e_stop="52405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTACATTTGTCAAATGGAGGGGACCTCCAGTGGAATTATTATCTAAGCTCAAGCAAGAACGCAGTTTTCTGGAGAACAATGAATCTTCACTTGCTTTGGATGAATTAGAGATTATGTTTAAAGCTCTGGAGAAGTCCAAGTGTATTGACAGAGTGGTTTTTGACTTGAGCCTTGCAAGAGGCCTTGATTACTACACAGGAGTCATATTTGAAGCAGTCTTCAAAGGAGCTGCTCAGGTAGATCTCTGGGTTAGCTAATAAGTTCTAGTTCCAGTTACCTATGCTTTGCGACTTTGGCTTGTCAATGTGGTGGTTTTCAATTCATAGTTTGTGCATTTATGCATCATAGATGTACATATTAATGGTTTGAGTTCTCAACATTATTTTTTTAGGCGTCTAAGAAGTATATATAAACTGTACAAGTTATCAACATTATCTGGAGCCTAAAATATCTCAAGTACTTTCAATAATATTTGCTTTGACTTCCGTATTACTGAAAGTCAATCTAATATTGGAGTAACCAGTGTACATTATTCTAGTTTCTTCTGTCTCGCATACTATGTTCAGAGTTAAACACTGTAAATTGGCTCTTCCCAAGGCGAACAGCAGGTTCTCAAGCCTCCAAGTGTGGCCTTGTTTAAATGTCTTCTGCATCACTATTACTTGATAAAAGACCTCCATCTGTAGTATCGAATTTGATAGTGAAGTTCTAGTAGTTTGATTATGGCATAGACCTATATATAAGTCTCGGTTCCTACTGCTCTGTTTCTCCTATTATATGTGTGTTTGCATGAAATGTTTGTAAATTGTAGTTTTCTGTGATCGCTTACCACTTGTCTGGAAATGCCTGCAGGTTGGTTCGATTGCTGCTGGTGGACGTTATGACAACCTGATAGGGATGTTTGGGACACGGCAGGTTCCTTCTGTTGGGATCAGTCTGGGAATAGAGAGAGTATTTGCAATCATGGAACAGCTTCAGAAAGACAAAAATCAGGTGAGAATAGCTAAATAAGCATATCTGATTTGTTTTGAAATAGACTTTGGTAGTTTTCATCTTTTTCAACTTGTTGCACGTCAGTCCTCTTGAGCCTTTTTAAAGATTATAGATGAAACAGTTCACATAATTCAATATGGTCACAAAGCGGTAAAACTGATACTACGACAAATCTACTAAAGACTAGATGAATGTCCCTAGCATTCGTGGTGCACATTGTTCTGTTTTACTTTTTTTTTTTTAAACTTATCCGCTCCATGGCAAATGATGTCTTCATTTCTGAAGATGTCCTAAATTTGTTGCATAATGCTAGCTCCATTTCATTACTACCTATTATTTTCTAAGCTCCTCCCTCTTTTCTCTCTCTCTCCATGTTTTTCTCTGGAAGTGTTAACTTATGCACAATGTGTCATTGTTCTCCTTGAACAACTTTCCAGGAAATTCGAGCCACTGAAACT</genome_strand>
        <mrna_strand>ATTGGTACATTTGTCAAATGGAGGGGACCTCCAGTGGAATTATTATCTAAGCTCAAGCAAGAACGTAGTTTTCTGGAGAACAATGAATCTTCACTTGCTTTGGATGAATTAGAGATTATGTTTAAAGCTCTGGAGAAGTCCAAGTGTATTGACAGAGTGGTTTTTGACTTGAGCCTTGCAAGAGGCCTTGATTACTACACAGGAGTCATATTTGAAGCAGTCTTCAAAGGAGCTGCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTCGATTGCTGCTGGTGGACGTTATGACAACCTGATAGGGATGTTTGGGACACGGCAGGTTCCTTCTGTTGGGATCAGTCTGGGAATAGAGAGAGTATTTGCAATCTTGGAACAGCTTCAGAAAGACAAAAATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTCGAGCCACTGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571884" ref_strand="+" ref_description="SGN-U571884 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>gtagaaacaagaagattccaatcgcactcaagcccaagtgtaacgcaaaacaaaacaaaccccaaaactcttgggttgaaacccatttgcaaaacctaattcccaaaattccgtttctgcagcccatttcccccccaaaaaaccctcaatccgtcaccttctaaacccccattaatcccttcgccggcgattttgccggaaaacccaacatcatctttctgattcggtgacccatggcggaagagagacgcatggttacagtgggcggaaaaggctcatcactgtcatcttcctctgtatttgatattgccaatgggctcagtcgtctgagcatagactcttcagcactctccaaagtatcgtcttcctccaatgctaaaaccagcaagactaatgcgcctacggtgtctgcatcattttcaatcctcagtaatttaacatccgatgaggctagagcttctctcgtggtcctgctcaacaagcttttgctttcttcttccacttctgcagctgttaatcagctctctgatatcatccttaaggatgtattgtcgtcctctaatgtgcaaatttcgtttgataacactattgatggcgtttctccgggtgatttttctgtggcagcaatagctggaatctccgctatcttggatcatcgaagttcagctttgtctgttattactgatgctattgctgccttgtcctgcgaggccttgggggctganntttcanctttcaatttnaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="59160" stop="57813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58861" g_stop="58113" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U571884" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58861" e_stop="58113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAAACAAGAAGATTCCAATCGCACTCAAGCCCAAGTGTAACGCAAAACAAAACAAACCCCAAAACTCTTGGGTTGAAACCCATTTGCAAAACCTAATTCCCAAAATTCCGTTTCTGCAGCCCATTTCCCCCCCAAAAAACCCTCAATCCGTCACCTTCTAAACCCCCATTAATCCCTTCGCCGGCGATTTTGCCGGAAAACCCAACATCATCTTTCTGATTCGGTGACCCATGGCGGAAGAGAGACGCATGGTTACAGTGGGCGGAAAAGGCTCATCACTGTCATCTTCCTCTGTATTTGATATTGCCAATGGGCTCAGTCGTCTGAGCATAGACTCTTCAGCACTCTCCAAAGTATCGTCTTCCTCCAATGCTAAAACCAGCAAGACTAATGCGCCTACGGTGTCTGCATCATTTTCAATCCTCAGTAATTTAACATCCGATGAGGCTAGAGCTTCTCTCGTGGTCCTGCTCAACAAGCTTTTGCTTTCTTCTTCCACTTCTGCAGCTGTTAATCAGCTCTCTGATATCATCCTTAAGGATGTATTGTCGTCCTCTAATGTGCAAATTTCGTTTGATAACACTATTGATGGCGTTTCTCCGGGTGATTTTTCTGTGGCAGCAATAGCTGGAATCTCCGCTATCTTGGATCATCGAAGTTCAGCTTTGTCTGTTATTACTGATGCTATTGCTGCCTTGTCCTGCGAGGCCTTGGGGGCTGACATTTCAGCTTTCAATTTGAATGAT</genome_strand>
        <mrna_strand>GTAGAAACAAGAAGATTCCAATCGCACTCAAGCCCAAGTGTAACGCAAAACAAAACAAACCCCAAAACTCTTGGGTTGAAACCCATTTGCAAAACCTAATTCCCAAAATTCCGTTTCTGCAGCCCATTTCCCCCCCAAAAAACCCTCAATCCGTCACCTTCTAAACCCCCATTAATCCCTTCGCCGGCGATTTTGCCGGAAAACCCAACATCATCTTTCTGATTCGGTGACCCATGGCGGAAGAGAGACGCATGGTTACAGTGGGCGGAAAAGGCTCATCACTGTCATCTTCCTCTGTATTTGATATTGCCAATGGGCTCAGTCGTCTGAGCATAGACTCTTCAGCACTCTCCAAAGTATCGTCTTCCTCCAATGCTAAAACCAGCAAGACTAATGCGCCTACGGTGTCTGCATCATTTTCAATCCTCAGTAATTTAACATCCGATGAGGCTAGAGCTTCTCTCGTGGTCCTGCTCAACAAGCTTTTGCTTTCTTCTTCCACTTCTGCAGCTGTTAATCAGCTCTCTGATATCATCCTTAAGGATGTATTGTCGTCCTCTAATGTGCAAATTTCGTTTGATAACACTATTGATGGCGTTTCTCCGGGTGATTTTTCTGTGGCAGCAATAGCTGGAATCTCCGCTATCTTGGATCATCGAAGTTCAGCTTTGTCTGTTATTACTGATGCTATTGCTGCCTTGTCCTGCGAGGCCTTGGGGGCTGANNTTTCANCTTTCAATTTNAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580726" ref_strand="+" ref_description="SGN-U580726 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|63028790|gb|AAY27262.1| (e_value=2e-108) putative alfin-like transcription factor [Solanum tuberosum]; (*ATH) AT1G14510.1 (e_value=5e-93) | Symbol: None | PHD finger family protein, contains Pfam domain, PF00628: PHD-finger | chr1:4961882-4964420 REVERSE | Aliases: F14L17.29, F14L17_29; (*SWP) sp|O81488|Y5621_ARATH (e_value=1e-81) PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210; ">
      <seq>gctttcttcatgctcttctctctctctctctatatatccgtttcttacaatttctctacttgcttctaacaatttctcatgaaaatttgagcttttcactttatgaatcttcatttttcacagcacatagcaagctatttttaaagttttgggcaacatgaagaggaaaccctagttctttggggaaaaaaccctaattttcttgttttttttcaaagactcgatttttttcttgtggggttgttaaaaattgagtgaagagaaggataatatggaaaatacggtacctaggactgtagaagaagtattcaacgatttcaaaggtcgtagagctggtttaattaaagcactaactacagatgtcgagaagttctatcagtcgtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctccctgttgaggaggtgcctccagaacttccggagccagcattaggcataaactttgcacgtgatggaatgcaagagaaagactggttatcacttgttgctgttcatagtgattcatggctgctttctgttgcattctactttggcgcacggtttgggtttggcaagagtgaaaggaagaggcttttccaaatgacaaatgatctcccaacagtgtttgaggttgttactggagctgctaagcaggcacgcgatgccgctcacaacaatagcagcaaaagcaaatcaagtggaaagcctcgacagccagagccccagcccaaggaagtaaaggtgtctccacctacaatggaggatgaaagtggggaggaggaggaagaagaagaagaagaacaaggggcaactctctgtggagcctgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgtgagagatggttccatggcaaatgtgtgaagattaccccagcaaaagctgagcatatcaagcagtacaagtgtcccagctgcagtagcaagagagctagagtttaaaatttgtgggacttttagatcaacatcaattaagtggagatgttggaaggtctaggacttttagctcagttatcaaatgtaagctatgtcaaagttaaatgtttgctgatggaattgggatgtccatttccatgaacatttgctttctgttatcttgctttcggattgtgttttagatgaaatttgtgcctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="68366" stop="61893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68067" g_stop="67709" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67708" i_stop="67570" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67569" g_stop="67537" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="392" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67536" i_stop="65715" i_length="1822">
            <donor d_prob="0.490" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65714" g_stop="65486" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="621" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65485" i_stop="62875" i_length="2611">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62874" g_stop="62754" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="742" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62753" i_stop="62662" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.663" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62661" g_stop="62193" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="1212" r_length="470" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U580726" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1211</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68067" e_stop="67709"/>
          <exon e_start="67569" e_stop="67537"/>
          <exon e_start="65714" e_stop="65486"/>
          <exon e_start="62874" e_stop="62754"/>
          <exon e_start="62661" e_stop="62193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTTCATGCTCTTCTCTCTCTCTCTCTATATATCCGTTTCTTACAATTTCTCTACTTGCTTCTCACAATTTCTCATGAAAATTTGAGCTTTTCTCTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAGAGGAAACCCTAGTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAGACTCGATTTTTTTCTTGTGGGGTTGTTAAAAATTGAGTGAAGAGAAGGATAATATGGAAAATACGGTACCTAGGACTGTAGAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAGGTTTGTAGTGTTGTTTCCTTTTTTTTTTTCTTAAAATTTTCTTGCACTTTTTATGGGGTTTTGAGCATAATTTCATTCTGGGTGTTCCTGAATTTTGTTGGTTTTTACTAATTATGATGTTCTTAAAAAAATTATGCAGATGTCGAGAAGTTCTATCAGTCGTGTGATCCTGGTGAGTTTTCTGCTGCTCAGTTTTGATGGACTGTTGCGGTCCGTCAATATTCACGTTTGGTTCTTCTGTGCTATGAGCTTGAGCTGTATTTCTAAATGCAGTATATGTCTTGGAGGCTATAGCTTTTAATTTCTGGGACCGTTCTTTGTATTCATATTTTTTCTTCAAATTGCTGCTCTTTTATGTTCTCATTGAGCGATTTGGTTGAGTGATTAATTAGGACTTTGTCACTCTTTAATATTTCAGAATTTTGTAATTTGCTTCTTGTCCCCTTTTTTTTGGGTCACTTTTGTAATTTCAGTGCTGTTTGTCCTAGGGAGTGGCCTAAAATTCATGTTAGAGCTTTCTGACTGTTTACATTAGGGCTGTGTATCGGCTAGTTCGGTTCAGTTTTGAAGTTTATTGGGTTGGCTTATTGGTTATCGGTTTGTAGAGATGCTAAACCGTTATAGAACCATTATGATATTGGCTTTATCGGTTATTGATTTATCGGTTTTTTATCGTTATCGGTTTAACCGTTAAGATTTGACACAAAAGAAAAAACATTGAAAATCATTTAAAAACAAGGTGACAAACCAAATAAACCATGCACTTGAGTTCACAAGTTACATCTTGCTCTAAAGCAAACACTTTTACATTGTAGAATAATCAAGTGTTTGAGACAACCAAAAAATAAAATTAGGAAATTAAACTCCAAGTCGAGAACTTTATATACAAAATGGTATAAATATAATTATTTAATTTACTATTGGGTTACTGGTTAACCCATTAAGAACAAAACTTTAAACCGTTAAGAACCAATAACCCGATTAACAAAAAAAATCAAAATCGTTATCAAAACCACTAAAACAATAACCTAATACTTTTTTATCGATTTGGTTTTGAACAGCCCTAGTTTACATCATTTTGTCATTTGATGTTCTGCTTTGGTGTTATGCAGGAACAGAAAGATCATATCTTTATTGAGTAGTTAATTGTCGCCTTCGATATGAAAGAGTAATTCTTCTGCATTTTCAACAGAATTATCATTATCTAAAACTGCTTTGCAAAACATGATCTTTAAAAATGAGATCATTACTTAGAATTTTATGTCGTTTAGTGAGAGTGTCAGTGTCAGAAGTGTTCTCATCATTGTCTTGATGACTTTTTATCAGTTCTCAAGGAAGAAGAGGTGTAAAGCTTCTTTTATGTAGCAATGAGTCATCATTTCTCTATCACAGTGACACAGTGTCTCCAACCATAATTTATCTTGCTATTTATGAAATTTTTTTGAAGTATTTGATATAGTAGGGGAGCATACTGTGGTTTTATCCCGATTATTTGATTCCTTTCTTCTGTGGAGTTTCTAACTGTTTATACTTATTCGATAGTCTCTGTTAACAACTCTATTTTGAAGAACTGGTCTAAATTCTCTATTGTGTTGCTGTTATTTATTTTGTCCCCATTTATGAAACTGCTTATTATGACCTTTGTGATAATGATATCAATAGACTAATCCCTCTATATTTCAAACAGCTGTGTCAGTCTTTATGACAGTTAGTCTCTTAAATGTTTTTAGTCCAATCAATTACACAGTTACTGAAGGTTTTGTAGATAGTTTATTACGGCCTGGAAGTTGTAAGGATAATTCATTTTTCTCTCGTGTTGCATCATTCTTCTCCCCATCATTTCACAGCTTGCCCTCTCTTTTTCCTTGTTTTGAGGCTTGTTGGGTATTTTCCCTCGTTGGATGTTCAATTCTTGTTTTCTATAGATCACTTATGCAGATCAATTATGAAGTGTTTATGAAAAATTCTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAGGTAGAATAAAATTTGTTGCCAGTAGATTTCACCTCTATCATTTTAACTGTCTTGCAAACTTGGTCATATCCATTGTAATTTCATTTGAATGTGCATGTTTTTCCTGTTTGATGGAAGACATTCGAGGCCTGCGGCTACCTTTTGTCAAACGTAAATTAGTGTTGTGCCATGTGATTCCCTGCTATTAAAATTCTGTGTGGATTACCCGCCCTCCCTTCTAAACTCTGTCTTTGCATTGTCTATTAGGTAGTTTTTGCTTGATTACTTCTTATCTTTTCAGGGGTGGATCTAGTGGCATAAGTTGAGCTACTTCTTTGCCATAGTTGTTCTCCTCATGCTGCTTAAAACTCGTATTTTTTCCTGTAGGAGCTTACTTTTCAGTTTTTGTTGAACTCCATGTTTTTTGTTTTCTTTTGATTTTGCTGCATATACTTGATGCTTATTAATGACTCATCTTACTTGATCAAAAAATAAAATAAAATTCACCTTCGCAATCATTTAGTGCATCTAGAACTTGTGTGCTCCATTGTTCTATTTTAGGGAGATTGGCTTCTGTGGTTGCTGTCCCTCTTTTTTTGTTTCATAGGTGAGATCATTTTCATGAGAAGTCACAGAAGAAATTTAGTCAACAATCATGCTATGAAAATGTGTCTTTTTCGGAATTGTTCCTTTCTAACCCATACATCGACACCTTTTTTTGTCTTCTTTCTTAGCACGTAGTGTTTGACCTGTTTGCTGCTCCTCATTGAGGTATCTTGACCCAACAATCAATCTTTCATGAATTTAGGCCTTATCCAGAACAAATTGGGTTTGATTCACTGTTTTAGCTTCTGTGTCTCCAAGATTCTGTATTTAGAACTCATCATAGTTTGACAATCTTATGCTTGCCATTAATCTACTCCAAATCTTCTCCTTTATCGGCATATGAAAGCTCACATAGACAATGTTGTGCTTGATTGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAAAGCACCAAGAAGTTGCAAATATATTGAGTTTATGACGATAAAACTCTAAACTACAACTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAGAGCACGAAGAACTTGCAAATATATTGAGTTTATGACGATAAAGCTCTAAACTATAATTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGAGAATTGCAGCAGTTAGATTATTTAGGCAATATATAGGAGTCCACCTTCAACCAAAGTTCATCTAGTGTGGCATCTTCAACCTAAGTTCATTTACTCAGTGTTTCATATTCTTTGCGTCATGAAAGATGTCTTATTTCTGTGTCTTGGTGAGCATACTGATAAGATGTTGCAATGTTAATCTTGGTGTGATGAGATCCCAGACATCTTTCATTTTTAGTTTCTACTATAGAATCTGTTTGCTATTACCTTATAAATAAGGATTCTAGATTTGCACCGCCTTTTGTCCTTTCGCTATTCTAGGAAGGTTATTTGGTGCTAGTTGTTAGACAAAAGCAAATCCATTCACTAAGTGGAATTTGTTGTGGCATCATTGAATAAGATAATGTTTGGTTCAGCAAAGGTAGGGATGCCTGACATGTCCAGATGCTTACCATCAGCTGGCGTTTCTGAATGTACTCTCTTTGAATAAAATAGGTGCTCAGCTGAGTGAATAACAGGAGGTCTGACATCTTGAGAGATTTACTGTCATCTGTTATTATTGGCTGTAGGCTGTGCCATCATTGAATATTAGGTACATTCGGGACGGCTCAAATGCTGTATAATGATGGAGAGAAACTTCTAGTAGCAGGTTTTGGTCCCTCTTTTCTACCCTGGAGTCCTCCAACCGAGAAAAATTAGGGGGGTCATTTTGGTTTTGGGTCTGCGACGAATAGGTTCAAGAGATGAGAGAATTAAGGATACCCACCAGAAAGACTAATCCAATCCATAAGGAGGTACCAGAAAATACAACATTTTTGTTACTTGACCAGCCATCAGGAGAAGCAAATACAACGGGTACGCTAATCAATAAGATTAATGAAGTAGCAATTAATGCAAAAACAGCCAATTGGAAAGCAAGAGTCATGCTTTTAATCCTCCAAGCTACCAACAAATGAACTATATACCATTAGACCGTTAGAGAATATTGATGGATGTGAAAATATGACTGAAATCGTCATAAGCTGGAGTTTATACTGGGAAACTGGTTGCATGGGATTCCATAATCATACATACATGTCCAGAAATGTCAACTTAAATTTGACTTATATCTGTCAAGTGTCTGGATGGTTTGTCTAGCTAGAGTCCAATCTCGTTAATGTGCTTTCCTATGTTACTCGGATTCTTCATAAACAGCAATGGGGTGTGTGGGATCCTCCAAGATCAGTGCATTTTTTGGAGGATCTGACACAAGTATGGCATCACTATTGGAGAGTCCGAGCAGCATAGGTGGCTTACGTTGGTTAAATGGTTATCTGATATTAATTTAGTGAGGATAATTGTTTTATTTTGGGAATCATGTATACAGGAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAGGTTCTCATATACTGGACCTAACATATATAGTTACTGTTTCTTTTCCCATTTTGTTTGAGCACATGTTTTCAGCTATTATCTTTGATGTTCAGCCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAGGATGAAAGTGGGGAGGAGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTT-CATGAACATTTGCTTTCTGTTATCTTGCTTTCGGATTGTGTTTTAGATGAAATTTGTGCCTGTT</genome_strand>
        <mrna_strand>GCTTTCTTCATGCTCTTCTCTCTCTCTCTCTATATATCCGTTTCTTACAATTTCTCTACTTGCTTCTAACAATTTCTCATGAAAATTTGAGCTTTTCACTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAGAGGAAACCCTAGTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAGACTCGATTTTTTTCTTGTGGGGTTGTTAAAAATTGAGTGAAGAGAAGGATAATATGGAAAATACGGTACCTAGGACTGTAGAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAG...........................................................................................................................................ATGTCGAGAAGTTCTATCAGTCGTGTGATCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAG............................................................................................CCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAGGATGAAAGTGGGGAGGAGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTCCATGAACATTTGCTTTCTGTTATCTTGCTTTCGGATTGTGTTTTAGATGAAATTTGTGCCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590056" ref_strand="-" ref_description="SGN-U590056 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|63028790|gb|AAY27262.1| (e_value=1e-98) putative alfin-like transcription factor [Solanum tuberosum]; (*ATH) AT1G14510.1 (e_value=2e-88) | Symbol: None | PHD finger family protein, contains Pfam domain, PF00628: PHD-finger | chr1:4961882-4964420 REVERSE | Aliases: F14L17.29, F14L17_29; (*SWP) sp|O81488|Y5621_ARATH (e_value=2e-74) PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210; ">
      <seq>cgctccaatttttctcttcttctccaaatgcaatttgacatagtaattaaggaagaagaagagaatagcagcattgagtacctaggactgtagaagaagtattcaacgatttcaaaggtcgtagagctggtttaattaaagcactaactacagatgtcgagaagttctatcagtcgtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctccctgttgaggaggtgcctccagaacttccggagccagcattaggcataaactttgcacgtgatggaatgcaagagaaagactggttatcacttgttgctgttcatagtgattcatggctgctttctgttgcattctactttggcgcacggtttgggtttggcaagagtgaaaggaagaggcttttccaaatgacaaatgatctcccaacagtgtttgaggttgttactggagctgctaagcaggcacgcgatgccgctcacaacaatagcagcaaaagcaaatcaagtggaaagcctcgacagccagagccccagcccaaggaagtaaaggtgtctccacctacaatggaggatgaaagtggggaggaggaggaagaagaagaagaagaacaaggggcaactctctgtggagcctgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgtgagagatggttccatggcaaatgtgtgaagattaccccagcaaaagctgagcatatcaagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75019" stop="62127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69474" g_stop="69423" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.538"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69422" i_stop="67813" i_length="1610">
            <donor d_prob="0.828" d_score="0.54"/>
            <acceptor a_prob="0.004" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67812" g_stop="67709" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="153" r_length="103" r_score="0.885"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67708" i_stop="67570" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67569" g_stop="67537" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="186" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67536" i_stop="65715" i_length="1822">
            <donor d_prob="0.490" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65714" g_stop="65486" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="415" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65485" i_stop="62875" i_length="2611">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62874" g_stop="62754" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="536" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62753" i_stop="62662" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.663" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62661" g_stop="62427" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="771" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U590056" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590056" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69474" e_stop="69423"/>
          <exon e_start="67812" e_stop="67709"/>
          <exon e_start="67569" e_stop="67537"/>
          <exon e_start="65714" e_stop="65486"/>
          <exon e_start="62874" e_stop="62754"/>
          <exon e_start="62661" e_stop="62427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTACAATTCTTCATCTGCTACAACAATTCAACAGCTTCAATCACATTGCCGTAAGCTGTTTATACCCTGAAAATCGTAGCATTCCAATCTGCTGCAACACTTCTCTAAGGAATTTCATCAAACTGTTGCTGTGCAATCTCCAAAGATCAAAACTTCCCATTCATACCCATAACCGCATTCTGAATGAACCTACCCAACCATGCTCTCTTGGAACAATCTAAGTGATTGACAAGAAGAACAATCCACATACCCAGCAAGTGCACAAACTTTACTATTATTTCGTGGAGACAGAGAAATTATTGACTCACGTATAACAGATGCAAGTAAAAATATCAAGATGAACAATAACGACAACGAAATAATATAAACAACATGTAAATATCAAAAACAAAAATTATAAAAATACGACTAATACTGTAACATACACCAATAATGCTGCACCACTACTTATTTATATATAAATTAAAAAAATAGAACTAGTGAAAAAGCTACTCACGTTAATTCAATATTGGAGTTTGTCTTTACACTTAAATCACCGTCTTGCTATGATTTCATCTGAAAAAATATTGTACGCAACCCAATAGGTACACTTGCTCTCTCACATATATTACAAAACCTTTTCCCTGTTAATTTTTTTTAGCAAAATAAATCAGTACTAGTAACAAACGAATCAGTCAAAACCCTAAAAATTAATTGGGCCCCGTAAATAAAATCACAATAAGATATATTTTTAGGTTAGCAAAATCAACTAACCATAACCCAGCCAGAAAAAAAAAAAAGAAAGATGAAGATTGCTTCCAAAGGAACAATGGTGCATTTGAAGCCGCATCTCAAACCAACAATTCTATTGGACTAGCTTGCGCAATTTCAACTAATTTCATGTGTTATATTCTATCACTCAATTTTATTCGTGAAGATTCAAGATTCTCAAATCATTTTCTATATTTTTCAATACCCTTCGTATTTATCTCATTTAAATAAAAGTAAAACCTTTTTGATAACTATAAAATTCGATTATCGAAAACAAACAAATGTCAAAATCAAAACCCACAAAATGCAAACATCATAGCCTTTTTTTTAACACCTCTGCCTCATCATCATCAAACAAGAAAGAAAAGATAAGAAGATAGAAGAATCCCTCTCCATTGTCCAAGGCAAAATCTTCATCCTAAGTTGTAATAAAATATTCTCAAGTTGGGAGTATTGCTATAATTTAACAACAAATAAAAAGACATTTCACATCAGATTTCTGATCTCTCTCTGCCACAATTTTTTTTTTTCATAATTTTTGAAAGAACCAATAGATCCAAGTACTCGTACACTAGTGCTACATGTATCTATTTACCAAAAAAGAAACTCAAATAAATGCTGCTACTAAAACCCTTTCCCCACCACCCCACTTTCCTCTTTCTTCATGCTCTTCTCTCTCTCTCTCTATATATCCGTTTCTTACAATTTCTCTACTTGCTTCTCACAATTTCTCATGAAAATTTGAGCTTTTCTCTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAGAGGAAACCCTAGTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAGACTCGATTTTTTTCTTGTGGGGTTGTTAAAAATTGAGTGAAGAGAAGGATAATATGGAAAATACGGTACCTAGGACTGTAGAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAGGTTTGTAGTGTTGTTTCCTTTTTTTTTTTCTTAAAATTTTCTTGCACTTTTTATGGGGTTTTGAGCATAATTTCATTCTGGGTGTTCCTGAATTTTGTTGGTTTTTACTAATTATGATGTTCTTAAAAAAATTATGCAGATGTCGAGAAGTTCTATCAGTCGTGTGATCCTGGTGAGTTTTCTGCTGCTCAGTTTTGATGGACTGTTGCGGTCCGTCAATATTCACGTTTGGTTCTTCTGTGCTATGAGCTTGAGCTGTATTTCTAAATGCAGTATATGTCTTGGAGGCTATAGCTTTTAATTTCTGGGACCGTTCTTTGTATTCATATTTTTTCTTCAAATTGCTGCTCTTTTATGTTCTCATTGAGCGATTTGGTTGAGTGATTAATTAGGACTTTGTCACTCTTTAATATTTCAGAATTTTGTAATTTGCTTCTTGTCCCCTTTTTTTTGGGTCACTTTTGTAATTTCAGTGCTGTTTGTCCTAGGGAGTGGCCTAAAATTCATGTTAGAGCTTTCTGACTGTTTACATTAGGGCTGTGTATCGGCTAGTTCGGTTCAGTTTTGAAGTTTATTGGGTTGGCTTATTGGTTATCGGTTTGTAGAGATGCTAAACCGTTATAGAACCATTATGATATTGGCTTTATCGGTTATTGATTTATCGGTTTTTTATCGTTATCGGTTTAACCGTTAAGATTTGACACAAAAGAAAAAACATTGAAAATCATTTAAAAACAAGGTGACAAACCAAATAAACCATGCACTTGAGTTCACAAGTTACATCTTGCTCTAAAGCAAACACTTTTACATTGTAGAATAATCAAGTGTTTGAGACAACCAAAAAATAAAATTAGGAAATTAAACTCCAAGTCGAGAACTTTATATACAAAATGGTATAAATATAATTATTTAATTTACTATTGGGTTACTGGTTAACCCATTAAGAACAAAACTTTAAACCGTTAAGAACCAATAACCCGATTAACAAAAAAAATCAAAATCGTTATCAAAACCACTAAAACAATAACCTAATACTTTTTTATCGATTTGGTTTTGAACAGCCCTAGTTTACATCATTTTGTCATTTGATGTTCTGCTTTGGTGTTATGCAGGAACAGAAAGATCATATCTTTATTGAGTAGTTAATTGTCGCCTTCGATATGAAAGAGTAATTCTTCTGCATTTTCAACAGAATTATCATTATCTAAAACTGCTTTGCAAAACATGATCTTTAAAAATGAGATCATTACTTAGAATTTTATGTCGTTTAGTGAGAGTGTCAGTGTCAGAAGTGTTCTCATCATTGTCTTGATGACTTTTTATCAGTTCTCAAGGAAGAAGAGGTGTAAAGCTTCTTTTATGTAGCAATGAGTCATCATTTCTCTATCACAGTGACACAGTGTCTCCAACCATAATTTATCTTGCTATTTATGAAATTTTTTTGAAGTATTTGATATAGTAGGGGAGCATACTGTGGTTTTATCCCGATTATTTGATTCCTTTCTTCTGTGGAGTTTCTAACTGTTTATACTTATTCGATAGTCTCTGTTAACAACTCTATTTTGAAGAACTGGTCTAAATTCTCTATTGTGTTGCTGTTATTTATTTTGTCCCCATTTATGAAACTGCTTATTATGACCTTTGTGATAATGATATCAATAGACTAATCCCTCTATATTTCAAACAGCTGTGTCAGTCTTTATGACAGTTAGTCTCTTAAATGTTTTTAGTCCAATCAATTACACAGTTACTGAAGGTTTTGTAGATAGTTTATTACGGCCTGGAAGTTGTAAGGATAATTCATTTTTCTCTCGTGTTGCATCATTCTTCTCCCCATCATTTCACAGCTTGCCCTCTCTTTTTCCTTGTTTTGAGGCTTGTTGGGTATTTTCCCTCGTTGGATGTTCAATTCTTGTTTTCTATAGATCACTTATGCAGATCAATTATGAAGTGTTTATGAAAAATTCTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAGGTAGAATAAAATTTGTTGCCAGTAGATTTCACCTCTATCATTTTAACTGTCTTGCAAACTTGGTCATATCCATTGTAATTTCATTTGAATGTGCATGTTTTTCCTGTTTGATGGAAGACATTCGAGGCCTGCGGCTACCTTTTGTCAAACGTAAATTAGTGTTGTGCCATGTGATTCCCTGCTATTAAAATTCTGTGTGGATTACCCGCCCTCCCTTCTAAACTCTGTCTTTGCATTGTCTATTAGGTAGTTTTTGCTTGATTACTTCTTATCTTTTCAGGGGTGGATCTAGTGGCATAAGTTGAGCTACTTCTTTGCCATAGTTGTTCTCCTCATGCTGCTTAAAACTCGTATTTTTTCCTGTAGGAGCTTACTTTTCAGTTTTTGTTGAACTCCATGTTTTTTGTTTTCTTTTGATTTTGCTGCATATACTTGATGCTTATTAATGACTCATCTTACTTGATCAAAAAATAAAATAAAATTCACCTTCGCAATCATTTAGTGCATCTAGAACTTGTGTGCTCCATTGTTCTATTTTAGGGAGATTGGCTTCTGTGGTTGCTGTCCCTCTTTTTTTGTTTCATAGGTGAGATCATTTTCATGAGAAGTCACAGAAGAAATTTAGTCAACAATCATGCTATGAAAATGTGTCTTTTTCGGAATTGTTCCTTTCTAACCCATACATCGACACCTTTTTTTGTCTTCTTTCTTAGCACGTAGTGTTTGACCTGTTTGCTGCTCCTCATTGAGGTATCTTGACCCAACAATCAATCTTTCATGAATTTAGGCCTTATCCAGAACAAATTGGGTTTGATTCACTGTTTTAGCTTCTGTGTCTCCAAGATTCTGTATTTAGAACTCATCATAGTTTGACAATCTTATGCTTGCCATTAATCTACTCCAAATCTTCTCCTTTATCGGCATATGAAAGCTCACATAGACAATGTTGTGCTTGATTGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAAAGCACCAAGAAGTTGCAAATATATTGAGTTTATGACGATAAAACTCTAAACTACAACTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAGAGCACGAAGAACTTGCAAATATATTGAGTTTATGACGATAAAGCTCTAAACTATAATTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGAGAATTGCAGCAGTTAGATTATTTAGGCAATATATAGGAGTCCACCTTCAACCAAAGTTCATCTAGTGTGGCATCTTCAACCTAAGTTCATTTACTCAGTGTTTCATATTCTTTGCGTCATGAAAGATGTCTTATTTCTGTGTCTTGGTGAGCATACTGATAAGATGTTGCAATGTTAATCTTGGTGTGATGAGATCCCAGACATCTTTCATTTTTAGTTTCTACTATAGAATCTGTTTGCTATTACCTTATAAATAAGGATTCTAGATTTGCACCGCCTTTTGTCCTTTCGCTATTCTAGGAAGGTTATTTGGTGCTAGTTGTTAGACAAAAGCAAATCCATTCACTAAGTGGAATTTGTTGTGGCATCATTGAATAAGATAATGTTTGGTTCAGCAAAGGTAGGGATGCCTGACATGTCCAGATGCTTACCATCAGCTGGCGTTTCTGAATGTACTCTCTTTGAATAAAATAGGTGCTCAGCTGAGTGAATAACAGGAGGTCTGACATCTTGAGAGATTTACTGTCATCTGTTATTATTGGCTGTAGGCTGTGCCATCATTGAATATTAGGTACATTCGGGACGGCTCAAATGCTGTATAATGATGGAGAGAAACTTCTAGTAGCAGGTTTTGGTCCCTCTTTTCTACCCTGGAGTCCTCCAACCGAGAAAAATTAGGGGGGTCATTTTGGTTTTGGGTCTGCGACGAATAGGTTCAAGAGATGAGAGAATTAAGGATACCCACCAGAAAGACTAATCCAATCCATAAGGAGGTACCAGAAAATACAACATTTTTGTTACTTGACCAGCCATCAGGAGAAGCAAATACAACGGGTACGCTAATCAATAAGATTAATGAAGTAGCAATTAATGCAAAAACAGCCAATTGGAAAGCAAGAGTCATGCTTTTAATCCTCCAAGCTACCAACAAATGAACTATATACCATTAGACCGTTAGAGAATATTGATGGATGTGAAAATATGACTGAAATCGTCATAAGCTGGAGTTTATACTGGGAAACTGGTTGCATGGGATTCCATAATCATACATACATGTCCAGAAATGTCAACTTAAATTTGACTTATATCTGTCAAGTGTCTGGATGGTTTGTCTAGCTAGAGTCCAATCTCGTTAATGTGCTTTCCTATGTTACTCGGATTCTTCATAAACAGCAATGGGGTGTGTGGGATCCTCCAAGATCAGTGCATTTTTTGGAGGATCTGACACAAGTATGGCATCACTATTGGAGAGTCCGAGCAGCATAGGTGGCTTACGTTGGTTAAATGGTTATCTGATATTAATTTAGTGAGGATAATTGTTTTATTTTGGGAATCATGTATACAGGAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAGGTTCTCATATACTGGACCTAACATATATAGTTACTGTTTCTTTTCCCATTTTGTTTGAGCACATGTTTTCAGCTATTATCTTTGATGTTCAGCCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAGGATGAAAGTGGGGAGGAGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGT</genome_strand>
        <mrna_strand>CGCTCCAATTTTTC-TCTTCTTCTCCAAATGCA-ATTTGACATAGTAATTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGAAGAAGAGAATA-GCAGCATTGAGTACCTAGGACTGTAGAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAG...........................................................................................................................................ATGTCGAGAAGTTCTATCAGTCGTGTGATCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAG............................................................................................CCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAGGATGAAAGTGGGGAGGAGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592627" ref_strand="+" ref_description="SGN-U592627 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|63028790|gb|AAY27262.1| (e_value=1e-47) putative alfin-like transcription factor [Solanum tuberosum]; (*ATH) AT1G14510.1 (e_value=5e-47) | Symbol: None | PHD finger family protein, contains Pfam domain, PF00628: PHD-finger | chr1:4961882-4964420 REVERSE | Aliases: F14L17.29, F14L17_29; (*SWP) sp|O81488|Y5621_ARATH (e_value=7e-40) PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210; ">
      <seq>cataatttttgaaaaaaccaataaatccaagtactcgtacactagggctacatgtatctatttaccaaaaaagaaactcaaataaaggctgctactaaaaccctttccccaccaccccactttcctctttcttcaggctcttctctctctctctctatatatccgtttcttacaatttctctacttgcttctcacaatttctcatgaaaatttgagcttttctctttatgaatcttcatttttcacagcacatagcaagctatttttaaagttttgggcaacatgaaaagaaaaccctatttctttggggaaaaaaccctaattttcttgttttttttcaaaaactcaatttttttcttggggggttgttaaaaattgagtgaaaaaaaggataatatggaaaatacggtacctaggactgtaaaaaaagtattcaacgatttcaaaggtcgaaaagctggtttaattaaagcactaactacagatgtcgagaagttctatcagtcgggtgatcctgaaaaggaaaacttgggtctctatgggcttcctaatgaaacatggaaagtaaacctccctgttgaggaggtgcctccaaaacttccggagccagcattaggcataaactttgcacgtgatggaatgcaaaaaaaaaacgggttatcacttgttgctgttcatagggattcagggctgctttctgtggcattctactttggcgcacggtttgggtttggcaaaagtgaaaggaagaggcttttccaaatgacaaatgatctcccaccagtgtttgaggttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="68492" stop="62522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68192" g_stop="67709" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67708" i_stop="67570" i_length="139">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67569" g_stop="67537" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="517" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67536" i_stop="65715" i_length="1822">
