<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:16:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481495" ref_strand="+" ref_description="SGN-E481495 [cSTD-18-K20]">
      <seq>gacggatcacatgatgataatgttattgcaatttgtgggatgagcggaattgggaagacaactgttgccaaatatgttttcactacaaactttagaaaatttgaaggtagtagctttcttgcaaatatccaagatatttctcagcaaccagatggcttaattcgcttacaaaagcagctcctttatgacttaactgggaaaaagagtaaaatacaagatactaatgaaggaatcatcaagataagagatgctatatgttttaaaagagttctagtcatattggatgacattgatcaacaagaacaaattcatgctataattggaatgaaaaattggttttgtccaggtagtaaaataatcataacaactaagaattcatgtttgctgaaggttcaagaaattcaaaaagtccataaagtcagggaaatgggtaatgatgaatcactagagcttttcagttggcattcctttggggaggaccacccagctgatgactacatggaactatcaaaaagggtggtaaagcattgtggagggcttcctctggcgcttcaagttttgggttcttcacttcgtgggaaaaatatcgatgtatggaagagtgcattagacaagttggaagcgattcctgcgacccaggtcattaaaaaactaaaatttgggtatgactcgttaaaagatgatcatgataagaatttgttccttgacattgcctgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="2145" stop="3464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2445" g_stop="3164" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E481495" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2445" e_stop="3164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGATCACATGATGATAATCTTATTGCAATTTGCGGGATGAGCGGAATCGGGAAGACAACTGTTGCCAAATATGTTTTCACTACAAACTTTAGAAGATTTGAAGGTAGTAGTTTTCTTGCAAATATCCAAGATATTTCTCAGCAAAATGATGGCTTAATTCGCTTACAAAAGCAGCTCCTTTATGATTTAACTGGGAAAAAGAGTAAAATACAAGATACTGATGAAGGGATCATCAAGATAAGAGATGCTATATGTTTTAAAAGAGTTCTAGTCATATTGGATGACATTGATCAAATAGAACAAATTCATGCTATAATTGGAATGAAAAATTGGTTCTGTCCAGGAAGTAAAATAATCATAACAACTAAGAATTCATGTTTGCTGAAGGTTGAAGAAATTCAAAAAGTCCATAAAGTCAGGGAAATGGGTAATGATGAATCACTGGAGCTTTTCAGTTGGCATTCCTTTGGGGAGGACCACCCAGCTGATGACTACATGGAACTATCAAAAAGGGTGGTAAAGCATTGTGGAGGGCTTCCTCTGGCACTTCAAGTTTTGGGTTCTTCTCTTTGTGGGAGAAGTATCGATGTATGGAAGAGTGCATTAGACAAGTTGGAAGCGATTCCTGCAAGTCAGGTCATTAAAAAACTAAAATTTGGGTATGACTCATTAAAAGATGATCATGATAAGAATTTGTTCCTTGACATTGCCTGCTTC</genome_strand>
        <mrna_strand>GACGGATCACATGATGATAATGTTATTGCAATTTGTGGGATGAGCGGAATTGGGAAGACAACTGTTGCCAAATATGTTTTCACTACAAACTTTAGAAAATTTGAAGGTAGTAGCTTTCTTGCAAATATCCAAGATATTTCTCAGCAACCAGATGGCTTAATTCGCTTACAAAAGCAGCTCCTTTATGACTTAACTGGGAAAAAGAGTAAAATACAAGATACTAATGAAGGAATCATCAAGATAAGAGATGCTATATGTTTTAAAAGAGTTCTAGTCATATTGGATGACATTGATCAACAAGAACAAATTCATGCTATAATTGGAATGAAAAATTGGTTTTGTCCAGGTAGTAAAATAATCATAACAACTAAGAATTCATGTTTGCTGAAGGTTCAAGAAATTCAAAAAGTCCATAAAGTCAGGGAAATGGGTAATGATGAATCACTAGAGCTTTTCAGTTGGCATTCCTTTGGGGAGGACCACCCAGCTGATGACTACATGGAACTATCAAAAAGGGTGGTAAAGCATTGTGGAGGGCTTCCTCTGGCGCTTCAAGTTTTGGGTTCTTCACTTCGTGGGAAAAATATCGATGTATGGAAGAGTGCATTAGACAAGTTGGAAGCGATTCCTGCGACCCAGGTCATTAAAAAACTAAAATTTGGGTATGACTCGTTAAAAGATGATCATGATAAGAATTTGTTCCTTGACATTGCCTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428950" ref_strand="+" ref_description="SGN-E428950 [STM-51-M23]">
      <seq>gacggatcacatgatgataatgttattgcaatttgtgggatgagcggaattgggaagacaactgttgccaaatatgttttcactacaaactttagaaaatttgaaggtagtagctttcttgcaaatatccaagatatttctcagcaaccagatggcttaattcgcttacaaaagcagctcctttatgacttaactgggaaaaagagtaaaatacaagatactaatgaaggaatcatcaagataagagatgctatatgttttaaaagagttctagtcatattggatgacattgatcaacaagaacaaattcatgctataattggaatgaaaaattggttttgtccaggtagtaaaataatcataacaactaagaattcatgtttgctgaaggttcaagaaattcaaaaagtccataaagtcagggaaatgggtaatgatgaatcactagagcttttcagttggcattcctttggggaggaccacccagctgatgactacatggaactatcaaaaagggtggtaaagcattgtggagggcttcctctggcgcttcaagttttgggttcttcacttcgtgggaaaaatatcgatgtatggaagagtgcattnnagacagtggaagcgattcctgcgancccagtcattaaaaactaaaatttgggtatgactcgttaaaagatgatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="2145" stop="3432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2445" g_stop="3132" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E428950" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2445" e_stop="3132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGATCACATGATGATAATCTTATTGCAATTTGCGGGATGAGCGGAATCGGGAAGACAACTGTTGCCAAATATGTTTTCACTACAAACTTTAGAAGATTTGAAGGTAGTAGTTTTCTTGCAAATATCCAAGATATTTCTCAGCAAAATGATGGCTTAATTCGCTTACAAAAGCAGCTCCTTTATGATTTAACTGGGAAAAAGAGTAAAATACAAGATACTGATGAAGGGATCATCAAGATAAGAGATGCTATATGTTTTAAAAGAGTTCTAGTCATATTGGATGACATTGATCAAATAGAACAAATTCATGCTATAATTGGAATGAAAAATTGGTTCTGTCCAGGAAGTAAAATAATCATAACAACTAAGAATTCATGTTTGCTGAAGGTTGAAGAAATTCAAAAAGTCCATAAAGTCAGGGAAATGGGTAATGATGAATCACTGGAGCTTTTCAGTTGGCATTCCTTTGGGGAGGACCACCCAGCTGATGACTACATGGAACTATCAAAAAGGGTGGTAAAGCATTGTGGAGGGCTTCCTCTGGCACTTCAAGTTTTGGGTTCTTCTCTTTGTGGGAGAAGTATCGATGTATGGAAGAGTGCATTAGACAAGTTGGAAGCGATTCCTGCAAGTCAGGTCATTAAAAAACTAAAATTTGGGTATGACTCATTAAAAGATGATCATG</genome_strand>
        <mrna_strand>GACGGATCACATGATGATAATGTTATTGCAATTTGTGGGATGAGCGGAATTGGGAAGACAACTGTTGCCAAATATGTTTTCACTACAAACTTTAGAAAATTTGAAGGTAGTAGCTTTCTTGCAAATATCCAAGATATTTCTCAGCAACCAGATGGCTTAATTCGCTTACAAAAGCAGCTCCTTTATGACTTAACTGGGAAAAAGAGTAAAATACAAGATACTAATGAAGGAATCATCAAGATAAGAGATGCTATATGTTTTAAAAGAGTTCTAGTCATATTGGATGACATTGATCAACAAGAACAAATTCATGCTATAATTGGAATGAAAAATTGGTTTTGTCCAGGTAGTAAAATAATCATAACAACTAAGAATTCATGTTTGCTGAAGGTTCAAGAAATTCAAAAAGTCCATAAAGTCAGGGAAATGGGTAATGATGAATCACTAGAGCTTTTCAGTTGGCATTCCTTTGGGGAGGACCACCCAGCTGATGACTACATGGAACTATCAAAAAGGGTGGTAAAGCATTGTGGAGGGCTTCCTCTGGCGCTTCAAGTTTTGGGTTCTTCACTTCGTGGGAAAAATATCGATGTATGGAAGAGTGCATTNNAGACAGTGGAAGCGATTCCTGCGANCCCAGTCATT-AAAAACTAAAATTTGGGTATGACTCGTTAAAAGATGATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442910" ref_strand="+" ref_description="SGN-E442910 [cSTA-35-O12]">
      <seq>agcttgtggaggatgcaatccttggaagtgtttcttgccaatgaaatcccaatgagtcaattaccctgtaagagaaaacagaacccaatatggcatgcccttatccagtcttgggttccgaatccgaaaaaagttctagaccttccatgggtttctttaccaaagtctttggttaaaataagtctatctgggtgcaacctatctgaagttgattttccgagggacttcagtaatttaatgtcgttgcagaacctagacctcagtaaaaatccaatcagttgtcttccagattgcatcagaactctttccaggctcaataatcttaaattagcttcttgtacaatgcttaaatttctcatagacctacctcgtgtccacaatttggggctgggatattgcacttccctagaaagggtaacatatctatcagtagggtgtcaggcaaaagttcactatttaaatggctgtaaagaactcactgatatggagggaagattcaagttggaaaccatgggaggaattgagaaaacaatgaagttattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="3962" stop="5106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4262" g_stop="4806" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E442910" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4262" e_stop="4806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGTGGAGGATGCAATCCTTGGAAGTGTTTCTTGCAAATGAAATTCCAATGTGTCAATTACCCTCTAAGAGAAAACAGAACTCAATATGGCATGCACTTATCCAGTCTTGGCTTCCGAAGCCGAGAAAAGTTCTAGATCTTCCATGGGTTTCTTTACCAAAATCTTTGGTTAATTTAAGTCTATCTGGGTGCAATCTATCTGACGTTGCTTTTCCAAGGGATTTCAGTAATTTAATGTTGTTGCAGAACCTAGACCTCAGTAAAAATCCAATCAGTTGTCTTCCAGATTGCGTCAGAACTCTGTCCAGGCTCAACAGTCTTGAATTAGGTTCTTGTACAATGCTTAAATTACTCATAGACCTACCTCGCATCCACAATTTGAGGTTGGGACACTGCACTTCCCTAGAAAGAGTAACATATCTATCAGAAGTGTGCCGTGCAGTAGTTTACCATTTAAATGGCTGTAAAGCACTCACTGATATGGAGGGAAACTTCAAGTTGGAAGCCATGGGAGGAATTGAGATAGAAAAGAAGTCATTGGA</genome_strand>
        <mrna_strand>AGCTTGTGGAGGATGCAATCCTTGGAAGTGTTTCTTGCCAATGAAATCCCAATGAGTCAATTACCCTGTAAGAGAAAACAGAACCCAATATGGCATGCCCTTATCCAGTCTTGGGTTCCGAATCCGAAAAAAGTTCTAGACCTTCCATGGGTTTCTTTACCAAAGTCTTTGGTTAAAATAAGTCTATCTGGGTGCAACCTATCTGAAGTTGATTTTCCGAGGGACTTCAGTAATTTAATGTCGTTGCAGAACCTAGACCTCAGTAAAAATCCAATCAGTTGTCTTCCAGATTGCATCAGAACTCTTTCCAGGCTCAATAATCTTAAATTAGCTTCTTGTACAATGCTTAAATTTCTCATAGACCTACCTCGTGTCCACAATTTGGGGCTGGGATATTGCACTTCCCTAGAAAGGGTAACATATCTATCAGTAGGGTGTCAGGCAAAAGTTCACTATTTAAATGGCTGTAAAGAACTCACTGATATGGAGGGAAGATTCAAGTTGGAAACCATGGGAGGAATTGAGAAAACAATGAAGTTATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418805" ref_strand="+" ref_description="SGN-E418805 [STM-28-K12]">
      <seq>cttgtggaggatgcaatccttggaagtgtttcttgccaatgaaatcccaatgagtcaattaccctgtaagagaaaacagaacccaatatggcatgcccttatccagtcttgggttccgaatccgaaaaaagttctagaccttccatgggtttctttaccaaagtctttggttaaaataagtctatctgggtgcaacctatctgaagttgattttccgagggacttcagtaatttaatgtcgttgcagaacctagacctcagtaaaaatccaatcagttgtcttccagattgcatcagaactctttccaggctcaataatcttaaattagcttcttgtacaatgcttaaatttctcatagacctacctcgtgtccacaatttggggctgggatattgcacttccctagaaagggtaacatatctatctgtagggtgtcaggcaaaagttcactatttaaatggctgtaaagaactcactgatatggagggaagattcaagttggaaaccatgggaggaattgagaaaacaatgaagttattggaattaagcaagtgggattctgtcagaagctttgaagtgaaattgcgtaacaatctaactcatacagaaagtagaggaccagtaaaggtgtgttttgaaaggggattgatcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="3964" stop="5193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4264" g_stop="4891" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4892" i_stop="5032" i_length="141">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5033" g_stop="5060" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="656" r_length="28" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E418805" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4264" e_stop="4891"/>
          <exon e_start="5033" e_stop="5060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGGAGGATGCAATCCTTGGAAGTGTTTCTTGCAAATGAAATTCCAATGTGTCAATTACCCTCTAAGAGAAAACAGAACTCAATATGGCATGCACTTATCCAGTCTTGGCTTCCGAAGCCGAGAAAAGTTCTAGATCTTCCATGGGTTTCTTTACCAAAATCTTTGGTTAATTTAAGTCTATCTGGGTGCAATCTATCTGACGTTGCTTTTCCAAGGGATTTCAGTAATTTAATGTTGTTGCAGAACCTAGACCTCAGTAAAAATCCAATCAGTTGTCTTCCAGATTGCGTCAGAACTCTGTCCAGGCTCAACAGTCTTGAATTAGGTTCTTGTACAATGCTTAAATTACTCATAGACCTACCTCGCATCCACAATTTGAGGTTGGGACACTGCACTTCCCTAGAAAGAGTAACATATCTATCAGAAGTGTGCCGTGCAGTAGTTTACCATTTAAATGGCTGTAAAGCACTCACTGATATGGAGGGAAACTTCAAGTTGGAAGCCATGGGAGGAATTGAGATAGAAAAGAAGTCATTGGAATTAAGCATGTGGGATTCTGTCGGAAGCTCCGAAGTGAAATTGTATAACAATTCAACTAATACAGAAAGTAGAGGACCAGTAAAGGTACTTTCTCCTCTTCCATTCCCCCACCCCACTCCCAAAGAAGGTGATGACGGATCTATTCTTCATGTAACAGTTGTATCGGTTGGTTCCTTTATTTGTTTTTTTTTTCTATCATATTTGATGAGATTCTTCATGACACAGGTGTTGTTTGAAAGGGGGATGATCAGCA</genome_strand>
        <mrna_strand>CTTGTGGAGGATGCAATCCTTGGAAGTGTTTCTTGCCAATGAAATCCCAATGAGTCAATTACCCTGTAAGAGAAAACAGAACCCAATATGGCATGCCCTTATCCAGTCTTGGGTTCCGAATCCGAAAAAAGTTCTAGACCTTCCATGGGTTTCTTTACCAAAGTCTTTGGTTAAAATAAGTCTATCTGGGTGCAACCTATCTGAAGTTGATTTTCCGAGGGACTTCAGTAATTTAATGTCGTTGCAGAACCTAGACCTCAGTAAAAATCCAATCAGTTGTCTTCCAGATTGCATCAGAACTCTTTCCAGGCTCAATAATCTTAAATTAGCTTCTTGTACAATGCTTAAATTTCTCATAGACCTACCTCGTGTCCACAATTTGGGGCTGGGATATTGCACTTCCCTAGAAAGGGTAACATATCTATCTGTAGGGTGTCAGGCAAAAGTTCACTATTTAAATGGCTGTAAAGAACTCACTGATATGGAGGGAAGATTCAAGTTGGAAACCATGGGAGGAATTGAGAAAACAATGAAGTTATTGGAATTAAGCAAGTGGGATTCTGTCAGAAGCTTTGAAGTGAAATTGCGTAACAATCTAACTCATACAGAAAGTAGAGGACCAGTAAAG.............................................................................................................................................GTGTGTTTTGAAAGGGGATTGATCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542642" ref_strand="+" ref_description="SGN-E542642 [TUS-64-A19]">
      <seq>gcttccgaagccgagaaaagttctagatcttccatgggtttctttaccaaaatctttggttaatttaagtctatctgggtgcaatctatctgacgttgcttttccaagggatttcagtaatttaatgttgttgcagaacctagacctcagtaaaaatccaatcagttgtcttccagattgcgtcagaactctgtccaggctcaacagtcttgaattaggttcttgtacaatgcttaaattactcatagacctacctcgcatccacaatttgaggttgggacactgcacttccctagaaagagtaacatatctatcagaagtgtgccgtgcagtagtttaccatttaaatggctgtaaagcactcactgatatggagggaaacttcaagttggaagccatgggaggaattgagatagaaaagaagtcattggaattaagcatgtgggattctgtcggaagctccgaagtgaaattgtataacaattcaactaatacagaaagtagaggaccagtaaaggtgttgtttgaaagggggatgatcagcatatatcttccggggagcaaggttcctaattggttttgttacaagagtgctggagcaactctatctttcgctgtcccttcacctcctgatctcaagatccagggcataactgtgtgctcagtgtacacaattgactggaaagtctggattgcgggtatcgaattttatttgataatccataatgagcagaagaatgtgaagctgatttatagcccgacttgctatggtcttcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="4075" stop="5595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4375" g_stop="4891" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4892" i_stop="5032" i_length="141">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5033" g_stop="5295" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="780" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E542642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4375" e_stop="4891"/>
          <exon e_start="5033" e_stop="5295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCGAAGCCGAGAAAAGTTCTAGATCTTCCATGGGTTTCTTTACCAAAATCTTTGGTTAATTTAAGTCTATCTGGGTGCAATCTATCTGACGTTGCTTTTCCAAGGGATTTCAGTAATTTAATGTTGTTGCAGAACCTAGACCTCAGTAAAAATCCAATCAGTTGTCTTCCAGATTGCGTCAGAACTCTGTCCAGGCTCAACAGTCTTGAATTAGGTTCTTGTACAATGCTTAAATTACTCATAGACCTACCTCGCATCCACAATTTGAGGTTGGGACACTGCACTTCCCTAGAAAGAGTAACATATCTATCAGAAGTGTGCCGTGCAGTAGTTTACCATTTAAATGGCTGTAAAGCACTCACTGATATGGAGGGAAACTTCAAGTTGGAAGCCATGGGAGGAATTGAGATAGAAAAGAAGTCATTGGAATTAAGCATGTGGGATTCTGTCGGAAGCTCCGAAGTGAAATTGTATAACAATTCAACTAATACAGAAAGTAGAGGACCAGTAAAGGTACTTTCTCCTCTTCCATTCCCCCACCCCACTCCCAAAGAAGGTGATGACGGATCTATTCTTCATGTAACAGTTGTATCGGTTGGTTCCTTTATTTGTTTTTTTTTTCTATCATATTTGATGAGATTCTTCATGACACAGGTGTTGTTTGAAAGGGGGATGATCAGCATATATCTTCCGGGGAGCAAGGTTCCTAATTGGTTTTGTTACAAGAGTGCTGGAGCAACTCTATCTTTCGCTGTCCCTTCACCTCCTGATCTCAAGATCCAGGGCATAACTGTGTGCTCAGTGTACACAATTGACTGGAAAGTCTGGATTGCGGGTATCGAATTTTATTTGATAATCCATAATGAGCAGAAGAATGTGAAGCTGATTTATAGCCCGACTTGCTATGGTCTTCCTGA</genome_strand>
        <mrna_strand>GCTTCCGAAGCCGAGAAAAGTTCTAGATCTTCCATGGGTTTCTTTACCAAAATCTTTGGTTAATTTAAGTCTATCTGGGTGCAATCTATCTGACGTTGCTTTTCCAAGGGATTTCAGTAATTTAATGTTGTTGCAGAACCTAGACCTCAGTAAAAATCCAATCAGTTGTCTTCCAGATTGCGTCAGAACTCTGTCCAGGCTCAACAGTCTTGAATTAGGTTCTTGTACAATGCTTAAATTACTCATAGACCTACCTCGCATCCACAATTTGAGGTTGGGACACTGCACTTCCCTAGAAAGAGTAACATATCTATCAGAAGTGTGCCGTGCAGTAGTTTACCATTTAAATGGCTGTAAAGCACTCACTGATATGGAGGGAAACTTCAAGTTGGAAGCCATGGGAGGAATTGAGATAGAAAAGAAGTCATTGGAATTAAGCATGTGGGATTCTGTCGGAAGCTCCGAAGTGAAATTGTATAACAATTCAACTAATACAGAAAGTAGAGGACCAGTAAAG.............................................................................................................................................GTGTTGTTTGAAAGGGGGATGATCAGCATATATCTTCCGGGGAGCAAGGTTCCTAATTGGTTTTGTTACAAGAGTGCTGGAGCAACTCTATCTTTCGCTGTCCCTTCACCTCCTGATCTCAAGATCCAGGGCATAACTGTGTGCTCAGTGTACACAATTGACTGGAAAGTCTGGATTGCGGGTATCGAATTTTATTTGATAATCCATAATGAGCAGAAGAATGTGAAGCTGATTTATAGCCCGACTTGCTATGGTCTTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301667" ref_strand="+" ref_description="SGN-E301667 [cLEW-23-D19]">