            <donor d_prob="0.490" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65714" g_stop="65486" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="746" r_length="229" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65485" i_stop="62875" i_length="2611">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62874" g_stop="62822" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="799" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U592627" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68192" e_stop="67709"/>
          <exon e_start="67569" e_stop="67537"/>
          <exon e_start="65714" e_stop="65486"/>
          <exon e_start="62874" e_stop="62822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATTTTTGAAAGAACCAATAGATCCAAGTACTCGTACACTAGTGCTACATGTATCTATTTACCAAAAAAGAAACTCAAATAAATGCTGCTACTAAAACCCTTTCCCCACCACCCCACTTTCCTCTTTCTTCATGCTCTTCTCTCTCTCTCTCTATATATCCGTTTCTTACAATTTCTCTACTTGCTTCTCACAATTTCTCATGAAAATTTGAGCTTTTCTCTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAGAGGAAACCCTAGTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAGACTCGATTTTTTTCTTGTGGGGTTGTTAAAAATTGAGTGAAGAGAAGGATAATATGGAAAATACGGTACCTAGGACTGTAGAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAGGTTTGTAGTGTTGTTTCCTTTTTTTTTTTCTTAAAATTTTCTTGCACTTTTTATGGGGTTTTGAGCATAATTTCATTCTGGGTGTTCCTGAATTTTGTTGGTTTTTACTAATTATGATGTTCTTAAAAAAATTATGCAGATGTCGAGAAGTTCTATCAGTCGTGTGATCCTGGTGAGTTTTCTGCTGCTCAGTTTTGATGGACTGTTGCGGTCCGTCAATATTCACGTTTGGTTCTTCTGTGCTATGAGCTTGAGCTGTATTTCTAAATGCAGTATATGTCTTGGAGGCTATAGCTTTTAATTTCTGGGACCGTTCTTTGTATTCATATTTTTTCTTCAAATTGCTGCTCTTTTATGTTCTCATTGAGCGATTTGGTTGAGTGATTAATTAGGACTTTGTCACTCTTTAATATTTCAGAATTTTGTAATTTGCTTCTTGTCCCCTTTTTTTTGGGTCACTTTTGTAATTTCAGTGCTGTTTGTCCTAGGGAGTGGCCTAAAATTCATGTTAGAGCTTTCTGACTGTTTACATTAGGGCTGTGTATCGGCTAGTTCGGTTCAGTTTTGAAGTTTATTGGGTTGGCTTATTGGTTATCGGTTTGTAGAGATGCTAAACCGTTATAGAACCATTATGATATTGGCTTTATCGGTTATTGATTTATCGGTTTTTTATCGTTATCGGTTTAACCGTTAAGATTTGACACAAAAGAAAAAACATTGAAAATCATTTAAAAACAAGGTGACAAACCAAATAAACCATGCACTTGAGTTCACAAGTTACATCTTGCTCTAAAGCAAACACTTTTACATTGTAGAATAATCAAGTGTTTGAGACAACCAAAAAATAAAATTAGGAAATTAAACTCCAAGTCGAGAACTTTATATACAAAATGGTATAAATATAATTATTTAATTTACTATTGGGTTACTGGTTAACCCATTAAGAACAAAACTTTAAACCGTTAAGAACCAATAACCCGATTAACAAAAAAAATCAAAATCGTTATCAAAACCACTAAAACAATAACCTAATACTTTTTTATCGATTTGGTTTTGAACAGCCCTAGTTTACATCATTTTGTCATTTGATGTTCTGCTTTGGTGTTATGCAGGAACAGAAAGATCATATCTTTATTGAGTAGTTAATTGTCGCCTTCGATATGAAAGAGTAATTCTTCTGCATTTTCAACAGAATTATCATTATCTAAAACTGCTTTGCAAAACATGATCTTTAAAAATGAGATCATTACTTAGAATTTTATGTCGTTTAGTGAGAGTGTCAGTGTCAGAAGTGTTCTCATCATTGTCTTGATGACTTTTTATCAGTTCTCAAGGAAGAAGAGGTGTAAAGCTTCTTTTATGTAGCAATGAGTCATCATTTCTCTATCACAGTGACACAGTGTCTCCAACCATAATTTATCTTGCTATTTATGAAATTTTTTTGAAGTATTTGATATAGTAGGGGAGCATACTGTGGTTTTATCCCGATTATTTGATTCCTTTCTTCTGTGGAGTTTCTAACTGTTTATACTTATTCGATAGTCTCTGTTAACAACTCTATTTTGAAGAACTGGTCTAAATTCTCTATTGTGTTGCTGTTATTTATTTTGTCCCCATTTATGAAACTGCTTATTATGACCTTTGTGATAATGATATCAATAGACTAATCCCTCTATATTTCAAACAGCTGTGTCAGTCTTTATGACAGTTAGTCTCTTAAATGTTTTTAGTCCAATCAATTACACAGTTACTGAAGGTTTTGTAGATAGTTTATTACGGCCTGGAAGTTGTAAGGATAATTCATTTTTCTCTCGTGTTGCATCATTCTTCTCCCCATCATTTCACAGCTTGCCCTCTCTTTTTCCTTGTTTTGAGGCTTGTTGGGTATTTTCCCTCGTTGGATGTTCAATTCTTGTTTTCTATAGATCACTTATGCAGATCAATTATGAAGTGTTTATGAAAAATTCTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAGGTAGAATAAAATTTGTTGCCAGTAGATTTCACCTCTATCATTTTAACTGTCTTGCAAACTTGGTCATATCCATTGTAATTTCATTTGAATGTGCATGTTTTTCCTGTTTGATGGAAGACATTCGAGGCCTGCGGCTACCTTTTGTCAAACGTAAATTAGTGTTGTGCCATGTGATTCCCTGCTATTAAAATTCTGTGTGGATTACCCGCCCTCCCTTCTAAACTCTGTCTTTGCATTGTCTATTAGGTAGTTTTTGCTTGATTACTTCTTATCTTTTCAGGGGTGGATCTAGTGGCATAAGTTGAGCTACTTCTTTGCCATAGTTGTTCTCCTCATGCTGCTTAAAACTCGTATTTTTTCCTGTAGGAGCTTACTTTTCAGTTTTTGTTGAACTCCATGTTTTTTGTTTTCTTTTGATTTTGCTGCATATACTTGATGCTTATTAATGACTCATCTTACTTGATCAAAAAATAAAATAAAATTCACCTTCGCAATCATTTAGTGCATCTAGAACTTGTGTGCTCCATTGTTCTATTTTAGGGAGATTGGCTTCTGTGGTTGCTGTCCCTCTTTTTTTGTTTCATAGGTGAGATCATTTTCATGAGAAGTCACAGAAGAAATTTAGTCAACAATCATGCTATGAAAATGTGTCTTTTTCGGAATTGTTCCTTTCTAACCCATACATCGACACCTTTTTTTGTCTTCTTTCTTAGCACGTAGTGTTTGACCTGTTTGCTGCTCCTCATTGAGGTATCTTGACCCAACAATCAATCTTTCATGAATTTAGGCCTTATCCAGAACAAATTGGGTTTGATTCACTGTTTTAGCTTCTGTGTCTCCAAGATTCTGTATTTAGAACTCATCATAGTTTGACAATCTTATGCTTGCCATTAATCTACTCCAAATCTTCTCCTTTATCGGCATATGAAAGCTCACATAGACAATGTTGTGCTTGATTGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAAAGCACCAAGAAGTTGCAAATATATTGAGTTTATGACGATAAAACTCTAAACTACAACTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAGAGCACGAAGAACTTGCAAATATATTGAGTTTATGACGATAAAGCTCTAAACTATAATTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGAGAATTGCAGCAGTTAGATTATTTAGGCAATATATAGGAGTCCACCTTCAACCAAAGTTCATCTAGTGTGGCATCTTCAACCTAAGTTCATTTACTCAGTGTTTCATATTCTTTGCGTCATGAAAGATGTCTTATTTCTGTGTCTTGGTGAGCATACTGATAAGATGTTGCAATGTTAATCTTGGTGTGATGAGATCCCAGACATCTTTCATTTTTAGTTTCTACTATAGAATCTGTTTGCTATTACCTTATAAATAAGGATTCTAGATTTGCACCGCCTTTTGTCCTTTCGCTATTCTAGGAAGGTTATTTGGTGCTAGTTGTTAGACAAAAGCAAATCCATTCACTAAGTGGAATTTGTTGTGGCATCATTGAATAAGATAATGTTTGGTTCAGCAAAGGTAGGGATGCCTGACATGTCCAGATGCTTACCATCAGCTGGCGTTTCTGAATGTACTCTCTTTGAATAAAATAGGTGCTCAGCTGAGTGAATAACAGGAGGTCTGACATCTTGAGAGATTTACTGTCATCTGTTATTATTGGCTGTAGGCTGTGCCATCATTGAATATTAGGTACATTCGGGACGGCTCAAATGCTGTATAATGATGGAGAGAAACTTCTAGTAGCAGGTTTTGGTCCCTCTTTTCTACCCTGGAGTCCTCCAACCGAGAAAAATTAGGGGGGTCATTTTGGTTTTGGGTCTGCGACGAATAGGTTCAAGAGATGAGAGAATTAAGGATACCCACCAGAAAGACTAATCCAATCCATAAGGAGGTACCAGAAAATACAACATTTTTGTTACTTGACCAGCCATCAGGAGAAGCAAATACAACGGGTACGCTAATCAATAAGATTAATGAAGTAGCAATTAATGCAAAAACAGCCAATTGGAAAGCAAGAGTCATGCTTTTAATCCTCCAAGCTACCAACAAATGAACTATATACCATTAGACCGTTAGAGAATATTGATGGATGTGAAAATATGACTGAAATCGTCATAAGCTGGAGTTTATACTGGGAAACTGGTTGCATGGGATTCCATAATCATACATACATGTCCAGAAATGTCAACTTAAATTTGACTTATATCTGTCAAGTGTCTGGATGGTTTGTCTAGCTAGAGTCCAATCTCGTTAATGTGCTTTCCTATGTTACTCGGATTCTTCATAAACAGCAATGGGGTGTGTGGGATCCTCCAAGATCAGTGCATTTTTTGGAGGATCTGACACAAGTATGGCATCACTATTGGAGAGTCCGAGCAGCATAGGTGGCTTACGTTGGTTAAATGGTTATCTGATATTAATTTAGTGAGGATAATTGTTTTATTTTGGGAATCATGTATACAGGAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTA</genome_strand>
        <mrna_strand>CATAATTTTTGAAAAAACCAATAAATCCAAGTACTCGTACACTAGGGCTACATGTATCTATTTACCAAAAAAGAAACTCAAATAAAGGCTGCTACTAAAACCCTTTCCCCACCACCCCACTTTCCTCTTTCTTCAGGCTCTTCTCTCTCTCTCTCTATATATCCGTTTCTTACAATTTCTCTACTTGCTTCTCACAATTTCTCATGAAAATTTGAGCTTTTCTCTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAAAGAAAACCCTATTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAAACTCAATTTTTTTCTTGGGGGGTTGTTAAAAATTGAGTGAAAAAAAGGATAATATGGAAAATACGGTACCTAGGACTGTAAAAAAAGTATTCAACGATTTCAAAGGTCGAAAAGCTGGTTTAATTAAAGCACTAACTACAG...........................................................................................................................................ATGTCGAGAAGTTCTATCAGTCGGGTGATCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAAAACTTGGGTCTCTATGGGCTTCCTAATGAAACATGGAAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAAAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAAAAAAAAACGGGTTATCACTTGTTGCTGTTCATAGGGATTCAGGGCTGCTTTCTGTGGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAAAGTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGACAAATGATCTCCCACCAGTGTTTGAGGTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593326" ref_strand="+" ref_description="SGN-U593326 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|63028790|gb|AAY27262.1| (e_value=6e-11) putative alfin-like transcription factor [Solanum tuberosum]; (*ATH) AT5G26210.1 (e_value=9e-12) | Symbol: None | PHD finger family protein, contains Pfam domain, PF00628: PHD-finger | chr5:9157982-9160357 REVERSE | Aliases: T19G15.60, T19G15_60; ">
      <seq>aaagtgaaaatggatcttcaaacacaagatgataacaggcacaatttccttaaaatctaaaacgcaatccgaaagcaagataacagaaagcaaatggacatcccaattccatcagcaaacatttaacttttgacatttgataactgagctaaaactcctacaccttccaacatcaccacttaattgtccttgccgcaatttttagactttagctctcttgctactgcaactaggacacttgtactgtttgatatgctcagctttaactggagtaatctttcaacattttccatggaaccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="69275" stop="70176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69575" g_stop="69876" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-U593326" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69575" e_stop="69876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAAAATGGATCTTCAAACACAAGATGATAACAGGCACAATTTCTTTAAAATCTAAAACGCAATCCGAAAGCAAGATAACAGAAAGCAAATGGACATCCCAATTCCATCAGCAAACATTTAACTTTTGACATTTGATAACTGAGCTAAAACTCCTACACCTTCCAACATCACCACTTAATTGTCCTTGCCGCAATTTTTAGACTTTAGCTCTCTTGCTACTGCAACTAGGACACTTGTACTGTTTGATATGCTCAGCTTTAGCTGGAGTAATCTTCACACATTTTCCATGGAACCATC</genome_strand>
        <mrna_strand>AAAGTGAAAATGGATCTTCAAACACAAGATGATAACAGGCACAATTTCCTTAAAATCTAAAACGCAATCCGAAAGCAAGATAACAGAAAGCAAATGGACATCCCAATTCCATCAGCAAACATTTAACTTTTGACATTTGATAACTGAGCTAAAACTCCTACACCTTCCAACATCACCACTTAATTGTCCTTGCCGCAATTTTTAGACTTTAGCTCTCTTGCTACTGCAACTAGGACACTTGTACTGTTTGATATGCTCAGCTTTAACTGGAGTAATCTTTCAACATTTTCCATGGAACCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578424" ref_strand="+" ref_description="SGN-U578424 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|63028790|gb|AAY27262.1| (e_value=4e-116) putative alfin-like transcription factor [Solanum tuberosum]; (*ATH) AT1G14510.1 (e_value=1e-93) | Symbol: None | PHD finger family protein, contains Pfam domain, PF00628: PHD-finger | chr1:4961882-4964420 REVERSE | Aliases: F14L17.29, F14L17_29; (*SWP) sp|O81488|Y5621_ARATH (e_value=4e-83) PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210; ">
      <seq>aagaagaactctcgatttgcacagaagcacaagaattgactctctgtacatgctcagtcttgttgctgctataaatggaggcggcccttttcttttttaattttctaaactgtcaaaaaaaccctttccctctcttcccgctgtttgttctctttctctctctacaatctctgccactttacttcttacaatttctaagctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttgttagaaattgcgtgtagacaaggttattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctcccggtggaagaggtgcctccagaacttcctgaaccagcattgggcataaattttgcacgtgatggaatgcaagaaaaagactggttatcacttgttgctgttcacagtgattcgtggctgctttctgttgcattttactttggcgcaaggtttgggttcggcaagagtgataggaagaggcttttccaaatgataaatgatctcccaacagtgtttgaagttgttactggagctgctaaacaaacacgtgatgctcctcacaacaatagcaacaaaagcaaatcaagtggaaagcctcggcagccagagtcccaactcaaggcagtaaaggtgtctccacctaaaatggagaacgacagtggtgaggaggaagaagaagaagaagaggatgaacaaggcgcaactctgtgtggagcttgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgcgagagatggttccatggaaaatgtgtgaagattactccagctaaagctgagcatatcaaacagtacaagtgtcctagttgcagtagcaagagagctaaagtctaaaaattgcggcaaggacaattaagtggtgatgttggaaggtgtaggagttttagctcagttatcaaatgtcaaaagttaaatgtttgctgatggaattgggatgtccatttgctttctgttatcttgctttcggattgcgttttagattttaaagaaattgtgcctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75272" stop="69308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74985" g_stop="74605" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="485" r_length="380" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="518" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72309" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="747" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72308" i_stop="70276" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70275" g_stop="70155" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="868" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70154" i_stop="70055" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70054" g_stop="69608" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="869" r_stop="1315" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U578424" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1211</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74985" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72309"/>
          <exon e_start="70275" e_stop="70155"/>
          <exon e_start="70054" e_stop="69608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTATTTACCAAAAACCCTTTCCCTCTCTTCCCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAGGTAAAATAACATCCACCCTCTCTTTTGAACTCTGAATTTGCAGTGTCTGTTAGGTAATATCTGCTCGCGCTTCTTTTTATCTTCTGGGGTTTATCTAGTGGCATATGTTGAGCTATGTCTTTCCTATAGCTGTTCCCCTCATGCTTCTTAAAATTCATCTCCCCAAGCATTTAGTGCATCCAGAACTTGTATGCTCCATCGATCAATTTTAGGGAGATAAGCTTCTGTGATTGCTGTCCGTTTTTTTTCCATAGCTGAGATAATTTTCCATGAAAAATCACTGAAGAAATTTAGTCAACAATCATGTATGAACATCTCTTTCCCAGAACTGTACTTTCTAACCCATACAACAGTTGGAGCTCCCTTTTTTCCCTTTGATCTTTGTTGAAGAAACAGTTACATGTTTCGTTTTTGTTGTCTTCTTGCTTACAATGTAGTGTTTGACCTGTTTTTTGCCTCTCATTGAGGTATGTTAACCCAGCAATCAATCAATCATGAACTAGGCTAATCTCGAATAAGGTTGGTTTGATTCCCTTATCTGCTTCATCTCTACAAGATTCAGTATTTAGGATTCATCATAATTAGACGAGTTTATGCTTGCTGTTAATCTACTCCAATCCTTCTGCTTCATCGACATATTAAGGCTCTTAATAGACAGTTGTGGCTGATTGATGGTGTTGAGTTTAAAACATCTTTTTCATTCTAAGGATATACTTTATATACAAAAGCACCAAGAAGCTGCAAATATATTGAGAGAGTTTATAACAGTAAAACTCTGAAGTTTAAGTATTAGCTGTAATTAGGATTACTAAGTTATAACTCTGGAGTGGAGAATTTCTAGCAGTGAGATTATTTGGGCAATATATAGAAGTCCACCTTCATCCAAAGTTCATTTAGTCGGTGTTTCATATTTTCTGTGTCATGAAAACATGATAAGACTTACCGATAAGCTGTAGTTGCTTTGGAGGTTGGTAGCTGCATCAAGGGAATTTGGAAAATGATACCTGCAGCCACTTTTTGGAGTATCTGGAATGATAGTAATAGAAGATGCTTTTAATGTAAAAGCTAGTTGCCTCATGTTTTTGTATAGTTGGTTTATTTATCCCTCTCGATTCCCGGCTCCTTTCTAAGCTTTGTCAGCTCCCCGAATCTTAACTAGCAATGTGAAGGAGCTACTGTATTTTTGTAACTATTATGCATCTACTTTATGTCTGCGATATACTAATAACTTCGTTATAAAAAAAGATGTCTTATTACTTTGTCTTGGTGAGCATACTGATGACTTGTTGCAATGAGATTCCAGACATCTTCCATTTTTAGGTTTCTATAGAATTTGTCTATCATTACCTTATAAATATGGAATATAGATTTACAAAGCCTTTTGTCCGTTCACTATTCTGGAGAAGGTTATTAGGTCCTAGTTATTAGACAAGCAGATTCATTTGCATAGTGACATATTTTGTGGGCATCATTAGATCAGATAATGCTTGGTTAGAAGCGAGGATGCTTGGCATGTTGAGATGCTTACCTTCAGCCGGTGTGTTGGATGTAACATCATAGAATAAAATAGTATGTTGAGTGAATAGTAGGAGTTTCAGACATGTTGAGAGATCATCACTGTTATTGTTGGCTGTAGCATCATTGAATATGTTAGTGCTTAGTTGAATAGGCAAAGGATGTCTGACATGTCAGGACAGCCCAAATGCTGTATAATATTTGGAGGCTGGAGCAACTTGTGAGTAACAGGTCTACTTTTTGTATCTGCTGCTATTGTAGGTTAGAGAATCTTCTGGATGTGAAACTATGGCTGTAATCATTATAAGCTGGATTTTATATTGGGAAACTGGTGCATGTGATCCACGATCATGTGTACATGTCCAGAAATGTTAAACTTAAATCTCTTATATTTGTCTAGTGTATGGATAGTTTGTCTAACTAGTCCAATGTCATAAATGTGTCTTCCATTGGTTAAATGGTTATCTGAGATATATTTAGAGAGAATAATTGTTTTATTTTGGAAATCATGTATACAGGAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAGGTTCTCATATACTGGACCTAACATGTAGAACTACTGTATATATATATATATTTTTCATTTTGTTTGAGCATATGTTTTCTGCATCATCTTTAATTTGCAGCCTCGGCAGCCAGAGTCCCAACTCAAGGCAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTT</genome_strand>
        <mrna_strand>TAAACT-GTCA-AAAAAACCCTTTCCCTCTCTTCCCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAG....................................................................................................CCTCGGCAGCCAGAGTCCCAACTCAAGGCAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592391" ref_strand="+" ref_description="SGN-U592391 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|63028790|gb|AAY27262.1| (e_value=1e-14) putative alfin-like transcription factor [Solanum tuberosum]; (*ATH) AT1G14510.1 (e_value=7e-12) | Symbol: None | PHD finger family protein, contains Pfam domain, PF00628: PHD-finger | chr1:4961882-4964420 REVERSE | Aliases: F14L17.29, F14L17_29; ">
      <seq>tgccctttctctctctacaatctctgccactttacttcttacaatttctaagctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttgttagaaattgcgtgtagacaaggttattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgggagtggcctaaaccttatggttagaggtttctgattgttggaatcattttgtcattcaatgttcttctttgggtgttatgcaggaatgggaagattgtatttttgtgagggagtttatcgcttcaatcaaaaaagcaattcttctgcatgtacaacagaattatcatgatttccaactgcattccacaacatgaattgtaaaaaaaaggagaacttgtgtctctatgggcttcctaaatgaacatgggaaataaacctcccggtggaagaaggtgcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75241" stop="72163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74941" g_stop="74605" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="371" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="74162" i_length="280">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74161" g_stop="73958" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="575" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73957" i_stop="72538" i_length="1420">
            <donor d_prob="0.569" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72537" g_stop="72463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="651" r_length="76" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U592391" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74941" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="74161" e_stop="73958"/>
          <exon e_start="72537" e_stop="72463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAG-AGGTGCCTC</genome_strand>
        <mrna_strand>TGCCCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG........................................................................................................................................................................................................................................................................................GGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAGGGAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCCAACTGCATTCCACAACATGAATTGTAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAAATGAACATGGGAAATAAACCTCCCGGTGGAAGAAGGTGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563422" ref_strand="+" ref_description="SGN-U563422 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157354334|emb|CAO46935.1| (e_value=6e-83) unnamed; (*ATH) AT2G02450.1 (e_value=6e-84) | Symbol: ANAC034 | no apical meristem (NAM) family protein, contains Pfam PF02365: No apical meristem (NAM) domain | chr2:648043-650813 FORWARD | Aliases: ANAC034; (*SWP) sp|Q9C932|NAC19_ARATH (e_value=5e-41) NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=ANAC; ">
      <seq>ttgaatatatatatatataattcccttcatgacaagttactattactaaagttatactatcttttgtttttttatggcaattggcccttttattactacaaacatgagtcaatcccaacaacaacatcaacaacaacaagatgatgatgataacaacaacatcaacaacactattaaaggagatgataatgatgatgacgatgatcatgaacacgacatggtcatgcctggttttcgatttcatcctactgaggaagagcttgtagagttttatcttcgccgtaaggttgaaggaaaacgttttaatgtggaactcatcacttttcttgatctttatcgttatgacccttgggagcttcctgctttggcagcaattggagagaaggagtggtatttctatgtccaagagatagaaagtatagaaatggagataggccaaatagggttacaacatcagggtattggaaggctactggagctgatagaatgattagaacggagaattcgcggtccattggcctgaaaaagacattggttttctactcagggaaggctcctaaaggcataagaagtagttggattatgaatgaatatcgtcttccacatcatgaaactgaacgcctacaaaaggcagaaatttcactttgtcgtgtctataaaagagctggagtggaagaccatccatctcttccaagatcactactaacaacaagagcatcatcatcttcttcttctagaggaacaactcccatcaaaaaacaacaagtagcacaacaagactcatcattaatctctccgttgtacctaggacaatcttcccaacaacaaatcgacgaaaaattaagtactgaaacaagtgcaagtagtactagtactgatcaccatcaccatcatcagcatcatgttgctacatcactcgggctcaattccctctcaaattcctacactaacatcgcgctagaccctattgggagcgcggttaatatcactacatcaaccttaacacctttcacatcattagtagcaacaacaaataataccactgatgatctccatagactaataaacttagaccaagtcgtcgcgtttcataataatcaacaccattttcatcctcctcctggtgttgtgccccaacaatatcctcctccattattactgcaacaaccacaatctttacttcatcaaggatcacttccatcttccgcggccgcggctttttcagacagattgtgggagtggaattcaattaatcaaacagatggaagctgcaaagatgatcattatgatcaaggcaataatcccttcaagtaatttcatcatcactaaactgcacatatacatatcatatatatatatctactgatatttataattttactagctagctagctagctctatgatcaaattaaataatgtgtgtgtgggatcttattgttagggttttggttagttctaattagttagggtactattattaagctattgtaatctttctaattacttttctgtacttgatgaaattagatatgtgctaattaagttagctctacagttcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="83694" stop="81039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83394" g_stop="83033" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83032" i_stop="82649" i_length="384">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82648" g_stop="82380" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="630" r_length="268" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82379" i_stop="82274" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.290" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82273" g_stop="81339" g_length="935"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="1564" r_length="934" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U563422" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1566</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83394" e_stop="83033"/>
          <exon e_start="82648" e_stop="82380"/>
          <exon e_start="82273" e_stop="81339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATATATATATATATAATTCCCTTCATGACAAGTTACTATTACTAAAGTTATACTATCTTTT-TTTTTTTATGGCAATTGTCCCTTTTATTACTACAAACATGAGTCAATCCCAACAACAACATCAACAACAACAAGATGATGATGATAACAACAACATCAACAACACTATTAAAGGAGATGATAATGATGATGACGATGATCATGAACACGACATGGTCATGCCTGGTTTTCGATTTCATCCTACTGAGGAAGAGCTTGTAGTAGTTTTATCTTCGCCGTAAGGTTGAAGGAAAACGTTTTAATGTGGAACTCATCACTTTTCTTGATCTTTATCGTTATGACCCTTGGGAGCTTCCTGGTATATACTACTATTCATTTTTACACTCTTTCAATTTCTTTCCTTTCTACGTAATACAAGCAGATTCAGAATTTAAATTTTAACACAAAGTTCCAGTCTTTTTTATTGTGAGTTCATAATTCAATGATTACTATAATCTATATCAATTTCTATACTAAAAATGTTGGTTTTAAATTGAACTTGTTGAACAAATTGTGAACAGTGGATTCATCTGTACTCAATACTTTGTGATGCAGATCATAATTATTCTTAAAAATATTAATTTTGAACCCTAGATCCGCCTCTGCTTTACTTTTGTGTGCTTTACCTAGCACATAATTTGGATTCCATTGAGTTTTATTTTTGGAAGTTTATTCTATATGTATAAGTTTGTTTGGTTCATAGCTTTGGCAGCAATTGGAGAGAAGGAGTGGTATTTCTATGTGCCAAGAGATAGAAAGTATAGAAATGGAGATAGGCCAAATAGGGTTACAACATCAGGGTATTGGAAGGCTACTGGAGCTGATAGAATGATTAGAACGGAGAATTCGCGGTCCATTGGCCTGAAAAAGACATTGGTTTTCTACTCAGGGAAGGCTCCTAAAGGCATAAGAAGTAGTTGGATTATGAATGAATATCGTCTTCCACATCATGAAACTGAACGCCTACAAAAGGTATATATATATATCACAACCTTAGCTTTCATTATTCATTCAAATGTGTTCGTTTCACAGGCACATGAGGTCAATTCCGATTACAACTAATATGTAGTATTTTCAGGCAGAAATTTCACTTTGTCGTGTCTATAAAAGAGCTGGAGTGGAAGACCATCCATCTCTTCCAAGATCACTACTAACAACAAGAGCATCATCATCTTCTTCTTCTAGAGGAACAACTCCCATCAAAAAACAACAAGTAGCACAACAAGACTCATCATTAATCTCTCCGTTGTACCTAGGACAATCTTCCCAACAACAAATCGACGAAAAATTAAGTACTGAAACAAGTGCAAGTAGTACTAGTACTGATCACCATCACCATCATCAGCATCATGTTGCTACATCACTCGGGCTCAATTCCCTCTCAAATTCCTACACTAACATCGCGCTAGACCCTATTGGGGAGCGCGGTTAATATCACTACATCAACCTTAACACCTTTCACATCATTAGTAGCAACAACAAATAATACCACTGATGATCTCCATAGACTAATAAACTTAGACCAAGTCGTCGCGTTTCATAATAATCAACACCATTTTCATCCTCCTCCTGGTGTTGTGCCCCAACAATATCCTCCTCCATTATTACTGCAACAACCACAATCTTTACTTCATCAAGGATCACTTCCATCTTCCGCGGCCGCGGCTTTTTCAGACAGATTGTGGGAGTGGAATTCAATTAATCAAACAGATGGAAGCTGCAAAGATGATCATTATGATCAAGGCAATAATCCCTTCAAGTAATTTCATCATCACTAAACTGCACATATACATATCATATATATATATCTACTGATATTTATAATTTTACTAGCTAGCTAGCTAGCTCTATGATCAAATTAAATAATGTGTGTGTGGGATCTTATTGTTAGGGTTTTGGTTAGTTCTAATTAGTTAGGGTACTATTATTAAGCTATTGTAATCTTTCTAATTACTTTTCTGTACTTGATGAAATTAGATATGTGCTAATTAAGTTAGCTCTACAGTTCAATTC</genome_strand>
        <mrna_strand>TTGAATATATATATATATAATTCCCTTCATGACAAGTTACTATTACTAAAGTTATACTATCTTTTGTTTTTTTATGGCAATTGGCCCTTTTATTACTACAAACATGAGTCAATCCCAACAACAACATCAACAACAACAAGATGATGATGATAACAACAACATCAACAACACTATTAAAGGAGATGATAATGATGATGACGATGATCATGAACACGACATGGTCATGCCTGGTTTTCGATTTCATCCTACTGAGGAAGAGCTTGTAG-AGTTTTATCTTCGCCGTAAGGTTGAAGGAAAACGTTTTAATGTGGAACTCATCACTTTTCTTGATCTTTATCGTTATGACCCTTGGGAGCTTCCTG................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGCAGCAATTGGAGAGAAGGAGTGGTATTTCTATGT-CCAAGAGATAGAAAGTATAGAAATGGAGATAGGCCAAATAGGGTTACAACATCAGGGTATTGGAAGGCTACTGGAGCTGATAGAATGATTAGAACGGAGAATTCGCGGTCCATTGGCCTGAAAAAGACATTGGTTTTCTACTCAGGGAAGGCTCCTAAAGGCATAAGAAGTAGTTGGATTATGAATGAATATCGTCTTCCACATCATGAAACTGAACGCCTACAAAAG..........................................................................................................GCAGAAATTTCACTTTGTCGTGTCTATAAAAGAGCTGGAGTGGAAGACCATCCATCTCTTCCAAGATCACTACTAACAACAAGAGCATCATCATCTTCTTCTTCTAGAGGAACAACTCCCATCAAAAAACAACAAGTAGCACAACAAGACTCATCATTAATCTCTCCGTTGTACCTAGGACAATCTTCCCAACAACAAATCGACGAAAAATTAAGTACTGAAACAAGTGCAAGTAGTACTAGTACTGATCACCATCACCATCATCAGCATCATGTTGCTACATCACTCGGGCTCAATTCCCTCTCAAATTCCTACACTAACATCGCGCTAGACCCTATT-GGGAGCGCGGTTAATATCACTACATCAACCTTAACACCTTTCACATCATTAGTAGCAACAACAAATAATACCACTGATGATCTCCATAGACTAATAAACTTAGACCAAGTCGTCGCGTTTCATAATAATCAACACCATTTTCATCCTCCTCCTGGTGTTGTGCCCCAACAATATCCTCCTCCATTATTACTGCAACAACCACAATCTTTACTTCATCAAGGATCACTTCCATCTTCCGCGGCCGCGGCTTTTTCAGACAGATTGTGGGAGTGGAATTCAATTAATCAAACAGATGGAAGCTGCAAAGATGATCATTATGATCAAGGCAATAATCCCTTCAAGTAATTTCATCATCACTAAACTGCACATATACATATCATATATATATATCTACTGATATTTATAATTTTACTAGCTAGCTAGCTAGCTCTATGATCAAATTAAATAATGTGTGTGTGGGATCTTATTGTTAGGGTTTTGGTTAGTTCTAATTAGTTAGGGTACTATTATTAAGCTATTGTAATCTTTCTAATTACTTTTCTGTACTTGATGAAATTAGATATGTGCTAATTAAGTTAGCTCTACAGTTCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573068" ref_strand="+" ref_description="SGN-U573068 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157354339|emb|CAO46940.1| (e_value=4e-113) unnamed; (*ATH) AT5G49800.1 (e_value=3e-93) | Symbol: None | expressed protein | chr5:20251868-20253410 REVERSE | Aliases: K21G20.1, K21G20_1; ">
      <seq>gaaacaatctaacattgtactttgatctaacaacccccacccccttctcaaccatatatattcatctatattttccctcattttgaggaacaaaactaaaataaaagctctcacatatccttttttttggtggctcaagatgagtaatcttacttctagtcctgcaccttgtagtagatcatggtcaattagtgaggactcattgagaagatatgtgttctatgcaagtgaaaattgcatccaggagttgttatcagcttcagattcaaaaagctgtaacgatggctggaaaatactcggcgtagataacggcgttgagatagctaaacgccgttcaggttcccttcacactttccgtagccgttggttactcaaatctgtttctcctcaacaattcatcactgtagctaacgccattgatgctgcaaggcaatgggacggggacttagtagaagcaagatacataaaggatttggaagataatttgagtattatacgtcttagatttggggaaaattcgaagcctttattcagaaacagagaattcattgtctatgaacgtcgtgaaactatggatgatggaacactggtagtagcagtagcttcacttccaaaagagatagcagcaggtttgcacccaaagcaaaacaatgcaataagaggtttattgttgcaatctggatgggttgttgagaaaattgatcatgattcttgcatggtcacttacgttgtccagttggatccagcaggatggttaccaaaatgcttcgtgaatcggttgaacacaaagttggttatgatcattgataaccttaaaaagcaagtgctttctagccctaccaatagtgatgatagtacttgatttaattactacttttgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="103138" stop="105140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103437" g_stop="103619" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103620" i_stop="103704" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103705" g_stop="103951" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="430" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103952" i_stop="104019" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104020" g_stop="104178" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="589" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104179" i_stop="104260" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104261" g_stop="104407" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="736" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104408" i_stop="104694" i_length="287">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104695" g_stop="104840" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="882" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-U573068" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103437" e_stop="103619"/>
          <exon e_start="103705" e_stop="103951"/>
          <exon e_start="104020" e_stop="104178"/>
          <exon e_start="104261" e_stop="104407"/>