      <seq>cttccgaagccgagaaaagttctagggcttccatgggtttctttaccaaaatctttggttaatttaagtctatctgggtgcaatctatctgacgttgcttttccaagggatttcagtaatttaatgttgttgcagaacctagacctcagtaaaaatccaatcagttgtctttcagattgcgtcagaactctgtccaggctcaacagtcttgaattaggttcttgtacaatgcttaaattactcatagacctacctcgcatccacaatttgaggttgggacactgcacttccctagaaagagtaacatatctatcaaaagtgtgccgtgcagtagtttaccatttaaatggctgtaaagcactcactgatatggagggaaacttcaagttggaagccatgggaggaattgagatagaaaagaagtcattggaattaagcatgttggattctgtcggaagctccgaagtgaaattgtataacaattcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="4076" stop="5163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4376" g_stop="4863" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E301667" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4376" e_stop="4863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCGAAGCCGAGAAAAGTTCTAGATCTTCCATGGGTTTCTTTACCAAAATCTTTGGTTAATTTAAGTCTATCTGGGTGCAATCTATCTGACGTTGCTTTTCCAAGGGATTTCAGTAATTTAATGTTGTTGCAGAACCTAGACCTCAGTAAAAATCCAATCAGTTGTCTTCCAGATTGCGTCAGAACTCTGTCCAGGCTCAACAGTCTTGAATTAGGTTCTTGTACAATGCTTAAATTACTCATAGACCTACCTCGCATCCACAATTTGAGGTTGGGACACTGCACTTCCCTAGAAAGAGTAACATATCTATCAGAAGTGTGCCGTGCAGTAGTTTACCATTTAAATGGCTGTAAAGCACTCACTGATATGGAGGGAAACTTCAAGTTGGAAGCCATGGGAGGAATTGAGATAGAAAAGAAGTCATTGGAATTAAGCATGTGGGATTCTGTCGGAAGCTCCGAAGTGAAATTGTATAACAATTCAAC</genome_strand>
        <mrna_strand>CTTCCGAAGCCGAGAAAAGTTCTAGGGCTTCCATGGGTTTCTTTACCAAAATCTTTGGTTAATTTAAGTCTATCTGGGTGCAATCTATCTGACGTTGCTTTTCCAAGGGATTTCAGTAATTTAATGTTGTTGCAGAACCTAGACCTCAGTAAAAATCCAATCAGTTGTCTTTCAGATTGCGTCAGAACTCTGTCCAGGCTCAACAGTCTTGAATTAGGTTCTTGTACAATGCTTAAATTACTCATAGACCTACCTCGCATCCACAATTTGAGGTTGGGACACTGCACTTCCCTAGAAAGAGTAACATATCTATCAAAAGTGTGCCGTGCAGTAGTTTACCATTTAAATGGCTGTAAAGCACTCACTGATATGGAGGGAAACTTCAAGTTGGAAGCCATGGGAGGAATTGAGATAGAAAAGAAGTCATTGGAATTAAGCATGTTGGATTCTGTCGGAAGCTCCGAAGTGAAATTGTATAACAATTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542641" ref_strand="+" ref_description="SGN-E542641 [TUS-64-A19](-)">
      <seq>tgcacttccctagaaagagtaacatatctatcagaagtgtgccgtgcagtagtttaccatttaaatggctgtaaagcactcactgatatggagggaaacttcaagttggaagccatgggaggaattgagatagaaaagaagtcattggaattaagcatgtgggattctgtcggaagctccgaagtgaaattgtataacaattcaactaatacagaaagtagaggaccagtaaaggtgttgtttgaaagggggatgatcagcatatatcttccggggagcaaggttcctaattggttttgttacaagagtgctggagcaactctatctttcgctgtcccttcacctcctgatctcaagatccagggcataactgtgtgctcagtgtacacaattgactggaaagtctggattgcgggtatcgaattttatttgataatccataatgagcagaagaatgtgaagctgatttatagcccgacttgctatggtcttcctgaagcccaaaacgaaatgttatggttcacccatttgatatttctgagtcagctggatgctggtgacaccttgaatgtctcagttgttactatggagggttttagcatcaaggaaatgggtattcacttgatgcatgatgagcaagtagacatgattttgaactcaaacagtcatgaaatgcagaaagattatccttatcaggggatgacgcctgccaaacgtcaagggcttgtagatttatactgttttggccatatcgggcctggattggactacattttgccantatataccttgagatccatgaatgggaattctttgaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="4358" stop="5919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4658" g_stop="4891" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4892" i_stop="5032" i_length="141">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5033" g_stop="5618" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="821" r_length="587" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E542641" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4658" e_stop="4891"/>
          <exon e_start="5033" e_stop="5618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTTCCCTAGAAAGAGTAACATATCTATCAGAAGTGTGCCGTGCAGTAGTTTACCATTTAAATGGCTGTAAAGCACTCACTGATATGGAGGGAAACTTCAAGTTGGAAGCCATGGGAGGAATTGAGATAGAAAAGAAGTCATTGGAATTAAGCATGTGGGATTCTGTCGGAAGCTCCGAAGTGAAATTGTATAACAATTCAACTAATACAGAAAGTAGAGGACCAGTAAAGGTACTTTCTCCTCTTCCATTCCCCCACCCCACTCCCAAAGAAGGTGATGACGGATCTATTCTTCATGTAACAGTTGTATCGGTTGGTTCCTTTATTTGTTTTTTTTTTCTATCATATTTGATGAGATTCTTCATGACACAGGTGTTGTTTGAAAGGGGGATGATCAGCATATATCTTCCGGGGAGCAAGGTTCCTAATTGGTTTTGTTACAAGAGTGCTGGAGCAACTCTATCTTTCGCTGTCCCTTCACCTCCTGATCTCAAGATCCAGGGCATAACTGTGTGCTCAGTGTACACAATTGACTGGAAAGTCTGGATTGCGGGTATCGAATTTTATTTGATAATCCATAATGAGCAGAAGAATGTGAAGCTGATTTATAGCCCGACTTGCTATGGTCTTCCTGAAGCCCAAAACGAAATGTTATGGTTCACCCATTTGATATTTCTGAGTCAGCTGGATGCTGGTGACACCTTGAATGTCTCAGTTGTTACTATGGAGGGTTTTAGCATCAAGGAAATGGGTATTCACTTGATGCATGATGAGCAAGTAGACATGATTTTGAACTCAAACAGTCATGAAATGCAGAAAGATTATCCTTATCAGGGGATGACGCCTGCCAAACGTCAAGGGCTTGTAGATTTATACTGTTTTGGCCATATCGGGCCTGGATTGGACTACATTTTGCCA-TATATACCTTGAGATCCATGAATGGGAATTCTTTGAAGAA</genome_strand>
        <mrna_strand>TGCACTTCCCTAGAAAGAGTAACATATCTATCAGAAGTGTGCCGTGCAGTAGTTTACCATTTAAATGGCTGTAAAGCACTCACTGATATGGAGGGAAACTTCAAGTTGGAAGCCATGGGAGGAATTGAGATAGAAAAGAAGTCATTGGAATTAAGCATGTGGGATTCTGTCGGAAGCTCCGAAGTGAAATTGTATAACAATTCAACTAATACAGAAAGTAGAGGACCAGTAAAG.............................................................................................................................................GTGTTGTTTGAAAGGGGGATGATCAGCATATATCTTCCGGGGAGCAAGGTTCCTAATTGGTTTTGTTACAAGAGTGCTGGAGCAACTCTATCTTTCGCTGTCCCTTCACCTCCTGATCTCAAGATCCAGGGCATAACTGTGTGCTCAGTGTACACAATTGACTGGAAAGTCTGGATTGCGGGTATCGAATTTTATTTGATAATCCATAATGAGCAGAAGAATGTGAAGCTGATTTATAGCCCGACTTGCTATGGTCTTCCTGAAGCCCAAAACGAAATGTTATGGTTCACCCATTTGATATTTCTGAGTCAGCTGGATGCTGGTGACACCTTGAATGTCTCAGTTGTTACTATGGAGGGTTTTAGCATCAAGGAAATGGGTATTCACTTGATGCATGATGAGCAAGTAGACATGATTTTGAACTCAAACAGTCATGAAATGCAGAAAGATTATCCTTATCAGGGGATGACGCCTGCCAAACGTCAAGGGCTTGTAGATTTATACTGTTTTGGCCATATCGGGCCTGGATTGGACTACATTTTGCCANTATATACCTTGAGATCCATGAATGGGAATTCTTTGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727442" ref_strand="+" ref_description="SGN-E727442 [LA14CG12]">
      <seq>gcagcctctctccccttgagagatgaatcttgctccaatctcattcaatgtctcatcttctacagttccaagtttccatatagcttcttcacattcacagtccttgtcgttgaggaggagtattactcctttagcaattgtatccagaaaagttattccagcgcgagaccgagtcatagattttggaaaatacaaaggtaaaatgctgggaacactcccatctaagtacctcaaatgggtgacaaagaatctccgagctcgagattttgaagaatgggctcagctagcagatcaagtcctctctgaccctatctatagggaccgaattgaatgggagtttgcccaaaatctcctcaacggcgacgtttcaccggcacggacgcagagttccgtttcggagttgctggaaatcagcaccagattccgttgggacaatgaggataagttgggttggagcaaaattgattttgagttacttgggacctctaaaggtggtcgaataccaaggctttctgattcccccaataattcaattagggttgaagataaaaaaaagggtacagatggagttgatagtagtcaggatgatggcgaaaaagacaatagggagagaagacgggaaaggataaagttacagaggagaccgaatgaatctggccaacgttcaactagtgttacacagagaagagcgaattctgatcatttcaatccactcaaatcagacccaattggcgccactaataataacactagtagcggcagaacggaaactccgagtcgttttcggggtcgtgaatccctgttgaaagaagcattgtccagaaaaatacctcaaattaatgaatttctgatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="16629" stop="15174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16329" g_stop="15474" g_length="856"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="856" r_length="856" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E727442" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16329" e_stop="15474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCTCTCTCCCCTTGAGAGATGAATCTTGCTCCAATCTCATTCAATGTCTCATCTTCTACAGTTCCAAGTTTCCATATAGCTTCTTCACATTCACAGTCCTTGTCGTTGAGGAGGAGTATTACTCCTTTAGCAATTGTATCCAGAAAAGTTATTCCAGCGCGAGACCGAGTCATAGATTTTGGAAAATACAAAGGTAAAATGCTGGGAACACTCCCATCTAAGTACCTCAAATGGGTGACAAAGAATCTCCGAGCTCGAGATTTTGAAGAATGGGCTCAGCTAGCAGATCAAGTCCTCTCTGACCCTATCTATAGGGACCGAATTGAATGGGAGTTTGCCCAAAATCTCCTCAACGGCGACGTTTCACCGGCACGGACGCAGAGTTCCGTTTCGGAGTTGCTGGAAATCAGCACCAGATTCCGTTGGGACAATGAGGATAAGTTGGGTTGGAGCAAAATTGATTTTGAGTTACTTGGGACCTCTAAAGGTGGTCGAATACCAAGGCTTTCTGATTCCCCCAATAATTCAATTAGGGTTGAAGAT-AAAAAAAGGGTACAGATGGAGTTGATAGTAGTCAGGATGATGGCGAAAAAGACAATAGGGAGAGAAGACGGGAAAGGATAAAGTTACAGAGGAGACCGAATGAATCTGGCCAACGTTCAACTAGTGTTACACAGAGAAGAGCGAATTCTGATCATTTCAATCCACTCAAATCAGACCCAATTGGCGCCACTAATAATAACACTAGTAGCGGCAGAACGGAAACTCCGAGTCGTTTTCCGGGTCGTGAATCCCTGTTGAAGAAAGCATTGTCCAGAAAAAATACCTCAAATTAATGAATTTCTGATACCT</genome_strand>
        <mrna_strand>GCAGCCTCTCTCCCCTTGAGAGATGAATCTTGCTCCAATCTCATTCAATGTCTCATCTTCTACAGTTCCAAGTTTCCATATAGCTTCTTCACATTCACAGTCCTTGTCGTTGAGGAGGAGTATTACTCCTTTAGCAATTGTATCCAGAAAAGTTATTCCAGCGCGAGACCGAGTCATAGATTTTGGAAAATACAAAGGTAAAATGCTGGGAACACTCCCATCTAAGTACCTCAAATGGGTGACAAAGAATCTCCGAGCTCGAGATTTTGAAGAATGGGCTCAGCTAGCAGATCAAGTCCTCTCTGACCCTATCTATAGGGACCGAATTGAATGGGAGTTTGCCCAAAATCTCCTCAACGGCGACGTTTCACCGGCACGGACGCAGAGTTCCGTTTCGGAGTTGCTGGAAATCAGCACCAGATTCCGTTGGGACAATGAGGATAAGTTGGGTTGGAGCAAAATTGATTTTGAGTTACTTGGGACCTCTAAAGGTGGTCGAATACCAAGGCTTTCTGATTCCCCCAATAATTCAATTAGGGTTGAAGATAAAAAAAAGGGTACAGATGGAGTTGATAGTAGTCAGGATGATGGCGAAAAAGACAATAGGGAGAGAAGACGGGAAAGGATAAAGTTACAGAGGAGACCGAATGAATCTGGCCAACGTTCAACTAGTGTTACACAGAGAAGAGCGAATTCTGATCATTTCAATCCACTCAAATCAGACCCAATTGGCGCCACTAATAATAACACTAGTAGCGGCAGAACGGAAACTCCGAGTCGTTTTCGGGGTCGTGAATCCCTGTTGAAAGAAGCATTGTCCAG-AAAAATACCTCAAATTAATGAATTTCTGATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310272" ref_strand="+" ref_description="SGN-E310272 [cTOA-1-E20]">
      <seq>ttcttcacattcacagtccttgtcgttgaggaggagtattactcctttagcaattgtatccagaaaagttattccagcgcgagaccgagtcatagattttggaaaatacaaaggtaaaatgctgggaacactcccatctaagtacctcaaatgggtgacaaagaatctccgagctcgagattttgaagaatgggctcagctagcagatcaagtcctctctgaccctatctatagggaccgaattgaatgggagtttgcccaaaatctcctcaacggcgacgtttcaccggcacggacgcagagttccgtttcggagttgctggaaatcagcaccagattccgttgggacaatgaggataagttgggttggagcaaaattgattttgagttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="16545" stop="15551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16245" g_stop="15851" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E310272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16245" e_stop="15851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCACATTCACAGTCCTTGTCGTTGAGGAGGAGTATTACTCCTTTAGCAATTGTATCCAGAAAAGTTATTCCAGCGCGAGACCGAGTCATAGATTTTGGAAAATACAAAGGTAAAATGCTGGGAACACTCCCATCTAAGTACCTCAAATGGGTGACAAAGAATCTCCGAGCTCGAGATTTTGAAGAATGGGCTCAGCTAGCAGATCAAGTCCTCTCTGACCCTATCTATAGGGACCGAATTGAATGGGAGTTTGCCCAAAATCTCCTCAACGGCGACGTTTCACCGGCACGGACGCAGAGTTCCGTTTCGGAGTTGCTGGAAATCAGCACCAGATTCCGTTGGGACAATGAGGATAAGTTGGGTTGGAGCAAAATTGATTTTGAGTTACTTG</genome_strand>
        <mrna_strand>TTCTTCACATTCACAGTCCTTGTCGTTGAGGAGGAGTATTACTCCTTTAGCAATTGTATCCAGAAAAGTTATTCCAGCGCGAGACCGAGTCATAGATTTTGGAAAATACAAAGGTAAAATGCTGGGAACACTCCCATCTAAGTACCTCAAATGGGTGACAAAGAATCTCCGAGCTCGAGATTTTGAAGAATGGGCTCAGCTAGCAGATCAAGTCCTCTCTGACCCTATCTATAGGGACCGAATTGAATGGGAGTTTGCCCAAAATCTCCTCAACGGCGACGTTTCACCGGCACGGACGCAGAGTTCCGTTTCGGAGTTGCTGGAAATCAGCACCAGATTCCGTTGGGACAATGAGGATAAGTTGGGTTGGAGCAAAATTGATTTTGAGTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213997" ref_strand="+" ref_description="SGN-E213997 [cLEC-80-F2]">
      <seq>aagaaattattcgtcgagaatcacaagatgatcccgagagattgttgtgcaaatggttgaaccaatgcggtctgtcacatgacttgacagaaaacagtggaactgatgcagatggagtagacctccaaggcacgcatctgccagaagatggtcttgtcccagcacttggtcctaatgctgcaaaaagaccatattatcaagattttccagaaatagctgttctgccatacctaggtaattcgttgaaaaggcgttttgttggacttctttcgacattccccttatctggtggcctcaaaagattcttcccatgatgagaaaagtacttgtgaagacgccttctttctttcggaaaaaccaacattttactacttaatcttgtggagctagaagatatacatgagtgttgtgtgaggcggcggggcttcaataaggatcattatctgataatatctgagcatttcttttgcttgacatactgtcttagttgcacaaatttgttagttgcagatgtatattctgtcctgttctttttcatcagcttcaggtgggcaatggtgtaaattatgttttattaactcattgtacagtcataggatcatttcttgctagctgcatagtttactttcagcaacagttcactggaaggaactaaaaatgtaatcttttaccattccntttttagtctctcaaaaaatatctggaagttttaccattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="24094" stop="22690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23794" g_stop="23697" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23696" i_stop="23608" i_length="89">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23607" g_stop="22990" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="718" r_length="620" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E213997" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23794" e_stop="23697"/>
          <exon e_start="23607" e_stop="22990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATTATTCGTCGAGAATCACAAGATGATCCCGAGAGATTGTTGTGCAAATGGTTGAACCAATGCGGTCTGTCACATGACTTGACAGAAAACAGTGTAAGAATTTTGACTTTTGCATTCATTTTAAGCTTGTCTTGGTAGATTCTCAAAGTGTTGTTGTTTCTCACAAAATCTTTCTGCAACAGGGAACTGATGCAGATGGAGTAGACCTCCAAGGCACGCATCTGCCAGAAGATGGTCTTGTCCCAGCACTTGGTCCTAATGCTGCAAAAAGACCATATTATCAAGATTTTCCAGAAATAGCTGTTCTGCCATACCTAGGTAATTCGTTGAAAAGGCGTTTTGTTGGACTTCTTTCGACATTCCCCTTATCTGGTGGCCTCAAAAGATTCTTCCCATGATGAGAAAAGTACTTGTGAAGACGCCTTCTTTCTTTCGGAAAAACCAACATTTTACTACTTAATCTTGTGGAGCTAGAAGATATACATGAGTGTTGTGTGAGGCGGCGGGGCTTCAATAAGGATCATTATCTGATAATATCTGAGCATTTCTTTTGCTTGACATACTGTCTTAGTTGCACAAATTTGTTAGTTGCAGATGTATATTCTGTCCTGTTCTTTTTCATCAGCTTCAGGTGGGCAATGGTGTAAATTATGTTTTATTAACTCATTGTACAGTCATAGGATCATTTCTTGCTAGCTGCATAGTTTAC-TTCAGCAAACAGTTCACTGGAAGGAACTAAAAATGTAATCTTTAACCATTCC-TTTTTAGTCTCTCAAAAAATATCT-GAAGTTTTACCATTC</genome_strand>
        <mrna_strand>AAGAAATTATTCGTCGAGAATCACAAGATGATCCCGAGAGATTGTTGTGCAAATGGTTGAACCAATGCGGTCTGTCACATGACTTGACAGAAAACAGT.........................................................................................GGAACTGATGCAGATGGAGTAGACCTCCAAGGCACGCATCTGCCAGAAGATGGTCTTGTCCCAGCACTTGGTCCTAATGCTGCAAAAAGACCATATTATCAAGATTTTCCAGAAATAGCTGTTCTGCCATACCTAGGTAATTCGTTGAAAAGGCGTTTTGTTGGACTTCTTTCGACATTCCCCTTATCTGGTGGCCTCAAAAGATTCTTCCCATGATGAGAAAAGTACTTGTGAAGACGCCTTCTTTCTTTCGGAAAAACCAACATTTTACTACTTAATCTTGTGGAGCTAGAAGATATACATGAGTGTTGTGTGAGGCGGCGGGGCTTCAATAAGGATCATTATCTGATAATATCTGAGCATTTCTTTTGCTTGACATACTGTCTTAGTTGCACAAATTTGTTAGTTGCAGATGTATATTCTGTCCTGTTCTTTTTCATCAGCTTCAGGTGGGCAATGGTGTAAATTATGTTTTATTAACTCATTGTACAGTCATAGGATCATTTCTTGCTAGCTGCATAGTTTACTTTCAGC-AACAGTTCACTGGAAGGAACTAAAAATGTAATCTTTTACCATTCCNTTTTTAGTCTCTCAAAAAATATCTGGAAGTTTTACCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374128" ref_strand="+" ref_description="SGN-E374128 [TUS-33-J3](-)">
      <seq>atcacaagatgatcccgagagattgttgtgcaaatggttgaaccaatgcggtctgtcacatgacttgacagaaaacagtggaactgatgcagatggagtagacctccaaggcacgcatctgccagaagatggtcttgtcccagcacttggtcctaatgctgcaaaaagaccatattatcaagattttccagaaatagctgttctgccatacctaggtaattcgttgaaaaggcgttttgttggacttctttcgacattccccttatctggtggcctcaaaagattcttcccatgatgagaaaagtacttgtgaagacgccttctttctttcggaaaaaccaacattttactacttaatcttgtggagctagaagatatacatgagtgttgtgtgaggcggcggggcttcaataaggatcattatctgataatatctgagcatttcttttgcttgacatactgtcttagttgcacaaatttgttagttgcagatgtatattctgtcctgttctttttcatcagcttcaggtgggcaatggtgtaaattatgttttattaactcattgtacagtcataggatcatttcttgctagctgcatagtttacttcagcaaacagttcactggaaggaactaaaaatgtaatctttaaccattcctttttagtctctcaaaaaatatctgaagttttaccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="24075" stop="22693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23775" g_stop="23697" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23696" i_stop="23608" i_length="89">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23607" g_stop="22994" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="693" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="694" polyA_stop="706"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E374128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23775" e_stop="23697"/>