          <exon e_start="104695" e_stop="104840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAATCTAACATTGTACTTTGATCTAACAACCCCCACCCCCTTCTCAACCATATATATTCATCTATATTTTCCCTCATTTTGAGGAACAAAACTAAAATAAAAGCTCTCACATATCCTTTTTTTTGGTGGCTCAAGATGAGTAATCTTACTTCTAGTCCTGCACCTTGTAGTAGATCATGGTAAATTATACTACTATACTTTTTTTATTTATTTATATCGTTCATTCTATTTTTCAGATTGTCATATCAGACTCGTTAATTACAGGTCAATTAGTGAGGACTCATTGAGAAGATATGTGTTCTATGCAAGTGAAAATTGCATCCAGGAGTTGTTATCAGCTTCAGATTCAAAAAGCTGTAACGATGGCTGGAAAATACTCGGCGTAGATAACGGCGTTGAGATAGCTAAACGCCGTTCAGGTTCCCTTCACACTTTCCGTAGCCGTTGGTTACTCAAATCTGTTTCTCCTCAACAATTCATCACTGTAGCTAACGCCATTGATGCTGCAAGGGTAAGTTTGAATTTAAATTATTTCTAAAATAATGATATAGAGGTGAATTGATGAAATTAAAATGACAGCAATGGGACGGGGACTTAGTAGAAGCAAGATACATAAAGGATTTGGAAGATAATTTGAGTATTATACGTCTTAGATTTGGGGAAAATTCGAAGCCTTTATTCAGAAACAGAGAATTCATTGTCTATGAACGTCGTGAAACTATGGATGATGGAACACTGGTACGTATTATTTTAAAATTGCAAGTTGATAATAAACGCACATTTGATTTTTTTTTTAAAAAAATGTTCATTAATGTTATAGGTAGTAGCAGTAGCTTCACTTCCAAAAGAGATAGCAGCAGGTTTGCACCCAAAGCAAAACAATGCAATAAGAGGTTTATTGTTGCAATCTGGATGGGTTGTTGAGAAAATTGATCATGATTCTTGCATGGTCACTTACGTTGTCCAGGTAATGTTATTCACATGTATCTCGATTATTTCAAATTTTGAATATTATATATTACTTCTTAAAAAAGAAAAAATATGCACAGTGTGACTCTGTCCACCAAAATTTGGATAGATAAAGAGAAATTAATTATCTGATGGAGTATTTTTCTTTCTTTTTTGTCCTTGAAACGTGAATTATAGTTTTCATTGACTTAATTGACTATAGTTTACGCGTTTATTCATATATTTTGTAATTTTATTAAATAAAAATGGAAATTAAATTATCTTTTTTGGGATGAAAATTTGCAGTTGGATCCAGCAGGATGGTTACCAAAATGCTTCGTGAATCGGTTGAACACAAAGTTGGTTATGATCATTGATAACCTTAAAAAGCAAGTGCTTTCTAGCCCTACCAATAGTGATGATAGTACTTGATTTAATTACTACTTTTGTAC</genome_strand>
        <mrna_strand>GAAACAATCTAACATTGTACTTTGATCTAACAACCCCCACCCCCTTCTCAACCATATATATTCATCTATATTTTCCCTCATTTTGAGGAACAAAACTAAAATAAAAGCTCTCACATATCCTTTTTTTTGGTGGCTCAAGATGAGTAATCTTACTTCTAGTCCTGCACCTTGTAGTAGATCATG.....................................................................................GTCAATTAGTGAGGACTCATTGAGAAGATATGTGTTCTATGCAAGTGAAAATTGCATCCAGGAGTTGTTATCAGCTTCAGATTCAAAAAGCTGTAACGATGGCTGGAAAATACTCGGCGTAGATAACGGCGTTGAGATAGCTAAACGCCGTTCAGGTTCCCTTCACACTTTCCGTAGCCGTTGGTTACTCAAATCTGTTTCTCCTCAACAATTCATCACTGTAGCTAACGCCATTGATGCTGCAAGG....................................................................CAATGGGACGGGGACTTAGTAGAAGCAAGATACATAAAGGATTTGGAAGATAATTTGAGTATTATACGTCTTAGATTTGGGGAAAATTCGAAGCCTTTATTCAGAAACAGAGAATTCATTGTCTATGAACGTCGTGAAACTATGGATGATGGAACACTG..................................................................................GTAGTAGCAGTAGCTTCACTTCCAAAAGAGATAGCAGCAGGTTTGCACCCAAAGCAAAACAATGCAATAAGAGGTTTATTGTTGCAATCTGGATGGGTTGTTGAGAAAATTGATCATGATTCTTGCATGGTCACTTACGTTGTCCAG...............................................................................................................................................................................................................................................................................................TTGGATCCAGCAGGATGGTTACCAAAATGCTTCGTGAATCGGTTGAACACAAAGTTGGTTATGATCATTGATAACCTTAAAAAGCAAGTGCTTTCTAGCCCTACCAATAGTGATGATAGTACTTGATTTAATTACTACTTTTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582577" ref_strand="-" ref_description="SGN-U582577 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157354342|emb|CAO46943.1| (e_value=4e-46) unnamed; (*ATH) AT5G49760.1 (e_value=8e-42) | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr5:20233598-20238525 FORWARD | Aliases: K2I5.13, K2I5_13; (*SWP) sp|Q8LKZ1|NORK_PEA (e_value=4e-20) Nodulation receptor kinase OS=Pisum sativum GN=NORK; ">
      <seq>ggggctatgtcagcactcaggttaaaggaacaatgggctacatggatccagagtactacacaacacaacagttgactgagaagagtgatgtatatagctttggagttctgctgctggagcttataacagcacggagtcctattgtgagaggaaaatacattgtgaaggaattgaggcaagcaatagacaagtctaaagacatgtacaacattgatgagtttgttgatcctgctatcccctcaaacatgacacctataggcttcaggaagtttgttgatctagctttcatgtgcctcgaagatgcaggagctaataggccaacaatgggtgaggtagtgaaagagattgagaatatcatggaaatagatggattgaacagttgcgctgaatctagatcaacttctgtagccacgaaggaaccagcgcaacctttgatcatccttacagtgaggaaagcctaaatcgttacaatggggtcaccaattcgcgataaacatcaactcttctcatggaaccaggtgcattgtcatagaaatggaaagtcattcaagcaactgttgtgcttttgtgttagctgtgtacactctgtgcacctctgtcatatgtgtgcggcgtaaatagccttatactagaaatgattcaaaaatccatctaaggatcttcataaacagccttgtatgtttcaactgtttgcttctgataatccaggagctagactccgtggattcaaaatgagtgattttattgtattttggacttttagtcactcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="110237" stop="108487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109938" g_stop="109904" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109903" i_stop="109525" i_length="379">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109524" g_stop="108787" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="772" r_length="737" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U582577" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582577" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="109938" e_stop="109904"/>
          <exon e_start="109524" e_stop="108787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCTATGTCAGCACTCAGGTTAAAGGAACAATGGTAAGTCCAGACTTTACAAATGTTGTCATATGGTAGCATTTCTCAGTTTCTATATTTCTGAAGTAACTGGAAACAATTGTCCTTTAATCGTTATAGACTAGTGATCGTTTAGGTTCAATTCCTTAAAGGTTTAACATTGAAGTCGCGTCCTGATCAAATTACACACTGTGCTGAACATATATGAGTGAGTTTATATACAATGAAAGGAGTACACCGGTTAAACTGCTTAAAAAGATTCAAACATCAGTTGACTTGTGATTTTCACAGAGTAATAACTTAGGAAACTTGAAACCTGAACACTTGATATCGACATTGTTGAATAATTTTGTAACTGAACAATTTAATTAATACGAGCTGCTTTGTACATTTATCGGCTTAGGGCTACATGGATCCAGAGTACTACACAACACAACAGTTGACTGAGAAGAGTGATGTATATAGCTTTGGAGTTCTGCTGCTGGAGCTTATAACAGCACGGAGTCCTATTGTGAGAGGAAAATACATTGTGAAGGAATTGAGGCAAGCAATAGACAAGTCTAAAGACATGTACAACATTGATGAGTTTGTTGATCCTGCTATCCCCTCAAACATGACACCTATAAGCTTCAGGAAGTTTGTTGATCTAGCTTTCATGTGCCTCGAAGATGCAGGAGCTAATAGGCCAACAATGGGTGAGGTAGTGAAAGAGATTGAGAATATCATGGAAATAGATGGATTGAACAGTTGCGCTGAATCTAGATCAACTTCTGTGAGCCACGAAGGAACCAGCGCAACCTTTGATCATCCTTACAGTGAGGAAAGCCTAAATCGTTACAATGGGGTCACCAATTCGCGATAAACATCAACTCTTCTCATGGAACCAGGTGCATTGTCATAGAAATGGAAAGTCATTCAAGCAACTGTTGTGCTTTTGTGTTAGCTGTGTACACTCTGTGCACCTCTGTCATATGTGTGCGGCGTAAATAGCCTTATACTAGAAATGATTCAAAAATCCATCTAAGGATCTTCATAAACAGCCTTGTATGTTTCAACTGTTTGCTTCTGATAATCCAGGAGCTAGACTCCGTGGATTCAAAATGAGTGATTTTATTGTATTTTGGACTTTTAGTCACTCATT</genome_strand>
        <mrna_strand>GGGGCTATGTCAGCACTCAGGTTAAAGGAACAATG...........................................................................................................................................................................................................................................................................................................................................................................................GGCTACATGGATCCAGAGTACTACACAACACAACAGTTGACTGAGAAGAGTGATGTATATAGCTTTGGAGTTCTGCTGCTGGAGCTTATAACAGCACGGAGTCCTATTGTGAGAGGAAAATACATTGTGAAGGAATTGAGGCAAGCAATAGACAAGTCTAAAGACATGTACAACATTGATGAGTTTGTTGATCCTGCTATCCCCTCAAACATGACACCTATAGGCTTCAGGAAGTTTGTTGATCTAGCTTTCATGTGCCTCGAAGATGCAGGAGCTAATAGGCCAACAATGGGTGAGGTAGTGAAAGAGATTGAGAATATCATGGAAATAGATGGATTGAACAGTTGCGCTGAATCTAGATCAACTTCTGT-AGCCACGAAGGAACCAGCGCAACCTTTGATCATCCTTACAGTGAGGAAAGCCTAAATCGTTACAATGGGGTCACCAATTCGCGATAAACATCAACTCTTCTCATGGAACCAGGTGCATTGTCATAGAAATGGAAAGTCATTCAAGCAACTGTTGTGCTTTTGTGTTAGCTGTGTACACTCTGTGCACCTCTGTCATATGTGTGCGGCGTAAATAGCCTTATACTAGAAATGATTCAAAAATCCATCTAAGGATCTTCATAAACAGCCTTGTATGTTTCAACTGTTTGCTTCTGATAATCCAGGAGCTAGACTCCGTGGATTCAAAATGAGTGATTTTATTGTATTTTGGACTTTTAGTCACTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597712" ref_strand="+" ref_description="SGN-U597712 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|30695748|ref|NP_199787.2| (e_value=3e-24) receptor protein kinase-related [Arabidopsis thaliana]; (*ATH) AT5G49760.1 (e_value=1e-26) | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr5:20233598-20238525 FORWARD | Aliases: K2I5.13, K2I5_13; ">
      <seq>gcaatggacagatcaaaagacatgtataaccttcaagacattttggatcctgcagttcgcgcaggtgcaactcctagaagtttagagaagtttgtggatttagcactcaaatgtgttgaagaagaaggagccaacagaccttcaatgagtgaagtggtgaaagagatcgaaaatatcatggagatggcgggactgaacccgaatgcagactctgcatcttcttcagcaacttatgaaggaccaaacaaaggcatgaaccatccatatactgatgaaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="120210" stop="119331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119910" g_stop="119631" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U597712" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119910" e_stop="119631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGACAGATCAAAAGACATGTATAACCTTCAAGACATTTTGGATCCTGCAGTTCGCGCAGGTGCAACTCCTAGAAGTTTAGAGAAGTTTGTGGATTTAGCACTCAAATGTGTTGAAGAAGAAGGAGCCAACAGACCTTCAATGAGTGAAGTGGTGAAAGAGATCGAAAATATCATGGAGATGGCGGGACTGAACCCGAATGCAGACTCTGCATCTTCTTCAGCAACTTATGAAGGACCAAACAAAGGCATGAACCATCCATATACTGATGAAAGTC</genome_strand>
        <mrna_strand>GCAATGGACAGATCAAAAGACATGTATAACCTTCAAGACATTTTGGATCCTGCAGTTCGCGCAGGTGCAACTCCTAGAAGTTTAGAGAAGTTTGTGGATTTAGCACTCAAATGTGTTGAAGAAGAAGGAGCCAACAGACCTTCAATGAGTGAAGTGGTGAAAGAGATCGAAAATATCATGGAGATGGCGGGACTGAACCCGAATGCAGACTCTGCATCTTCTTCAGCAACTTATGAAGGACCAAACAAAGGCATGAACCATCCATATACTGATGAAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576495" ref_strand="+" ref_description="SGN-U576495 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157354342|emb|CAO46943.1| (e_value=1e-121) unnamed; (*ATH) AT5G49760.1 (e_value=3e-104) | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr5:20233598-20238525 FORWARD | Aliases: K2I5.13, K2I5_13; (*SWP) sp|Q9LX66|Y3290_ARATH (e_value=4e-32) Probable receptor-like protein kinase At3g46290 OS=Arabidopsis thaliana GN=At3g46290; ">
      <seq>cagctcattgatgtgcaaagaaatcttattgaatcatttactcaaagaccagggtacccctttcagataatgcttgcaggtaatcctttttgcaacgaaggaggagatgggacacaagattactgtgtcaaaactcaacaaactgagacatattcaaccccaccagagaattgcttgccaactgactgcagctctaatcgagtttctagtcctacctgtaaatgtgcttttccatatacaggaaacatagtcttcagagctccttccttttcaaacttgggaaatagaactacttatgagactctccaaaagtccttgatgcaaacctttcaaaaccgtcaactgcccgtggaatcagtggccctcagtaacccaacaaaaaatttggatgactaccttgtaatacacctgcaagtttttccatctacccaagattttttcaatcgaactggagtttctggaataggttctgtgcttagtaatcagactttcaagcccccatcatcatttggacctttcttcttcattggtgaaggctataaatactttgacggggcatcctccgaatcaaaaaactcaagcagtacaggcattattattggagcggcagttggtggctctgtcattgcaattatagcactaatcattggagtttatgctttccggcaaaagaaaagagctgaagatgctgcaaagaggagcgatccttttgcatcctgggactcgaacaaacatagtggtgctgtaccacagctgacgggagctagatttttctcatttgaggagctcaaaaaatggaccaataatttttcagaaaccaatgatattggttgtggtggttatggaaaggtttacagaggaactcttccaaatggagaattggttgcaattaaaagagctctacaagggtctatgcagggtgcacacgagttcaaaactgagatagagcttctctcaagggttcatcacaagaacgtcgttggccttgctggcttttgtttcgatcaagctgaacagatgcttgtgtacgagtacattcctaatggcaccttaaaagacggtctttcaggcaagactggcatcaggttagattggatgaggagactgaggatagccgttggagcagccagaggtttgcagtatttgcatgaccttgtcaatcctcccatcatacacaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="122554" stop="120100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122254" g_stop="122184" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122183" i_stop="122038" i_length="146">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122037" g_stop="121556" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="553" r_length="482" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121555" i_stop="121391" i_length="165">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121390" g_stop="121232" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="712" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121231" i_stop="121147" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121146" g_stop="121010" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="849" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121009" i_stop="120837" i_length="173">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120836" g_stop="120617" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="850" r_stop="1069" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120616" i_stop="120512" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="120511" g_stop="120400" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1070" r_stop="1181" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U576495" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1181</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122254" e_stop="122184"/>
          <exon e_start="122037" e_stop="121556"/>
          <exon e_start="121390" e_stop="121232"/>
          <exon e_start="121146" e_stop="121010"/>
          <exon e_start="120836" e_stop="120617"/>
          <exon e_start="120511" e_stop="120400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCATTGATGTGCAAAGAAATCTTATTGAATCATTTACTCAAAGACCAGGGTACCCCTTTCAGATAATGTAAGTTCTATTCCTTGATACTTCGAGCCATAAACCACTAAGTTGTTGAGAAACACATATGTTGGACAGTTCTGTTGCCTAGCTTATTATGAGATATGATTTATATCATTTTCATTAGCTCATTTCTTTACGTTTTCCCTCTGCAGGCTTGCAGGTAATCCTTTTTGCAACGAAGGAGGAGATGGGACACAAGATTACTGTGTCAAAACTCAACAAACTGAGACATATTCAACCCCACCAGAGAATTGCTTGCCAACTGACTGCAGCTCTAATCGAGTTTCTAGTCCTACCTGTAAATGTGCTTTTCCATATACAGGAAACATAGTCTTCAGAGCTCCTTCCTTTTCAAACTTGGGAAATAGAACTACTTATGAGACTCTCCAAAAGTCCTTGATGCAAACCTTTCAAAACCGTCAACTGCCCGTGGAATCAGTTTCCCTCAGTAACCCAACAAAAAATTTGGATGACTACCTTGTAATACACCTGCAAGTTTTTCCATCTACCCAAGATTTTTTCAATCGAACTGGAGTTTCTGGAATAGGTTTTGTGCTTAGTAATCAGACTTTCAAGCCCCCATCATCATTTGGACCTTTCTTCTTCATTGGTGAAGGCTATAAATACTTTGACGGTAATAAAACTAGTTCCTTTGCCTATTTATCACTCATCTCTCATCTACGACATATATGTGCAGCCTAATCTATAATTAATATAAATTGTAAGTGAGCCGTTGGAGCAGCATCTTAGTGAAGTTGATAGTTAAGAAGTCTGAGTCTATGTATATGCTGTTCTCCAGGGGCATCCTCCGAATCAAAAAACTCAAGCAGTACAGGCATTATTATTGGAGCGGCAGTTGGTGGCTCTGTCATTGCAATTATAGCACTAATCATTGGAGTTTATGCTTTCCGGCAAAAGAAAAGAGCTGAAGATGCTGCAAAGAGGAGCGATCCTTTTGGTAAGATTTGGAACTATCTAATTAAATCATTTACTTATTACTTCAATCTTATGGTAGATGTTTGCTATCTTTCTTATTAATGCAGCATCCTGGGACTCGAACAAACATAGTGGTGCTGTACCACAGCTGACGGGAGCTAGATTTTTCTCATTTGAGGAGCTCAAAAAATGGACCAATAATTTTTCAGAAACCAATGATATTGGTTGTGGTGGTTATGGAAAGGTTAGCTTTTAGTGACATGCGCAACCCCCTCCCCACCACCGTCATCACAACTGACAATATCAATATATGAAGAAGTTTGTTTGTACCAGCTTCTCTCTCCCCTGAAAAGAAAATTTCTTGACTGCAATTGGAACTGTATTGAGTTTTTAAACTGTAGAAGTGTGCCTCTCCAGGTTTACAGAGGAACTCTTCCAAATGGAGAATTGGTTGCAATTAAAAGAGCTCTACAAGGGTCTATGCAGGGTGCACACGAGTTCAAAACTGAGATAGAGCTTCTCTCAAGGGTTCATCACAAGAACGTCGTTGGCCTTGCTGGCTTTTGTTTCGATCAAGCTGAACAGATGCTTGTGTACGAGTACATTCCTAATGGCACCTTAAAAGACGGTCTTTCAGGTATATGTTGGTCCCTTCTTATTTATTCACTGAATCTAGCTCCTTTTAACTAGATCAAAACAGAAAATGTACATTTCGAAAATGTAATGAAATTTGCACTTGTAGGCAAGACTGGCATCAGGTTAGATTGGATGAGGAGACTGAGGATAGCCGTTGGAGCAGCCAGAGGTTTGCAGTATTTGCATGACCTTGTCAATCCTCCCATCATACACAGGGA</genome_strand>
        <mrna_strand>CAGCTCATTGATGTGCAAAGAAATCTTATTGAATCATTTACTCAAAGACCAGGGTACCCCTTTCAGATAAT..................................................................................................................................................GCTTGCAGGTAATCCTTTTTGCAACGAAGGAGGAGATGGGACACAAGATTACTGTGTCAAAACTCAACAAACTGAGACATATTCAACCCCACCAGAGAATTGCTTGCCAACTGACTGCAGCTCTAATCGAGTTTCTAGTCCTACCTGTAAATGTGCTTTTCCATATACAGGAAACATAGTCTTCAGAGCTCCTTCCTTTTCAAACTTGGGAAATAGAACTACTTATGAGACTCTCCAAAAGTCCTTGATGCAAACCTTTCAAAACCGTCAACTGCCCGTGGAATCAGTGGCCCTCAGTAACCCAACAAAAAATTTGGATGACTACCTTGTAATACACCTGCAAGTTTTTCCATCTACCCAAGATTTTTTCAATCGAACTGGAGTTTCTGGAATAGGTTCTGTGCTTAGTAATCAGACTTTCAAGCCCCCATCATCATTTGGACCTTTCTTCTTCATTGGTGAAGGCTATAAATACTTTGACG.....................................................................................................................................................................GGGCATCCTCCGAATCAAAAAACTCAAGCAGTACAGGCATTATTATTGGAGCGGCAGTTGGTGGCTCTGTCATTGCAATTATAGCACTAATCATTGGAGTTTATGCTTTCCGGCAAAAGAAAAGAGCTGAAGATGCTGCAAAGAGGAGCGATCCTTTTG.....................................................................................CATCCTGGGACTCGAACAAACATAGTGGTGCTGTACCACAGCTGACGGGAGCTAGATTTTTCTCATTTGAGGAGCTCAAAAAATGGACCAATAATTTTTCAGAAACCAATGATATTGGTTGTGGTGGTTATGGAAAG.............................................................................................................................................................................GTTTACAGAGGAACTCTTCCAAATGGAGAATTGGTTGCAATTAAAAGAGCTCTACAAGGGTCTATGCAGGGTGCACACGAGTTCAAAACTGAGATAGAGCTTCTCTCAAGGGTTCATCACAAGAACGTCGTTGGCCTTGCTGGCTTTTGTTTCGATCAAGCTGAACAGATGCTTGTGTACGAGTACATTCCTAATGGCACCTTAAAAGACGGTCTTTCAG.........................................................................................................GCAAGACTGGCATCAGGTTAGATTGGATGAGGAGACTGAGGATAGCCGTTGGAGCAGCCAGAGGTTTGCAGTATTTGCATGACCTTGTCAATCCTCCCATCATACACAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572562" ref_strand="+" ref_description="SGN-U572562 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157354342|emb|CAO46943.1| (e_value=4e-71) unnamed; (*ATH) AT1G79620.1 (e_value=2e-60) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, similar to receptor protein kinase GI:1389566 from (Arabidopsis thaliana) | chr1:29962455-29967198 REVERSE | Aliases: F20B17.5, F20B17_5; (*SWP) sp|Q06BH3|SRF1_ARATH (e_value=8e-24) Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1; ">
      <seq>gaggagtttgtgaagttgatcacatatatggtagtttctcaggcaatgataccgcgaattcttctctgttttctgtttgttttgatccatgttctgtcaatagcagcacggactaatcctgatgattctgctgctttacagtctctcaaggatagttggcagaatgttcctcccaattgggttggagcagatccctgtgggagtagttgggacggaattggatgcagaaattcacgagtggtttctattacattgtcaagtatgagtttggaaggtcagctatctggggatatccaaggattagctgaattggagactttggatctatcatacaacaaggagttgaaaggatctcttcctcagtctattggaaaattgacaaagctatcaaatttgatccttgttggttgtggattttcgggaccaataccagacaccataggatctctgacccggctggtttttctatctttgaactctaacaactttattggaggaatacctgctaccgttggctatctgacagagctttattggctggatttagctgacaataagcttacaggaacaattccagtctctaatgggagcagtcctggtcttgatttgcttgttcacactaaacacttgtacgcttctcctttttcttgatattgtttttgtctctcaactgcattttctaanattctacatttcttcagtcactttgggaagancagctatncnggtgaaattncagctggtcttttncattcnanctgtccctna</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="125478" stop="123239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125178" g_stop="125052" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125051" i_stop="124932" i_length="120">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.548" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124931" g_stop="124811" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="248" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124810" i_stop="124729" i_length="82">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124728" g_stop="124657" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="320" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124656" i_stop="124564" i_length="93">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124563" g_stop="124489" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="395" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124488" i_stop="124401" i_length="88">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124400" g_stop="124329" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="467" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124328" i_stop="123787" i_length="542">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123786" g_stop="123485" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="768" r_length="301" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U572562" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U572562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125178" e_stop="125052"/>
          <exon e_start="124931" e_stop="124811"/>
          <exon e_start="124728" e_stop="124657"/>
          <exon e_start="124563" e_stop="124489"/>
          <exon e_start="124400" e_stop="124329"/>
          <exon e_start="123786" e_stop="123485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGTTTGTGAAGTTGATCACATATATGGTAGTTTCTCAGGCAATGATACCGCGAATTCTTCTCTGTTTTCTGTTTGTTTTGATCCATGTTCTGTCAATAGCAGCACGGACTAATCCTGATGATTGTGAGTTGATTTTGCTGATATGTACAGTACAATATATTTGATTTAATCTTAGCTTTTCTTCGGAAAAGTTCATTTCTCATATGGTCAGTCGACTAATAGTTGAGCGATCTTATTATTCAGCTGCTGCTTTACAGTCTCTCAAGGATAGTTGGCAGAATGTTCCTCCCAATTGGGTTGGAGCAGATCCCTGTGGGAGTAGTTGGGACGGAATTGGATGCAGAAATTCACGAGTGGTTTCTATGTAAGAATTCGATGTGTATTCCTTTCTCAACTGCTTAAAGTTACATAATTCATAAGGTTGATGTCATTTTTCTCAATTTCAGTACATTGTCAAGTATGAGTTTGGAAGGTCAGCTATCTGGGGATATCCAAGGATTAGCTGAATTGGAGACTTTGTAGGTTTTCCTTTCATTTGTCATGTTTCTCGTTCACGCCGAGCAATACTTTGGGATAGTTTGTTAATTCTAATTATTGACTGCATCATATAGGGATCTATCATACAACAAGGAGTTGAAAGGATCTCTTCCTCAGTCTATTGGAAAATTGACAAAGCTATCAAATTTGTAAGTGAATGTGAATTAACATCTTGCATTCGTTTACCAGCTAATCTCGTGATGATATGCTAATGATCTTTTCTTAATTTCATGACAGGATCCTTGTTGGTTGTGGATTTTCGGGACCAATACCAGACACCATAGGATCTCTGACCCGGCTGGTTTTTCTGTAAGCATTCTGTGGTACTCGTTGTAGTTTGAATGCGTAACCAGTATGTGACATATCTTGCAAGAATGTAACGAAGTTTGCTCATTTATTTGGCTTAAGGTGTTTGACCTACATAAGATGATGGCTCAGGGATTTTATATTTATATCAGCTTAAACTATGATTTCTTAGCTTTTTTGTATTGTGTACATAAGACCTGATCATTTTTCATTTTTTGTTTGAACAAATGAAGTGATAAGCATCTCGAATGAACGATTTCATGACAGAAAAAGAAAATGGTCATAGATGAGCTGCTTAAAATGACTAATGTAATGTGTGCTTTGATGCTAGCTGTACTCAAAACTTTGGTTCATCTCTAAGAAAGGCAATACGATTTGAAACAGTGAAATCAGTTCATGAGGAGTTTAATTCATACTGCTTTTCTTGTGTTTACTAGCTTATCAAATCTGAATAGTTGTGTTTTTATCATATCTATCTGCATATGATTTCTTTCAATCCTTCTTCTCGTATACGCTCTAAAACAGTCCCACTCTGTACTCTGCAGATCTTTGAACTCTAACAACTTTATTGGAGGAATACCTGCTACCGTTGGCTATCTGACAGAGCTTTATTGGCTGGATTTAGCTGACAATAAGCTTACAGGAACAATTCCAGTCTCTAATGGGAGCAGTCCTGGTCTTGATTTGCTTGTTCACACTAAACACTTGTACGCTTCTCCTTTTTCTTGATATTGTTTTTGTCTCTCAACTGCATTTTCTAAGATTCTACATTTCTTCAGTCACTTTGGGAAGAATCAGCTAT-CCGGTGAAATTCCAGCTGGTCTTTTCCATTCTAATCTGTCCCTTA</genome_strand>
        <mrna_strand>GAGGAGTTTGTGAAGTTGATCACATATATGGTAGTTTCTCAGGCAATGATACCGCGAATTCTTCTCTGTTTTCTGTTTGTTTTGATCCATGTTCTGTCAATAGCAGCACGGACTAATCCTGATGATT........................................................................................................................CTGCTGCTTTACAGTCTCTCAAGGATAGTTGGCAGAATGTTCCTCCCAATTGGGTTGGAGCAGATCCCTGTGGGAGTAGTTGGGACGGAATTGGATGCAGAAATTCACGAGTGGTTTCTAT..................................................................................TACATTGTCAAGTATGAGTTTGGAAGGTCAGCTATCTGGGGATATCCAAGGATTAGCTGAATTGGAGACTTT.............................................................................................GGATCTATCATACAACAAGGAGTTGAAAGGATCTCTTCCTCAGTCTATTGGAAAATTGACAAAGCTATCAAATTT........................................................................................GATCCTTGTTGGTTGTGGATTTTCGGGACCAATACCAGACACCATAGGATCTCTGACCCGGCTGGTTTTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGAACTCTAACAACTTTATTGGAGGAATACCTGCTACCGTTGGCTATCTGACAGAGCTTTATTGGCTGGATTTAGCTGACAATAAGCTTACAGGAACAATTCCAGTCTCTAATGGGAGCAGTCCTGGTCTTGATTTGCTTGTTCACACTAAACACTTGTACGCTTCTCCTTTTTCTTGATATTGTTTTTGTCTCTCAACTGCATTTTCTAANATTCTACATTTCTTCAGTCACTTTGGGAAG-ANCAGCTATNCNGGTGAAATTNCAGCTGGTCTTTTNCATTC-NANCTGTCCCTNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582578" ref_strand="+" ref_description="SGN-U582578 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157354342|emb|CAO46943.1| (e_value=9e-46) unnamed; (*ATH) AT5G49760.1 (e_value=2e-45) | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr5:20233598-20238525 FORWARD | Aliases: K2I5.13, K2I5_13; (*SWP) sp|Q9LN59|WAKLK_ARATH (e_value=7e-22) Putative wall-associated receptor kinase-like 11 OS=Arabidopsis thaliana GN=WAKL11; ">
      <seq>tggcctatcaaaacttttgagagacgaagacaagggccatgtcaccactcaagtcaaaggtacattgggatatttggatcctgaatattacatgagccaacagttgactgagaaaagtgatgtatatagctttggggtggtgctgctcgagctgattactgcaagagctccaatagaacgaggaaaacacatcgtgagattggttgcagagaccatatatgattcaaaagataacagcaaactctaccaattaattgatccaagaataggtccaggttcaaaactcgaaggtgttgatagattattcacattgggaatgagatgtgtaaatgaatccggggctgagaggccttccatgggagaggctgtgaaagaaattgagagtattcttggactggccagcttgagcaagtatactgaaggcgacctcacttcgtctagctacgaggacacaactcaagtcagtcttgacgatttttataatgacaaggcttttgattacagtggtaaattcccttctggtggcatgaacaccacttattgaaactaccaacgactataaatttgagttacataagtttgttattattgagcatatgatgactatgaattacatttcgtttgattgtttattactagtgatgcttctgctctaatactagctatttcagaagtcagaattacaaatggcttcttcagattaagtgatcttcatattgatgtttgatcgatataaagtaagatcatatactgtacaggactacagatgagttttatagctcaaaactctaaactgtaacaaataaagaattttcttgttacactgccctttgcagctatgttaacaagcacaacaaatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="135627" stop="133843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135327" g_stop="135261" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135260" i_stop="134939" i_length="322">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.480" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134938" g_stop="134143" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="863" r_length="796" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U582578" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135327" e_stop="135261"/>
          <exon e_start="134938" e_stop="134143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCTATCAAAACTTTTGAGAGACGAAGACAAGGGCCATGTCACCACTCAAGTCAAAGGTACATTGGTGAGTATTACTACCTCAAACCTTGATGGATCAATTTGAGCTGTCTTATAATTCTTATGGATATGCATATATCAAACTCTACAACTTGAAGGCGATTGGTATATCTCCAAGGCTAATATTCTTGATCGTGAAATGACTGAACAACATGAAGAAGGATCATTTGGAATCCAATTAAAGAATTAGTCACCTCATGTTATTCATTGTTTAACATGGTGATATACTGATAAATGCAAATTTTGATTTCAAAGAACATTTGTAATTCCATAATGCACCATCCATACTGCTTCGAAATCCCATTTTCTAAGAATGTTCCTATGTATAGGGATATTTGGATCCTGAATATTACATGAGCCAACAGTTGACTGAGAAAAGTGATGTATATAGCTTTGGGGTGGTGCTGCTCGAGCTGATTACTGCAAGAGCTCCAATAGAACGAGGAAAACACATCGTGAGATTGGTTGCAGAGACCATATATGATTCAAAAGATAACAGCAAACTCTACCAATTAATTGATCCAAGAATAGGTCCAGGTTCAAAACTCGAAGGTGTTGATAGATTATTCACATTGGGAATGAGATGTGTAAATGAATCCGGGGCTGAGAGGCCTTCCATGGGAGAGGCTGTGAAAGAAATTGAGAGTATTCTTGGACTGGCCAGCTTGAGCAAGTATACTGAAGGCGACCTCACTTCGTCTAGCTACGAGGACACAACTCAAGTCAGTCTTGACGATTTTTATAATGACAAGGCTTTTGATTACAGTGGTAAATTCCCTTCTGGTGGCATGAACACCACTTATTGAAACTACCAACGACTATAAATTTGAGTTACATAAGTTTGTTATTATTGAGCATATGATGACTATGAATTACATTTCGTTTGATTGTTTATTACTAGTGATGCTTCTGCTCTAATACTAGCTATTTCAGAAGTCAGAATTACAAATGGCTTCTTCAGATTAAGTGATCTTCATATTGATGTTTGATCGATATAAAGTAAGATCATATACTGTACAGGACTACAGATGAGTTTTATAGCTCAAAACTCTAAACTGTAACAAATAAAGAATTTTCTTGTTACACTGCCCTTTGCAGCTATGTTAACAAGCACAACAAATTTAG</genome_strand>
        <mrna_strand>TGGCCTATCAAAACTTTTGAGAGACGAAGACAAGGGCCATGTCACCACTCAAGTCAAAGGTACATTG..................................................................................................................................................................................................................................................................................................................................GGATATTTGGATCCTGAATATTACATGAGCCAACAGTTGACTGAGAAAAGTGATGTATATAGCTTTGGGGTGGTGCTGCTCGAGCTGATTACTGCAAGAGCTCCAATAGAACGAGGAAAACACATCGTGAGATTGGTTGCAGAGACCATATATGATTCAAAAGATAACAGCAAACTCTACCAATTAATTGATCCAAGAATAGGTCCAGGTTCAAAACTCGAAGGTGTTGATAGATTATTCACATTGGGAATGAGATGTGTAAATGAATCCGGGGCTGAGAGGCCTTCCATGGGAGAGGCTGTGAAAGAAATTGAGAGTATTCTTGGACTGGCCAGCTTGAGCAAGTATACTGAAGGCGACCTCACTTCGTCTAGCTACGAGGACACAACTCAAGTCAGTCTTGACGATTTTTATAATGACAAGGCTTTTGATTACAGTGGTAAATTCCCTTCTGGTGGCATGAACACCACTTATTGAAACTACCAACGACTATAAATTTGAGTTACATAAGTTTGTTATTATTGAGCATATGATGACTATGAATTACATTTCGTTTGATTGTTTATTACTAGTGATGCTTCTGCTCTAATACTAGCTATTTCAGAAGTCAGAATTACAAATGGCTTCTTCAGATTAAGTGATCTTCATATTGATGTTTGATCGATATAAAGTAAGATCATATACTGTACAGGACTACAGATGAGTTTTATAGCTCAAAACTCTAAACTGTAACAAATAAAGAATTTTCTTGTTACACTGCCCTTTGCAGCTATGTTAACAAGCACAACAAATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604736" ref_strand="+" ref_description="SGN-U604736 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157354342|emb|CAO46943.1| (e_value=3e-26) unnamed; (*ATH) AT5G49760.1 (e_value=3e-27) | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr5:20233598-20238525 FORWARD | Aliases: K2I5.13, K2I5_13; (*SWP) sp|Q6R2K2|SRF4_ARATH (e_value=4e-11) Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4; ">
      <seq>tttcaacaggttttcttgtactcattcttttgtccatgcagcgtgaaggtaaaggataacttgctggatattaggaaggcgttatttacaagacttgcactggaatatagtagtttttcttttcaaacaaaaggttggggttttggatgttcaagaaaaaggttttgctatgctggaaatgggttcaagaagtcatgtcttcctcctgatttttgtatcccaaattctggctatactgggacaaacaaacagcaatgatgccactgctctatttgctcttaagtctagttggaataacttgccaccaaattgggaggggtcagatccttgtggtagcagctgggcaggacttatctgtgacaactcacgtgtaacctcaataaagttatcaggcatgggcttggaaggcaatcagtttggagatctttcatcattagctgcattgcaaattttggacctctcaaataatgttggtttgaaagggactctcccaccatcaattggaaatttgaagaatttgacaaccttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="144299" stop="141629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143999" g_stop="143740" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143739" i_stop="142731" i_length="1009">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.793" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142730" g_stop="142610" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="381" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142609" i_stop="142522" i_length="88">
            <donor d_prob="0.651" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142521" g_stop="142450" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="453" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142449" i_stop="142004" i_length="446">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142003" g_stop="141929" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="528" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-U604736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143999" e_stop="143740"/>
          <exon e_start="142730" e_stop="142610"/>
          <exon e_start="142521" e_stop="142450"/>
          <exon e_start="142003" e_stop="141929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACAGGTTTTCTTGTACTCATTCTTTTGTCCATGCAGCGTGAAGGTAAAGGATAACTTGCTGGATATTAGGAAGGCGTTATTTACAAGACTTGCACTGGAATATAGTAGTTTTTCTTTTCAAACAAAAGGTTGGGGTTTTGGATGTTCAAGAAAAAGGTTTTGCTATGCTGGAAATGGGTTCAAGAAGTCATGTCTTCCTCCTGATTTTTGTATCCCAAATTCTGGCTATACTGGGACAAACAAACAGCAATGATGGTACTGTTTTTTTTCTTTTCTGATTATCCATTTAAGATTACTTGATGCACTTTCTTGTTTTTCTTGGTTAAATTCCTACATGAAACTGTTTCAGATTTGATTGTGGCTGAGTCTATAACCTAGGACTTTGATAGCTAGACTTTGAGTGTATTCCAGATTCCTAACTGTTCAAAAGTACAAACAGCTGAATTGTTTTTGGCGTTCGTGAAATAGAAACTAATAACTATCGTATTCCATCCTGCATCCTGGGCGTCCTGGTTTATTCTATTTTTGGAGTTTAAATAAAGCATGTTGTTTTTCTTTCTTCGATGTCACATTTGTGTGGGCTGAATTTTGATTTGACTAGTTTTTCGTTGAACTTTGAGTTGGAGTGACTAATTCATCTGAAAAGTTTGAGGTGCCTACGGTCTCAGCCTATAGTTCTTGCTGATTGGTAGTGGACTGCTGGCACGGTTGCTATATGCATGCTTGTGGGAGCTAGTATATGGAAAAAAAATACCAAAGTTAGAGAACAGGAAGGGATAAAACTAAGTCATACAAACGATGAATGAGAGAACTTTATGATCTAGCAGTTCTTTAGCATTACTGGAGACTGAATGATGGGCAAAATGCTAGGCAACACATCCCAGAGGTACTCAGAGTCGTGTTTTCCTTGTTGGGGTCTTTTTCTGCCTAATCTCCCAATTTAGAACATAGGATTTTTTGAACTATTCTCTTCTTGTGGTTAGTTAACCAAATTACTGATCAACCGAAAAGACGTCCAAAGTTAGCAATGCAGATATAGAGTATAGATTAGCAACAAACTTTGAGGAAGCTGCTATACTATCTAAATTTATCGTCATGGATTTTCTGTTGAAAAAAGTTATTGGAGTACTTGTCGATTGGAATGCTTATTTAGTTTTGTGCTTTTTGTAAACTTGAGCTTTAAGAGTGCATTAGTAGTTAGTGAAACATCTACCTTTTTGATAGTACAGTACAGAGGCCATTTATAATTCCTTTTTTTATGCAGCCACTGCTCTATTTGCTCTTAAGTCTAGTTGGAATAACTTGCCACCAAATTGGGAGGGGTCAGATCCTTGTGGTAGCAGCTGGGCAGGACTTATCTGTGACAACTCACGTGTAACCTCAATGTATATCCTCGGTATTTCAAATTTCTGATTGCTCTGTAGCTTGCCTACCTTCGCTTCCTCATTGTTTTCTTTAAGTTTCCTTCTGCAGAAAGTTATCAGGCATGGGCTTGGAAGGCAATCAGTTTGGAGATCTTTCATCATTAGCTGCATTGCAAATTTTGTATGTTTTTTAGTTTGTTTTTCTGTCTTTGAATGTTAGGATATTGATGATAAGATTCCATAATCATTTTCAGTTTATGTATTTCTCCAACTCTTATCTGAAGAACAACTGTAGTTTCATGTAAAATCATCAAGAATGCTGCAGCTAGTTCTCAAAGTAAATTAATGCAATATCCATGTCTTCTTTGCAACATATATTAGTCTGGCCTCATCTCTTCTTCATCCCAAACTAATTCCTGCAAGTATTTGTAAGTTGTATACGTTCAGTCAAAAGATTTACTAAAAGGAATAATTTCTGCCATTCGGATAAGAGGATATCCACTGCTATGACTAATTCTAACCTGTTTCAACCCCCAAATTAACCTATTCAAATGATTTATCACTTTGCTTCGTTTATTTTAGCAAATTTGGTTTTTGAGGCACGCATAATGAATTTCGTTGTTGTAGGGACCTCTCAAATAATGTTGGTTTGAAAGGGACTCTCCCACCATCAATTGGAAATTTGAAGAATTTGACAACCTT</genome_strand>
        <mrna_strand>TTTCAACAGGTTTTCTTGTACTCATTCTTTTGTCCATGCAGCGTGAAGGTAAAGGATAACTTGCTGGATATTAGGAAGGCGTTATTTACAAGACTTGCACTGGAATATAGTAGTTTTTCTTTTCAAACAAAAGGTTGGGGTTTTGGATGTTCAAGAAAAAGGTTTTGCTATGCTGGAAATGGGTTCAAGAAGTCATGTCTTCCTCCTGATTTTTGTATCCCAAATTCTGGCTATACTGGGACAAACAAACAGCAATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGCTCTATTTGCTCTTAAGTCTAGTTGGAATAACTTGCCACCAAATTGGGAGGGGTCAGATCCTTGTGGTAGCAGCTGGGCAGGACTTATCTGTGACAACTCACGTGTAACCTCAAT........................................................................................AAAGTTATCAGGCATGGGCTTGGAAGGCAATCAGTTTGGAGATCTTTCATCATTAGCTGCATTGCAAATTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTCTCAAATAATGTTGGTTTGAAAGGGACTCTCCCACCATCAATTGGAAATTTGAAGAATTTGACAACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>28</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4374" PGL_stop="5628"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4374" e_stop="4891"/>
            <exon e_start="5033" e_stop="5628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.998"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="4374" e_stop="4891" e_length="518"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4892" i_stop="5032" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="5033" e_stop="5628" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4374" stop="4891"/>
              <exon start="5033" stop="5628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570635" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTTCCGAAGCCGAGAAAAGTTCTAGATCTTCCATGGGTTTCTTTACCAAAATCTTTGGTTAATTTAAGTCTATCTGGGTGCAATCTATCTGACGTTGCTTTTCCAAGGGATTTCAGTAATTTAATGTTGTTGCAGAACCTAGACCTCAGTAAAAATCCAATCAGTTGTCTTCCAGATTGCGTCAGAACTCTGTCCAGGCTCAACAGTCTTGAATTAGGTTCTTGTACAATGCTTAAATTACTCATAGACCTACCTCGCATCCACAATTTGAGGTTGGGACACTGCACTTCCCTAGAAAGAGTAACATATCTATCAGAAGTGTGCCGTGCAGTAGTTTACCATTTAAATGGCTGTAAAGCACTCACTGATATGGAGGGAAACTTCAAGTTGGAAGCCATGGGAGGAATTGAGATAGAAAAGAAGTCATTGGAATTAAGCATGTGGGATTCTGTCGGAAGCTCCGAAGTGAAATTGTATAACAATTCAACTAATACAGAAAGTAGAGGACCAGTAAAG : GTGTTGTTTGAAAGGGGGATGATCAGCATATATCTTCCGGGGAGCAAGGTTCCTAATTGGTTTTGTTACAAGAGTGCTGGAGCAACTCTATCTTTCGCTGTCCCTTCACCTCCTGATCTCAAGATCCAGGGCATAACTGTGTGCTCAGTGTACACAATTGACTGGAAAGTCTGGATTGCGGGTATCGAATTTTATTTGATAATCCATAATGAGCAGAAGAATGTGAAGCTGATTTATAGCCCGACTTGCTATGGTCTTCCTGAAGCCCAAAACGAAATGTTATGGTTCACCCATTTGATATTTCTGAGTCAGCTGGATGCTGGTGACACCTTGAATGTCTCAGTTGTTACTATGGAGGGTTTTAGCATCAAGGAAATGGGTATTCACTTGATGCATGATGAGCAAGTAGACATGATTTTGAACTCAAACAGTCATGAAATGCAGAAAGATTATCCTTATCAGGGGATGACGCCTGCCAAACGTCAAGGGCTTGTAGATTTATACTGTTTTGGCCATATCGGGCCTGGATTGGACTACATTTTGCCATATATACCTTGAGATCCATGAATGGGAATTCTTTGAAGAAATGTGTTCTG</gDNA_template>
            <first_frame> G  F  R  S  R  E  K  F  *  I  F  H  G  F  L  Y  Q  N  L  W  L  I  *  V  Y  L  G  A  I  Y  L  T  L  L  F  Q  G  I  S  V  I  *  C  C  C  R  T  *  T  S  V  K  I  Q  S  V  V  F  Q  I  A  S  E  L  C  P  G  S  T  V  L  N  *  V  L  V  Q  C  L  N  Y  S  *  T  Y  L  A  S  T  I  *  G  W  D  T  A  L  P  *  K  E  *  H  I  Y  Q  K  C  A  V  Q  *  F  T  I  *  M  A  V  K  H  S  L  I  W  R  E  T  S  S  W  K  P  W  E  E  L  R  *  K  R  S  H  W  N  *  A  C  G  I  L  S  E  A  P  K  *  N  C  I  T  I  Q  L  I  Q  K  V  E  D  Q  *  R :   C  C  L  K  G  G  *  S  A  Y  I  F  R  G  A  R  F  L  I  G  F  V  T  R  V  L  E  Q  L  Y  L  S  L  S  L  H  L  L  I  S  R  S  R  A  *  L  C  A  Q  C  T  Q  L  T  G  K  S  G  L  R  V  S  N  F  I  *  *  S  I  M  S  R  R  M  *  S  *  F  I  A  R  L  A  M  V  F  L  K  P  K  T  K  C  Y  G  S  P  I  *  Y  F  *  V  S  W  M  L  V  T  P  *  M  S  Q  L  L  L  W  R  V  L  A  S  R  K  W  V  F  T  *  C  M  M  S  K  *  T  *  F  *  T  Q  T  V  M  K  C  R  K  I  I  L  I  R  G  *  R  L  P  N  V  K  G  L  *  I  Y  T  V  L  A  I  S  G  L  D  W  T  T  F  C  H  I  Y  L  E  I  H  E  W  E  F  F  E  E  M  C  S  </first_frame>
            <second_frame>  A  S  E  A  E  K  S  S  R  S  S  M  G  F  F  T  K  I  F  G  *  F  K  S  I  W  V  Q  S  I  *  R  C  F  S  K  G  F  Q  *  F  N  V  V  A  E  P  R  P  Q  *  K  S  N  Q  L  S  S  R  L  R  Q  N  S  V  Q  A  Q  Q  S  *  I  R  F  L  Y  N  A  *  I  T  H  R  P  T  S  H  P  Q  F  E  V  G  T  L  H  F  P  R  K  S  N  I  S  I  R  S  V  P  C  S  S  L  P  F  K  W  L  *  S  T  H  *  Y  G  G  K  L  Q  V  G  S  H  G  R  N  *  D  R  K  E  V  I  G  I  K  H  V  G  F  C  R  K  L  R  S  E  I  V  *  Q  F  N  *  Y  R  K  *  R  T  S  K   : G  V  V  *  K  G  D  D  Q  H  I  S  S  G  E  Q  G  S  *  L  V  L  L  Q  E  C  W  S  N  S  I  F  R  C  P  F  T  S  *  S  Q  D  P  G  H  N  C  V  L  S  V  H  N  *  L  E  S  L  D  C  G  Y  R  I  L  F  D  N  P  *  *  A  E  E  C  E  A  D  L  *  P  D  L  L  W  S  S  *  S  P  K  R  N  V  M  V  H  P  F  D  I  S  E  S  A  G  C  W  *  H  L  E  C  L  S  C  Y  Y  G  G  F  *  H  Q  G  N  G  Y  S  L  D  A  *  *  A  S  R  H  D  F  E  L  K  Q  S  *  N  A  E  R  L  S  L  S  G  D  D  A  C  Q  T  S  R  A  C  R  F  I  L  F  W  P  Y  R  A  W  I  G  L  H  F  A  I  Y  T  L  R  S  M  N  G  N  S  L  K  K  C  V  L </second_frame>
            <third_frame>   L  P  K  P  R  K  V  L  D  L  P  W  V  S  L  P  K  S  L  V  N  L  S  L  S  G  C  N  L  S  D  V  A  F  P  R  D  F  S  N  L  M  L  L  Q  N  L  D  L  S  K  N  P  I  S  C  L  P  D  C  V  R  T  L  S  R  L  N  S  L  E  L  G  S  C  T  M  L  K  L  L  I  D  L  P  R  I  H  N  L  R  L  G  H  C  T  S  L  E  R  V  T  Y  L  S  E  V  C  R  A  V  V  Y  H  L  N  G  C  K  A  L  T  D  M  E  G  N  F  K  L  E  A  M  G  G  I  E  I  E  K  K  S  L  E  L  S  M  W  D  S  V  G  S  S  E  V  K  L  Y  N  N  S  T  N  T  E  S  R  G  P  V  K  :  V  L  F  E  R  G  M  I  S  I  Y  L  P  G  S  K  V  P  N  W  F  C  Y  K  S  A  G  A  T  L  S  F  A  V  P  S  P  P  D  L  K  I  Q  G  I  T  V  C  S  V  Y  T  I  D  W  K  V  W  I  A  G  I  E  F  Y  L  I  I  H  N  E  Q  K  N  V  K  L  I  Y  S  P  T  C  Y  G  L  P  E  A  Q  N  E  M  L  W  F  T  H  L  I  F  L  S  Q  L  D  A  G  D  T  L  N  V  S  V  V  T  M  E  G  F  S  I  K  E  M  G  I  H  L  M  H  D  E  Q  V  D  M  I  L  N  S  N  S  H  E  M  Q  K  D  Y  P  Y  Q  G  M  T  P  A  K  R  Q  G  L  V  D  L  Y  C  F  G  H  I  G  P  G  L  D  Y  I  L  P  Y  I  P  *  D  P  *  M  G  I  L  *  R  N  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4376" stop="4891"/>
                    <exon start="5033" stop="5590"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1071</number_coding_nucleotides>
                  <number_encoded_amino_acids>357</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPKPRKVLDLPWVSLPKSLVNLSLSGCNLSDVAFPRDFSNLMLLQNLDLSKNPISCLPDCVRTLSRLNSLELGSCTMLKLLIDLPRIHNLRLGHCTSLERVTYLSEVCRAVVYHLNGCKALTDMEGNFKLEAMGGIEIEKKSLELSMWDSVGSSEVKLYNNSTNTESRGPVKVLFERGMISIYLPGSKVPNWFCYKSAGATLSFAVPSPPDLKIQGITVCSVYTIDWKVWIAGIEFYLIIHNEQKNVKLIYSPTCYGLPEAQNEMLWFTHLIFLSQLDAGDTLNVSVVTMEGFSIKEMGIHLMHDEQVDMILNSNSHEMQKDYPYQGMTPAKRQGLVDLYCFGHIGPGLDYILPYIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16459" PGL_stop="15402"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16459" e_stop="15402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="16459" e_stop="15402" e_length="1058"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16459" stop="15402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAAGTCAAATAATGTCATATAAAATGAAATGAATGGATCGAATAATAATTTCTTGTCAAACTCCAAAAAAATCATTACATCAGGAAAACAGTCTCTCTTATCCACTCAAAATTAGGATTGTTTGGCCTGCAGCCTCTCTCCCCTTGAGAGATGAATCTTGCTCCAATCTCATTCAATGTCTCATCTTCTACAGTTCCAAGTTTCCATATAGCTTCTTCACATTCACAGTCCTTGTCGTTGAGGAGGAGTATTACTCCTTTAGCAATTGTATCCAGAAAAGTTATTCCAGCGCGAGACCGAGTCATAGATTTTGGAAAATACAAAGGTAAAATGCTGGGAACACTCCCATCTAAGTACCTCAAATGGGTGACAAAGAATCTCCGAGCTCGAGATTTTGAAGAATGGGCTCAGCTAGCAGATCAAGTCCTCTCTGACCCTATCTATAGGGACCGAATTGAATGGGAGTTTGCCCAAAATCTCCTCAACGGCGACGTTTCACCGGCACGGACGCAGAGTTCCGTTTCGGAGTTGCTGGAAATCAGCACCAGATTCCGTTGGGACAATGAGGATAAGTTGGGTTGGAGCAAAATTGATTTTGAGTTACTTGGGACCTCTAAAGGTGGTCGAATACCAAGGCTTTCTGATTCCCCCAATAATTCAATTAGGGTTGAAGATAAAAAAAGGGTACAGATGGAGTTGATAGTAGTCAGGATGATGGCGAAAAAGACAATAGGGAGAGAAGACGGGAAAGGATAAAGTTACAGAGGAGACCGAATGAATCTGGCCAACGTTCAACTAGTGTTACACAGAGAAGAGCGAATTCTGATCATTTCAATCCACTCAAATCAGACCCAATTGGCGCCACTAATAATAACACTAGTAGCGGCAGAACGGAAACTCCGAGTCGTTTTCCGGGTCGTGAATCCCTGTTGAAGAAAGCATTGTCCAGAAAAAATACCTCAAATTAATGAATTTCTGATACCTGGAGGAGATATGTTTAACCTTAACCAAAATAATCAACATTTCTTTCTTCATGAAACTATACTAGTTAATGAT</gDNA_template>
            <first_frame> I  K  S  N  N  V  I  *  N  E  M  N  G  S  N  N  N  F  L  S  N  S  K  K  I  I  T  S  G  K  Q  S  L  L  S  T  Q  N  *  D  C  L  A  C  S  L  S  P  L  E  R  *  I  L  L  Q  S  H  S  M  S  H  L  L  Q  F  Q  V  S  I  *  L  L  H  I  H  S  P  C  R  *  G  G  V  L  L  L  *  Q  L  Y  P  E  K  L  F  Q  R  E  T  E  S  *  I  L  E  N  T  K  V  K  C  W  E  H  S  H  L  S  T  S  N  G  *  Q  R  I  S  E  L  E  I  L  K  N  G  L  S  *  Q  I  K  S  S  L  T  L  S  I  G  T  E  L  N  G  S  L  P  K  I  S  S  T  A  T  F  H  R  H  G  R  R  V  P  F  R  S  C  W  K  S  A  P  D  S  V  G  T  M  R  I  S  W  V  G  A  K  L  I  L  S  Y  L  G  P  L  K  V  V  E  Y  Q  G  F  L  I  P  P  I  I  Q  L  G  L  K  I  K  K  G  Y  R  W  S  *  *  *  S  G  *  W  R  K  R  Q  *  G  E  K  T  G  K  D  K  V  T  E  E  T  E  *  I  W  P  T  F  N  *  C  Y  T  E  K  S  E  F  *  S  F  Q  S  T  Q  I  R  P  N  W  R  H  *  *  *  H  *  *  R  Q  N  G  N  S  E  S  F  S  G  S  *  I  P  V  E  E  S  I  V  Q  K  K  Y  L  K  L  M  N  F  *  Y  L  E  E  I  C  L  T  L  T  K  I  I  N  I  S  F  F  M  K  L  Y  *  L  M   </first_frame>
            <second_frame>  S  S  Q  I  M  S  Y  K  M  K  *  M  D  R  I  I  I  S  C  Q  T  P  K  K  S  L  H  Q  E  N  S  L  S  Y  P  L  K  I  R  I  V  W  P  A  A  S  L  P  L  R  D  E  S  C  S  N  L  I  Q  C  L  I  F  Y  S  S  K  F  P  Y  S  F  F  T  F  T  V  L  V  V  E  E  E  Y  Y  S  F  S  N  C  I  Q  K  S  Y  S  S  A  R  P  S  H  R  F  W  K  I  Q  R  *  N  A  G  N  T  P  I  *  V  P  Q  M  G  D  K  E  S  P  S  S  R  F  *  R  M  G  S  A  S  R  S  S  P  L  *  P  Y  L  *  G  P  N  *  M  G  V  C  P  K  S  P  Q  R  R  R  F  T  G  T  D  A  E  F  R  F  G  V  A  G  N  Q  H  Q  I  P  L  G  Q  *  G  *  V  G  L  E  Q  N  *  F  *  V  T  W  D  L  *  R  W  S  N  T  K  A  F  *  F  P  Q  *  F  N  *  G  *  R  *  K  K  G  T  D  G  V  D  S  S  Q  D  D  G  E  K  D  N  R  E  R  R  R  E  R  I  K  L  Q  R  R  P  N  E  S  G  Q  R  S  T  S  V  T  Q  R  R  A  N  S  D  H  F  N  P  L  K  S  D  P  I  G  A  T  N  N  N  T  S  S  G  R  T  E  T  P  S  R  F  P  G  R  E  S  L  L  K  K  A  L  S  R  K  N  T  S  N  *  *  I  S  D  T  W  R  R  Y  V  *  P  *  P  K  *  S  T  F  L  S  S  *  N  Y  T  S  *  *  </second_frame>
            <third_frame>   Q  V  K  *  C  H  I  K  *  N  E  W  I  E  *  *  F  L  V  K  L  Q  K  N  H  Y  I  R  K  T  V  S  L  I  H  S  K  L  G  L  F  G  L  Q  P  L  S  P  *  E  M  N  L  A  P  I  S  F  N  V  S  S  S  T  V  P  S  F  H  I  A  S  S  H  S  Q  S  L  S  L  R  R  S  I  T  P  L  A  I  V  S  R  K  V  I  P  A  R  D  R  V  I  D  F  G  K  Y  K  G  K  M  L  G  T  L  P  S  K  Y  L  K  W  V  T  K  N  L  R  A  R  D  F  E  E  W  A  Q  L  A  D  Q  V  L  S  D  P  I  Y  R  D  R  I  E  W  E  F  A  Q  N  L  L  N  G  D  V  S  P  A  R  T  Q  S  S  V  S  E  L  L  E  I  S  T  R  F  R  W  D  N  E  D  K  L  G  W  S  K  I  D  F  E  L  L  G  T  S  K  G  G  R  I  P  R  L  S  D  S  P  N  N  S  I  R  V  E  D  K  K  R  V  Q  M  E  L  I  V  V  R  M  M  A  K  K  T  I  G  R  E  D  G  K  G  *  S  Y  R  G  D  R  M  N  L  A  N  V  Q  L  V  L  H  R  E  E  R  I  L  I  I  S  I  H  S  N  Q  T  Q  L  A  P  L  I  I  T  L  V  A  A  E  R  K  L  R  V  V  F  R  V  V  N  P  C  *  R  K  H  C  P  E  K  I  P  Q  I  N  E  F  L  I  P  G  G  D  M  F  N  L  N  Q  N  N  Q  H  F  F  L  H  E  T  I  L  V  N  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16310" stop="15702"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMNLAPISFNVSSSTVPSFHIASSHSQSLSLRRSITPLAIVSRKVIPARDRVIDFGKYKGKMLGTLPSKYLKWVTKNLRARDFEEWAQLADQVLSDPIYRDRIEWEFAQNLLNGDVSPARTQSSVSELLEISTRFRWDNEDKLGWSKIDFELLGTSKGGRIPRLSDSPNNSIRVEDKKRVQMELIVVRMMAKKTIGREDGKG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23837" PGL_stop="22960"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23837" e_stop="23697"/>
            <exon e_start="23607" e_stop="22960"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.931" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23837" e_stop="23697" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.931" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23696" i_stop="23608" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="23607" e_stop="22960" e_length="648"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23837" stop="23697"/>
              <exon start="23607" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569460" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATAAGGTGATGATGCCTCCACTTATTCAGGACATGGGGAAAGAAATTATTCGTCGAGAATCACAAGATGATCCCGAGAGATTGTTGTGCAAATGGTTGAACCAATGCGGTCTGTCACATGACTTGACAGAAAACAGT : GGAACTGATGCAGATGGAGTAGACCTCCAAGGCACGCATCTGCCAGAAGATGGTCTTGTCCCAGCACTTGGTCCTAATGCTGCAAAAAGACCATATTATCAAGATTTTCCAGAAATAGCTGTTCTGCCATACCTAGGTAATTCGTTGAAAAGGCGTTTTGTTGGACTTCTTTCGACATTCCCCTTATCTGGTGGCCTCAAAAGATTCTTCCCATGATGAGAAAAGTACTTGTGAAGACGCCTTCTTTCTTTCGGAAAAACCAACATTTTACTACTTAATCTTGTGGAGCTAGAAGATATACATGAGTGTTGTGTGAGGCGGCGGGGCTTCAATAAGGATCATTATCTGATAATATCTGAGCATTTCTTTTGCTTGACATACTGTCTTAGTTGCACAAATTTGTTAGTTGCAGATGTATATTCTGTCCTGTTCTTTTTCATCAGCTTCAGGTGGGCAATGGTGTAAATTATGTTTTATTAACTCATTGTACAGTCATAGGATCATTTCTTGCTAGCTGCATAGTTTACTTCAGCAAACAGTTCACTGGAAGGAACTAAAAATGTAATCTTTAACCATTCCTTTTTAGTCTCTCAAAAAATATCTGAAGTTTTACCATTCCTTTTATATTTCTAATTAAATTTTATTGAC</gDNA_template>
            <first_frame> E  N  K  V  M  M  P  P  L  I  Q  D  M  G  K  E  I  I  R  R  E  S  Q  D  D  P  E  R  L  L  C  K  W  L  N  Q  C  G  L  S  H  D  L  T  E  N  S  :  G  T  D  A  D  G  V  D  L  Q  G  T  H  L  P  E  D  G  L  V  P  A  L  G  P  N  A  A  K  R  P  Y  Y  Q  D  F  P  E  I  A  V  L  P  Y  L  G  N  S  L  K  R  R  F  V  G  L  L  S  T  F  P  L  S  G  G  L  K  R  F  F  P  *  *  E  K  Y  L  *  R  R  L  L  S  F  G  K  T  N  I  L  L  L  N  L  V  E  L  E  D  I  H  E  C  C  V  R  R  R  G  F  N  K  D  H  Y  L  I  I  S  E  H  F  F  C  L  T  Y  C  L  S  C  T  N  L  L  V  A  D  V  Y  S  V  L  F  F  F  I  S  F  R  W  A  M  V  *  I  M  F  Y  *  L  I  V  Q  S  *  D  H  F  L  L  A  A  *  F  T  S  A  N  S  S  L  E  G  T  K  N  V  I  F  N  H  S  F  L  V  S  Q  K  I  S  E  V  L  P  F  L  L  Y  F  *  L  N  F  I  D </first_frame>
            <second_frame>  K  I  R  *  *  C  L  H  L  F  R  T  W  G  K  K  L  F  V  E  N  H  K  M  I  P  R  D  C  C  A  N  G  *  T  N  A  V  C  H  M  T  *  Q  K  T  V :   E  L  M  Q  M  E  *  T  S  K  A  R  I  C  Q  K  M  V  L  S  Q  H  L  V  L  M  L  Q  K  D  H  I  I  K  I  F  Q  K  *  L  F  C  H  T  *  V  I  R  *  K  G  V  L  L  D  F  F  R  H  S  P  Y  L  V  A  S  K  D  S  S  H  D  E  K  S  T  C  E  D  A  F  F  L  S  E  K  P  T  F  Y  Y  L  I  L  W  S  *  K  I  Y  M  S  V  V  *  G  G  G  A  S  I  R  I  I  I  *  *  Y  L  S  I  S  F  A  *  H  T  V  L  V  A  Q  I  C  *  L  Q  M  Y  I  L  S  C  S  F  S  S  A  S  G  G  Q  W  C  K  L  C  F  I  N  S  L  Y  S  H  R  I  I  S  C  *  L  H  S  L  L  Q  Q  T  V  H  W  K  E  L  K  M  *  S  L  T  I  P  F  *  S  L  K  K  Y  L  K  F  Y  H  S  F  Y  I  S  N  *  I  L  L   </second_frame>
            <third_frame>   K  *  G  D  D  A  S  T  Y  S  G  H  G  E  R  N  Y  S  S  R  I  T  R  *  S  R  E  I  V  V  Q  M  V  E  P  M  R  S  V  T  *  L  D  R  K  Q   : W  N  *  C  R  W  S  R  P  P  R  H  A  S  A  R  R  W  S  C  P  S  T  W  S  *  C  C  K  K  T  I  L  S  R  F  S  R  N  S  C  S  A  I  P  R  *  F  V  E  K  A  F  C  W  T  S  F  D  I  P  L  I  W  W  P  Q  K  I  L  P  M  M  R  K  V  L  V  K  T  P  S  F  F  R  K  N  Q  H  F  T  T  *  S  C  G  A  R  R  Y  T  *  V  L  C  E  A  A  G  L  Q  *  G  S  L  S  D  N  I  *  A  F  L  L  L  D  I  L  S  *  L  H  K  F  V  S  C  R  C  I  F  C  P  V  L  F  H  Q  L  Q  V  G  N  G  V  N  Y  V  L  L  T  H  C  T  V  I  G  S  F  L  A  S  C  I  V  Y  F  S  K  Q  F  T  G  R  N  *  K  C  N  L  *  P  F  L  F  S  L  S  K  N  I  *  S  F  T  I  P  F  I  F  L  I  K  F  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23837" stop="23697"/>
                    <exon start="23607" stop="23392"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENKVMMPPLIQDMGKEIIRRESQDDPERLLCKWLNQCGLSHDLTENSGTDADGVDLQGTHLPEDGLVPALGPNAAKRPYYQDFPEIAVLPYLGNSLKRRFVGLLSTFPLSGGLKRFFP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23373" stop="23143"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLLSFGKTNILLLNLVELEDIHECCVRRRGFNKDHYLIISEHFFCLTYCLSCTNLLVADVYSVLFFFISFRWAMV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="28119" PGL_stop="24009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28119" e_stop="27438"/>
            <exon e_start="24801" e_stop="24009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.917" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28119" e_stop="27438" e_length="682"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.917">
            <gDNA_intron_boundary i_start="27437" i_stop="24802" i_length="2636"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="24801" e_stop="24009" e_length="793"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28119" stop="27745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28104" stop="27438"/>
              <exon start="24801" stop="24009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAACTCGTCATTTTTTTCCCTTCACGCGGGCCTTTCCATTGACTTGAGTCCTCAAAGTTCTCAGTTTTCCTATTTTCCTTGTCTAGTTTTCATTGTCAAAATCTCAATTGGATCATTATCCTCTTTGTCTTTGCATCAACTCTCAGTTGTGTCATCGTTTTCTTGGACTTTTTTCAATGGCAACCCCACAAAACCGTTATTCTTTCCATGTTTTCTTGAGTTTTAGAGGCGAAGACACCCGGAAAAACTTTACTGATCATCTCTACACAGCTCTCATCAACGCTGGAATTCGAACTTTTCGAGATGATGACGAAATCCGCAGGGGAGAAAACATAGAATCTGAACTGCAAAAGGGTATTCGAGAATCCAAGATTTCACTAATTGTCTTCTCTAAAGACTACGCTTCTTCAAGATGGTGTCTTGATGAGCTTGTCAACATTCTTGATCGAAGAAAGAAAGAGGGTCATACTGTCTTGCCTGTTTTTTACACTGTCAGCCCTGAGGATGTTCAGAACCAAAGTGGAAGTTTTGCTGAAGCTTTTGTGAATCATGAAAAGAGAGGAAATGCAGAGAGTGGAGAGAAAAGAAAGGAATGGATGGAGAAGATGGAGAAATGGAGATTAGCTCTGAAGGAAGTTGCTGAATTGGAAGGAATGTGCTTAGCCAAAGAAGTAGACGG : GCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCAGCTGGATGTCTTAGATTCACTTATTGGAACAAGGGATTGGTTTTATCCGGGGAGTAAAATTCTCATTACGACAAGGTGTGAGAAACTATTGAAGTCCTATGAGAGGCACATGCTATTCAAGATAAAGGAACTTGGAGATGACGAGTCTCTAAAGCTCTTCAGTTGGTATGCTTTTGCACAAGACCACCCATTAGAAGAGTTCAAGATGCTTTCAACAGAAGCAATACAGCATTGCTGTGGGCTTCCGTTAGCTCTTTATGATTTGGGTTCATTTCTTTCAGGGAGAGGTACGGATATATGGAGGAGTAAATTGCAGAAATTGGAAGCAATCCCTCATAGCAGAGTTCAAAAGAATCTTGAG</gDNA_template>
            <first_frame> Q  K  L  V  I  F  F  P  S  R  G  P  F  H  *  L  E  S  S  K  F  S  V  F  L  F  S  L  S  S  F  H  C  Q  N  L  N  W  I  I  I  L  F  V  F  A  S  T  L  S  C  V  I  V  F  L  D  F  F  Q  W  Q  P  H  K  T  V  I  L  S  M  F  S  *  V  L  E  A  K  T  P  G  K  T  L  L  I  I  S  T  Q  L  S  S  T  L  E  F  E  L  F  E  M  M  T  K  S  A  G  E  K  T  *  N  L  N  C  K  R  V  F  E  N  P  R  F  H  *  L  S  S  L  K  T  T  L  L  Q  D  G  V  L  M  S  L  S  T  F  L  I  E  E  R  K  R  V  I  L  S  C  L  F  F  T  L  S  A  L  R  M  F  R  T  K  V  E  V  L  L  K  L  L  *  I  M  K  R  E  E  M  Q  R  V  E  R  K  E  R  N  G  W  R  R  W  R  N  G  D  *  L  *  R  K  L  L  N  W  K  E  C  A  *  P  K  K  *  T   : G  M  R  Q  N  S  S  K  R  S  L  R  R  Y  S  K  D  *  I  A  Q  Y  L  V  Y  L  H  T  Q  L  D  *  R  L  E  *  R  T  L  T  H  G  Y  R  M  N  P  V  K  L  A  L  G  *  S  V  D  L  V  A  L  E  R  L  L  L  L  K  *  L  T  T  L  I  M  I  D  L  M  G  V  A  F  L  Q  M  S  E  K  S  L  R  N  I  Q  M  V  R  F  I  C  K  N  K  F  S  K  V  F  *  K  A  E  R  K  K  Y  T  M  L  M  K  E  L  S  K  *  K  M  L  L  A  T  K  R  F  L  L  Y  L  M  M  W  I  S  W  M  S  *  I  H  L  L  E  Q  G  I  G  F  I  R  G  V  K  F  S  L  R  Q  G  V  R  N  Y  *  S  P  M  R  G  T  C  Y  S  R  *  R  N  L  E  M  T  S  L  *  S  S  S  V  G  M  L  L  H  K  T  T  H  *  K  S  S  R  C  F  Q  Q  K  Q  Y  S  I  A  V  G  F  R  *  L  F  M  I  W  V  H  F  F  Q  G  E  V  R  I  Y  G  G  V  N  C  R  N  W  K  Q  S  L  I  A  E  F  K  R  I  L   </first_frame>
            <second_frame>  K  N  S  S  F  F  S  L  H  A  G  L  S  I  D  L  S  P  Q  S  S  Q  F  S  Y  F  P  C  L  V  F  I  V  K  I  S  I  G  S  L  S  S  L  S  L  H  Q  L  S  V  V  S  S  F  S  W  T  F  F  N  G  N  P  T  K  P  L  F  F  P  C  F  L  E  F  *  R  R  R  H  P  E  K  L  Y  *  S  S  L  H  S  S  H  Q  R  W  N  S  N  F  S  R  *  *  R  N  P  Q  G  R  K  H  R  I  *  T  A  K  G  Y  S  R  I  Q  D  F  T  N  C  L  L  *  R  L  R  F  F  K  M  V  S  *  *  A  C  Q  H  S  *  S  K  K  E  R  G  S  Y  C  L  A  C  F  L  H  C  Q  P  *  G  C  S  E  P  K  W  K  F  C  *  S  F  C  E  S  *  K  E  R  K  C  R  E  W  R  E  K  K  G  M  D  G  E  D  G  E  M  E  I  S  S  E  G  S  C  *  I  G  R  N  V  L  S  Q  R  S  R  R  :  A  *  G  K  I  H  P  K  D  H  *  G  D  T  Q  K  I  E  S  H  S  T  *  C  T  F  I  H  S  W  T  R  G  S  S  E  G  H  *  L  M  V  T  G  *  I  Q  *  S  W  H  W  D  D  L  W  T  W  W  R  W  K  D  Y  C  C  *  S  S  L  Q  L  *  L  *  *  I  *  W  E  L  L  S  C  K  C  Q  R  N  L  *  E  T  S  K  W  S  G  L  F  A  K  T  N  F  R  K  Y  F  E  R  Q  K  G  K  N  I  Q  C  *  *  R  N  C  Q  N  E  R  C  Y  W  Q  Q  K  G  F  Y  C  I  *  *  C  G  S  A  G  C  L  R  F  T  Y  W  N  K  G  L  V  L  S  G  E  *  N  S  H  Y  D  K  V  *  E  T  I  E  V  L  *  E  A  H  A  I  Q  D  K  G  T  W  R  *  R  V  S  K  A  L  Q  L  V  C  F  C  T  R  P  P  I  R  R  V  Q  D  A  F  N  R  S  N  T  A  L  L  W  A  S  V  S  S  L  *  F  G  F  I  S  F  R  E  R  Y  G  Y  M  E  E  *  I  A  E  I  G  S  N  P  S  *  Q  S  S  K  E  S  *  </second_frame>
            <third_frame>   K  T  R  H  F  F  P  F  T  R  A  F  P  L  T  *  V  L  K  V  L  S  F  P  I  F  L  V  *  F  S  L  S  K  S  Q  L  D  H  Y  P  L  C  L  C  I  N  S  Q  L  C  H  R  F  L  G  L  F  S  M  A  T  P  Q  N  R  Y  S  F  H  V  F  L  S  F  R  G  E  D  T  R  K  N  F  T  D  H  L  Y  T  A  L  I  N  A  G  I  R  T  F  R  D  D  D  E  I  R  R  G  E  N  I  E  S  E  L  Q  K  G  I  R  E  S  K  I  S  L  I  V  F  S  K  D  Y  A  S  S  R  W  C  L  D  E  L  V  N  I  L  D  R  R  K  K  E  G  H  T  V  L  P  V  F  Y  T  V  S  P  E  D  V  Q  N  Q  S  G  S  F  A  E  A  F  V  N  H  E  K  R  G  N  A  E  S  G  E  K  R  K  E  W  M  E  K  M  E  K  W  R  L  A  L  K  E  V  A  E  L  E  G  M  C  L  A  K  E  V  D  G :   H  E  A  K  F  I  Q  K  I  I  K  E  I  L  K  R  L  N  R  T  V  L  S  V  P  S  Y  T  V  G  L  E  A  R  V  K  D  I  N  S  W  L  Q  D  E  S  S  E  V  G  I  G  M  I  C  G  L  G  G  V  G  K  T  T  V  A  K  V  A  Y  N  S  N  Y  D  R  F  D  G  S  C  F  L  A  N  V  R  E  I  S  E  K  H  P  N  G  Q  V  Y  L  Q  K  Q  I  F  E  S  I  L  K  G  R  K  E  K  I  Y  N  A  D  E  G  I  V  K  M  K  D  A  I  G  N  K  K  V  F  I  V  F  D  D  V  D  Q  L  D  V  L  D  S  L  I  G  T  R  D  W  F  Y  P  G  S  K  I  L  I  T  T  R  C  E  K  L  L  K  S  Y  E  R  H  M  L  F  K  I  K  E  L  G  D  D  E  S  L  K  L  F  S  W  Y  A  F  A  Q  D  H  P  L  E  E  F  K  M  L  S  T  E  A  I  Q  H  C  C  G  L  P  L  A  L  Y  D  L  G  S  F  L  S  G  R  G  T  D  I  W  R  S  K  L  Q  K  L  E  A  I  P  H  S  R  V  Q  K  N  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28030" stop="27438"/>