          <exon e_start="23607" e_stop="22994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACAAGATGATCCCGAGAGATTGTTGTGCAAATGGTTGAACCAATGCGGTCTGTCACATGACTTGACAGAAAACAGTGTAAGAATTTTGACTTTTGCATTCATTTTAAGCTTGTCTTGGTAGATTCTCAAAGTGTTGTTGTTTCTCACAAAATCTTTCTGCAACAGGGAACTGATGCAGATGGAGTAGACCTCCAAGGCACGCATCTGCCAGAAGATGGTCTTGTCCCAGCACTTGGTCCTAATGCTGCAAAAAGACCATATTATCAAGATTTTCCAGAAATAGCTGTTCTGCCATACCTAGGTAATTCGTTGAAAAGGCGTTTTGTTGGACTTCTTTCGACATTCCCCTTATCTGGTGGCCTCAAAAGATTCTTCCCATGATGAGAAAAGTACTTGTGAAGACGCCTTCTTTCTTTCGGAAAAACCAACATTTTACTACTTAATCTTGTGGAGCTAGAAGATATACATGAGTGTTGTGTGAGGCGGCGGGGCTTCAATAAGGATCATTATCTGATAATATCTGAGCATTTCTTTTGCTTGACATACTGTCTTAGTTGCACAAATTTGTTAGTTGCAGATGTATATTCTGTCCTGTTCTTTTTCATCAGCTTCAGGTGGGCAATGGTGTAAATTATGTTTTATTAACTCATTGTACAGTCATAGGATCATTTCTTGCTAGCTGCATAGTTTACTTCAGCAAACAGTTCACTGGAAGGAACTAAAAATGTAATCTTTAACCATTCCTTTTTAGTCTCTCAAAAAATATCTGAAGTTTTACC</genome_strand>
        <mrna_strand>ATCACAAGATGATCCCGAGAGATTGTTGTGCAAATGGTTGAACCAATGCGGTCTGTCACATGACTTGACAGAAAACAGT.........................................................................................GGAACTGATGCAGATGGAGTAGACCTCCAAGGCACGCATCTGCCAGAAGATGGTCTTGTCCCAGCACTTGGTCCTAATGCTGCAAAAAGACCATATTATCAAGATTTTCCAGAAATAGCTGTTCTGCCATACCTAGGTAATTCGTTGAAAAGGCGTTTTGTTGGACTTCTTTCGACATTCCCCTTATCTGGTGGCCTCAAAAGATTCTTCCCATGATGAGAAAAGTACTTGTGAAGACGCCTTCTTTCTTTCGGAAAAACCAACATTTTACTACTTAATCTTGTGGAGCTAGAAGATATACATGAGTGTTGTGTGAGGCGGCGGGGCTTCAATAAGGATCATTATCTGATAATATCTGAGCATTTCTTTTGCTTGACATACTGTCTTAGTTGCACAAATTTGTTAGTTGCAGATGTATATTCTGTCCTGTTCTTTTTCATCAGCTTCAGGTGGGCAATGGTGTAAATTATGTTTTATTAACTCATTGTACAGTCATAGGATCATTTCTTGCTAGCTGCATAGTTTACTTCAGCAAACAGTTCACTGGAAGGAACTAAAAATGTAATCTTTAACCATTCCTTTTTAGTCTCTCAAAAAATATCTGAAGTTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290706" ref_strand="+" ref_description="SGN-E290706 [cLET-10-G10]">
      <seq>aaaataaggtgatgatgcctccacttattcaggacatggggaaagaaattattcgtcgagaatcacaagatgatcccgagagattgttgtgcaaatggttgaaccaatgcggtctgtcacatgacttgacagaaaacagtggaactgatgcagatggagtagacctccaaggcacgcatctgccagaagatggtcttgtcccagcacttggtcctaatgctgcaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="24136" stop="23219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23836" g_stop="23697" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23696" i_stop="23608" i_length="89">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23607" g_stop="23519" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="229" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E290706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23836" e_stop="23697"/>
          <exon e_start="23607" e_stop="23519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAGGTGATGATGCCTCCACTTATTCAGGACATGGGGAAAGAAATTATTCGTCGAGAATCACAAGATGATCCCGAGAGATTGTTGTGCAAATGGTTGAACCAATGCGGTCTGTCACATGACTTGACAGAAAACAGTGTAAGAATTTTGACTTTTGCATTCATTTTAAGCTTGTCTTGGTAGATTCTCAAAGTGTTGTTGTTTCTCACAAAATCTTTCTGCAACAGGGAACTGATGCAGATGGAGTAGACCTCCAAGGCACGCATCTGCCAGAAGATGGTCTTGTCCCAGCACTTGGTCCTAATGCTGCAAAAAG</genome_strand>
        <mrna_strand>AAAATAAGGTGATGATGCCTCCACTTATTCAGGACATGGGGAAAGAAATTATTCGTCGAGAATCACAAGATGATCCCGAGAGATTGTTGTGCAAATGGTTGAACCAATGCGGTCTGTCACATGACTTGACAGAAAACAGT.........................................................................................GGAACTGATGCAGATGGAGTAGACCTCCAAGGCACGCATCTGCCAGAAGATGGTCTTGTCCCAGCACTTGGTCCTAATGCTGCAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705163" ref_strand="+" ref_description="SGN-E705163 [FA26BD06]">
      <seq>cgttaattcattgatttagcattaagagattgcttcaaagtatactttcacatgttctcttaactaggcacctaaccaggttattttgtttattgatgattaatatgacagatcatcttggtgtgttatatttgctctaaaagtattaccatatcagtgaactctttttatttattgtccagtacttggcaagttgcagtgctttactgaattttcatcttgttttgtctctgacatttacactgcacctcaggcatgaggcaaaattcatccaaaagatcattaaggagatactcaaaagattgaatcgcacagtacttagtgtaccttcatacacagttggactagaggctcgagtgaaggacattaactcatggttacaggatgaatccagtgaagttggcattgggatgatctgtggacttggtggcgttggaaagactactgttgctaaagtagcttacaactctaattatgatagatttgatgggagttgctttcttgcaaatgtcagagaaatctctgagaaacatccaaatggtcaggtttatttgcaaaaacaaattttcgaaagtattttgaaaggcagaaaggaaaaaatatacaatgctgatgaaggaattgtcaaaatgaaagatgctattggcaacaaaaaggtttttattgtatttgatgatgtggatcagctggatgtcttagattcacttattggaacaagggattggttttatccggggagtaaaattctcattacgacaaggtgtgagaaactattgaagtcctatgagaggcacatgctattcaagataaaggaacttggagatgacgagtctctaaagctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="25350" stop="23911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25055" g_stop="24211" g_length="845"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="844" r_length="844" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E705163" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25055" e_stop="24211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAAATTCATTGATTTAGCATTAAGAGATTGCTTCAAAGTATACTTTCACATGTTCTCTTAACTAGGCACCTAACCAGGTTATTTTGTTTATTGATGATTAATATGACAGATCATCTTGGTGTGTTATATTTGCTCTAAAAGTATTACCATATCAGTGAACTCTTTTTATTTATTGTCCAGTACTTGGCAAGTTGCAGTGCTTTACTGAATTTTCATCTTGTTTTGTCTCTGACATTTACACTGCACCTCAGGCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCAGCTGGATGTCTTAGATTCACTTATTGGAACAAGGGATTGGTTTTATCCGGGGAGTAAAATTCTCATTACGACAAGGTGTGAGAAACTATTGAAGTCCTATGAGAGGCACATGCTATTCAAGATAAAGGAACTTGGAGATGACGAGTCTCTAAAGCTCTT</genome_strand>
        <mrna_strand>CGTTAA-TTCATTGATTTAGCATTAAGAGATTGCTTCAAAGTATACTTTCACATGTTCTCTTAACTAGGCACCTAACCAGGTTATTTTGTTTATTGATGATTAATATGACAGATCATCTTGGTGTGTTATATTTGCTCTAAAAGTATTACCATATCAGTGAACTCTTTTTATTTATTGTCCAGTACTTGGCAAGTTGCAGTGCTTTACTGAATTTTCATCTTGTTTTGTCTCTGACATTTACACTGCACCTCAGGCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCAGCTGGATGTCTTAGATTCACTTATTGGAACAAGGGATTGGTTTTATCCGGGGAGTAAAATTCTCATTACGACAAGGTGTGAGAAACTATTGAAGTCCTATGAGAGGCACATGCTATTCAAGATAAAGGAACTTGGAGATGACGAGTCTCTAAAGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374129" ref_strand="+" ref_description="SGN-E374129 [TUS-33-J3]">
      <seq>aaaagagaggaaatgcagagagtggagagaaaagaaaggaatggatggagaagatggagaaatggagattagctctgaaggaagttgctgaattggaaggaatgtgcttagccaaagaagtagacgggcatgaggcaaaattcatccaaaagatcattaaggagatactcaaaagattgaatcgcacagtacttagtgtaccttcatacacagttggactagaggctcgagtgaaggacattaactcatggttacaggatgaatccagtgaagttggcattgggatgatctgtggacttggtggcgttggaaagactactgttgctaaagtagcttacaactctaattatgatagatttgatgggagttgctttcttgcaaatgtcagagaaatctctgagaaacatccaaatggtcaggtttatttgcaaaaacaaattttcgaaagtattttgaaaggcagaaaggaaaaaatatacaatgctgatgaaggaattgtcaaaatgaaagatgctattggcaacaaaaaggtttttattgtatttgatgatgtggatcagctggatgtcttagattcacttattggaacaagggattggttttatccggggagtaaaattctcattacgacaaggtgtgagaaactattgaagtcctatgagaggcacatgctattcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="27864" stop="23949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27564" g_stop="27438" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27437" i_stop="24802" i_length="2636">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24801" g_stop="24249" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="680" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E374129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27564" e_stop="27438"/>