                    <exon start="24801" stop="24009"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1386</number_coding_nucleotides>
                  <number_encoded_amino_acids>462</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLSKSQLDHYPLCLCINSQLCHRFLGLFSMATPQNRYSFHVFLSFRGEDTRKNFTDHLYTALINAGIRTFRDDDEIRRGENIESELQKGIRESKISLIVFSKDYASSRWCLDELVNILDRRKKEGHTVLPVFYTVSPEDVQNQSGSFAEAFVNHEKRGNAESGEKRKEWMEKMEKWRLALKEVAELEGMCLAKEVDGHEAKFIQKIIKEILKRLNRTVLSVPSYTVGLEARVKDINSWLQDESSEVGIGMICGLGGVGKTTVAKVAYNSNYDRFDGSCFLANVREISEKHPNGQVYLQKQIFESILKGRKEKIYNADEGIVKMKDAIGNKKVFIVFDDVDQLDVLDSLIGTRDWFYPGSKILITTRCEKLLKSYERHMLFKIKELGDDESLKLFSWYAFAQDHPLEEFKMLSTEAIQHCCGLPLALYDLGSFLSGRGTDIWRSKLQKLEAIPHSRVQKNLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25055" e_stop="24194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="25055" e_stop="24194" e_length="862"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25055" stop="24194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAAAATTCATTGATTTAGCATTAAGAGATTGCTTCAAAGTATACTTTCACATGTTCTCTTAACTAGGCACCTAACCAGGTTATTTTGTTTATTGATGATTAATATGACAGATCATCTTGGTGTGTTATATTTGCTCTAAAAGTATTACCATATCAGTGAACTCTTTTTATTTATTGTCCAGTACTTGGCAAGTTGCAGTGCTTTACTGAATTTTCATCTTGTTTTGTCTCTGACATTTACACTGCACCTCAGGCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCAGCTGGATGTCTTAGATTCACTTATTGGAACAAGGGATTGGTTTTATCCGGGGAGTAAAATTCTCATTACGACAAGGTGTGAGAAACTATTGAAGTCCTATGAGAGGCACATGCTATTCAAGATAAAGGAACTTGGAGATGACGAGTCTCTAAAGCTCTTCAGTTGGTATGCTTTTG</gDNA_template>
            <first_frame> C  K  I  H  *  F  S  I  K  R  L  L  Q  S  I  L  S  H  V  L  L  T  R  H  L  T  R  L  F  C  L  L  M  I  N  M  T  D  H  L  G  V  L  Y  L  L  *  K  Y  Y  H  I  S  E  L  F  L  F  I  V  Q  Y  L  A  S  C  S  A  L  L  N  F  H  L  V  L  S  L  T  F  T  L  H  L  R  H  E  A  K  F  I  Q  K  I  I  K  E  I  L  K  R  L  N  R  T  V  L  S  V  P  S  Y  T  V  G  L  E  A  R  V  K  D  I  N  S  W  L  Q  D  E  S  S  E  V  G  I  G  M  I  C  G  L  G  G  V  G  K  T  T  V  A  K  V  A  Y  N  S  N  Y  D  R  F  D  G  S  C  F  L  A  N  V  R  E  I  S  E  K  H  P  N  G  Q  V  Y  L  Q  K  Q  I  F  E  S  I  L  K  G  R  K  E  K  I  Y  N  A  D  E  G  I  V  K  M  K  D  A  I  G  N  K  K  V  F  I  V  F  D  D  V  D  Q  L  D  V  L  D  S  L  I  G  T  R  D  W  F  Y  P  G  S  K  I  L  I  T  T  R  C  E  K  L  L  K  S  Y  E  R  H  M  L  F  K  I  K  E  L  G  D  D  E  S  L  K  L  F  S  W  Y  A  F  </first_frame>
            <second_frame>  V  K  F  I  D  L  A  L  R  D  C  F  K  V  Y  F  H  M  F  S  *  L  G  T  *  P  G  Y  F  V  Y  *  *  L  I  *  Q  I  I  L  V  C  Y  I  C  S  K  S  I  T  I  S  V  N  S  F  Y  L  L  S  S  T  W  Q  V  A  V  L  Y  *  I  F  I  L  F  C  L  *  H  L  H  C  T  S  G  M  R  Q  N  S  S  K  R  S  L  R  R  Y  S  K  D  *  I  A  Q  Y  L  V  Y  L  H  T  Q  L  D  *  R  L  E  *  R  T  L  T  H  G  Y  R  M  N  P  V  K  L  A  L  G  *  S  V  D  L  V  A  L  E  R  L  L  L  L  K  *  L  T  T  L  I  M  I  D  L  M  G  V  A  F  L  Q  M  S  E  K  S  L  R  N  I  Q  M  V  R  F  I  C  K  N  K  F  S  K  V  F  *  K  A  E  R  K  K  Y  T  M  L  M  K  E  L  S  K  *  K  M  L  L  A  T  K  R  F  L  L  Y  L  M  M  W  I  S  W  M  S  *  I  H  L  L  E  Q  G  I  G  F  I  R  G  V  K  F  S  L  R  Q  G  V  R  N  Y  *  S  P  M  R  G  T  C  Y  S  R  *  R  N  L  E  M  T  S  L  *  S  S  S  V  G  M  L  L </second_frame>
            <third_frame>   *  N  S  L  I  *  H  *  E  I  A  S  K  Y  T  F  T  C  S  L  N  *  A  P  N  Q  V  I  L  F  I  D  D  *  Y  D  R  S  S  W  C  V  I  F  A  L  K  V  L  P  Y  Q  *  T  L  F  I  Y  C  P  V  L  G  K  L  Q  C  F  T  E  F  S  S  C  F  V  S  D  I  Y  T  A  P  Q  A  *  G  K  I  H  P  K  D  H  *  G  D  T  Q  K  I  E  S  H  S  T  *  C  T  F  I  H  S  W  T  R  G  S  S  E  G  H  *  L  M  V  T  G  *  I  Q  *  S  W  H  W  D  D  L  W  T  W  W  R  W  K  D  Y  C  C  *  S  S  L  Q  L  *  L  *  *  I  *  W  E  L  L  S  C  K  C  Q  R  N  L  *  E  T  S  K  W  S  G  L  F  A  K  T  N  F  R  K  Y  F  E  R  Q  K  G  K  N  I  Q  C  *  *  R  N  C  Q  N  E  R  C  Y  W  Q  Q  K  G  F  Y  C  I  *  *  C  G  S  A  G  C  L  R  F  T  Y  W  N  K  G  L  V  L  S  G  E  *  N  S  H  Y  D  K  V  *  E  T  I  E  V  L  *  E  A  H  A  I  Q  D  K  G  T  W  R  *  R  V  S  K  A  L  Q  L  V  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24914" stop="24195"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYYHISELFLFIVQYLASCSALLNFHLVLSLTFTLHLRHEAKFIQKIIKEILKRLNRTVLSVPSYTVGLEARVKDINSWLQDESSEVGIGMICGLGGVGKTTVAKVAYNSNYDRFDGSCFLANVREISEKHPNGQVYLQKQIFESILKGRKEKIYNADEGIVKMKDAIGNKKVFIVFDDVDQLDVLDSLIGTRDWFYPGSKILITTRCEKLLKSYERHMLFKIKELGDDESLKLFSWYAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="31634" PGL_stop="28505"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31634" e_stop="31261"/>
            <exon e_start="28709" e_stop="28505"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31634" e_stop="31261" e_length="374"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.991">
            <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28709" e_stop="28505" e_length="205"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31634" stop="31261"/>
              <exon start="28709" stop="28505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586196" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGTAATATAGAAGGCCCAAGCCCAAGGAGCCAATCTTGAAAGTCCTGTAAGGCAGTGCTCCAAATCAATTTGGGTGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG : GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTATATATCTACTCTCTACTTTCTCTCC</gDNA_template>
            <first_frame> W  V  I  *  K  A  Q  A  Q  G  A  N  L  E  S  P  V  R  Q  C  S  K  S  I  W  V  K  I  K  K  R  K  K  N  R  S  K  M  G  K  P  L  G  T  T  G  E  F  F  R  R  R  D  E  W  R  K  H  P  M  L  S  N  Q  F  R  H  A  F  P  G  L  G  I  A  V  V  A  F  S  I  Y  C  V  G  E  F  A  Y  N  K  M  S  T  P  S  H  S  T  S  S  A  A  A  S  H  S  H  *  D  S  K  W  V  V  L  V  V  N  P  N  C  L  F  W :   *  G  G  S  A  T  T  G  M  T  I  Q  F  S  R  V  F  F  S  V  I  I  N  Q  *  D  T  *  Q  T  C  P  H  V  A  S  I  F  L  R  L  V  L  *  Q  D  *  *  A  V  C  F  T  I  Y  V  L  V  F  Y  I  S  T  L  Y  F  L  S </first_frame>
            <second_frame>  G  *  Y  R  R  P  K  P  K  E  P  I  L  K  V  L  *  G  S  A  P  N  Q  F  G  *  K  S  R  R  G  R  R  T  D  R  K  W  G  S  H  W  E  P  P  E  S  F  S  G  E  G  T  S  G  G  S  I  L  C  C  P  I  S  S  A  T  L  S  L  V  L  A  S  L  L  *  P  S  V  S  I  V  S  A  N  L  P  I  T  R  C  L  L  L  L  T  P  P  L  P  P  L  L  L  T  L  T  E  I  R  N  G  S  C  L  *  *  T  P  I  V  S  F   : G  E  V  V  V  L  Q  L  G  *  L  Y  S  S  V  V  F  F  S  Q  *  S  S  I  N  K  I  L  N  K  H  V  H  M  L  P  Q  F  F  *  D  L  C  C  N  K  I  N  E  Q  F  A  L  L  F  M  F  W  F  S  I  Y  L  L  S  T  F  S   </second_frame>
            <third_frame>   G  N  I  E  G  P  S  P  R  S  Q  S  *  K  S  C  K  A  V  L  Q  I  N  L  G  E  N  Q  E  E  E  E  E  Q  I  E  N  G  E  A  I  G  N  H  R  R  V  F  Q  E  K  G  R  V  E  E  A  S  Y  V  V  Q  S  V  P  P  R  F  P  W  S  W  H  R  C  C  S  L  Q  Y  L  L  C  R  R  I  C  L  *  Q  D  V  Y  S  F  S  L  H  L  F  R  R  C  F  S  L  S  L  R  F  E  M  G  R  A  C  S  E  P  Q  L  S  L  L  :  V  R  W  *  C  Y  N  W  D  D  Y  T  V  Q  S  C  F  F  L  S  N  H  Q  S  I  R  Y  L  T  N  M  S  T  C  C  L  N  F  F  E  T  C  V  V  T  R  L  M  S  S  L  L  Y  Y  L  C  S  G  F  L  Y  I  Y  S  L  L  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31622" stop="31308"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAQAQGANLESPVRQCSKSIWVKIKKRKKNRSKMGKPLGTTGEFFRRRDEWRKHPMLSNQFRHAFPGLGIAVVAFSIYCVGEFAYNKMSTPSHSTSSAAASHSH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31593" stop="31366"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSCKAVLQINLGENQEEEEEQIENGEAIGNHRRVFQEKGRVEEASYVVQSVPPRFPWSWHRCCSLQYLLCRRICL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28697" stop="28506"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CYNWDDYTVQSCFFLSNHQSIRYLTNMSTCCLNFFETCVVTRLMSSLLYYLCSGFLYIYSLLSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31594" e_stop="30813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="31594" e_stop="30813" e_length="782"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31594" stop="30813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTCCTGTAAGGCAGTGCTCCAAATCAATTTGGGTGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCT</gDNA_template>
            <first_frame> K  V  L  *  G  S  A  P  N  Q  F  G  *  K  S  R  R  G  R  R  T  D  R  K  W  G  S  H  W  E  P  P  E  S  F  S  G  E  G  T  S  G  G  S  I  L  C  C  P  I  S  S  A  T  L  S  L  V  L  A  S  L  L  *  P  S  V  S  I  V  S  A  N  L  P  I  T  R  C  L  L  L  L  T  P  P  L  P  P  L  L  L  T  L  T  E  I  R  N  G  S  C  L  *  *  T  P  I  V  S  F  G  T  T  S  F  *  F  C  D  S  L  L  S  Q  P  T  V  *  S  L  C  F  V  E  Y  N  L  M  C  L  K  E  V  G  F  V  N  F  I  T  F  M  K  W  V  S  L  I  C  *  *  S  E  W  G  S  L  F  F  V  C  I  I  L  C  *  E  M  S  L  L  I  L  D  R  C  L  I  K  F  G  W  V  G  V  S  *  S  G  V  A  S  P  R  L  L  L  L  S  P  I  A  M  P  I  V  F  F  L  I  E  V  Y  R  L  Y  Y  N  D  *  I  *  C  L  L  L  I  C  S  Y  Q  L  *  V  L  L  S  T  L  S  K  I  K  L  *  V  L  L  G   </first_frame>
            <second_frame>  K  S  C  K  A  V  L  Q  I  N  L  G  E  N  Q  E  E  E  E  E  Q  I  E  N  G  E  A  I  G  N  H  R  R  V  F  Q  E  K  G  R  V  E  E  A  S  Y  V  V  Q  S  V  P  P  R  F  P  W  S  W  H  R  C  C  S  L  Q  Y  L  L  C  R  R  I  C  L  *  Q  D  V  Y  S  F  S  L  H  L  F  R  R  C  F  S  L  S  L  R  F  E  M  G  R  A  C  S  E  P  Q  L  S  L  L  V  R  P  L  S  D  F  V  I  L  Y  Y  L  N  Q  L  F  E  V  C  V  S  W  N  T  I  *  C  A  *  K  K  W  G  L  *  I  L  L  L  L  *  N  G  S  H  *  Y  A  N  D  P  N  G  G  H  F  F  L  F  V  *  S  Y  V  K  K  C  L  C  *  Y  W  I  D  A  *  L  N  L  G  G  L  V  F  P  E  V  V  *  P  P  P  D  S  S  F  *  A  P  *  L  C  Q  L  C  F  F  S  S  R  C  I  D  Y  T  T  M  I  E  S  S  A  F  F  *  Y  V  H  I  N  F  E  F  F  *  V  P  C  Q  K  L  N  C  E  F  S  W  V  </second_frame>
            <third_frame>   S  P  V  R  Q  C  S  K  S  I  W  V  K  I  K  K  R  K  K  N  R  S  K  M  G  K  P  L  G  T  T  G  E  F  F  R  R  R  D  E  W  R  K  H  P  M  L  S  N  Q  F  R  H  A  F  P  G  L  G  I  A  V  V  A  F  S  I  Y  C  V  G  E  F  A  Y  N  K  M  S  T  P  S  H  S  T  S  S  A  A  A  S  H  S  H  *  D  S  K  W  V  V  L  V  V  N  P  N  C  L  F  W  Y  D  L  F  L  I  L  *  F  F  I  I  S  T  N  C  L  K  S  V  F  R  G  I  Q  F  D  V  L  E  R  S  G  V  C  E  F  Y  Y  F  Y  E  M  G  L  I  D  M  L  M  I  R  M  G  V  T  F  F  C  L  Y  N  P  M  L  R  N  V  F  A  D  T  G  *  M  L  D  *  I  W  V  G  W  C  F  L  K  W  C  S  L  P  Q  T  P  P  S  K  P  H  S  Y  A  N  C  V  F  S  H  R  G  V  *  I  I  L  Q  *  L  N  L  V  P  S  F  D  M  F  I  S  T  L  S  S  F  E  Y  L  V  K  N  *  T  V  S  S  L  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31592" stop="31308"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPVRQCSKSIWVKIKKRKKNRSKMGKPLGTTGEFFRRRDEWRKHPMLSNQFRHAFPGLGIAVVAFSIYCVGEFAYNKMSTPSHSTSSAAASHSH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31593" stop="31366"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSCKAVLQINLGENQEEEEEQIENGEAIGNHRRVFQEKGRVEEASYVVQSVPPRFPWSWHRCCSLQYLLCRRICL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31235" stop="31038"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFIISTNCLKSVFRGIQFDVLERSGVCEFYYFYEMGLIDMLMIRMGVTFFCLYNPMLRNVFADTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="33961" PGL_stop="33792"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33961" e_stop="33792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="33961" e_stop="33792" e_length="170"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33961" stop="33792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGTCGTCAAGGTGGACACAATAGAAAGGCATGTTCAAATTATCCTGTGCAAAAACAATGATTTCATAATGTTACATTTGTTATTGTGTTGTTTTGAATGTTAGAAACATGTTTTGTTTTATTGAGTGCAGTTGTTATCATTTACATTTATAAAGTTTGATTTCGTAAA</gDNA_template>
            <first_frame> D  V  V  K  V  D  T  I  E  R  H  V  Q  I  I  L  C  K  N  N  D  F  I  M  L  H  L  L  L  C  C  F  E  C  *  K  H  V  L  F  Y  *  V  Q  L  L  S  F  T  F  I  K  F  D  F  V   </first_frame>
            <second_frame>  M  S  S  R  W  T  Q  *  K  G  M  F  K  L  S  C  A  K  T  M  I  S  *  C  Y  I  C  Y  C  V  V  L  N  V  R  N  M  F  C  F  I  E  C  S  C  Y  H  L  H  L  *  S  L  I  S  *  </second_frame>
            <third_frame>   C  R  Q  G  G  H  N  R  K  A  C  S  N  Y  P  V  Q  K  Q  *  F  H  N  V  T  F  V  I  V  L  F  *  M  L  E  T  C  F  V  L  L  S  A  V  V  I  I  Y  I  Y  K  V  *  F  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0043D23.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="35435" PGL_stop="40597"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35435" e_stop="35716"/>
            <exon e_start="35799" e_stop="35876"/>
            <exon e_start="36111" e_stop="36166"/>
            <exon e_start="36731" e_stop="36810"/>
            <exon e_start="36973" e_stop="37055"/>
            <exon e_start="37810" e_stop="37887"/>
            <exon e_start="38129" e_stop="38197"/>
            <exon e_start="39114" e_stop="39182"/>
            <exon e_start="39254" e_stop="39300"/>
            <exon e_start="40156" e_stop="40246"/>
            <exon e_start="40356" e_stop="40597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.822" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.578" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.767" acc_prob="0.016" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35435" e_stop="35716" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.822" acc_prob="0.985">
            <gDNA_intron_boundary i_start="35717" i_stop="35798" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35799" e_stop="35876" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.892" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35877" i_stop="36110" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36111" e_stop="36166" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="36167" i_stop="36730" i_length="564"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36731" e_stop="36810" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.578" acc_prob="0.981">
            <gDNA_intron_boundary i_start="36811" i_stop="36972" i_length="162"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36973" e_stop="37055" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="37056" i_stop="37809" i_length="754"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="37810" e_stop="37887" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.948">
            <gDNA_intron_boundary i_start="37888" i_stop="38128" i_length="241"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38129" e_stop="38197" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38198" i_stop="39113" i_length="916"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39114" e_stop="39182" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.767" acc_prob="0.016">
            <gDNA_intron_boundary i_start="39183" i_stop="39253" i_length="71"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="39254" e_stop="39300" e_length="47"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39301" i_stop="40155" i_length="855"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="40156" e_stop="40246" e_length="91"/>
          </exon>
          <intron i_serial="10" don_prob="0.941" acc_prob="1.000">
            <gDNA_intron_boundary i_start="40247" i_stop="40355" i_length="109"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="40356" e_stop="40597" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35435" stop="35716"/>
              <exon start="35799" stop="35876"/>
              <exon start="36111" stop="36166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35451" stop="35716"/>
              <exon start="35799" stop="35876"/>
              <exon start="36111" stop="36166"/>
              <exon start="36731" stop="36810"/>
              <exon start="36973" stop="37055"/>
              <exon start="37810" stop="37887"/>
              <exon start="38129" stop="38197"/>
              <exon start="39114" stop="39182"/>
              <exon start="39254" stop="39300"/>
              <exon start="40156" stop="40246"/>
              <exon start="40356" stop="40597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566797" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCAACTCCTCTATTTTCATTCATTTTCAGTTTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAG : GAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGT : GCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAG : TTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAG : ATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAG : GAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAG : GTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAG : GCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAG : ATAATCAAACCTGAGTTGCTTAAGAAGGGTTTCGAGCTTGTCAACAG : GGAAGGACTTGAAGTAACAGATGATGTATCAATAGTGGAGCACCTTAAACATCCAGTATATATTACTGAAGGCTCTTACACTAACATAAAG : GTTACAACGCCTGATGATTTGCTTCTTGCAGAAAGAATATTGAATATTGAAGAATCTTAGGGTTTTCAATTTTCTTAGGCTTTTTTTTTGTTCAAACATTATAATTCCCTGGAAATTTGTATTCTGAATAGGTGAAGTTAACCTTCCACAAGAGTTCCTCAGAAAATTGAGTCTTGTAAACTTATTGGCAAAAGAAAGCAACATTCTTTTCAAGGTTTTCAGCTCATGACTGAGACTTTGAC</gDNA_template>
            <first_frame> D  Q  L  L  Y  F  H  S  F  S  V  F  S  L  *  T  E  G  V  K  Y  N  N  M  S  T  L  Q  L  G  I  I  L  S  S  S  S  P  M  F  L  A  S  N  S  H  I  P  K  N  V  L  P  S  I  S  L  F  P  T  Y  F  V  K  N  P  C  R  R  T  Y  S  H  A  D  P  R  R  G  L  F  K  I  S  C  S  S  T  S  E  N  L  N  K  :  E  S  D  V  V  V  V  E  E  K  S  V  S  V  I  L  L  A  G  G  K  G  K  R  M  G  :  A  S  M  P  K  Q  Y  L  P  L  L  G  Q  P  I  A  L  Y  S :   F  Y  T  F  S  K  M  P  Q  V  K  E  I  I  V  V  C  D  P  S  Y  Q  D  I  F  E   : D  A  K  E  Y  I  Q  V  D  L  K  F  A  L  P  G  K  E  R  Q  D  S  V  Y  S  G  L  Q  :  E  V  D  S  N  S  K  L  A  C  I  H  D  S  A  R  P  L  V  Q  I  E  D  V  E  K  :  V  L  K  D  G  W  L  V  G  A  A  V  L  G  V  P  A  K  A  T  I  K  E  :  A  N  S  E  S  F  V  V  K  T  L  D  R  K  T  L  W  E  M  Q  T  P  Q  :  I  I  K  P  E  L  L  K  K  G  F  E  L  V  N  R :   E  G  L  E  V  T  D  D  V  S  I  V  E  H  L  K  H  P  V  Y  I  T  E  G  S  Y  T  N  I  K  :  V  T  T  P  D  D  L  L  L  A  E  R  I  L  N  I  E  E  S  *  G  F  Q  F  S  *  A  F  F  L  F  K  H  Y  N  S  L  E  I  C  I  L  N  R  *  S  *  P  S  T  R  V  P  Q  K  I  E  S  C  K  L  I  G  K  R  K  Q  H  S  F  Q  G  F  Q  L  M  T  E  T  L   </first_frame>
            <second_frame>  I  N  S  S  I  F  I  H  F  Q  F  S  L  F  E  L  R  E  *  S  T  T  T  C  L  L  F  N  W  V  S  S  F  H  L  P  L  Q  C  S  W  Q  V  I  L  I  Y  P  R  M  Y  C  L  L  S  H  F  S  P  P  T  L  *  R  I  L  A  E  E  P  T  V  M  L  T  Q  E  G  V  F  S  R  F  L  V  L  P  P  Q  K  I  L  T  R :   S  Q  M  *  W  W  W  R  R  K  V  F  L  *  F  F  L  L  E  E  R  G  K  E  W  V :   Q  A  C  Q  S  S  I  F  H  F  *  A  S  Q  L  H  C  T   : V  S  T  L  S  P  R  C  L  R  *  R  K  L  L  L  Y  V  I  L  L  I  K  T  F  L  K  :  M  P  K  S  I  S  K  S  T  *  N  L  H  C  L  G  R  K  D  K  I  L  Y  T  A  D  F  R :   K  L  I  Q  T  P  N  S  H  A  S  M  T  L  Q  D  L  L  Y  K  L  K  M  *  K  R :   S  *  R  M  V  G  W  L  E  Q  Q  F  L  V  F  L  P  K  L  Q  S  K  R :   Q  T  V  N  L  S  L  *  R  L  L  T  G  K  H  F  G  K  C  R  H  L  R :   *  S  N  L  S  C  L  R  R  V  S  S  L  S  T   : G  K  D  L  K  *  Q  M  M  Y  Q  *  W  S  T  L  N  I  Q  Y  I  L  L  K  A  L  T  L  T  *  R :   L  Q  R  L  M  I  C  F  L  Q  K  E  Y  *  I  L  K  N  L  R  V  F  N  F  L  R  L  F  F  C  S  N  I  I  I  P  W  K  F  V  F  *  I  G  E  V  N  L  P  Q  E  F  L  R  K  L  S  L  V  N  L  L  A  K  E  S  N  I  L  F  K  V  F  S  S  *  L  R  L  *  </second_frame>
            <third_frame>   S  T  P  L  F  S  F  I  F  S  F  L  S  L  N  *  G  S  K  V  Q  Q  H  V  Y  S  S  I  G  Y  H  P  F  I  F  L  S  N  V  L  G  K  *  F  S  Y  T  Q  E  C  I  A  F  Y  L  T  F  P  H  L  L  C  K  E  S  L  Q  K  N  L  Q  S  C  *  P  K  K  G  S  F  Q  D  F  L  F  F  H  L  R  K  S  *  Q   : G  V  R  C  S  G  G  G  G  E  K  C  F  C  D  S  S  C  W  R  K  G  E  K  N  G   : C  K  H  A  K  A  V  S  S  T  S  R  P  A  N  C  I  V  Q  :  F  L  H  F  L  Q  D  A  S  G  E  G  N  Y  C  C  M  *  S  F  L  S  R  H  F  *  R :   C  Q  R  V  Y  P  S  R  L  K  I  C  I  A  W  E  G  K  T  R  F  C  I  Q  R  T  S   : G  S  *  F  K  L  Q  T  R  M  H  P  *  L  C  K  T  S  C  T  N  *  R  C  R  K   : G  P  E  G  W  L  A  G  W  S  S  S  S  W  C  S  C  Q  S  Y  N  Q  R   : G  K  Q  *  I  F  R  C  E  D  S  *  Q  E  N  T  L  G  N  A  D  T  S   : D  N  Q  T  *  V  A  *  E  G  F  R  A  C  Q  Q  :  G  R  T  *  S  N  R  *  C  I  N  S  G  A  P  *  T  S  S  I  Y  Y  *  R  L  L  H  *  H  K   : G  Y  N  A  *  *  F  A  S  C  R  K  N  I  E  Y  *  R  I  L  G  F  S  I  F  L  G  F  F  F  V  Q  T  L  *  F  P  G  N  L  Y  S  E  *  V  K  L  T  F  H  K  S  S  S  E  N  *  V  L  *  T  Y  W  Q  K  K  A  T  F  F  S  R  F  S  A  H  D  *  D  F  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35480" stop="35716"/>
                    <exon start="35799" stop="35876"/>
                    <exon start="36111" stop="36166"/>
                    <exon start="36731" stop="36810"/>
                    <exon start="36973" stop="37055"/>
                    <exon start="37810" stop="37887"/>
                    <exon start="38129" stop="38197"/>
                    <exon start="39114" stop="39182"/>
                    <exon start="39254" stop="39300"/>
                    <exon start="40156" stop="40246"/>
                    <exon start="40356" stop="40415"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEGVKYNNMSTLQLGIILSSSSPMFLASNSHIPKNVLPSISLFPTYFVKNPCRRTYSHADPRRGLFKISCSSTSENLNKESDVVVVEEKSVSVILLAGGKGKRMGASMPKQYLPLLGQPIALYSFYTFSKMPQVKEIIVVCDPSYQDIFEDAKEYIQVDLKFALPGKERQDSVYSGLQEVDSNSKLACIHDSARPLVQIEDVEKVLKDGWLVGAAVLGVPAKATIKEANSESFVVKTLDRKTLWEMQTPQIIKPELLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLLAERILNIEES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="44945" PGL_stop="41943"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44945" e_stop="44836"/>
            <exon e_start="44748" e_stop="44532"/>
            <exon e_start="43978" e_stop="43460"/>
            <exon e_start="42651" e_stop="41943"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.849" acc_prob="0.987" e_score="0.991"/>
          <exon-intron don_prob="0.990" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.923" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="44945" e_stop="44836" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.849" acc_prob="0.987">
            <gDNA_intron_boundary i_start="44835" i_stop="44749" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44748" e_stop="44532" e_length="217"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.802">
            <gDNA_intron_boundary i_start="44531" i_stop="43979" i_length="553"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43978" e_stop="43460" e_length="519"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.923">
            <gDNA_intron_boundary i_start="43459" i_stop="42652" i_length="808"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="42651" e_stop="41943" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44945" stop="44836"/>
              <exon start="44748" stop="44532"/>
              <exon start="43978" stop="43460"/>
              <exon start="42651" stop="41943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565170" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGATTTGATTGCTCTAAATGCAGATGGATCACTTCGAGATGCAGAAACTATGTTAGACCAGCTCAGTTTGTTGGGGAAACGAATCACTACCTCTTTGGTTAATGATCTG : ATTGGTGTGGTTTCAGATGAGAAGTTACTGGAACTTTTAGAGCTAGCCATGTCATCAGACACTGCAGAAACAGTGAAAAGAGCCCGGGAATTGTTGGATTCAGGTGTTGATCCAATAGTTTTGATGTCTCAATTGGCTACTCTCATCATGGATATAATTGCTGGAACTCATCCAATACTTGATGCAAAGCAAACTGATATCTCTGGCGGTAAAAGTT : TGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCCACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGATCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCATGTAAGTCAGGTTCTCCCTCATCTTTTGCGAAAGCCAACCGTCGAAACTCAGCAAGTAGAGAATTGACACTTTCATCAATGAATGGGGAGCCATTGGGTGGTCCACATAATGACACTAAGGACAGCAAGACAGCATCTAGGTGCCCCAACACAAACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAG : GTGGTTTTGTTGCTCATATTGCCTTTCGTGATAGCAAGGTTAAATTGAGAGCAGAGAGGTTTCTTAGCAGTATCACGAATTCATTTGAAACTATTTTAAGGAGCAATGTAGAGGTTAGACTTGTTCTGCTACCAGATGCGGAGACATCTGATGACAGTGGAAAGCCAATTACATTGATCAATTCTGGAGGTTTGAAACAGATGGGTTCGCAAAATAATATGGTGAAGAGGGAAATAGCAGTTAGCTCAAATCAGGATCCGCTGCAGGTATCAAGAAGTAGCTTTAATGATCCTGAAAGCAAGATGGTTGAAACTTTTGAGTCAGCAAGTGGAAATGCTGGAACGAGTAGTTCTAAAGAGAGAATCTCAGAAATTCCAGTGCAGAGAATAGAATCCATCATACGTGAGCAGAGGTTAGAAACAGCATGGTTACAAGCAATGGAGAAAGGCACTCCTGGATCAATGAGTCGCCTGAAACCTGAGAGGAACCAAGTCCTGCCACAAGATGGTCTTTATCATAACAACCAACTAGAACCAATTAATTCAAGGGAACTGTTCTCCCAGCATTGGCATGATGATCTAAATGAGGAAATTAGAAGTCTGAAGATGATTGACGGAAAGGCTGTTCAGAAGGATCAAACCAGTAAAAAGGGCGACAGTTATCCCATTTCACCAAGTTTGTTGCATAATGGCATATATGGCAGTAATTT</gDNA_template>
            <first_frame> *  I  *  L  L  *  M  Q  M  D  H  F  E  M  Q  K  L  C  *  T  S  S  V  C  W  G  N  E  S  L  P  L  W  L  M  I  * :   L  V  W  F  Q  M  R  S  Y  W  N  F  *  S  *  P  C  H  Q  T  L  Q  K  Q  *  K  E  P  G  N  C  W  I  Q  V  L  I  Q  *  F  *  C  L  N  W  L  L  S  S  W  I  *  L  L  E  L  I  Q  Y  L  M  Q  S  K  L  I  S  L  A  V  K  V  :  *  T  R  Q  N  W  I  D  *  S  M  H  *  S  F  F  L  R  Q  R  N  N  *  G  F  Q  V  N  V  R  L  G  L  Q  Q  P  C  C  S  W  V  L  P  L  H  *  I  E  L  I  Q  E  A  V  T  G  *  V  L  R  Q  Q  R  K  I  L  L  V  H  L  E  K  L  Y  P  *  G  R  E  L  I  F  T  M  H  H  V  S  Q  V  L  P  H  L  L  R  K  P  T  V  E  T  Q  Q  V  E  N  *  H  F  H  Q  *  M  G  S  H  W  V  V  H  I  M  T  L  R  T  A  R  Q  H  L  G  A  P  T  Q  T  C  W  M  I  S  G  S  D  A  L  I  N  A  T  P  T  L  *  S  N  C  F  I  L  V  E  H  F  C  R  S  L  K  L  K  :  V  V  L  L  L  I  L  P  F  V  I  A  R  L  N  *  E  Q  R  G  F  L  A  V  S  R  I  H  L  K  L  F  *  G  A  M  *  R  L  D  L  F  C  Y  Q  M  R  R  H  L  M  T  V  E  S  Q  L  H  *  S  I  L  E  V  *  N  R  W  V  R  K  I  I  W  *  R  G  K  *  Q  L  A  Q  I  R  I  R  C  R  Y  Q  E  V  A  L  M  I  L  K  A  R  W  L  K  L  L  S  Q  Q  V  E  M  L  E  R  V  V  L  K  R  E  S  Q  K  F  Q  C  R  E  *  N  P  S  Y  V  S  R  G  *  K  Q  H  G  Y  K  Q  W  R  K  A  L  L  D  Q  *  V  A  *  N  L  R  G  T  K  S  C  H  K  M  V  F  I  I  T  T  N  *  N  Q  L  I  Q  G  N  C  S  P  S  I  G  M  M  I  *  M  R  K  L  E  V  *  R  *  L  T  E  R  L  F  R  R  I  K  P  V  K  R  A  T  V  I  P  F  H  Q  V  C  C  I  M  A  Y  M  A  V  I  </first_frame>
            <second_frame>  R  F  D  C  S  K  C  R  W  I  T  S  R  C  R  N  Y  V  R  P  A  Q  F  V  G  E  T  N  H  Y  L  F  G  *  *  S   : D  W  C  G  F  R  *  E  V  T  G  T  F  R  A  S  H  V  I  R  H  C  R  N  S  E  K  S  P  G  I  V  G  F  R  C  *  S  N  S  F  D  V  S  I  G  Y  S  H  H  G  Y  N  C  W  N  S  S  N  T  *  C  K  A  N  *  Y  L  W  R  *  K  F :   E  R  D  R  T  G  *  I  E  A  C  T  K  A  S  F  *  G  R  E  T  T  K  G  F  K  *  T  F  D  L  V  Y  S  N  P  A  A  V  G  F  C  H  F  T  R  S  N  S  F  R  K  Q  S  Q  A  E  F  *  D  N  R  G  R  S  F  *  Y  I  *  R  S  Y  I  P  E  A  E  N  *  Y  S  P  C  T  M  *  V  R  F  S  L  I  F  C  E  S  Q  P  S  K  L  S  K  *  R  I  D  T  F  I  N  E  W  G  A  I  G  W  S  T  *  *  H  *  G  Q  Q  D  S  I  *  V  P  Q  H  K  R  V  G  *  Y  L  D  Q  M  H  *  *  M  P  L  Q  H  F  E  A  I  A  S  Y  L  W  N  T  S  V  D  L  *  S  *  R :   W  F  C  C  S  Y  C  L  S  *  *  Q  G  *  I  E  S  R  E  V  S  *  Q  Y  H  E  F  I  *  N  Y  F  K  E  Q  C  R  G  *  T  C  S  A  T  R  C  G  D  I  *  *  Q  W  K  A  N  Y  I  D  Q  F  W  R  F  E  T  D  G  F  A  K  *  Y  G  E  E  G  N  S  S  *  L  K  S  G  S  A  A  G  I  K  K  *  L  *  *  S  *  K  Q  D  G  *  N  F  *  V  S  K  W  K  C  W  N  E  *  F  *  R  E  N  L  R  N  S  S  A  E  N  R  I  H  H  T  *  A  E  V  R  N  S  M  V  T  S  N  G  E  R  H  S  W  I  N  E  S  P  E  T  *  E  E  P  S  P  A  T  R  W  S  L  S  *  Q  P  T  R  T  N  *  F  K  G  T  V  L  P  A  L  A  *  *  S  K  *  G  N  *  K  S  E  D  D  *  R  K  G  C  S  E  G  S  N  Q  *  K  G  R  Q  L  S  H  F  T  K  F  V  A  *  W  H  I  W  Q  *  F </second_frame>
            <third_frame>   D  L  I  A  L  N  A  D  G  S  L  R  D  A  E  T  M  L  D  Q  L  S  L  L  G  K  R  I  T  T  S  L  V  N  D  L  :  I  G  V  V  S  D  E  K  L  L  E  L  L  E  L  A  M  S  S  D  T  A  E  T  V  K  R  A  R  E  L  L  D  S  G  V  D  P  I  V  L  M  S  Q  L  A  T  L  I  M  D  I  I  A  G  T  H  P  I  L  D  A  K  Q  T  D  I  S  G  G  K  S   : L  N  E  T  E  L  D  R  L  K  H  A  L  K  L  L  S  E  A  E  K  Q  L  R  V  S  S  E  R  S  T  W  F  T  A  T  L  L  Q  L  G  S  A  T  S  L  D  R  T  H  S  G  S  S  H  R  L  S  S  K  T  T  E  E  D  P  S  S  T  S  R  E  A  I  S  L  R  Q  R  T  D  I  H  H  A  P  C  K  S  G  S  P  S  S  F  A  K  A  N  R  R  N  S  A  S  R  E  L  T  L  S  S  M  N  G  E  P  L  G  G  P  H  N  D  T  K  D  S  K  T  A  S  R  C  P  N  T  N  V  L  D  D  I  W  I  R  C  I  D  K  C  H  S  N  T  L  K  Q  L  L  H  T  C  G  T  L  L  S  I  S  E  V  E   : G  G  F  V  A  H  I  A  F  R  D  S  K  V  K  L  R  A  E  R  F  L  S  S  I  T  N  S  F  E  T  I  L  R  S  N  V  E  V  R  L  V  L  L  P  D  A  E  T  S  D  D  S  G  K  P  I  T  L  I  N  S  G  G  L  K  Q  M  G  S  Q  N  N  M  V  K  R  E  I  A  V  S  S  N  Q  D  P  L  Q  V  S  R  S  S  F  N  D  P  E  S  K  M  V  E  T  F  E  S  A  S  G  N  A  G  T  S  S  S  K  E  R  I  S  E  I  P  V  Q  R  I  E  S  I  I  R  E  Q  R  L  E  T  A  W  L  Q  A  M  E  K  G  T  P  G  S  M  S  R  L  K  P  E  R  N  Q  V  L  P  Q  D  G  L  Y  H  N  N  Q  L  E  P  I  N  S  R  E  L  F  S  Q  H  W  H  D  D  L  N  E  E  I  R  S  L  K  M  I  D  G  K  A  V  Q  K  D  Q  T  S  K  K  G  D  S  Y  P  I  S  P  S  L  L  H  N  G  I  Y  G  S  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44943" stop="44836"/>
                    <exon start="44748" stop="44532"/>
                    <exon start="43978" stop="43460"/>
                    <exon start="42651" stop="41945"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1551</number_coding_nucleotides>
                  <number_encoded_amino_acids>517</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIALNADGSLRDAETMLDQLSLLGKRITTSLVNDLIGVVSDEKLLELLELAMSSDTAETVKRARELLDSGVDPIVLMSQLATLIMDIIAGTHPILDAKQTDISGGKSLNETELDRLKHALKLLSEAEKQLRVSSERSTWFTATLLQLGSATSLDRTHSGSSHRLSSKTTEEDPSSTSREAISLRQRTDIHHAPCKSGSPSSFAKANRRNSASRELTLSSMNGEPLGGPHNDTKDSKTASRCPNTNVLDDIWIRCIDKCHSNTLKQLLHTCGTLLSISEVEGGFVAHIAFRDSKVKLRAERFLSSITNSFETILRSNVEVRLVLLPDAETSDDSGKPITLINSGGLKQMGSQNNMVKREIAVSSNQDPLQVSRSSFNDPESKMVETFESASGNAGTSSSKERISEIPVQRIESIIREQRLETAWLQAMEKGTPGSMSRLKPERNQVLPQDGLYHNNQLEPINSRELFSQHWHDDLNEEIRSLKMIDGKAVQKDQTSKKGDSYPISPSLLHNGIYGSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="53859" PGL_stop="52405"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53859" e_stop="53620"/>
            <exon e_start="53003" e_stop="52863"/>
            <exon e_start="52425" e_stop="52405"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="53859" e_stop="53620" e_length="240"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53619" i_stop="53004" i_length="616"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="53003" e_stop="52863" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="52862" i_stop="52426" i_length="437"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52425" e_stop="52405" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53859" stop="53620"/>
              <exon start="53003" stop="52863"/>
              <exon start="52425" stop="52405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603751" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGGTACATTTGTCAAATGGAGGGGACCTCCAGTGGAATTATTATCTAAGCTCAAGCAAGAACGCAGTTTTCTGGAGAACAATGAATCTTCACTTGCTTTGGATGAATTAGAGATTATGTTTAAAGCTCTGGAGAAGTCCAAGTGTATTGACAGAGTGGTTTTTGACTTGAGCCTTGCAAGAGGCCTTGATTACTACACAGGAGTCATATTTGAAGCAGTCTTCAAAGGAGCTGCTCAG : GTTGGTTCGATTGCTGCTGGTGGACGTTATGACAACCTGATAGGGATGTTTGGGACACGGCAGGTTCCTTCTGTTGGGATCAGTCTGGGAATAGAGAGAGTATTTGCAATCATGGAACAGCTTCAGAAAGACAAAAATCAG : GAAATTCGAGCCACTGAAACT</gDNA_template>
            <first_frame> I  G  T  F  V  K  W  R  G  P  P  V  E  L  L  S  K  L  K  Q  E  R  S  F  L  E  N  N  E  S  S  L  A  L  D  E  L  E  I  M  F  K  A  L  E  K  S  K  C  I  D  R  V  V  F  D  L  S  L  A  R  G  L  D  Y  Y  T  G  V  I  F  E  A  V  F  K  G  A  A  Q  :  V  G  S  I  A  A  G  G  R  Y  D  N  L  I  G  M  F  G  T  R  Q  V  P  S  V  G  I  S  L  G  I  E  R  V  F  A  I  M  E  Q  L  Q  K  D  K  N  Q  :  E  I  R  A  T  E  T </first_frame>
            <second_frame>  L  V  H  L  S  N  G  G  D  L  Q  W  N  Y  Y  L  S  S  S  K  N  A  V  F  W  R  T  M  N  L  H  L  L  W  M  N  *  R  L  C  L  K  L  W  R  S  P  S  V  L  T  E  W  F  L  T  *  A  L  Q  E  A  L  I  T  T  Q  E  S  Y  L  K  Q  S  S  K  E  L  L  R :   L  V  R  L  L  L  V  D  V  M  T  T  *  *  G  C  L  G  H  G  R  F  L  L  L  G  S  V  W  E  *  R  E  Y  L  Q  S  W  N  S  F  R  K  T  K  I  R :   K  F  E  P  L  K   </second_frame>
            <third_frame>   W  Y  I  C  Q  M  E  G  T  S  S  G  I  I  I  *  A  Q  A  R  T  Q  F  S  G  E  Q  *  I  F  T  C  F  G  *  I  R  D  Y  V  *  S  S  G  E  V  Q  V  Y  *  Q  S  G  F  *  L  E  P  C  K  R  P  *  L  L  H  R  S  H  I  *  S  S  L  Q  R  S  C  S   : G  W  F  D  C  C  W  W  T  L  *  Q  P  D  R  D  V  W  D  T  A  G  S  F  C  W  D  Q  S  G  N  R  E  S  I  C  N  H  G  T  A  S  E  R  Q  K  S   : G  N  S  S  H  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53859" stop="53620"/>
                    <exon start="53003" stop="52863"/>
                    <exon start="52425" stop="52405"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGTFVKWRGPPVELLSKLKQERSFLENNESSLALDELEIMFKALEKSKCIDRVVFDLSLARGLDYYTGVIFEAVFKGAAQVGSIAAGGRYDNLIGMFGTRQVPSVGISLGIERVFAIMEQLQKDKNQEIRATET</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="58861" PGL_stop="58113"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58861" e_stop="58113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="58861" e_stop="58113" e_length="749"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58861" stop="58113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGAAACAAGAAGATTCCAATCGCACTCAAGCCCAAGTGTAACGCAAAACAAAACAAACCCCAAAACTCTTGGGTTGAAACCCATTTGCAAAACCTAATTCCCAAAATTCCGTTTCTGCAGCCCATTTCCCCCCCAAAAAACCCTCAATCCGTCACCTTCTAAACCCCCATTAATCCCTTCGCCGGCGATTTTGCCGGAAAACCCAACATCATCTTTCTGATTCGGTGACCCATGGCGGAAGAGAGACGCATGGTTACAGTGGGCGGAAAAGGCTCATCACTGTCATCTTCCTCTGTATTTGATATTGCCAATGGGCTCAGTCGTCTGAGCATAGACTCTTCAGCACTCTCCAAAGTATCGTCTTCCTCCAATGCTAAAACCAGCAAGACTAATGCGCCTACGGTGTCTGCATCATTTTCAATCCTCAGTAATTTAACATCCGATGAGGCTAGAGCTTCTCTCGTGGTCCTGCTCAACAAGCTTTTGCTTTCTTCTTCCACTTCTGCAGCTGTTAATCAGCTCTCTGATATCATCCTTAAGGATGTATTGTCGTCCTCTAATGTGCAAATTTCGTTTGATAACACTATTGATGGCGTTTCTCCGGGTGATTTTTCTGTGGCAGCAATAGCTGGAATCTCCGCTATCTTGGATCATCGAAGTTCAGCTTTGTCTGTTATTACTGATGCTATTGCTGCCTTGTCCTGCGAGGCCTTGGGGGCTGACATTTCAGCTTTCAATTTGAATGAT</gDNA_template>
            <first_frame> I  E  T  R  R  F  Q  S  H  S  S  P  S  V  T  Q  N  K  T  N  P  K  T  L  G  L  K  P  I  C  K  T  *  F  P  K  F  R  F  C  S  P  F  P  P  Q  K  T  L  N  P  S  P  S  K  P  P  L  I  P  S  P  A  I  L  P  E  N  P  T  S  S  F  *  F  G  D  P  W  R  K  R  D  A  W  L  Q  W  A  E  K  A  H  H  C  H  L  P  L  Y  L  I  L  P  M  G  S  V  V  *  A  *  T  L  Q  H  S  P  K  Y  R  L  P  P  M  L  K  P  A  R  L  M  R  L  R  C  L  H  H  F  Q  S  S  V  I  *  H  P  M  R  L  E  L  L  S  W  S  C  S  T  S  F  C  F  L  L  P  L  L  Q  L  L  I  S  S  L  I  S  S  L  R  M  Y  C  R  P  L  M  C  K  F  R  L  I  T  L  L  M  A  F  L  R  V  I  F  L  W  Q  Q  *  L  E  S  P  L  S  W  I  I  E  V  Q  L  C  L  L  L  L  M  L  L  L  P  C  P  A  R  P  W  G  L  T  F  Q  L  S  I  *  M   </first_frame>
            <second_frame>  *  K  Q  E  D  S  N  R  T  Q  A  Q  V  *  R  K  T  K  Q  T  P  K  L  L  G  *  N  P  F  A  K  P  N  S  Q  N  S  V  S  A  A  H  F  P  P  K  K  P  S  I  R  H  L  L  N  P  H  *  S  L  R  R  R  F  C  R  K  T  Q  H  H  L  S  D  S  V  T  H  G  G  R  E  T  H  G  Y  S  G  R  K  R  L  I  T  V  I  F  L  C  I  *  Y  C  Q  W  A  Q  S  S  E  H  R  L  F  S  T  L  Q  S  I  V  F  L  Q  C  *  N  Q  Q  D  *  C  A  Y  G  V  C  I  I  F  N  P  Q  *  F  N  I  R  *  G  *  S  F  S  R  G  P  A  Q  Q  A  F  A  F  F  F  H  F  C  S  C  *  S  A  L  *  Y  H  P  *  G  C  I  V  V  L  *  C  A  N  F  V  *  *  H  Y  *  W  R  F  S  G  *  F  F  C  G  S  N  S  W  N  L  R  Y  L  G  S  S  K  F  S  F  V  C  Y  Y  *  C  Y  C  C  L  V  L  R  G  L  G  G  *  H  F  S  F  Q  F  E  *  </second_frame>
            <third_frame>   R  N  K  K  I  P  I  A  L  K  P  K  C  N  A  K  Q  N  K  P  Q  N  S  W  V  E  T  H  L  Q  N  L  I  P  K  I  P  F  L  Q  P  I  S  P  P  K  N  P  Q  S  V  T  F  *  T  P  I  N  P  F  A  G  D  F  A  G  K  P  N  I  I  F  L  I  R  *  P  M  A  E  E  R  R  M  V  T  V  G  G  K  G  S  S  L  S  S  S  S  V  F  D  I  A  N  G  L  S  R  L  S  I  D  S  S  A  L  S  K  V  S  S  S  S  N  A  K  T  S  K  T  N  A  P  T  V  S  A  S  F  S  I  L  S  N  L  T  S  D  E  A  R  A  S  L  V  V  L  L  N  K  L  L  L  S  S  S  T  S  A  A  V  N  Q  L  S  D  I  I  L  K  D  V  L  S  S  S  N  V  Q  I  S  F  D  N  T  I  D  G  V  S  P  G  D  F  S  V  A  A  I  A  G  I  S  A  I  L  D  H  R  S  S  A  L  S  V  I  T  D  A  I  A  A  L  S  C  E  A  L  G  A  D  I  S  A  F  N  L  N  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58631" stop="58113"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMAEERRMVTVGGKGSSLSSSSVFDIANGLSRLSIDSSALSKVSSSSNAKTSKTNAPTVSASFSILSNLTSDEARASLVVLLNKLLLSSSTSAAVNQLSDIILKDVLSSSNVQISFDNTIDGVSPGDFSVAAIAGISAILDHRSSALSVITDAIAALSCEALGADISAFNLND</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="69474" PGL_stop="62193"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68192" e_stop="67709"/>
            <exon e_start="67569" e_stop="67537"/>
            <exon e_start="65714" e_stop="65486"/>
            <exon e_start="62874" e_stop="62754"/>
            <exon e_start="62661" e_stop="62193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.965"/>
          <exon-intron don_prob="0.490" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.663" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="68192" e_stop="67709" e_length="484"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67708" i_stop="67570" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67569" e_stop="67537" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.490" acc_prob="0.960">
            <gDNA_intron_boundary i_start="67536" i_stop="65715" i_length="1822"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65714" e_stop="65486" e_length="229"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.994">
            <gDNA_intron_boundary i_start="65485" i_stop="62875" i_length="2611"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62874" e_stop="62754" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.663">
            <gDNA_intron_boundary i_start="62753" i_stop="62662" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="62661" e_stop="62193" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68192" stop="67709"/>
              <exon start="67569" stop="67537"/>
              <exon start="65714" stop="65486"/>
              <exon start="62874" stop="62822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68067" stop="67709"/>
              <exon start="67569" stop="67537"/>
              <exon start="65714" stop="65486"/>
              <exon start="62874" stop="62754"/>
              <exon start="62661" stop="62193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATAATTTTTGAAAGAACCAATAGATCCAAGTACTCGTACACTAGTGCTACATGTATCTATTTACCAAAAAAGAAACTCAAATAAATGCTGCTACTAAAACCCTTTCCCCACCACCCCACTTTCCTCTTTCTTCATGCTCTTCTCTCTCTCTCTCTATATATCCGTTTCTTACAATTTCTCTACTTGCTTCTCACAATTTCTCATGAAAATTTGAGCTTTTCTCTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAGAGGAAACCCTAGTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAGACTCGATTTTTTTCTTGTGGGGTTGTTAAAAATTGAGTGAAGAGAAGGATAATATGGAAAATACGGTACCTAGGACTGTAGAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAG : ATGTCGAGAAGTTCTATCAGTCGTGTGATCCTG : AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAG : GAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAG : CCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAGGATGAAAGTGGGGAGGAGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTCATGAACATTTGCTTTCTGTTATCTTGCTTTCGGATTGTGTTTTAGATGAAATTTGTGCCTGTT</gDNA_template>
            <first_frame> H  N  F  *  K  N  Q  *  I  Q  V  L  V  H  *  C  Y  M  Y  L  F  T  K  K  E  T  Q  I  N  A  A  T  K  T  L  S  P  P  P  H  F  P  L  S  S  C  S  S  L  S  L  S  I  Y  P  F  L  T  I  S  L  L  A  S  H  N  F  S  *  K  F  E  L  F  S  L  *  I  F  I  F  H  S  T  *  Q  A  I  F  K  V  L  G  N  M  K  R  K  P  *  F  F  G  E  K  T  L  I  F  L  F  F  F  K  D  S  I  F  F  L  W  G  C  *  K  L  S  E  E  K  D  N  M  E  N  T  V  P  R  T  V  E  E  V  F  N  D  F  K  G  R  R  A  G  L  I  K  A  L  T  T   : D  V  E  K  F  Y  Q  S  C  D  P   : E  K  E  N  L  C  L  Y  G  L  P  N  E  T  W  E  V  N  L  P  V  E  E  V  P  P  E  L  P  E  P  A  L  G  I  N  F  A  R  D  G  M  Q  E  K  D  W  L  S  L  V  A  V  H  S  D  S  W  L  L  S  V  A  F  Y  F  G  A  R  F  G  F  G  K  S  E  R :   K  R  L  F  Q  M  T  N  D  L  P  T  V  F  E  V  V  T  G  A  A  K  Q  A  R  D  A  A  H  N  N  S  S  K  S  K  S  S  G  K  :  P  R  Q  P  E  P  Q  P  K  E  V  K  V  S  P  P  T  M  E  D  E  S  G  E  E  E  E  E  E  E  E  E  Q  G  A  T  L  C  G  A  C  G  D  N  Y  A  T  D  E  F  W  I  C  C  D  I  C  E  R  W  F  H  G  K  C  V  K  I  T  P  A  K  A  E  H  I  K  Q  Y  K  C  P  S  C  S  S  K  R  A  R  V  *  N  L  W  D  F  *  I  N  I  N  *  V  E  M  L  E  G  L  G  L  L  A  Q  L  S  N  V  S  Y  V  K  V  K  C  L  L  M  E  L  G  C  P  F  H  E  H  L  L  S  V  I  L  L  S  D  C  V  L  D  E  I  C  A  C  </first_frame>
            <second_frame>  I  I  F  E  R  T  N  R  S  K  Y  S  Y  T  S  A  T  C  I  Y  L  P  K  K  K  L  K  *  M  L  L  L  K  P  F  P  H  H  P  T  F  L  F  L  H  A  L  L  S  L  S  L  Y  I  R  F  L  Q  F  L  Y  L  L  L  T  I  S  H  E  N  L  S  F  S  L  Y  E  S  S  F  F  T  A  H  S  K  L  F  L  K  F  W  A  T  *  R  G  N  P  S  S  L  G  K  K  P  *  F  S  C  F  F  S  K  T  R  F  F  S  C  G  V  V  K  N  *  V  K  R  R  I  I  W  K  I  R  Y  L  G  L  *  K  K  Y  S  T  I  S  K  V  V  E  L  V  *  L  K  H  *  L  Q  :  M  S  R  S  S  I  S  R  V  I  L  :  K  R  R  T  C  V  S  M  G  F  L  M  K  H  G  K  *  T  S  L  L  R  R  C  L  Q  N  F  R  S  Q  H  *  A  *  T  L  H  V  M  E  C  K  R  K  T  G  Y  H  L  L  L  F  I  V  I  H  G  C  F  L  L  H  S  T  L  A  H  G  L  G  L  A  R  V  K   : G  R  G  F  S  K  *  Q  M  I  S  Q  Q  C  L  R  L  L  L  E  L  L  S  R  H  A  M  P  L  T  T  I  A  A  K  A  N  Q  V  E  S :   L  D  S  Q  S  P  S  P  R  K  *  R  C  L  H  L  Q  W  R  M  K  V  G  R  R  R  K  K  K  K  K  N  K  G  Q  L  S  V  E  P  V  V  I  I  M  R  L  M  N  S  G  F  A  V  I  F  V  R  D  G  S  M  A  N  V  *  R  L  P  Q  Q  K  L  S  I  S  S  S  T  S  V  P  A  A  V  A  R  E  L  E  F  K  I  C  G  T  F  R  S  T  S  I  K  W  R  C  W  K  V  *  D  F  *  L  S  Y  Q  M  *  A  M  S  K  L  N  V  C  *  W  N  W  D  V  H  F  M  N  I  C  F  L  L  S  C  F  R  I  V  F  *  M  K  F  V  P  V </second_frame>
            <third_frame>   *  F  L  K  E  P  I  D  P  S  T  R  T  L  V  L  H  V  S  I  Y  Q  K  R  N  S  N  K  C  C  Y  *  N  P  F  P  T  T  P  L  S  S  F  F  M  L  F  S  L  S  L  Y  I  S  V  S  Y  N  F  S  T  C  F  S  Q  F  L  M  K  I  *  A  F  L  F  M  N  L  H  F  S  Q  H  I  A  S  Y  F  *  S  F  G  Q  H  E  E  E  T  L  V  L  W  G  K  N  P  N  F  L  V  F  F  Q  R  L  D  F  F  L  V  G  L  L  K  I  E  *  R  E  G  *  Y  G  K  Y  G  T  *  D  C  R  R  S  I  Q  R  F  Q  R  S  *  S  W  F  N  *  S  T  N  Y  R :   C  R  E  V  L  S  V  V  *  S  * :   K  G  E  L  V  S  L  W  A  S  *  *  N  M  G  S  K  P  P  C  *  G  G  A  S  R  T  S  G  A  S  I  R  H  K  L  C  T  *  W  N  A  R  E  R  L  V  I  T  C  C  C  S  *  *  F  M  A  A  F  C  C  I  L  L  W  R  T  V  W  V  W  Q  E  *  K  :  E  E  A  F  P  N  D  K  *  S  P  N  S  V  *  G  C  Y  W  S  C  *  A  G  T  R  C  R  S  Q  Q  *  Q  Q  K  Q  I  K  W  K   : A  S  T  A  R  A  P  A  Q  G  S  K  G  V  S  T  Y  N  G  G  *  K  W  G  G  G  G  R  R  R  R  R  T  R  G  N  S  L  W  S  L  W  *  *  L  C  D  *  *  I  L  D  L  L  *  Y  L  *  E  M  V  P  W  Q  M  C  E  D  Y  P  S  K  S  *  A  Y  Q  A  V  Q  V  S  Q  L  Q  *  Q  E  S  *  S  L  K  F  V  G  L  L  D  Q  H  Q  L  S  G  D  V  G  R  S  R  T  F  S  S  V  I  K  C  K  L  C  Q  S  *  M  F  A  D  G  I  G  M  S  I  S  *  T  F  A  F  C  Y  L  A  F  G  L  C  F  R  *  N  L  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67820" stop="67709"/>
                    <exon start="67569" stop="67537"/>
                    <exon start="65714" stop="65486"/>
                    <exon start="62874" stop="62754"/>
                    <exon start="62661" stop="62386"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLSEEKDNMENTVPRTVEEVFNDFKGRRAGLIKALTTDVEKFYQSCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFGKSERKRLFQMTNDLPTVFEVVTGAAKQARDAAHNNSSKSKSSGKPRQPEPQPKEVKVSPPTMEDESGEEEEEEEEEQGATLCGACGDNYATDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSSKRARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68107" stop="67907"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLLLKPFPHHPTFLFLHALLSLSLYIRFLQFLYLLLTISHENLSFSLYESSFFTAHSKLFLKFWAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="69474" e_stop="69423"/>
            <exon e_start="67812" e_stop="67709"/>
            <exon e_start="67569" e_stop="67537"/>
            <exon e_start="65714" e_stop="65486"/>
            <exon e_start="62874" e_stop="62754"/>
            <exon e_start="62661" e_stop="62427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.828" acc_prob="0.004" e_score="0.538"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.885"/>
          <exon-intron don_prob="0.490" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.663" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.538">
            <gDNA_exon_boundary e_start="69474" e_stop="69423" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.828" acc_prob="0.004">
            <gDNA_intron_boundary i_start="69422" i_stop="67813" i_length="1610"/>
          </intron>
          <exon e_serial="2" e_score="0.885">
            <gDNA_exon_boundary e_start="67812" e_stop="67709" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67708" i_stop="67570" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67569" e_stop="67537" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.490" acc_prob="0.960">
            <gDNA_intron_boundary i_start="67536" i_stop="65715" i_length="1822"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65714" e_stop="65486" e_length="229"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.994">
            <gDNA_intron_boundary i_start="65485" i_stop="62875" i_length="2611"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62874" e_stop="62754" e_length="121"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.663">
            <gDNA_intron_boundary i_start="62753" i_stop="62662" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62661" e_stop="62427" e_length="235"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69474" stop="69423"/>
              <exon start="67812" stop="67709"/>
              <exon start="67569" stop="67537"/>
              <exon start="65714" stop="65486"/>
              <exon start="62874" stop="62754"/>
              <exon start="62661" stop="62427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590056" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTACAATTCTTCATCTGCTACAACAATTCAACAGCTTCAATCACATTGCC : TGAAGAGAAGGATAATATGGAAAATACGGTACCTAGGACTGTAGAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAG : ATGTCGAGAAGTTCTATCAGTCGTGTGATCCTG : AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAG : GAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAG : CCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAGGATGAAAGTGGGGAGGAGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGT</gDNA_template>
            <first_frame> H  Y  N  S  S  S  A  T  T  I  Q  Q  L  Q  S  H  C   : L  K  R  R  I  I  W  K  I  R  Y  L  G  L  *  K  K  Y  S  T  I  S  K  V  V  E  L  V  *  L  K  H  *  L  Q  :  M  S  R  S  S  I  S  R  V  I  L  :  K  R  R  T  C  V  S  M  G  F  L  M  K  H  G  K  *  T  S  L  L  R  R  C  L  Q  N  F  R  S  Q  H  *  A  *  T  L  H  V  M  E  C  K  R  K  T  G  Y  H  L  L  L  F  I  V  I  H  G  C  F  L  L  H  S  T  L  A  H  G  L  G  L  A  R  V  K   : G  R  G  F  S  K  *  Q  M  I  S  Q  Q  C  L  R  L  L  L  E  L  L  S  R  H  A  M  P  L  T  T  I  A  A  K  A  N  Q  V  E  S :   L  D  S  Q  S  P  S  P  R  K  *  R  C  L  H  L  Q  W  R  M  K  V  G  R  R  R  K  K  K  K  K  N  K  G  Q  L  S  V  E  P  V  V  I  I  M  R  L  M  N  S  G  F  A  V  I  F  V  R  D  G  S  M  A  N  V  *  R  L  P  Q  Q  K  L  S  I  S  S  S </first_frame>
            <second_frame>  T  T  I  L  H  L  L  Q  Q  F  N  S  F  N  H  I  A  :  *  R  E  G  *  Y  G  K  Y  G  T  *  D  C  R  R  S  I  Q  R  F  Q  R  S  *  S  W  F  N  *  S  T  N  Y  R :   C  R  E  V  L  S  V  V  *  S  * :   K  G  E  L  V  S  L  W  A  S  *  *  N  M  G  S  K  P  P  C  *  G  G  A  S  R  T  S  G  A  S  I  R  H  K  L  C  T  *  W  N  A  R  E  R  L  V  I  T  C  C  C  S  *  *  F  M  A  A  F  C  C  I  L  L  W  R  T  V  W  V  W  Q  E  *  K  :  E  E  A  F  P  N  D  K  *  S  P  N  S  V  *  G  C  Y  W  S  C  *  A  G  T  R  C  R  S  Q  Q  *  Q  Q  K  Q  I  K  W  K   : A  S  T  A  R  A  P  A  Q  G  S  K  G  V  S  T  Y  N  G  G  *  K  W  G  G  G  G  R  R  R  R  R  T  R  G  N  S  L  W  S  L  W  *  *  L  C  D  *  *  I  L  D  L  L  *  Y  L  *  E  M  V  P  W  Q  M  C  E  D  Y  P  S  K  S  *  A  Y  Q  A   </second_frame>
            <third_frame>   L  Q  F  F  I  C  Y  N  N  S  T  A  S  I  T  L  P :   E  E  K  D  N  M  E  N  T  V  P  R  T  V  E  E  V  F  N  D  F  K  G  R  R  A  G  L  I  K  A  L  T  T   : D  V  E  K  F  Y  Q  S  C  D  P   : E  K  E  N  L  C  L  Y  G  L  P  N  E  T  W  E  V  N  L  P  V  E  E  V  P  P  E  L  P  E  P  A  L  G  I  N  F  A  R  D  G  M  Q  E  K  D  W  L  S  L  V  A  V  H  S  D  S  W  L  L  S  V  A  F  Y  F  G  A  R  F  G  F  G  K  S  E  R :   K  R  L  F  Q  M  T  N  D  L  P  T  V  F  E  V  V  T  G  A  A  K  Q  A  R  D  A  A  H  N  N  S  S  K  S  K  S  S  G  K  :  P  R  Q  P  E  P  Q  P  K  E  V  K  V  S  P  P  T  M  E  D  E  S  G  E  E  E  E  E  E  E  E  E  Q  G  A  T  L  C  G  A  C  G  D  N  Y  A  T  D  E  F  W  I  C  C  D  I  C  E  R  W  F  H  G  K  C  V  K  I  T  P  A  K  A  E  H  I  K  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69472" stop="69423"/>
                    <exon start="67812" stop="67709"/>
                    <exon start="67569" stop="67537"/>
                    <exon start="65714" stop="65486"/>
                    <exon start="62874" stop="62754"/>
                    <exon start="62661" stop="62428"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQFFICYNNSTASITLPEEKDNMENTVPRTVEEVFNDFKGRRAGLIKALTTDVEKFYQSCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFGKSERKRLFQMTNDLPTVFEVVTGAAKQARDAAHNNSSKSKSSGKPRQPEPQPKEVKVSPPTMEDESGEEEEEEEEEQGATLCGACGDNYATDEFWICCDICERWFHGKCVKITPAKAEHIKQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="69575" PGL_stop="69876"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69575" e_stop="69876"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="69575" e_stop="69876" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69575" stop="69876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTGAAAATGGATCTTCAAACACAAGATGATAACAGGCACAATTTCTTTAAAATCTAAAACGCAATCCGAAAGCAAGATAACAGAAAGCAAATGGACATCCCAATTCCATCAGCAAACATTTAACTTTTGACATTTGATAACTGAGCTAAAACTCCTACACCTTCCAACATCACCACTTAATTGTCCTTGCCGCAATTTTTAGACTTTAGCTCTCTTGCTACTGCAACTAGGACACTTGTACTGTTTGATATGCTCAGCTTTAGCTGGAGTAATCTTCACACATTTTCCATGGAACCATC</gDNA_template>
            <first_frame> K  V  K  M  D  L  Q  T  Q  D  D  N  R  H  N  F  F  K  I  *  N  A  I  R  K  Q  D  N  R  K  Q  M  D  I  P  I  P  S  A  N  I  *  L  L  T  F  D  N  *  A  K  T  P  T  P  S  N  I  T  T  *  L  S  L  P  Q  F  L  D  F  S  S  L  A  T  A  T  R  T  L  V  L  F  D  M  L  S  F  S  W  S  N  L  H  T  F  S  M  E  P   </first_frame>
            <second_frame>  K  *  K  W  I  F  K  H  K  M  I  T  G  T  I  S  L  K  S  K  T  Q  S  E  S  K  I  T  E  S  K  W  T  S  Q  F  H  Q  Q  T  F  N  F  *  H  L  I  T  E  L  K  L  L  H  L  P  T  S  P  L  N  C  P  C  R  N  F  *  T  L  A  L  L  L  L  Q  L  G  H  L  Y  C  L  I  C  S  A  L  A  G  V  I  F  T  H  F  P  W  N  H  </second_frame>
            <third_frame>   S  E  N  G  S  S  N  T  R  *  *  Q  A  Q  F  L  *  N  L  K  R  N  P  K  A  R  *  Q  K  A  N  G  H  P  N  S  I  S  K  H  L  T  F  D  I  *  *  L  S  *  N  S  Y  T  F  Q  H  H  H  L  I  V  L  A  A  I  F  R  L  *  L  S  C  Y  C  N  *  D  T  C  T  V  *  Y  A  Q  L  *  L  E  *  S  S  H  I  F  H  G  T  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0043D23.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="74985" PGL_stop="69608"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74985" e_stop="74605"/>
            <exon e_start="74474" e_stop="74442"/>
            <exon e_start="72537" e_stop="72309"/>
            <exon e_start="70275" e_stop="70155"/>
            <exon e_start="70054" e_stop="69608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="0.979"/>