          <exon e_start="24801" e_stop="24249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAGGAAATGCAGAGAGTGGAGAGAAAAGAAAGGAATGGATGGAGAAGATGGAGAAATGGAGATTAGCTCTGAAGGAAGTTGCTGAATTGGAAGGAATGTGCTTAGCCAAAGAAGTAGACGGGTCAGTTTCCTAAATTATCCAAACCCTTGATATTTTTTCTTCTTTTTCGGTATTTGCAGTTTATCCCCCCTTCATCAATTAGTCTTGAGAGCTTTGGTAGTTCTAATTGTTTCTGGTTAAAGAAATAGTTGTGGATTAATAATTGCTTTAATCTTTACTTGAAGGGAAACTTGGCTGATGATATTAGGAAAGTACTATAGATAATAATTTAAAACTATGTTTTGTTCTGGATTAAGTAGTCAAGCGATTGATTTCTCTATTTAAATCTGGAAGTTCTCTTTTGAGGATCAACGTTATTCCAACTTAGCCAACAAAGATTCGCCCCAAACAAGAAAACCTACTCATCAGTTGGAAAGTTCTGATGTAAATTTGCCATTCACTCAGCACTAGTTGTCCTGTATTTTAGGTGGCTTTTGCAATGACATAGTGCCAGTTTGCTAATTCATAAGTAAACAAGTTGTAAACTTAATTTTCTGAGAATAGCTTATAGTATCTATGCATCTGACTATCATAAATGTCCAAGTGACTAATGTGGCCCTCAAAATCATCTATTGTAAAGGTTATTTCAGGAAAAGATACACTGGAAATGCTAAATGAGCAAAATTTAAAAGCTGGATTGACGAAATTTCTGCCAAGGATGAAAAATTAACTGTGAACAGTCCAAACTTAAAAGGAGATTTAATATGTTAAAGACCCTGAATAGTACGTTGAGCTCTAACCAAGTTCGAGCAAAAAAGTTTAACAAAGTTGGCATAAATCTAATTTGAAAGACTAATCAGATGAAAGACACAAAGTTCAAAGCTAAAGATGACGAATTGCTACCTCAGGTTGGATTCTAGTCAAGTGTGACACTCACGTGTAAGTATGCCAAATGGCAAGTACTATGCTGCATAAGTCGCGATTGAAACTCACGGGGTTCCCCTAAAAGATAGAGATTCCTAGCTTTCATGTATATTCCTTTTCTCTGAATGTAATGTATTGTTGGTTATCTCCACTCTAGAGACAAACGAGGATGGTCTCCGGGCTTCTTTTGTGCTATGAAATGTGTCACGTGTGGATCCTATTAGAGAAGCCTCATAACTGATCCCTTTTACAGTATTTTCTGCCTGAAAGACTCAAACCACTAGAAATAGAGGGTCTTTTCCCTATTAGATCTATGCTGATTTTGAAAGGAGTCCACATAGACAACATACTGACTTGTACTTATCCATTACAATCACCTATATCCTTAGGAAACACATTTTAATGCCCAATATTTCTGACGACTCTTCAATTAGATTTCTGTGTCCTCTTTTCCATGGATGTGTGCTGCCTTCTACCTTGGGGGTATGGAGGCACCCTAGTTAAACTCTTGCTGTGTGTGGATGTGTGTGTGCATACATAAACATGTCCCTTAACTTGGTGTCGACGAACAATTATGCCCTCCATCTTTGTATGTGCACAAGTAGCCACTTAAACTATTATAAAATTGGACAATTAGACATGAGTGTCCTACATGGCATAATACACCTAGGATGCCATGTAGAATACAAAATTGCCATGTAGGGTCCCATGTAGGAAGAATGTGTCCATTTGCTTAATTTTATATAAATTTGAGTGCCCACTTGCGCACACCCAAAGTTAAAGGTCATAGTTGTGAATTGACGCCAAGTTAAGGGTCATGTTTATGTATAATGCCTTCTTTTTTCTTTTCCGTTCTTTCCTTCCTTTTCCTGCTTATCATATGCCAGAAGTTAGTAAGACCTCTCTCTGACTAGTTGAGGCAAAAAACTTGAACAATACAACTAGGGACACTTGGATTTAAACCTTGCTCTCAAATTATTCTGATTAAGATAGATGGGAGCAATAATTTCTTGCTTTCCACGGAATCTTCCTTCATGTCTGTGCATGCTCTTGACTTGTATGTGCTTTTAGCTTTTCCAATCAGCAGTTCTTCAAGCCATTGTTTCCTCAATTATTTGTTATCAGTGTCAAAATGATCTATTTAAAGAGTGAAGGATATAGAGGGTACCAAATAGCTGAATAGACAAATCAAAAGGTACAAAAGAACGAAATGTTGTCATGATACACTCCGTTCTCCTAATGTGGATGCACTTTGTATCAGTATCTTTTGGAAATTTTTGTATGATATAGCGTCAGTTATGATGAGGCTAAAGTTGTCTTAATCCTTTTCCACTTTTTCTAACCGGAAATGGTTCACTGTAATATTTCATGGTTCTCTATTTATTATACTACTTTATTTTGCTGTCCATTTCCCTCTTTGTTGCTCCTCAATATTGTCAAATTCTTCACAGCACACAAGTAAAAGTAAATATCACTCGTTTTTTCTCCTGTAGTACCAGTAAGCCACATATATTTCATCTCTGTTGCTTTTCTGGAAAATGTAAAATTCATTGATTTAGCATTAAGAGATTGCTTCAAAGTATACTTTCACATGTTCTCTTAACTAGGCACCTAACCAGGTTATTTTGTTTATTGATGATTAATATGACAGATCATCTTGGTGTGTTATATTTGCTCTAAAAGTATTACCATATCAGTGAACTCTTTTTATTTATTGTCCAGTACTTGGCAAGTTGCAGTGCTTTACTGAATTTTCATCTTGTTTTGTCTCTGACATTTACACTGCACCTCAGGCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCAGCTGGATGTCTTAGATTCACTTATTGGAACAAGGGATTGGTTTTATCCGGGGAGTAAAATTCTCATTACGACAAGGTGTGAGAAACTATTGAAGTCCTATGAGAGGCACATGCTATTCAAG</genome_strand>
        <mrna_strand>AAAAGAGAGGAAATGCAGAGAGTGGAGAGAAAAGAAAGGAATGGATGGAGAAGATGGAGAAATGGAGATTAGCTCTGAAGGAAGTTGCTGAATTGGAAGGAATGTGCTTAGCCAAAGAAGTAGACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCAGCTGGATGTCTTAGATTCACTTATTGGAACAAGGGATTGGTTTTATCCGGGGAGTAAAATTCTCATTACGACAAGGTGTGAGAAACTATTGAAGTCCTATGAGAGGCACATGCTATTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209975" ref_strand="+" ref_description="SGN-E209975 [cLEC-40-O9]">
      <seq>gaaaagaaaggaatggatggagaagatggagaaatggagattagctctgaaggaagttgctgaattggaaggaatgtgcttagccaaagaagtagacgggcatgaggcaaaattcatccaaaagatcattaaggagatactcaaaagattgaatcgcacagtacttagtgtaccttcatacacagttggactagaggctcgagtgaaggacattaactcatggttacaggatgaatccagtgaagttggcattgggatgatctgtggacttggtggcgttggaaagactactgttgctaaagtagcttacaactctaattatgatagatttgatgggagttgctttcttgcaaatgtcagagaaatctctgagaaacatccaaatggtcaggtttatttgcaaaaacaaattttcgaaagtattttgaaaggcagaaaggaaaaaatatacaatgctgatgaaggaattgtcaaaatgaaagatgctattggcaacaaaaaggtttttattgtatttgatgatgtggatcagctggatgtcttagattcacttattggaacaagggattggttttatccggggagtaaaattctcattacgacaaggtgtgagaaactattgaagtcctatgagaggcacatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="27836" stop="23955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27536" g_stop="27438" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27437" i_stop="24802" i_length="2636">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24801" g_stop="24255" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="646" r_length="547" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E209975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27536" e_stop="27438"/>
          <exon e_start="24801" e_stop="24255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAAAGGAATGGATGGAGAAGATGGAGAAATGGAGATTAGCTCTGAAGGAAGTTGCTGAATTGGAAGGAATGTGCTTAGCCAAAGAAGTAGACGGGTCAGTTTCCTAAATTATCCAAACCCTTGATATTTTTTCTTCTTTTTCGGTATTTGCAGTTTATCCCCCCTTCATCAATTAGTCTTGAGAGCTTTGGTAGTTCTAATTGTTTCTGGTTAAAGAAATAGTTGTGGATTAATAATTGCTTTAATCTTTACTTGAAGGGAAACTTGGCTGATGATATTAGGAAAGTACTATAGATAATAATTTAAAACTATGTTTTGTTCTGGATTAAGTAGTCAAGCGATTGATTTCTCTATTTAAATCTGGAAGTTCTCTTTTGAGGATCAACGTTATTCCAACTTAGCCAACAAAGATTCGCCCCAAACAAGAAAACCTACTCATCAGTTGGAAAGTTCTGATGTAAATTTGCCATTCACTCAGCACTAGTTGTCCTGTATTTTAGGTGGCTTTTGCAATGACATAGTGCCAGTTTGCTAATTCATAAGTAAACAAGTTGTAAACTTAATTTTCTGAGAATAGCTTATAGTATCTATGCATCTGACTATCATAAATGTCCAAGTGACTAATGTGGCCCTCAAAATCATCTATTGTAAAGGTTATTTCAGGAAAAGATACACTGGAAATGCTAAATGAGCAAAATTTAAAAGCTGGATTGACGAAATTTCTGCCAAGGATGAAAAATTAACTGTGAACAGTCCAAACTTAAAAGGAGATTTAATATGTTAAAGACCCTGAATAGTACGTTGAGCTCTAACCAAGTTCGAGCAAAAAAGTTTAACAAAGTTGGCATAAATCTAATTTGAAAGACTAATCAGATGAAAGACACAAAGTTCAAAGCTAAAGATGACGAATTGCTACCTCAGGTTGGATTCTAGTCAAGTGTGACACTCACGTGTAAGTATGCCAAATGGCAAGTACTATGCTGCATAAGTCGCGATTGAAACTCACGGGGTTCCCCTAAAAGATAGAGATTCCTAGCTTTCATGTATATTCCTTTTCTCTGAATGTAATGTATTGTTGGTTATCTCCACTCTAGAGACAAACGAGGATGGTCTCCGGGCTTCTTTTGTGCTATGAAATGTGTCACGTGTGGATCCTATTAGAGAAGCCTCATAACTGATCCCTTTTACAGTATTTTCTGCCTGAAAGACTCAAACCACTAGAAATAGAGGGTCTTTTCCCTATTAGATCTATGCTGATTTTGAAAGGAGTCCACATAGACAACATACTGACTTGTACTTATCCATTACAATCACCTATATCCTTAGGAAACACATTTTAATGCCCAATATTTCTGACGACTCTTCAATTAGATTTCTGTGTCCTCTTTTCCATGGATGTGTGCTGCCTTCTACCTTGGGGGTATGGAGGCACCCTAGTTAAACTCTTGCTGTGTGTGGATGTGTGTGTGCATACATAAACATGTCCCTTAACTTGGTGTCGACGAACAATTATGCCCTCCATCTTTGTATGTGCACAAGTAGCCACTTAAACTATTATAAAATTGGACAATTAGACATGAGTGTCCTACATGGCATAATACACCTAGGATGCCATGTAGAATACAAAATTGCCATGTAGGGTCCCATGTAGGAAGAATGTGTCCATTTGCTTAATTTTATATAAATTTGAGTGCCCACTTGCGCACACCCAAAGTTAAAGGTCATAGTTGTGAATTGACGCCAAGTTAAGGGTCATGTTTATGTATAATGCCTTCTTTTTTCTTTTCCGTTCTTTCCTTCCTTTTCCTGCTTATCATATGCCAGAAGTTAGTAAGACCTCTCTCTGACTAGTTGAGGCAAAAAACTTGAACAATACAACTAGGGACACTTGGATTTAAACCTTGCTCTCAAATTATTCTGATTAAGATAGATGGGAGCAATAATTTCTTGCTTTCCACGGAATCTTCCTTCATGTCTGTGCATGCTCTTGACTTGTATGTGCTTTTAGCTTTTCCAATCAGCAGTTCTTCAAGCCATTGTTTCCTCAATTATTTGTTATCAGTGTCAAAATGATCTATTTAAAGAGTGAAGGATATAGAGGGTACCAAATAGCTGAATAGACAAATCAAAAGGTACAAAAGAACGAAATGTTGTCATGATACACTCCGTTCTCCTAATGTGGATGCACTTTGTATCAGTATCTTTTGGAAATTTTTGTATGATATAGCGTCAGTTATGATGAGGCTAAAGTTGTCTTAATCCTTTTCCACTTTTTCTAACCGGAAATGGTTCACTGTAATATTTCATGGTTCTCTATTTATTATACTACTTTATTTTGCTGTCCATTTCCCTCTTTGTTGCTCCTCAATATTGTCAAATTCTTCACAGCACACAAGTAAAAGTAAATATCACTCGTTTTTTCTCCTGTAGTACCAGTAAGCCACATATATTTCATCTCTGTTGCTTTTCTGGAAAATGTAAAATTCATTGATTTAGCATTAAGAGATTGCTTCAAAGTATACTTTCACATGTTCTCTTAACTAGGCACCTAACCAGGTTATTTTGTTTATTGATGATTAATATGACAGATCATCTTGGTGTGTTATATTTGCTCTAAAAGTATTACCATATCAGTGAACTCTTTTTATTTATTGTCCAGTACTTGGCAAGTTGCAGTGCTTTACTGAATTTTCATCTTGTTTTGTCTCTGACATTTACACTGCACCTCAGGCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCAGCTGGATGTCTTAGATTCACTTATTGGAACAAGGGATTGGTTTTATCCGGGGAGTAAAATTCTCATTACGACAAGGTGTGAGAAACTATTGAAGTCCTATGAGAGGCACATGCTA</genome_strand>