          <exon-intron don_prob="0.932" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="74985" e_stop="74605" e_length="381"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74474" e_stop="74442" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.932" acc_prob="0.981">
            <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72537" e_stop="72309" e_length="229"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="72308" i_stop="70276" i_length="2033"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70275" e_stop="70155" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70154" i_stop="70055" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70054" e_stop="69608" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74985" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72309"/>
              <exon start="70275" stop="70155"/>
              <exon start="70054" stop="69608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578424" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATCTATTTACCAAAAACCCTTTCCCTCTCTTCCCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG : ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG : AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAG : GAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAG : CCTCGGCAGCCAGAGTCCCAACTCAAGGCAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTT</gDNA_template>
            <first_frame> *  S  I  Y  Q  K  P  F  P  S  L  P  A  V  C  S  L  S  L  S  T  I  S  A  T  L  L  L  T  I  S  K  L  F  P  Y  Q  I  F  I  F  T  A  H  S  K  L  I  F  K  F  W  A  T  *  S  G  K  F  S  S  W  G  E  T  L  F  Y  F  N  P  L  L  V  F  F  L  F  Q  R  L  N  F  F  S  C  G  F  V  R  N  C  V  *  T  R  L  L  W  K  I  R  Y  P  G  L  *  K  K  Y  S  A  I  S  K  V  V  E  L  L  *  L  K  H  L  P  Q  :  M  L  R  S  F  I  S  S  V  I  L  :  K  R  R  T  C  V  S  M  G  F  L  M  K  H  G  K  *  T  S  R  W  K  R  C  L  Q  N  F  L  N  Q  H  W  A  *  I  L  H  V  M  E  C  K  K  K  T  G  Y  H  L  L  L  F  T  V  I  R  G  C  F  L  L  H  F  T  L  A  Q  G  L  G  S  A  R  V  I   : G  R  G  F  S  K  *  *  M  I  S  Q  Q  C  L  K  L  L  L  E  L  L  N  K  H  V  M  L  L  T  T  I  A  T  K  A  N  Q  V  E  S :   L  G  S  Q  S  P  N  S  R  Q  *  R  C  L  H  L  K  W  R  T  T  V  V  R  R  K  K  K  K  K  R  M  N  K  A  Q  L  C  V  E  L  V  V  I  I  M  R  L  M  N  S  G  F  A  V  I  F  A  R  D  G  S  M  E  N  V  *  R  L  L  Q  L  K  L  S  I  S  N  S  T  S  V  L  V  A  V  A  R  E  L  K  S  K  N  C  G  K  D  N  *  V  V  M  L  E  G  V  G  V  L  A  Q  L  S  N  V  K  S  *  M  F  A  D  G  I  G  M  S  I  C  F  L  L  S  C  F  R  I  A  F  *  I  L  K  K  L  C  L   </first_frame>
            <second_frame>  N  L  F  T  K  N  P  F  P  L  F  P  L  F  V  L  F  L  S  L  Q  S  L  P  L  Y  F  L  Q  F  L  S  F  F  L  I  K  S  S  F  S  L  H  I  A  N  *  F  S  N  F  G  Q  H  E  V  E  S  L  V  L  G  G  K  P  Y  F  I  S  T  H  F  L  F  F  F  F  S  K  D  S  I  F  F  L  V  D  L  L  E  I  A  C  R  Q  G  Y  Y  G  K  F  G  T  Q  D  C  R  R  S  I  Q  R  F  Q  K  S  *  S  C  F  D  *  S  T  Y  H  R :   C  *  E  V  L  S  A  V  *  S  * :   K  G  E  L  V  S  L  W  A  S  *  *  N  M  G  S  K  P  P  G  G  R  G  A  S  R  T  S  *  T  S  I  G  H  K  F  C  T  *  W  N  A  R  K  R  L  V  I  T  C  C  C  S  Q  *  F  V  A  A  F  C  C  I  L  L  W  R  K  V  W  V  R  Q  E  *  *  :  E  E  A  F  P  N  D  K  *  S  P  N  S  V  *  S  C  Y  W  S  C  *  T  N  T  *  C  S  S  Q  Q  *  Q  Q  K  Q  I  K  W  K   : A  S  A  A  R  V  P  T  Q  G  S  K  G  V  S  T  *  N  G  E  R  Q  W  *  G  G  R  R  R  R  R  G  *  T  R  R  N  S  V  W  S  L  W  *  *  L  C  D  *  *  I  L  D  L  L  *  Y  L  R  E  M  V  P  W  K  M  C  E  D  Y  S  S  *  S  *  A  Y  Q  T  V  Q  V  S  *  L  Q  *  Q  E  S  *  S  L  K  I  A  A  R  T  I  K  W  *  C  W  K  V  *  E  F  *  L  S  Y  Q  M  S  K  V  K  C  L  L  M  E  L  G  C  P  F  A  F  C  Y  L  A  F  G  L  R  F  R  F  *  R  N  C  A  C  </second_frame>
            <third_frame>   I  Y  L  P  K  T  L  S  L  S  S  R  C  L  F  S  F  S  L  Y  N  L  C  H  F  T  S  Y  N  F  *  A  F  S  L  S  N  L  H  F  H  C  T  *  Q  T  N  F  Q  I  L  G  N  M  K  W  K  V  *  F  L  G  G  N  P  I  L  F  Q  P  T  S  C  F  F  S  F  P  K  T  Q  F  F  F  L  W  I  C  *  K  L  R  V  D  K  V  I  M  E  N  S  V  P  R  T  V  E  E  V  F  S  D  F  K  S  R  R  A  A  L  I  K  A  L  T  T   : D  V  E  K  F  Y  Q  Q  C  D  P   : E  K  E  N  L  C  L  Y  G  L  P  N  E  T  W  E  V  N  L  P  V  E  E  V  P  P  E  L  P  E  P  A  L  G  I  N  F  A  R  D  G  M  Q  E  K  D  W  L  S  L  V  A  V  H  S  D  S  W  L  L  S  V  A  F  Y  F  G  A  R  F  G  F  G  K  S  D  R :   K  R  L  F  Q  M  I  N  D  L  P  T  V  F  E  V  V  T  G  A  A  K  Q  T  R  D  A  P  H  N  N  S  N  K  S  K  S  S  G  K  :  P  R  Q  P  E  S  Q  L  K  A  V  K  V  S  P  P  K  M  E  N  D  S  G  E  E  E  E  E  E  E  E  D  E  Q  G  A  T  L  C  G  A  C  G  D  N  Y  A  T  D  E  F  W  I  C  C  D  I  C  E  R  W  F  H  G  K  C  V  K  I  T  P  A  K  A  E  H  I  K  Q  Y  K  C  P  S  C  S  S  K  R  A  K  V  *  K  L  R  Q  G  Q  L  S  G  D  V  G  R  C  R  S  F  S  S  V  I  K  C  Q  K  L  N  V  C  *  W  N  W  D  V  H  L  L  S  V  I  L  L  S  D  C  V  L  D  F  K  E  I  V  P  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74716" stop="74605"/>
                    <exon start="74474" stop="74442"/>
                    <exon start="72537" stop="72309"/>
                    <exon start="70275" stop="70155"/>
                    <exon start="70054" stop="69776"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLRVDKVIMENSVPRTVEEVFSDFKSRRAALIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFGKSDRKRLFQMINDLPTVFEVVTGAAKQTRDAPHNNSNKSKSSGKPRQPESQLKAVKVSPPKMENDSGEEEEEEEEDEQGATLCGACGDNYATDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSSKRAKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74941" e_stop="74605"/>
            <exon e_start="74474" e_stop="74442"/>
            <exon e_start="74161" e_stop="73958"/>
            <exon e_start="72537" e_stop="72463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="0.988"/>
          <exon-intron don_prob="0.932" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.569" acc_prob="0.981" e_score="0.985"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="74941" e_stop="74605" e_length="337"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74474" e_stop="74442" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.932" acc_prob="0.961">
            <gDNA_intron_boundary i_start="74441" i_stop="74162" i_length="280"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="74161" e_stop="73958" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.569" acc_prob="0.981">
            <gDNA_intron_boundary i_start="73957" i_stop="72538" i_length="1420"/>
          </intron>
          <exon e_serial="4" e_score="0.920">
            <gDNA_exon_boundary e_start="72537" e_stop="72463" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74941" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="74161" stop="73958"/>
              <exon start="72537" stop="72463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592391" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG : ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG : GGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAA : AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTC</gDNA_template>
            <first_frame> F  S  F  S  L  Y  N  L  C  H  F  T  S  Y  N  F  *  A  F  S  L  S  N  L  H  F  H  C  T  *  Q  T  N  F  Q  I  L  G  N  M  K  W  K  V  *  F  L  G  G  N  P  I  L  F  Q  P  T  S  C  F  F  S  F  P  K  T  Q  F  F  F  L  W  I  C  *  K  L  R  V  D  K  V  I  M  E  N  S  V  P  R  T  V  E  E  V  F  S  D  F  K  S  R  R  A  A  L  I  K  A  L  T  T   : D  V  E  K  F  Y  Q  Q  C  D  P   : G  S  G  L  N  L  M  V  R  G  F  *  L  L  E  S  F  C  H  S  M  F  F  F  G  C  Y  A  G  M  G  R  L  Y  F  C  E  V  V  Y  R  F  N  Q  K  S  N  S  S  A  C  T  T  E  L  S  *  F  Q  T  A  F  H  N  M  N  C  K   : K  K  E  N  L  C  L  Y  G  L  P  N  E  T  W  E  V  N  L  P  V  E  E  V  P  </first_frame>
            <second_frame>  S  L  S  L  S  T  I  S  A  T  L  L  L  T  I  S  K  L  F  P  Y  Q  I  F  I  F  T  A  H  S  K  L  I  F  K  F  W  A  T  *  S  G  K  F  S  S  W  G  E  T  L  F  Y  F  N  P  L  L  V  F  F  L  F  Q  R  L  N  F  F  S  C  G  F  V  R  N  C  V  *  T  R  L  L  W  K  I  R  Y  P  G  L  *  K  K  Y  S  A  I  S  K  V  V  E  L  L  *  L  K  H  L  P  Q  :  M  L  R  S  F  I  S  S  V  I  L  :  G  V  A  *  T  L  W  L  E  V  S  D  C  W  N  H  F  V  I  Q  C  S  S  L  G  V  M  Q  E  W  E  D  C  I  F  V  K  *  F  I  A  S  I  K  K  A  I  L  L  H  V  Q  Q  N  Y  H  D  F  K  L  H  S  T  T  *  I  V  K  :  K  R  R  T  C  V  S  M  G  F  L  M  K  H  G  K  *  T  S  R  W  K  R  C  L </second_frame>
            <third_frame>   L  F  L  S  L  Q  S  L  P  L  Y  F  L  Q  F  L  S  F  F  L  I  K  S  S  F  S  L  H  I  A  N  *  F  S  N  F  G  Q  H  E  V  E  S  L  V  L  G  G  K  P  Y  F  I  S  T  H  F  L  F  F  F  F  S  K  D  S  I  F  F  L  V  D  L  L  E  I  A  C  R  Q  G  Y  Y  G  K  F  G  T  Q  D  C  R  R  S  I  Q  R  F  Q  K  S  *  S  C  F  D  *  S  T  Y  H  R :   C  *  E  V  L  S  A  V  *  S  W :   E  W  P  K  P  Y  G  *  R  F  L  I  V  G  I  I  L  S  F  N  V  L  L  W  V  L  C  R  N  G  K  I  V  F  L  *  S  S  L  S  L  Q  S  K  K  Q  F  F  C  M  Y  N  R  I  I  M  I  S  N  C  I  P  Q  H  E  L  *  K :   K  G  E  L  V  S  L  W  A  S  *  *  N  M  G  S  K  P  P  G  G  R  G  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74843" stop="74634"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSNFGQHEVESLVLGGKPYFISTHFLFFFFSKDSIFFLVDLLEIACRQGYYGKFGTQDCRRSIQRFQKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="83394" PGL_stop="81339"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83394" e_stop="83033"/>
            <exon e_start="82648" e_stop="82380"/>
            <exon e_start="82273" e_stop="81339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.989"/>
          <exon-intron don_prob="1.000" acc_prob="0.290" e_score="0.996"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="83394" e_stop="83033" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="83032" i_stop="82649" i_length="384"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="82648" e_stop="82380" e_length="269"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.290">
            <gDNA_intron_boundary i_start="82379" i_stop="82274" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="82273" e_stop="81339" e_length="935"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83394" stop="83033"/>
              <exon start="82648" stop="82380"/>
              <exon start="82273" stop="81339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563422" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAATATATATATATATAATTCCCTTCATGACAAGTTACTATTACTAAAGTTATACTATCTTTTTTTTTTTATGGCAATTGTCCCTTTTATTACTACAAACATGAGTCAATCCCAACAACAACATCAACAACAACAAGATGATGATGATAACAACAACATCAACAACACTATTAAAGGAGATGATAATGATGATGACGATGATCATGAACACGACATGGTCATGCCTGGTTTTCGATTTCATCCTACTGAGGAAGAGCTTGTAGTAGTTTTATCTTCGCCGTAAGGTTGAAGGAAAACGTTTTAATGTGGAACTCATCACTTTTCTTGATCTTTATCGTTATGACCCTTGGGAGCTTCCTG : CTTTGGCAGCAATTGGAGAGAAGGAGTGGTATTTCTATGTGCCAAGAGATAGAAAGTATAGAAATGGAGATAGGCCAAATAGGGTTACAACATCAGGGTATTGGAAGGCTACTGGAGCTGATAGAATGATTAGAACGGAGAATTCGCGGTCCATTGGCCTGAAAAAGACATTGGTTTTCTACTCAGGGAAGGCTCCTAAAGGCATAAGAAGTAGTTGGATTATGAATGAATATCGTCTTCCACATCATGAAACTGAACGCCTACAAAAG : GCAGAAATTTCACTTTGTCGTGTCTATAAAAGAGCTGGAGTGGAAGACCATCCATCTCTTCCAAGATCACTACTAACAACAAGAGCATCATCATCTTCTTCTTCTAGAGGAACAACTCCCATCAAAAAACAACAAGTAGCACAACAAGACTCATCATTAATCTCTCCGTTGTACCTAGGACAATCTTCCCAACAACAAATCGACGAAAAATTAAGTACTGAAACAAGTGCAAGTAGTACTAGTACTGATCACCATCACCATCATCAGCATCATGTTGCTACATCACTCGGGCTCAATTCCCTCTCAAATTCCTACACTAACATCGCGCTAGACCCTATTGGGGAGCGCGGTTAATATCACTACATCAACCTTAACACCTTTCACATCATTAGTAGCAACAACAAATAATACCACTGATGATCTCCATAGACTAATAAACTTAGACCAAGTCGTCGCGTTTCATAATAATCAACACCATTTTCATCCTCCTCCTGGTGTTGTGCCCCAACAATATCCTCCTCCATTATTACTGCAACAACCACAATCTTTACTTCATCAAGGATCACTTCCATCTTCCGCGGCCGCGGCTTTTTCAGACAGATTGTGGGAGTGGAATTCAATTAATCAAACAGATGGAAGCTGCAAAGATGATCATTATGATCAAGGCAATAATCCCTTCAAGTAATTTCATCATCACTAAACTGCACATATACATATCATATATATATATCTACTGATATTTATAATTTTACTAGCTAGCTAGCTAGCTCTATGATCAAATTAAATAATGTGTGTGTGGGATCTTATTGTTAGGGTTTTGGTTAGTTCTAATTAGTTAGGGTACTATTATTAAGCTATTGTAATCTTTCTAATTACTTTTCTGTACTTGATGAAATTAGATATGTGCTAATTAAGTTAGCTCTACAGTTCAATTC</gDNA_template>
            <first_frame> L  N  I  Y  I  Y  N  S  L  H  D  K  L  L  L  L  K  L  Y  Y  L  F  F  F  M  A  I  V  P  F  I  T  T  N  M  S  Q  S  Q  Q  Q  H  Q  Q  Q  Q  D  D  D  D  N  N  N  I  N  N  T  I  K  G  D  D  N  D  D  D  D  D  H  E  H  D  M  V  M  P  G  F  R  F  H  P  T  E  E  E  L  V  V  V  L  S  S  P  *  G  *  R  K  T  F  *  C  G  T  H  H  F  S  *  S  L  S  L  *  P  L  G  A  S  C :   F  G  S  N  W  R  E  G  V  V  F  L  C  A  K  R  *  K  V  *  K  W  R  *  A  K  *  G  Y  N  I  R  V  L  E  G  Y  W  S  *  *  N  D  *  N  G  E  F  A  V  H  W  P  E  K  D  I  G  F  L  L  R  E  G  S  *  R  H  K  K  *  L  D  Y  E  *  I  S  S  S  T  S  *  N  *  T  P  T  K   : G  R  N  F  T  L  S  C  L  *  K  S  W  S  G  R  P  S  I  S  S  K  I  T  T  N  N  K  S  I  I  I  F  F  F  *  R  N  N  S  H  Q  K  T  T  S  S  T  T  R  L  I  I  N  L  S  V  V  P  R  T  I  F  P  T  T  N  R  R  K  I  K  Y  *  N  K  C  K  *  Y  *  Y  *  S  P  S  P  S  S  A  S  C  C  Y  I  T  R  A  Q  F  P  L  K  F  L  H  *  H  R  A  R  P  Y  W  G  A  R  L  I  S  L  H  Q  P  *  H  L  S  H  H  *  *  Q  Q  Q  I  I  P  L  M  I  S  I  D  *  *  T  *  T  K  S  S  R  F  I  I  I  N  T  I  F  I  L  L  L  V  L  C  P  N  N  I  L  L  H  Y  Y  C  N  N  H  N  L  Y  F  I  K  D  H  F  H  L  P  R  P  R  L  F  Q  T  D  C  G  S  G  I  Q  L  I  K  Q  M  E  A  A  K  M  I  I  M  I  K  A  I  I  P  S  S  N  F  I  I  T  K  L  H  I  Y  I  S  Y  I  Y  I  Y  *  Y  L  *  F  Y  *  L  A  S  *  L  Y  D  Q  I  K  *  C  V  C  G  I  L  L  L  G  F  W  L  V  L  I  S  *  G  T  I  I  K  L  L  *  S  F  *  L  L  F  C  T  *  *  N  *  I  C  A  N  *  V  S  S  T  V  Q  F </first_frame>
            <second_frame>  *  I  Y  I  Y  I  I  P  F  M  T  S  Y  Y  Y  *  S  Y  T  I  F  F  F  L  W  Q  L  S  L  L  L  L  Q  T  *  V  N  P  N  N  N  I  N  N  N  K  M  M  M  I  T  T  T  S  T  T  L  L  K  E  M  I  M  M  M  T  M  I  M  N  T  T  W  S  C  L  V  F  D  F  I  L  L  R  K  S  L  *  *  F  Y  L  R  R  K  V  E  G  K  R  F  N  V  E  L  I  T  F  L  D  L  Y  R  Y  D  P  W  E  L  P   : A  L  A  A  I  G  E  K  E  W  Y  F  Y  V  P  R  D  R  K  Y  R  N  G  D  R  P  N  R  V  T  T  S  G  Y  W  K  A  T  G  A  D  R  M  I  R  T  E  N  S  R  S  I  G  L  K  K  T  L  V  F  Y  S  G  K  A  P  K  G  I  R  S  S  W  I  M  N  E  Y  R  L  P  H  H  E  T  E  R  L  Q  K  :  A  E  I  S  L  C  R  V  Y  K  R  A  G  V  E  D  H  P  S  L  P  R  S  L  L  T  T  R  A  S  S  S  S  S  S  R  G  T  T  P  I  K  K  Q  Q  V  A  Q  Q  D  S  S  L  I  S  P  L  Y  L  G  Q  S  S  Q  Q  Q  I  D  E  K  L  S  T  E  T  S  A  S  S  T  S  T  D  H  H  H  H  H  Q  H  H  V  A  T  S  L  G  L  N  S  L  S  N  S  Y  T  N  I  A  L  D  P  I  G  E  R  G  *  Y  H  Y  I  N  L  N  T  F  H  I  I  S  S  N  N  K  *  Y  H  *  *  S  P  *  T  N  K  L  R  P  S  R  R  V  S  *  *  S  T  P  F  S  S  S  S  W  C  C  A  P  T  I  S  S  S  I  I  T  A  T  T  T  I  F  T  S  S  R  I  T  S  I  F  R  G  R  G  F  F  R  Q  I  V  G  V  E  F  N  *  S  N  R  W  K  L  Q  R  *  S  L  *  S  R  Q  *  S  L  Q  V  I  S  S  S  L  N  C  T  Y  T  Y  H  I  Y  I  S  T  D  I  Y  N  F  T  S  *  L  A  S  S  M  I  K  L  N  N  V  C  V  G  S  Y  C  *  G  F  G  *  F  *  L  V  R  V  L  L  L  S  Y  C  N  L  S  N  Y  F  S  V  L  D  E  I  R  Y  V  L  I  K  L  A  L  Q  F  N   </second_frame>
            <third_frame>   E  Y  I  Y  I  *  F  P  S  *  Q  V  T  I  T  K  V  I  L  S  F  F  F  Y  G  N  C  P  F  Y  Y  Y  K  H  E  S  I  P  T  T  T  S  T  T  T  R  *  *  *  *  Q  Q  H  Q  Q  H  Y  *  R  R  *  *  *  *  *  R  *  S  *  T  R  H  G  H  A  W  F  S  I  S  S  Y  *  G  R  A  C  S  S  F  I  F  A  V  R  L  K  E  N  V  L  M  W  N  S  S  L  F  L  I  F  I  V  M  T  L  G  S  F  L  :  L  W  Q  Q  L  E  R  R  S  G  I  S  M  C  Q  E  I  E  S  I  E  M  E  I  G  Q  I  G  L  Q  H  Q  G  I  G  R  L  L  E  L  I  E  *  L  E  R  R  I  R  G  P  L  A  *  K  R  H  W  F  S  T  Q  G  R  L  L  K  A  *  E  V  V  G  L  *  M  N  I  V  F  H  I  M  K  L  N  A  Y  K  R :   Q  K  F  H  F  V  V  S  I  K  E  L  E  W  K  T  I  H  L  F  Q  D  H  Y  *  Q  Q  E  H  H  H  L  L  L  L  E  E  Q  L  P  S  K  N  N  K  *  H  N  K  T  H  H  *  S  L  R  C  T  *  D  N  L  P  N  N  K  S  T  K  N  *  V  L  K  Q  V  Q  V  V  L  V  L  I  T  I  T  I  I  S  I  M  L  L  H  H  S  G  S  I  P  S  Q  I  P  T  L  T  S  R  *  T  L  L  G  S  A  V  N  I  T  T  S  T  L  T  P  F  T  S  L  V  A  T  T  N  N  T  T  D  D  L  H  R  L  I  N  L  D  Q  V  V  A  F  H  N  N  Q  H  H  F  H  P  P  P  G  V  V  P  Q  Q  Y  P  P  P  L  L  L  Q  Q  P  Q  S  L  L  H  Q  G  S  L  P  S  S  A  A  A  A  F  S  D  R  L  W  E  W  N  S  I  N  Q  T  D  G  S  C  K  D  D  H  Y  D  Q  G  N  N  P  F  K  *  F  H  H  H  *  T  A  H  I  H  I  I  Y  I  Y  L  L  I  F  I  I  L  L  A  S  *  L  A  L  *  S  N  *  I  M  C  V  W  D  L  I  V  R  V  L  V  S  S  N  *  L  G  Y  Y  Y  *  A  I  V  I  F  L  I  T  F  L  Y  L  M  K  L  D  M  C  *  L  S  *  L  Y  S  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83126" stop="83033"/>
                    <exon start="82648" stop="82380"/>
                    <exon start="82273" stop="81920"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENSRSIGLKKTLVFYSGKAPKGIRSSWIMNEYRLPHHETERLQKAEISLCRVYKRAGVEDHPSLPRSLLTTRASSSSSSRGTTPIKKQQVAQQDSSLISPLYLGQSSQQQIDEKLSTETSASSTSTDHHHHHQHHVATSLGLNSLSNSYTNIALDPIGERG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81942" stop="81589"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLLGSAVNITTSTLTPFTSLVATTNNTTDDLHRLINLDQVVAFHNNQHHFHPPPGVVPQQYPPPLLLQQPQSLLHQGSLPSSAAAAFSDRLWEWNSINQTDGSCKDDHYDQGNNPFK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83394" stop="83110"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNIYIYNSLHDKLLLLKLYYLFFFMAIVPFITTNMSQSQQQHQQQQDDDDNNNINNTIKGDDNDDDDDHEHDMVMPGFRFHPTEEELVVVLSSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="103437" PGL_stop="104840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103437" e_stop="103619"/>
            <exon e_start="103705" e_stop="103951"/>
            <exon e_start="104020" e_stop="104178"/>
            <exon e_start="104261" e_stop="104407"/>
            <exon e_start="104695" e_stop="104840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.923" e_score="0.995"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="103437" e_stop="103619" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.923">
            <gDNA_intron_boundary i_start="103620" i_stop="103704" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103705" e_stop="103951" e_length="247"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="103952" i_stop="104019" i_length="68"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104020" e_stop="104178" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104179" i_stop="104260" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="104261" e_stop="104407" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104408" i_stop="104694" i_length="287"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="104695" e_stop="104840" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103437" stop="103619"/>
              <exon start="103705" stop="103951"/>
              <exon start="104020" stop="104178"/>
              <exon start="104261" stop="104407"/>
              <exon start="104695" stop="104840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573068" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACAATCTAACATTGTACTTTGATCTAACAACCCCCACCCCCTTCTCAACCATATATATTCATCTATATTTTCCCTCATTTTGAGGAACAAAACTAAAATAAAAGCTCTCACATATCCTTTTTTTTGGTGGCTCAAGATGAGTAATCTTACTTCTAGTCCTGCACCTTGTAGTAGATCATG : GTCAATTAGTGAGGACTCATTGAGAAGATATGTGTTCTATGCAAGTGAAAATTGCATCCAGGAGTTGTTATCAGCTTCAGATTCAAAAAGCTGTAACGATGGCTGGAAAATACTCGGCGTAGATAACGGCGTTGAGATAGCTAAACGCCGTTCAGGTTCCCTTCACACTTTCCGTAGCCGTTGGTTACTCAAATCTGTTTCTCCTCAACAATTCATCACTGTAGCTAACGCCATTGATGCTGCAAGG : CAATGGGACGGGGACTTAGTAGAAGCAAGATACATAAAGGATTTGGAAGATAATTTGAGTATTATACGTCTTAGATTTGGGGAAAATTCGAAGCCTTTATTCAGAAACAGAGAATTCATTGTCTATGAACGTCGTGAAACTATGGATGATGGAACACTG : GTAGTAGCAGTAGCTTCACTTCCAAAAGAGATAGCAGCAGGTTTGCACCCAAAGCAAAACAATGCAATAAGAGGTTTATTGTTGCAATCTGGATGGGTTGTTGAGAAAATTGATCATGATTCTTGCATGGTCACTTACGTTGTCCAG : TTGGATCCAGCAGGATGGTTACCAAAATGCTTCGTGAATCGGTTGAACACAAAGTTGGTTATGATCATTGATAACCTTAAAAAGCAAGTGCTTTCTAGCCCTACCAATAGTGATGATAGTACTTGATTTAATTACTACTTTTGTAC</gDNA_template>
            <first_frame> K  T  I  *  H  C  T  L  I  *  Q  P  P  P  P  S  Q  P  Y  I  F  I  Y  I  F  P  H  F  E  E  Q  N  *  N  K  S  S  H  I  S  F  F  L  V  A  Q  D  E  *  S  Y  F  *  S  C  T  L  *  *  I  M  :  V  N  *  *  G  L  I  E  K  I  C  V  L  C  K  *  K  L  H  P  G  V  V  I  S  F  R  F  K  K  L  *  R  W  L  E  N  T  R  R  R  *  R  R  *  D  S  *  T  P  F  R  F  P  S  H  F  P  *  P  L  V  T  Q  I  C  F  S  S  T  I  H  H  C  S  *  R  H  *  C  C  K   : A  M  G  R  G  L  S  R  S  K  I  H  K  G  F  G  R  *  F  E  Y  Y  T  S  *  I  W  G  K  F  E  A  F  I  Q  K  Q  R  I  H  C  L  *  T  S  *  N  Y  G  *  W  N  T   : G  S  S  S  S  F  T  S  K  R  D  S  S  R  F  A  P  K  A  K  Q  C  N  K  R  F  I  V  A  I  W  M  G  C  *  E  N  *  S  *  F  L  H  G  H  L  R  C  P   : V  G  S  S  R  M  V  T  K  M  L  R  E  S  V  E  H  K  V  G  Y  D  H  *  *  P  *  K  A  S  A  F  *  P  Y  Q  *  *  *  *  Y  L  I  *  L  L  L  L  Y </first_frame>
            <second_frame>  K  Q  S  N  I  V  L  *  S  N  N  P  H  P  L  L  N  H  I  Y  S  S  I  F  S  L  I  L  R  N  K  T  K  I  K  A  L  T  Y  P  F  F  W  W  L  K  M  S  N  L  T  S  S  P  A  P  C  S  R  S  W :   S  I  S  E  D  S  L  R  R  Y  V  F  Y  A  S  E  N  C  I  Q  E  L  L  S  A  S  D  S  K  S  C  N  D  G  W  K  I  L  G  V  D  N  G  V  E  I  A  K  R  R  S  G  S  L  H  T  F  R  S  R  W  L  L  K  S  V  S  P  Q  Q  F  I  T  V  A  N  A  I  D  A  A  R  :  Q  W  D  G  D  L  V  E  A  R  Y  I  K  D  L  E  D  N  L  S  I  I  R  L  R  F  G  E  N  S  K  P  L  F  R  N  R  E  F  I  V  Y  E  R  R  E  T  M  D  D  G  T  L  :  V  V  A  V  A  S  L  P  K  E  I  A  A  G  L  H  P  K  Q  N  N  A  I  R  G  L  L  L  Q  S  G  W  V  V  E  K  I  D  H  D  S  C  M  V  T  Y  V  V  Q  :  L  D  P  A  G  W  L  P  K  C  F  V  N  R  L  N  T  K  L  V  M  I  I  D  N  L  K  K  Q  V  L  S  S  P  T  N  S  D  D  S  T  *  F  N  Y  Y  F  C   </second_frame>
            <third_frame>   N  N  L  T  L  Y  F  D  L  T  T  P  T  P  F  S  T  I  Y  I  H  L  Y  F  P  S  F  *  G  T  K  L  K  *  K  L  S  H  I  L  F  F  G  G  S  R  *  V  I  L  L  L  V  L  H  L  V  V  D  H   : G  Q  L  V  R  T  H  *  E  D  M  C  S  M  Q  V  K  I  A  S  R  S  C  Y  Q  L  Q  I  Q  K  A  V  T  M  A  G  K  Y  S  A  *  I  T  A  L  R  *  L  N  A  V  Q  V  P  F  T  L  S  V  A  V  G  Y  S  N  L  F  L  L  N  N  S  S  L  *  L  T  P  L  M  L  Q  G :   N  G  T  G  T  *  *  K  Q  D  T  *  R  I  W  K  I  I  *  V  L  Y  V  L  D  L  G  K  I  R  S  L  Y  S  E  T  E  N  S  L  S  M  N  V  V  K  L  W  M  M  E  H  W :   *  *  Q  *  L  H  F  Q  K  R  *  Q  Q  V  C  T  Q  S  K  T  M  Q  *  E  V  Y  C  C  N  L  D  G  L  L  R  K  L  I  M  I  L  A  W  S  L  T  L  S  S :   W  I  Q  Q  D  G  Y  Q  N  A  S  *  I  G  *  T  Q  S  W  L  *  S  L  I  T  L  K  S  K  C  F  L  A  L  P  I  V  M  I  V  L  D  L  I  T  T  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103462" stop="103619"/>
                    <exon start="103705" stop="103951"/>
                    <exon start="104020" stop="104178"/>
                    <exon start="104261" stop="104407"/>
                    <exon start="104695" stop="104820"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNNPHPLLNHIYSSIFSLILRNKTKIKALTYPFFWWLKMSNLTSSPAPCSRSWSISEDSLRRYVFYASENCIQELLSASDSKSCNDGWKILGVDNGVEIAKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAARQWDGDLVEARYIKDLEDNLSIIRLRFGENSKPLFRNREFIVYERRETMDDGTLVVAVASLPKEIAAGLHPKQNNAIRGLLLQSGWVVEKIDHDSCMVTYVVQLDPAGWLPKCFVNRLNTKLVMIIDNLKKQVLSSPTNSDDST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="109938" PGL_stop="108787"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109938" e_stop="109904"/>
            <exon e_start="109524" e_stop="108787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.965" e_score="0.971"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="109938" e_stop="109904" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.965">
            <gDNA_intron_boundary i_start="109903" i_stop="109525" i_length="379"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="109524" e_stop="108787" e_length="738"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109938" stop="109904"/>
              <exon start="109524" stop="108787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582577" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGCTATGTCAGCACTCAGGTTAAAGGAACAATG : GGCTACATGGATCCAGAGTACTACACAACACAACAGTTGACTGAGAAGAGTGATGTATATAGCTTTGGAGTTCTGCTGCTGGAGCTTATAACAGCACGGAGTCCTATTGTGAGAGGAAAATACATTGTGAAGGAATTGAGGCAAGCAATAGACAAGTCTAAAGACATGTACAACATTGATGAGTTTGTTGATCCTGCTATCCCCTCAAACATGACACCTATAAGCTTCAGGAAGTTTGTTGATCTAGCTTTCATGTGCCTCGAAGATGCAGGAGCTAATAGGCCAACAATGGGTGAGGTAGTGAAAGAGATTGAGAATATCATGGAAATAGATGGATTGAACAGTTGCGCTGAATCTAGATCAACTTCTGTGAGCCACGAAGGAACCAGCGCAACCTTTGATCATCCTTACAGTGAGGAAAGCCTAAATCGTTACAATGGGGTCACCAATTCGCGATAAACATCAACTCTTCTCATGGAACCAGGTGCATTGTCATAGAAATGGAAAGTCATTCAAGCAACTGTTGTGCTTTTGTGTTAGCTGTGTACACTCTGTGCACCTCTGTCATATGTGTGCGGCGTAAATAGCCTTATACTAGAAATGATTCAAAAATCCATCTAAGGATCTTCATAAACAGCCTTGTATGTTTCAACTGTTTGCTTCTGATAATCCAGGAGCTAGACTCCGTGGATTCAAAATGAGTGATTTTATTGTATTTTGGACTTTTAGTCACTCATT</gDNA_template>
            <first_frame> R  A  M  S  A  L  R  L  K  E  Q  W :   A  T  W  I  Q  S  T  T  Q  H  N  S  *  L  R  R  V  M  Y  I  A  L  E  F  C  C  W  S  L  *  Q  H  G  V  L  L  *  E  E  N  T  L  *  R  N  *  G  K  Q  *  T  S  L  K  T  C  T  T  L  M  S  L  L  I  L  L  S  P  Q  T  *  H  L  *  A  S  G  S  L  L  I  *  L  S  C  A  S  K  M  Q  E  L  I  G  Q  Q  W  V  R  *  *  K  R  L  R  I  S  W  K  *  M  D  *  T  V  A  L  N  L  D  Q  L  L  *  A  T  K  E  P  A  Q  P  L  I  I  L  T  V  R  K  A  *  I  V  T  M  G  S  P  I  R  D  K  H  Q  L  F  S  W  N  Q  V  H  C  H  R  N  G  K  S  F  K  Q  L  L  C  F  C  V  S  C  V  H  S  V  H  L  C  H  M  C  A  A  *  I  A  L  Y  *  K  *  F  K  N  P  S  K  D  L  H  K  Q  P  C  M  F  Q  L  F  A  S  D  N  P  G  A  R  L  R  G  F  K  M  S  D  F  I  V  F  W  T  F  S  H  S   </first_frame>
            <second_frame>  G  L  C  Q  H  S  G  *  R  N  N   : G  L  H  G  S  R  V  L  H  N  T  T  V  D  *  E  E  *  C  I  *  L  W  S  S  A  A  G  A  Y  N  S  T  E  S  Y  C  E  R  K  I  H  C  E  G  I  E  A  S  N  R  Q  V  *  R  H  V  Q  H  *  *  V  C  *  S  C  Y  P  L  K  H  D  T  Y  K  L  Q  E  V  C  *  S  S  F  H  V  P  R  R  C  R  S  *  *  A  N  N  G  *  G  S  E  R  D  *  E  Y  H  G  N  R  W  I  E  Q  L  R  *  I  *  I  N  F  C  E  P  R  R  N  Q  R  N  L  *  S  S  L  Q  *  G  K  P  K  S  L  Q  W  G  H  Q  F  A  I  N  I  N  S  S  H  G  T  R  C  I  V  I  E  M  E  S  H  S  S  N  C  C  A  F  V  L  A  V  Y  T  L  C  T  S  V  I  C  V  R  R  K  *  P  Y  T  R  N  D  S  K  I  H  L  R  I  F  I  N  S  L  V  C  F  N  C  L  L  L  I  I  Q  E  L  D  S  V  D  S  K  *  V  I  L  L  Y  F  G  L  L  V  T  H  </second_frame>
            <third_frame>   G  Y  V  S  T  Q  V  K  G  T  M  :  G  Y  M  D  P  E  Y  Y  T  T  Q  Q  L  T  E  K  S  D  V  Y  S  F  G  V  L  L  L  E  L  I  T  A  R  S  P  I  V  R  G  K  Y  I  V  K  E  L  R  Q  A  I  D  K  S  K  D  M  Y  N  I  D  E  F  V  D  P  A  I  P  S  N  M  T  P  I  S  F  R  K  F  V  D  L  A  F  M  C  L  E  D  A  G  A  N  R  P  T  M  G  E  V  V  K  E  I  E  N  I  M  E  I  D  G  L  N  S  C  A  E  S  R  S  T  S  V  S  H  E  G  T  S  A  T  F  D  H  P  Y  S  E  E  S  L  N  R  Y  N  G  V  T  N  S  R  *  T  S  T  L  L  M  E  P  G  A  L  S  *  K  W  K  V  I  Q  A  T  V  V  L  L  C  *  L  C  T  L  C  A  P  L  S  Y  V  C  G  V  N  S  L  I  L  E  M  I  Q  K  S  I  *  G  S  S  *  T  A  L  Y  V  S  T  V  C  F  *  *  S  R  S  *  T  P  W  I  Q  N  E  *  F  Y  C  I  L  D  F  *  S  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109936" stop="109904"/>
                    <exon start="109524" stop="109066"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYVSTQVKGTMGYMDPEYYTTQQLTEKSDVYSFGVLLLELITARSPIVRGKYIVKELRQAIDKSKDMYNIDEFVDPAIPSNMTPISFRKFVDLAFMCLEDAGANRPTMGEVVKEIENIMEIDGLNSCAESRSTSVSHEGTSATFDHPYSEESLNRYNGVTNSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="119910" PGL_stop="119631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119910" e_stop="119631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119910" e_stop="119631" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119910" stop="119631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAATGGACAGATCAAAAGACATGTATAACCTTCAAGACATTTTGGATCCTGCAGTTCGCGCAGGTGCAACTCCTAGAAGTTTAGAGAAGTTTGTGGATTTAGCACTCAAATGTGTTGAAGAAGAAGGAGCCAACAGACCTTCAATGAGTGAAGTGGTGAAAGAGATCGAAAATATCATGGAGATGGCGGGACTGAACCCGAATGCAGACTCTGCATCTTCTTCAGCAACTTATGAAGGACCAAACAAAGGCATGAACCATCCATATACTGATGAAAGTC</gDNA_template>
            <first_frame> A  M  D  R  S  K  D  M  Y  N  L  Q  D  I  L  D  P  A  V  R  A  G  A  T  P  R  S  L  E  K  F  V  D  L  A  L  K  C  V  E  E  E  G  A  N  R  P  S  M  S  E  V  V  K  E  I  E  N  I  M  E  M  A  G  L  N  P  N  A  D  S  A  S  S  S  A  T  Y  E  G  P  N  K  G  M  N  H  P  Y  T  D  E  S  </first_frame>
            <second_frame>  Q  W  T  D  Q  K  T  C  I  T  F  K  T  F  W  I  L  Q  F  A  Q  V  Q  L  L  E  V  *  R  S  L  W  I  *  H  S  N  V  L  K  K  K  E  P  T  D  L  Q  *  V  K  W  *  K  R  S  K  I  S  W  R  W  R  D  *  T  R  M  Q  T  L  H  L  L  Q  Q  L  M  K  D  Q  T  K  A  *  T  I  H  I  L  M  K  V </second_frame>
            <third_frame>   N  G  Q  I  K  R  H  V  *  P  S  R  H  F  G  S  C  S  S  R  R  C  N  S  *  K  F  R  E  V  C  G  F  S  T  Q  M  C  *  R  R  R  S  Q  Q  T  F  N  E  *  S  G  E  R  D  R  K  Y  H  G  D  G  G  T  E  P  E  C  R  L  C  I  F  F  S  N  L  *  R  T  K  Q  R  H  E  P  S  I  Y  *  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119910" stop="119632"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMDRSKDMYNLQDILDPAVRAGATPRSLEKFVDLALKCVEEEGANRPSMSEVVKEIENIMEMAGLNPNADSASSSATYEGPNKGMNHPYTDES</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="122254" PGL_stop="120400"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122254" e_stop="122184"/>
            <exon e_start="122037" e_stop="121556"/>
            <exon e_start="121390" e_stop="121232"/>
            <exon e_start="121146" e_stop="121010"/>
            <exon e_start="120836" e_stop="120617"/>
            <exon e_start="120511" e_stop="120400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.980" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.896" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122254" e_stop="122184" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122183" i_stop="122038" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="122037" e_stop="121556" e_length="482"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.980">
            <gDNA_intron_boundary i_start="121555" i_stop="121391" i_length="165"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121390" e_stop="121232" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121231" i_stop="121147" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121146" e_stop="121010" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.896">
            <gDNA_intron_boundary i_start="121009" i_stop="120837" i_length="173"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120836" e_stop="120617" e_length="220"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="120616" i_stop="120512" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="120511" e_stop="120400" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122254" stop="122184"/>
              <exon start="122037" stop="121556"/>
              <exon start="121390" stop="121232"/>
              <exon start="121146" stop="121010"/>
              <exon start="120836" stop="120617"/>
              <exon start="120511" stop="120400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTCATTGATGTGCAAAGAAATCTTATTGAATCATTTACTCAAAGACCAGGGTACCCCTTTCAGATAAT : GCTTGCAGGTAATCCTTTTTGCAACGAAGGAGGAGATGGGACACAAGATTACTGTGTCAAAACTCAACAAACTGAGACATATTCAACCCCACCAGAGAATTGCTTGCCAACTGACTGCAGCTCTAATCGAGTTTCTAGTCCTACCTGTAAATGTGCTTTTCCATATACAGGAAACATAGTCTTCAGAGCTCCTTCCTTTTCAAACTTGGGAAATAGAACTACTTATGAGACTCTCCAAAAGTCCTTGATGCAAACCTTTCAAAACCGTCAACTGCCCGTGGAATCAGTTTCCCTCAGTAACCCAACAAAAAATTTGGATGACTACCTTGTAATACACCTGCAAGTTTTTCCATCTACCCAAGATTTTTTCAATCGAACTGGAGTTTCTGGAATAGGTTTTGTGCTTAGTAATCAGACTTTCAAGCCCCCATCATCATTTGGACCTTTCTTCTTCATTGGTGAAGGCTATAAATACTTTGACG : GGGCATCCTCCGAATCAAAAAACTCAAGCAGTACAGGCATTATTATTGGAGCGGCAGTTGGTGGCTCTGTCATTGCAATTATAGCACTAATCATTGGAGTTTATGCTTTCCGGCAAAAGAAAAGAGCTGAAGATGCTGCAAAGAGGAGCGATCCTTTTG : CATCCTGGGACTCGAACAAACATAGTGGTGCTGTACCACAGCTGACGGGAGCTAGATTTTTCTCATTTGAGGAGCTCAAAAAATGGACCAATAATTTTTCAGAAACCAATGATATTGGTTGTGGTGGTTATGGAAAG : GTTTACAGAGGAACTCTTCCAAATGGAGAATTGGTTGCAATTAAAAGAGCTCTACAAGGGTCTATGCAGGGTGCACACGAGTTCAAAACTGAGATAGAGCTTCTCTCAAGGGTTCATCACAAGAACGTCGTTGGCCTTGCTGGCTTTTGTTTCGATCAAGCTGAACAGATGCTTGTGTACGAGTACATTCCTAATGGCACCTTAAAAGACGGTCTTTCAG : GCAAGACTGGCATCAGGTTAGATTGGATGAGGAGACTGAGGATAGCCGTTGGAGCAGCCAGAGGTTTGCAGTATTTGCATGACCTTGTCAATCCTCCCATCATACACAGGGA</gDNA_template>
            <first_frame> Q  L  I  D  V  Q  R  N  L  I  E  S  F  T  Q  R  P  G  Y  P  F  Q  I  M :   L  A  G  N  P  F  C  N  E  G  G  D  G  T  Q  D  Y  C  V  K  T  Q  Q  T  E  T  Y  S  T  P  P  E  N  C  L  P  T  D  C  S  S  N  R  V  S  S  P  T  C  K  C  A  F  P  Y  T  G  N  I  V  F  R  A  P  S  F  S  N  L  G  N  R  T  T  Y  E  T  L  Q  K  S  L  M  Q  T  F  Q  N  R  Q  L  P  V  E  S  V  S  L  S  N  P  T  K  N  L  D  D  Y  L  V  I  H  L  Q  V  F  P  S  T  Q  D  F  F  N  R  T  G  V  S  G  I  G  F  V  L  S  N  Q  T  F  K  P  P  S  S  F  G  P  F  F  F  I  G  E  G  Y  K  Y  F  D   : G  A  S  S  E  S  K  N  S  S  S  T  G  I  I  I  G  A  A  V  G  G  S  V  I  A  I  I  A  L  I  I  G  V  Y  A  F  R  Q  K  K  R  A  E  D  A  A  K  R  S  D  P  F   : A  S  W  D  S  N  K  H  S  G  A  V  P  Q  L  T  G  A  R  F  F  S  F  E  E  L  K  K  W  T  N  N  F  S  E  T  N  D  I  G  C  G  G  Y  G  K  :  V  Y  R  G  T  L  P  N  G  E  L  V  A  I  K  R  A  L  Q  G  S  M  Q  G  A  H  E  F  K  T  E  I  E  L  L  S  R  V  H  H  K  N  V  V  G  L  A  G  F  C  F  D  Q  A  E  Q  M  L  V  Y  E  Y  I  P  N  G  T  L  K  D  G  L  S   : G  K  T  G  I  R  L  D  W  M  R  R  L  R  I  A  V  G  A  A  R  G  L  Q  Y  L  H  D  L  V  N  P  P  I  I  H  R   </first_frame>
            <second_frame>  S  S  L  M  C  K  E  I  L  L  N  H  L  L  K  D  Q  G  T  P  F  R  *   : C  L  Q  V  I  L  F  A  T  K  E  E  M  G  H  K  I  T  V  S  K  L  N  K  L  R  H  I  Q  P  H  Q  R  I  A  C  Q  L  T  A  A  L  I  E  F  L  V  L  P  V  N  V  L  F  H  I  Q  E  T  *  S  S  E  L  L  P  F  Q  T  W  E  I  E  L  L  M  R  L  S  K  S  P  *  C  K  P  F  K  T  V  N  C  P  W  N  Q  F  P  S  V  T  Q  Q  K  I  W  M  T  T  L  *  Y  T  C  K  F  F  H  L  P  K  I  F  S  I  E  L  E  F  L  E  *  V  L  C  L  V  I  R  L  S  S  P  H  H  H  L  D  L  S  S  S  L  V  K  A  I  N  T  L  T  :  G  H  P  P  N  Q  K  T  Q  A  V  Q  A  L  L  L  E  R  Q  L  V  A  L  S  L  Q  L  *  H  *  S  L  E  F  M  L  S  G  K  R  K  E  L  K  M  L  Q  R  G  A  I  L  L  :  H  P  G  T  R  T  N  I  V  V  L  Y  H  S  *  R  E  L  D  F  S  H  L  R  S  S  K  N  G  P  I  I  F  Q  K  P  M  I  L  V  V  V  V  M  E  R :   F  T  E  E  L  F  Q  M  E  N  W  L  Q  L  K  E  L  Y  K  G  L  C  R  V  H  T  S  S  K  L  R  *  S  F  S  Q  G  F  I  T  R  T  S  L  A  L  L  A  F  V  S  I  K  L  N  R  C  L  C  T  S  T  F  L  M  A  P  *  K  T  V  F  Q  :  A  R  L  A  S  G  *  I  G  *  G  D  *  G  *  P  L  E  Q  P  E  V  C  S  I  C  M  T  L  S  I  L  P  S  Y  T  G  </second_frame>
            <third_frame>   A  H  *  C  A  K  K  S  Y  *  I  I  Y  S  K  T  R  V  P  L  S  D  N  :  A  C  R  *  S  F  L  Q  R  R  R  R  W  D  T  R  L  L  C  Q  N  S  T  N  *  D  I  F  N  P  T  R  E  L  L  A  N  *  L  Q  L  *  S  S  F  *  S  Y  L  *  M  C  F  S  I  Y  R  K  H  S  L  Q  S  S  F  L  F  K  L  G  K  *  N  Y  L  *  D  S  P  K  V  L  D  A  N  L  S  K  P  S  T  A  R  G  I  S  F  P  Q  *  P  N  K  K  F  G  *  L  P  C  N  T  P  A  S  F  S  I  Y  P  R  F  F  Q  S  N  W  S  F  W  N  R  F  C  A  *  *  S  D  F  Q  A  P  I  I  I  W  T  F  L  L  H  W  *  R  L  *  I  L  *  R :   G  I  L  R  I  K  K  L  K  Q  Y  R  H  Y  Y  W  S  G  S  W  W  L  C  H  C  N  Y  S  T  N  H  W  S  L  C  F  P  A  K  E  K  S  *  R  C  C  K  E  E  R  S  F  C :   I  L  G  L  E  Q  T  *  W  C  C  T  T  A  D  G  S  *  I  F  L  I  *  G  A  Q  K  M  D  Q  *  F  F  R  N  Q  *  Y  W  L  W  W  L  W  K   : G  L  Q  R  N  S  S  K  W  R  I  G  C  N  *  K  S  S  T  R  V  Y  A  G  C  T  R  V  Q  N  *  D  R  A  S  L  K  G  S  S  Q  E  R  R  W  P  C  W  L  L  F  R  S  S  *  T  D  A  C  V  R  V  H  S  *  W  H  L  K  R  R  S  F  R :   Q  D  W  H  Q  V  R  L  D  E  E  T  E  D  S  R  W  S  S  Q  R  F  A  V  F  A  *  P  C  Q  S  S  H  H  T  Q  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122254" stop="122184"/>
                    <exon start="122037" stop="121556"/>
                    <exon start="121390" stop="121232"/>
                    <exon start="121146" stop="121010"/>
                    <exon start="120836" stop="120617"/>
                    <exon start="120511" stop="120402"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLIDVQRNLIESFTQRPGYPFQIMLAGNPFCNEGGDGTQDYCVKTQQTETYSTPPENCLPTDCSSNRVSSPTCKCAFPYTGNIVFRAPSFSNLGNRTTYETLQKSLMQTFQNRQLPVESVSLSNPTKNLDDYLVIHLQVFPSTQDFFNRTGVSGIGFVLSNQTFKPPSSFGPFFFIGEGYKYFDGASSESKNSSSTGIIIGAAVGGSVIAIIALIIGVYAFRQKKRAEDAAKRSDPFASWDSNKHSGAVPQLTGARFFSFEELKKWTNNFSETNDIGCGGYGKVYRGTLPNGELVAIKRALQGSMQGAHEFKTEIELLSRVHHKNVVGLAGFCFDQAEQMLVYEYIPNGTLKDGLSGKTGIRLDWMRRLRIAVGAARGLQYLHDLVNPPIIHR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="125178" PGL_stop="123485"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125178" e_stop="125052"/>
            <exon e_start="124931" e_stop="124811"/>
            <exon e_start="124728" e_stop="124657"/>
            <exon e_start="124563" e_stop="124489"/>
            <exon e_start="124400" e_stop="124329"/>
            <exon e_start="123786" e_stop="123485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.912" acc_prob="0.548" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125178" e_stop="125052" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.912" acc_prob="0.548">
            <gDNA_intron_boundary i_start="125051" i_stop="124932" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="124931" e_stop="124811" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.886">
            <gDNA_intron_boundary i_start="124810" i_stop="124729" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124728" e_stop="124657" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.986">
            <gDNA_intron_boundary i_start="124656" i_stop="124564" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="124563" e_stop="124489" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.937" acc_prob="0.994">
            <gDNA_intron_boundary i_start="124488" i_stop="124401" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="124400" e_stop="124329" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.952">
            <gDNA_intron_boundary i_start="124328" i_stop="123787" i_length="542"/>
          </intron>
          <exon e_serial="6" e_score="0.960">
            <gDNA_exon_boundary e_start="123786" e_stop="123485" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125178" stop="125052"/>
              <exon start="124931" stop="124811"/>
              <exon start="124728" stop="124657"/>
              <exon start="124563" stop="124489"/>
              <exon start="124400" stop="124329"/>
              <exon start="123786" stop="123485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572562" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGAGTTTGTGAAGTTGATCACATATATGGTAGTTTCTCAGGCAATGATACCGCGAATTCTTCTCTGTTTTCTGTTTGTTTTGATCCATGTTCTGTCAATAGCAGCACGGACTAATCCTGATGATT : CTGCTGCTTTACAGTCTCTCAAGGATAGTTGGCAGAATGTTCCTCCCAATTGGGTTGGAGCAGATCCCTGTGGGAGTAGTTGGGACGGAATTGGATGCAGAAATTCACGAGTGGTTTCTAT : TACATTGTCAAGTATGAGTTTGGAAGGTCAGCTATCTGGGGATATCCAAGGATTAGCTGAATTGGAGACTTT : GGATCTATCATACAACAAGGAGTTGAAAGGATCTCTTCCTCAGTCTATTGGAAAATTGACAAAGCTATCAAATTT : GATCCTTGTTGGTTGTGGATTTTCGGGACCAATACCAGACACCATAGGATCTCTGACCCGGCTGGTTTTTCT : ATCTTTGAACTCTAACAACTTTATTGGAGGAATACCTGCTACCGTTGGCTATCTGACAGAGCTTTATTGGCTGGATTTAGCTGACAATAAGCTTACAGGAACAATTCCAGTCTCTAATGGGAGCAGTCCTGGTCTTGATTTGCTTGTTCACACTAAACACTTGTACGCTTCTCCTTTTTCTTGATATTGTTTTTGTCTCTCAACTGCATTTTCTAAGATTCTACATTTCTTCAGTCACTTTGGGAAGAATCAGCTATCCGGTGAAATTCCAGCTGGTCTTTTCCATTCTAATCTGTCCCTTA</gDNA_template>
            <first_frame> E  E  F  V  K  L  I  T  Y  M  V  V  S  Q  A  M  I  P  R  I  L  L  C  F  L  F  V  L  I  H  V  L  S  I  A  A  R  T  N  P  D  D   : S  A  A  L  Q  S  L  K  D  S  W  Q  N  V  P  P  N  W  V  G  A  D  P  C  G  S  S  W  D  G  I  G  C  R  N  S  R  V  V  S  I :   T  L  S  S  M  S  L  E  G  Q  L  S  G  D  I  Q  G  L  A  E  L  E  T  L :   D  L  S  Y  N  K  E  L  K  G  S  L  P  Q  S  I  G  K  L  T  K  L  S  N  L :   I  L  V  G  C  G  F  S  G  P  I  P  D  T  I  G  S  L  T  R  L  V  F  L :   S  L  N  S  N  N  F  I  G  G  I  P  A  T  V  G  Y  L  T  E  L  Y  W  L  D  L  A  D  N  K  L  T  G  T  I  P  V  S  N  G  S  S  P  G  L  D  L  L  V  H  T  K  H  L  Y  A  S  P  F  S  *  Y  C  F  C  L  S  T  A  F  S  K  I  L  H  F  F  S  H  F  G  K  N  Q  L  S  G  E  I  P  A  G  L  F  H  S  N  L  S  L  </first_frame>
            <second_frame>  R  S  L  *  S  *  S  H  I  W  *  F  L  R  Q  *  Y  R  E  F  F  S  V  F  C  L  F  *  S  M  F  C  Q  *  Q  H  G  L  I  L  M  I  :  L  L  L  Y  S  L  S  R  I  V  G  R  M  F  L  P  I  G  L  E  Q  I  P  V  G  V  V  G  T  E  L  D  A  E  I  H  E  W  F  L   : L  H  C  Q  V  *  V  W  K  V  S  Y  L  G  I  S  K  D  *  L  N  W  R  L   : W  I  Y  H  T  T  R  S  *  K  D  L  F  L  S  L  L  E  N  *  Q  S  Y  Q  I   : *  S  L  L  V  V  D  F  R  D  Q  Y  Q  T  P  *  D  L  *  P  G  W  F  F   : Y  L  *  T  L  T  T  L  L  E  E  Y  L  L  P  L  A  I  *  Q  S  F  I  G  W  I  *  L  T  I  S  L  Q  E  Q  F  Q  S  L  M  G  A  V  L  V  L  I  C  L  F  T  L  N  T  C  T  L  L  L  F  L  D  I  V  F  V  S  Q  L  H  F  L  R  F  Y  I  S  S  V  T  L  G  R  I  S  Y  P  V  K  F  Q  L  V  F  S  I  L  I  C  P  L </second_frame>
            <third_frame>   G  V  C  E  V  D  H  I  Y  G  S  F  S  G  N  D  T  A  N  S  S  L  F  S  V  C  F  D  P  C  S  V  N  S  S  T  D  *  S  *  *  F :   C  C  F  T  V  S  Q  G  *  L  A  E  C  S  S  Q  L  G  W  S  R  S  L  W  E  *  L  G  R  N  W  M  Q  K  F  T  S  G  F  Y  :  Y  I  V  K  Y  E  F  G  R  S  A  I  W  G  Y  P  R  I  S  *  I  G  D  F  :  G  S  I  I  Q  Q  G  V  E  R  I  S  S  S  V  Y  W  K  I  D  K  A  I  K  F  :  D  P  C  W  L  W  I  F  G  T  N  T  R  H  H  R  I  S  D  P  A  G  F  S  :  I  F  E  L  *  Q  L  Y  W  R  N  T  C  Y  R  W  L  S  D  R  A  L  L  A  G  F  S  *  Q  *  A  Y  R  N  N  S  S  L  *  W  E  Q  S  W  S  *  F  A  C  S  H  *  T  L  V  R  F  S  F  F  L  I  L  F  L  S  L  N  C  I  F  *  D  S  T  F  L  Q  S  L  W  E  E  S  A  I  R  *  N  S  S  W  S  F  P  F  *  S  V  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125178" stop="125052"/>
                    <exon start="124931" stop="124811"/>
                    <exon start="124728" stop="124657"/>
                    <exon start="124563" stop="124489"/>
                    <exon start="124400" stop="124329"/>
                    <exon start="123786" stop="123603"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEFVKLITYMVVSQAMIPRILLCFLFVLIHVLSIAARTNPDDSAALQSLKDSWQNVPPNWVGADPCGSSWDGIGCRNSRVVSITLSSMSLEGQLSGDIQGLAELETLDLSYNKELKGSLPQSIGKLTKLSNLILVGCGFSGPIPDTIGSLTRLVFLSLNSNNFIGGIPATVGYLTELYWLDLADNKLTGTIPVSNGSSPGLDLLVHTKHLYASPFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="135327" PGL_stop="134143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135327" e_stop="135261"/>
            <exon e_start="134938" e_stop="134143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.480" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135327" e_stop="135261" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.480">
            <gDNA_intron_boundary i_start="135260" i_stop="134939" i_length="322"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="134938" e_stop="134143" e_length="796"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135327" stop="135261"/>
              <exon start="134938" stop="134143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582578" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCCTATCAAAACTTTTGAGAGACGAAGACAAGGGCCATGTCACCACTCAAGTCAAAGGTACATTG : GGATATTTGGATCCTGAATATTACATGAGCCAACAGTTGACTGAGAAAAGTGATGTATATAGCTTTGGGGTGGTGCTGCTCGAGCTGATTACTGCAAGAGCTCCAATAGAACGAGGAAAACACATCGTGAGATTGGTTGCAGAGACCATATATGATTCAAAAGATAACAGCAAACTCTACCAATTAATTGATCCAAGAATAGGTCCAGGTTCAAAACTCGAAGGTGTTGATAGATTATTCACATTGGGAATGAGATGTGTAAATGAATCCGGGGCTGAGAGGCCTTCCATGGGAGAGGCTGTGAAAGAAATTGAGAGTATTCTTGGACTGGCCAGCTTGAGCAAGTATACTGAAGGCGACCTCACTTCGTCTAGCTACGAGGACACAACTCAAGTCAGTCTTGACGATTTTTATAATGACAAGGCTTTTGATTACAGTGGTAAATTCCCTTCTGGTGGCATGAACACCACTTATTGAAACTACCAACGACTATAAATTTGAGTTACATAAGTTTGTTATTATTGAGCATATGATGACTATGAATTACATTTCGTTTGATTGTTTATTACTAGTGATGCTTCTGCTCTAATACTAGCTATTTCAGAAGTCAGAATTACAAATGGCTTCTTCAGATTAAGTGATCTTCATATTGATGTTTGATCGATATAAAGTAAGATCATATACTGTACAGGACTACAGATGAGTTTTATAGCTCAAAACTCTAAACTGTAACAAATAAAGAATTTTCTTGTTACACTGCCCTTTGCAGCTATGTTAACAAGCACAACAAATTTAG</gDNA_template>
            <first_frame> W  P  I  K  T  F  E  R  R  R  Q  G  P  C  H  H  S  S  Q  R  Y  I   : G  I  F  G  S  *  I  L  H  E  P  T  V  D  *  E  K  *  C  I  *  L  W  G  G  A  A  R  A  D  Y  C  K  S  S  N  R  T  R  K  T  H  R  E  I  G  C  R  D  H  I  *  F  K  R  *  Q  Q  T  L  P  I  N  *  S  K  N  R  S  R  F  K  T  R  R  C  *  *  I  I  H  I  G  N  E  M  C  K  *  I  R  G  *  E  A  F  H  G  R  G  C  E  R  N  *  E  Y  S  W  T  G  Q  L  E  Q  V  Y  *  R  R  P  H  F  V  *  L  R  G  H  N  S  S  Q  S  *  R  F  L  *  *  Q  G  F  *  L  Q  W  *  I  P  F  W  W  H  E  H  H  L  L  K  L  P  T  T  I  N  L  S  Y  I  S  L  L  L  L  S  I  *  *  L  *  I  T  F  R  L  I  V  Y  Y  *  *  C  F  C  S  N  T  S  Y  F  R  S  Q  N  Y  K  W  L  L  Q  I  K  *  S  S  Y  *  C  L  I  D  I  K  *  D  H  I  L  Y  R  T  T  D  E  F  Y  S  S  K  L  *  T  V  T  N  K  E  F  S  C  Y  T  A  L  C  S  Y  V  N  K  H  N  K  F   </first_frame>
            <second_frame>  G  L  S  K  L  L  R  D  E  D  K  G  H  V  T  T  Q  V  K  G  T  L  :  G  Y  L  D  P  E  Y  Y  M  S  Q  Q  L  T  E  K  S  D  V  Y  S  F  G  V  V  L  L  E  L  I  T  A  R  A  P  I  E  R  G  K  H  I  V  R  L  V  A  E  T  I  Y  D  S  K  D  N  S  K  L  Y  Q  L  I  D  P  R  I  G  P  G  S  K  L  E  G  V  D  R  L  F  T  L  G  M  R  C  V  N  E  S  G  A  E  R  P  S  M  G  E  A  V  K  E  I  E  S  I  L  G  L  A  S  L  S  K  Y  T  E  G  D  L  T  S  S  S  Y  E  D  T  T  Q  V  S  L  D  D  F  Y  N  D  K  A  F  D  Y  S  G  K  F  P  S  G  G  M  N  T  T  Y  *  N  Y  Q  R  L  *  I  *  V  T  *  V  C  Y  Y  *  A  Y  D  D  Y  E  L  H  F  V  *  L  F  I  T  S  D  A  S  A  L  I  L  A  I  S  E  V  R  I  T  N  G  F  F  R  L  S  D  L  H  I  D  V  *  S  I  *  S  K  I  I  Y  C  T  G  L  Q  M  S  F  I  A  Q  N  S  K  L  *  Q  I  K  N  F  L  V  T  L  P  F  A  A  M  L  T  S  T  T  N  L  </second_frame>
            <third_frame>   A  Y  Q  N  F  *  E  T  K  T  R  A  M  S  P  L  K  S  K  V  H  W :   D  I  W  I  L  N  I  T  *  A  N  S  *  L  R  K  V  M  Y  I  A  L  G  W  C  C  S  S  *  L  L  Q  E  L  Q  *  N  E  E  N  T  S  *  D  W  L  Q  R  P  Y  M  I  Q  K  I  T  A  N  S  T  N  *  L  I  Q  E  *  V  Q  V  Q  N  S  K  V  L  I  D  Y  S  H  W  E  *  D  V  *  M  N  P  G  L  R  G  L  P  W  E  R  L  *  K  K  L  R  V  F  L  D  W  P  A  *  A  S  I  L  K  A  T  S  L  R  L  A  T  R  T  Q  L  K  S  V  L  T  I  F  I  M  T  R  L  L  I  T  V  V  N  S  L  L  V  A  *  T  P  L  I  E  T  T  N  D  Y  K  F  E  L  H  K  F  V  I  I  E  H  M  M  T  M  N  Y  I  S  F  D  C  L  L  L  V  M  L  L  L  *  Y  *  L  F  Q  K  S  E  L  Q  M  A  S  S  D  *  V  I  F  I  L  M  F  D  R  Y  K  V  R  S  Y  T  V  Q  D  Y  R  *  V  L  *  L  K  T  L  N  C  N  K  *  R  I  F  L  L  H  C  P  L  Q  L  C  *  Q  A  Q  Q  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135326" stop="135261"/>
                    <exon start="134938" stop="134462"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLSKLLRDEDKGHVTTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVVLLELITARAPIERGKHIVRLVAETIYDSKDNSKLYQLIDPRIGPGSKLEGVDRLFTLGMRCVNESGAERPSMGEAVKEIESILGLASLSKYTEGDLTSSSYEDTTQVSLDDFYNDKAFDYSGKFPSGGMNTTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="143999" PGL_stop="141929"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143999" e_stop="143740"/>
            <exon e_start="142730" e_stop="142610"/>
            <exon e_start="142521" e_stop="142450"/>
            <exon e_start="142003" e_stop="141929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.793" e_score="1.000"/>
          <exon-intron don_prob="0.651" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.859" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="143999" e_stop="143740" e_length="260"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.793">
            <gDNA_intron_boundary i_start="143739" i_stop="142731" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="142730" e_stop="142610" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.651" acc_prob="0.962">
            <gDNA_intron_boundary i_start="142609" i_stop="142522" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="142521" e_stop="142450" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.859" acc_prob="0.993">
            <gDNA_intron_boundary i_start="142449" i_stop="142004" i_length="446"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="142003" e_stop="141929" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143999" stop="143740"/>
              <exon start="142730" stop="142610"/>
              <exon start="142521" stop="142450"/>
              <exon start="142003" stop="141929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604736" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAACAGGTTTTCTTGTACTCATTCTTTTGTCCATGCAGCGTGAAGGTAAAGGATAACTTGCTGGATATTAGGAAGGCGTTATTTACAAGACTTGCACTGGAATATAGTAGTTTTTCTTTTCAAACAAAAGGTTGGGGTTTTGGATGTTCAAGAAAAAGGTTTTGCTATGCTGGAAATGGGTTCAAGAAGTCATGTCTTCCTCCTGATTTTTGTATCCCAAATTCTGGCTATACTGGGACAAACAAACAGCAATGATG : CCACTGCTCTATTTGCTCTTAAGTCTAGTTGGAATAACTTGCCACCAAATTGGGAGGGGTCAGATCCTTGTGGTAGCAGCTGGGCAGGACTTATCTGTGACAACTCACGTGTAACCTCAAT : AAAGTTATCAGGCATGGGCTTGGAAGGCAATCAGTTTGGAGATCTTTCATCATTAGCTGCATTGCAAATTTT : GGACCTCTCAAATAATGTTGGTTTGAAAGGGACTCTCCCACCATCAATTGGAAATTTGAAGAATTTGACAACCTT</gDNA_template>
            <first_frame> F  Q  Q  V  F  L  Y  S  F  F  C  P  C  S  V  K  V  K  D  N  L  L  D  I  R  K  A  L  F  T  R  L  A  L  E  Y  S  S  F  S  F  Q  T  K  G  W  G  F  G  C  S  R  K  R  F  C  Y  A  G  N  G  F  K  K  S  C  L  P  P  D  F  C  I  P  N  S  G  Y  T  G  T  N  K  Q  Q  *  C :   H  C  S  I  C  S  *  V  *  L  E  *  L  A  T  K  L  G  G  V  R  S  L  W  *  Q  L  G  R  T  Y  L  *  Q  L  T  C  N  L  N  :  K  V  I  R  H  G  L  G  R  Q  S  V  W  R  S  F  I  I  S  C  I  A  N  F  :  G  P  L  K  *  C  W  F  E  R  D  S  P  T  I  N  W  K  F  E  E  F  D  N  L </first_frame>
            <second_frame>  F  N  R  F  S  C  T  H  S  F  V  H  A  A  *  R  *  R  I  T  C  W  I  L  G  R  R  Y  L  Q  D  L  H  W  N  I  V  V  F  L  F  K  Q  K  V  G  V  L  D  V  Q  E  K  G  F  A  M  L  E  M  G  S  R  S  H  V  F  L  L  I  F  V  S  Q  I  L  A  I  L  G  Q  T  N  S  N  D   : A  T  A  L  F  A  L  K  S  S  W  N  N  L  P  P  N  W  E  G  S  D  P  C  G  S  S  W  A  G  L  I  C  D  N  S  R  V  T  S  I :   K  L  S  G  M  G  L  E  G  N  Q  F  G  D  L  S  S  L  A  A  L  Q  I  L :   D  L  S  N  N  V  G  L  K  G  T  L  P  P  S  I  G  N  L  K  N  L  T  T   </second_frame>
            <third_frame>   S  T  G  F  L  V  L  I  L  L  S  M  Q  R  E  G  K  G  *  L  A  G  Y  *  E  G  V  I  Y  K  T  C  T  G  I  *  *  F  F  F  S  N  K  R  L  G  F  W  M  F  K  K  K  V  L  L  C  W  K  W  V  Q  E  V  M  S  S  S  *  F  L  Y  P  K  F  W  L  Y  W  D  K  Q  T  A  M  M  :  P  L  L  Y  L  L  L  S  L  V  G  I  T  C  H  Q  I  G  R  G  Q  I  L  V  V  A  A  G  Q  D  L  S  V  T  T  H  V  *  P  Q   : *  S  Y  Q  A  W  A  W  K  A  I  S  L  E  I  F  H  H  *  L  H  C  K  F   : W  T  S  Q  I  M  L  V  *  K  G  L  S  H  H  Q  L  E  I  *  R  I  *  Q  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143947" stop="143740"/>
                    <exon start="142730" stop="142610"/>
                    <exon start="142521" stop="142450"/>
                    <exon start="142003" stop="141931"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RITCWILGRRYLQDLHWNIVVFLFKQKVGVLDVQEKGFAMLEMGSRSHVFLLIFVSQILAILGQTNSNDATALFALKSSWNNLPPNWEGSDPCGSSWAGLICDNSRVTSIKLSGMGLEGNQFGDLSSLAALQILDLSNNVGLKGTLPPSIGNLKNLTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 55 chains have been computed
$ 
$ memory statistics:
$ 71536 bytes spliced alignments in total
$ 28 spliced alignments have been stored
$ 2554 bytes was the average size of a spliced alignment
$ 31192 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1485 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 60 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:20:24
-->