        <mrna_strand>GAAAAGAAAGGAATGGATGGAGAAGATGGAGAAATGGAGATTAGCTCTGAAGGAAGTTGCTGAATTGGAAGGAATGTGCTTAGCCAAAGAAGTAGACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCAGCTGGATGTCTTAGATTCACTTATTGGAACAAGGGATTGGTTTTATCCGGGGAGTAAAATTCTCATTACGACAAGGTGTGAGAAACTATTGAAGTCCTATGAGAGGCACATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305566" ref_strand="+" ref_description="SGN-E305566 [cLEX-14-M21]">
      <seq>aaaagagaggaaatgcagagagtggagagaaaagaaagggagggatggagaaatctgtaaaatggagattagctctgaaggaagttgctgaattggaaggaatgtgcttagccaaagaagtagacgggcatgaggcaaaattcatccaaaagatcattaaggagatactcaaaagattgaatcgcacagtacttagtgtaccttcatacacagttggactagaggctcgagtgaaggacattaactcatggttacaggatgaatccagtgaagttggcattgggatgatctgtggacttggtggcgttggaaagactactgttgctaaagtagcttacaactctaattatgatagatttgatgggagttgctttcttgcaaatgtcagagaaatctctgagaaacatccaaatggtcaggtttatttgcaaaaacaaattttcgaaagtattttgaaaggcagaaaggaaaaaatatacaatgctgatgaaggaattgtcaaaatgaaagatgctattggcaacaaaaaggtttttattgtatttgatgatgtggatcacctggatgtcttagattcacttattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="27864" stop="24043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27564" g_stop="27438" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27437" i_stop="24802" i_length="2636">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24801" g_stop="24343" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="586" r_length="459" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E305566" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27564" e_stop="27438"/>
          <exon e_start="24801" e_stop="24343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAGGAAATGCAGAGAGTGGAGAGAAAAGAAAGGAATGGATGGAGAAGATGGAGAAATGGAGATTAGCTCTGAAGGAAGTTGCTGAATTGGAAGGAATGTGCTTAGCCAAAGAAGTAGACGGGTCAGTTTCCTAAATTATCCAAACCCTTGATATTTTTTCTTCTTTTTCGGTATTTGCAGTTTATCCCCCCTTCATCAATTAGTCTTGAGAGCTTTGGTAGTTCTAATTGTTTCTGGTTAAAGAAATAGTTGTGGATTAATAATTGCTTTAATCTTTACTTGAAGGGAAACTTGGCTGATGATATTAGGAAAGTACTATAGATAATAATTTAAAACTATGTTTTGTTCTGGATTAAGTAGTCAAGCGATTGATTTCTCTATTTAAATCTGGAAGTTCTCTTTTGAGGATCAACGTTATTCCAACTTAGCCAACAAAGATTCGCCCCAAACAAGAAAACCTACTCATCAGTTGGAAAGTTCTGATGTAAATTTGCCATTCACTCAGCACTAGTTGTCCTGTATTTTAGGTGGCTTTTGCAATGACATAGTGCCAGTTTGCTAATTCATAAGTAAACAAGTTGTAAACTTAATTTTCTGAGAATAGCTTATAGTATCTATGCATCTGACTATCATAAATGTCCAAGTGACTAATGTGGCCCTCAAAATCATCTATTGTAAAGGTTATTTCAGGAAAAGATACACTGGAAATGCTAAATGAGCAAAATTTAAAAGCTGGATTGACGAAATTTCTGCCAAGGATGAAAAATTAACTGTGAACAGTCCAAACTTAAAAGGAGATTTAATATGTTAAAGACCCTGAATAGTACGTTGAGCTCTAACCAAGTTCGAGCAAAAAAGTTTAACAAAGTTGGCATAAATCTAATTTGAAAGACTAATCAGATGAAAGACACAAAGTTCAAAGCTAAAGATGACGAATTGCTACCTCAGGTTGGATTCTAGTCAAGTGTGACACTCACGTGTAAGTATGCCAAATGGCAAGTACTATGCTGCATAAGTCGCGATTGAAACTCACGGGGTTCCCCTAAAAGATAGAGATTCCTAGCTTTCATGTATATTCCTTTTCTCTGAATGTAATGTATTGTTGGTTATCTCCACTCTAGAGACAAACGAGGATGGTCTCCGGGCTTCTTTTGTGCTATGAAATGTGTCACGTGTGGATCCTATTAGAGAAGCCTCATAACTGATCCCTTTTACAGTATTTTCTGCCTGAAAGACTCAAACCACTAGAAATAGAGGGTCTTTTCCCTATTAGATCTATGCTGATTTTGAAAGGAGTCCACATAGACAACATACTGACTTGTACTTATCCATTACAATCACCTATATCCTTAGGAAACACATTTTAATGCCCAATATTTCTGACGACTCTTCAATTAGATTTCTGTGTCCTCTTTTCCATGGATGTGTGCTGCCTTCTACCTTGGGGGTATGGAGGCACCCTAGTTAAACTCTTGCTGTGTGTGGATGTGTGTGTGCATACATAAACATGTCCCTTAACTTGGTGTCGACGAACAATTATGCCCTCCATCTTTGTATGTGCACAAGTAGCCACTTAAACTATTATAAAATTGGACAATTAGACATGAGTGTCCTACATGGCATAATACACCTAGGATGCCATGTAGAATACAAAATTGCCATGTAGGGTCCCATGTAGGAAGAATGTGTCCATTTGCTTAATTTTATATAAATTTGAGTGCCCACTTGCGCACACCCAAAGTTAAAGGTCATAGTTGTGAATTGACGCCAAGTTAAGGGTCATGTTTATGTATAATGCCTTCTTTTTTCTTTTCCGTTCTTTCCTTCCTTTTCCTGCTTATCATATGCCAGAAGTTAGTAAGACCTCTCTCTGACTAGTTGAGGCAAAAAACTTGAACAATACAACTAGGGACACTTGGATTTAAACCTTGCTCTCAAATTATTCTGATTAAGATAGATGGGAGCAATAATTTCTTGCTTTCCACGGAATCTTCCTTCATGTCTGTGCATGCTCTTGACTTGTATGTGCTTTTAGCTTTTCCAATCAGCAGTTCTTCAAGCCATTGTTTCCTCAATTATTTGTTATCAGTGTCAAAATGATCTATTTAAAGAGTGAAGGATATAGAGGGTACCAAATAGCTGAATAGACAAATCAAAAGGTACAAAAGAACGAAATGTTGTCATGATACACTCCGTTCTCCTAATGTGGATGCACTTTGTATCAGTATCTTTTGGAAATTTTTGTATGATATAGCGTCAGTTATGATGAGGCTAAAGTTGTCTTAATCCTTTTCCACTTTTTCTAACCGGAAATGGTTCACTGTAATATTTCATGGTTCTCTATTTATTATACTACTTTATTTTGCTGTCCATTTCCCTCTTTGTTGCTCCTCAATATTGTCAAATTCTTCACAGCACACAAGTAAAAGTAAATATCACTCGTTTTTTCTCCTGTAGTACCAGTAAGCCACATATATTTCATCTCTGTTGCTTTTCTGGAAAATGTAAAATTCATTGATTTAGCATTAAGAGATTGCTTCAAAGTATACTTTCACATGTTCTCTTAACTAGGCACCTAACCAGGTTATTTTGTTTATTGATGATTAATATGACAGATCATCTTGGTGTGTTATATTTGCTCTAAAAGTATTACCATATCAGTGAACTCTTTTTATTTATTGTCCAGTACTTGGCAAGTTGCAGTGCTTTACTGAATTTTCATCTTGTTTTGTCTCTGACATTTACACTGCACCTCAGGCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCAGCTGGATGTCTTAGATTCACTTATTGG</genome_strand>
        <mrna_strand>AAAAGAGAGGAAATGCAGAGAGTGGAGAGAAAAGAAAGGGAGGGATGGAGAAATCTGTAAAATGGAGATTAGCTCTGAAGGAAGTTGCTGAATTGGAAGGAATGTGCTTAGCCAAAGAAGTAGACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCACCTGGATGTCTTAGATTCACTTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201608" ref_strand="+" ref_description="SGN-E201608 [cLEC-11-E10]">
      <seq>aaaaactttactgatcatctctacacagctctcatcaacgctggaattcgaacttttcgagatgatgacgaaatccgcaggggagaaaacatagaatctgaactgcaaaagggtattcgagaatccaagatttcactaattgtcttctctaaagactacgcttcttcaagatggtgtcttgatgagcttgtcaacattcttgatcgaagaaagaaagagggtcatactgtcttgcctgttttttacactgtcagccctgaggatgttcagaaccaaagtggaagttttgctgaagcttttgtgaatcatgaaaagagaggaaatgcagagagtggagagaaaagaaaggaatggatggagaagatggagaaatggagattagctctgaaggaagttgctgaattggaaggaatgtgcttagccaaagaagtagacgggcatgaggcaaaattcatccaaaagatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="28174" stop="24471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27874" g_stop="27438" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27437" i_stop="24802" i_length="2636">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24801" g_stop="24771" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="468" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E201608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27874" e_stop="27438"/>
          <exon e_start="24801" e_stop="24771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTTACTGATCATCTCTACACAGCTCTCATCAACGCTGGAATTCGAACTTTTCGAGATGATGACGAAATCCGCAGGGGAGAAAACATAGAATCTGAACTGCAAAAGGGTATTCGAGAATCCAAGATTTCACTAATTGTCTTCTCTAAAGACTACGCTTCTTCAAGATGGTGTCTTGATGAGCTTGTCAACATTCTTGATCGAAGAAAGAAAGAGGGTCATACTGTCTTGCCTGTTTTTTACACTGTCAGCCCTGAGGATGTTCAGAACCAAAGTGGAAGTTTTGCTGAAGCTTTTGTGAATCATGAAAAGAGAGGAAATGCAGAGAGTGGAGAGAAAAGAAAGGAATGGATGGAGAAGATGGAGAAATGGAGATTAGCTCTGAAGGAAGTTGCTGAATTGGAAGGAATGTGCTTAGCCAAAGAAGTAGACGGGTCAGTTTCCTAAATTATCCAAACCCTTGATATTTTTTCTTCTTTTTCGGTATTTGCAGTTTATCCCCCCTTCATCAATTAGTCTTGAGAGCTTTGGTAGTTCTAATTGTTTCTGGTTAAAGAAATAGTTGTGGATTAATAATTGCTTTAATCTTTACTTGAAGGGAAACTTGGCTGATGATATTAGGAAAGTACTATAGATAATAATTTAAAACTATGTTTTGTTCTGGATTAAGTAGTCAAGCGATTGATTTCTCTATTTAAATCTGGAAGTTCTCTTTTGAGGATCAACGTTATTCCAACTTAGCCAACAAAGATTCGCCCCAAACAAGAAAACCTACTCATCAGTTGGAAAGTTCTGATGTAAATTTGCCATTCACTCAGCACTAGTTGTCCTGTATTTTAGGTGGCTTTTGCAATGACATAGTGCCAGTTTGCTAATTCATAAGTAAACAAGTTGTAAACTTAATTTTCTGAGAATAGCTTATAGTATCTATGCATCTGACTATCATAAATGTCCAAGTGACTAATGTGGCCCTCAAAATCATCTATTGTAAAGGTTATTTCAGGAAAAGATACACTGGAAATGCTAAATGAGCAAAATTTAAAAGCTGGATTGACGAAATTTCTGCCAAGGATGAAAAATTAACTGTGAACAGTCCAAACTTAAAAGGAGATTTAATATGTTAAAGACCCTGAATAGTACGTTGAGCTCTAACCAAGTTCGAGCAAAAAAGTTTAACAAAGTTGGCATAAATCTAATTTGAAAGACTAATCAGATGAAAGACACAAAGTTCAAAGCTAAAGATGACGAATTGCTACCTCAGGTTGGATTCTAGTCAAGTGTGACACTCACGTGTAAGTATGCCAAATGGCAAGTACTATGCTGCATAAGTCGCGATTGAAACTCACGGGGTTCCCCTAAAAGATAGAGATTCCTAGCTTTCATGTATATTCCTTTTCTCTGAATGTAATGTATTGTTGGTTATCTCCACTCTAGAGACAAACGAGGATGGTCTCCGGGCTTCTTTTGTGCTATGAAATGTGTCACGTGTGGATCCTATTAGAGAAGCCTCATAACTGATCCCTTTTACAGTATTTTCTGCCTGAAAGACTCAAACCACTAGAAATAGAGGGTCTTTTCCCTATTAGATCTATGCTGATTTTGAAAGGAGTCCACATAGACAACATACTGACTTGTACTTATCCATTACAATCACCTATATCCTTAGGAAACACATTTTAATGCCCAATATTTCTGACGACTCTTCAATTAGATTTCTGTGTCCTCTTTTCCATGGATGTGTGCTGCCTTCTACCTTGGGGGTATGGAGGCACCCTAGTTAAACTCTTGCTGTGTGTGGATGTGTGTGTGCATACATAAACATGTCCCTTAACTTGGTGTCGACGAACAATTATGCCCTCCATCTTTGTATGTGCACAAGTAGCCACTTAAACTATTATAAAATTGGACAATTAGACATGAGTGTCCTACATGGCATAATACACCTAGGATGCCATGTAGAATACAAAATTGCCATGTAGGGTCCCATGTAGGAAGAATGTGTCCATTTGCTTAATTTTATATAAATTTGAGTGCCCACTTGCGCACACCCAAAGTTAAAGGTCATAGTTGTGAATTGACGCCAAGTTAAGGGTCATGTTTATGTATAATGCCTTCTTTTTTCTTTTCCGTTCTTTCCTTCCTTTTCCTGCTTATCATATGCCAGAAGTTAGTAAGACCTCTCTCTGACTAGTTGAGGCAAAAAACTTGAACAATACAACTAGGGACACTTGGATTTAAACCTTGCTCTCAAATTATTCTGATTAAGATAGATGGGAGCAATAATTTCTTGCTTTCCACGGAATCTTCCTTCATGTCTGTGCATGCTCTTGACTTGTATGTGCTTTTAGCTTTTCCAATCAGCAGTTCTTCAAGCCATTGTTTCCTCAATTATTTGTTATCAGTGTCAAAATGATCTATTTAAAGAGTGAAGGATATAGAGGGTACCAAATAGCTGAATAGACAAATCAAAAGGTACAAAAGAACGAAATGTTGTCATGATACACTCCGTTCTCCTAATGTGGATGCACTTTGTATCAGTATCTTTTGGAAATTTTTGTATGATATAGCGTCAGTTATGATGAGGCTAAAGTTGTCTTAATCCTTTTCCACTTTTTCTAACCGGAAATGGTTCACTGTAATATTTCATGGTTCTCTATTTATTATACTACTTTATTTTGCTGTCCATTTCCCTCTTTGTTGCTCCTCAATATTGTCAAATTCTTCACAGCACACAAGTAAAAGTAAATATCACTCGTTTTTTCTCCTGTAGTACCAGTAAGCCACATATATTTCATCTCTGTTGCTTTTCTGGAAAATGTAAAATTCATTGATTTAGCATTAAGAGATTGCTTCAAAGTATACTTTCACATGTTCTCTTAACTAGGCACCTAACCAGGTTATTTTGTTTATTGATGATTAATATGACAGATCATCTTGGTGTGTTATATTTGCTCTAAAAGTATTACCATATCAGTGAACTCTTTTTATTTATTGTCCAGTACTTGGCAAGTTGCAGTGCTTTACTGAATTTTCATCTTGTTTTGTCTCTGACATTTACACTGCACCTCAGGCATGAGGCAAAATTCATCCAAAAGATCATT</genome_strand>
        <mrna_strand>AAAAACTTTACTGATCATCTCTACACAGCTCTCATCAACGCTGGAATTCGAACTTTTCGAGATGATGACGAAATCCGCAGGGGAGAAAACATAGAATCTGAACTGCAAAAGGGTATTCGAGAATCCAAGATTTCACTAATTGTCTTCTCTAAAGACTACGCTTCTTCAAGATGGTGTCTTGATGAGCTTGTCAACATTCTTGATCGAAGAAAGAAAGAGGGTCATACTGTCTTGCCTGTTTTTTACACTGTCAGCCCTGAGGATGTTCAGAACCAAAGTGGAAGTTTTGCTGAAGCTTTTGTGAATCATGAAAAGAGAGGAAATGCAGAGAGTGGAGAGAAAAGAAAGGAATGGATGGAGAAGATGGAGAAATGGAGATTAGCTCTGAAGGAAGTTGCTGAATTGGAAGGAATGTGCTTAGCCAAAGAAGTAGACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAGGCAAAATTCATCCAAAAGATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204366" ref_strand="+" ref_description="SGN-E204366 [cLEC-13-O18]">
      <seq>tttgactttgcatcaactctcagttgtgtcatcgttttcttggacttttttcaatggcaaccccacaaaaccgttattctttccatgttttcttgagttttagaggcgaagacacccggaaaaactttactgatcatctttacacagctctcatcaacgctggaattcgaacttttcgagatgatgacgaaatccgcacgggagaaaacatagaatctgaactgccaaagggtattctagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="28293" stop="27450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27993" g_stop="27750" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E204366" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27993" e_stop="27750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCTTTGCATCAACTCTCAGTTGTGTCATCGTTTTCTTGGACTTTTTTCAATGGCAACCCCACAAAACCGTTATTCTTTCCATGTTTTCTTGAGTTTTAGAGGCGAAGACACCCGGAAAAACTTTACTGATCATCTCTACACAGCTCTCATCAACGCTGGAATTCGAACTTTTCGAGATGATGACGAAATCCGCAGGGGAGAAAACATAGAATCTGAACTGCAAAAGGGTATTCGAGAATC</genome_strand>
        <mrna_strand>TTTGACTTTGCATCAACTCTCAGTTGTGTCATCGTTTTCTTGGACTTTTTTCAATGGCAACCCCACAAAACCGTTATTCTTTCCATGTTTTCTTGAGTTTTAGAGGCGAAGACACCCGGAAAAACTTTACTGATCATCTTTACACAGCTCTCATCAACGCTGGAATTCGAACTTTTCGAGATGATGACGAAATCCGCACGGGAGAAAACATAGAATCTGAACTGCCAAAGGGTATTCTAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554648" ref_strand="+" ref_description="SGN-E554648 [cTSC-4-P20]">
      <seq>cagtgctccaaatcaatttgggtgaaaatcaagaagaggaagaagaacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaataagatacttaacaaacatgtccacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttactatttatgttctggttttctatatatctactctctactttctctccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31880" stop="28202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31580" g_stop="31261" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28505" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="525" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E554648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31580" e_stop="31261"/>
          <exon e_start="28709" e_stop="28505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGCTCCAAATCAATTTGGGTGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTATATATCTACTCTCTACTTTCTCTCC</genome_strand>
        <mrna_strand>CAGTGCTCCAAATCAATTTGGGTGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTATATATCTACTCTCTACTTTCTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552180" ref_strand="+" ref_description="SGN-E552180 [cTSB-3-B23]">
      <seq>gaagaacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaataagatacttaacaaacatgtccacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttactatttatgttctggttttctatatatctactctctactttctctccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31839" stop="28202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31539" g_stop="31261" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28505" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="484" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="497"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E552180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31539" e_stop="31261"/>
          <exon e_start="28709" e_stop="28505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTATATATCTACTCTCTACTTTCTCTCC</genome_strand>
        <mrna_strand>GAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTATATATCTACTCTCTACTTTCTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552201" ref_strand="+" ref_description="SGN-E552201 [cTSB-3-C3]">
      <seq>gaagaacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaataagatacttaacaaacatgtccacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttactatttatgttctggttttctatatatctactctctactttctctccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31839" stop="28202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31539" g_stop="31261" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28505" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="484" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="497"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E552201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31539" e_stop="31261"/>
          <exon e_start="28709" e_stop="28505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTATATATCTACTCTCTACTTTCTCTCC</genome_strand>
        <mrna_strand>GAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTATATATCTACTCTCTACTTTCTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691842" ref_strand="+" ref_description="SGN-E691842 [LH_Ea07C16]">
      <seq>tcagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgcagttgtagccttcagcatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgttgcttctcactctcactgagatttgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgattaaccagttcagtcgtgtttttttctcagtaatcatcaattaataagatacttaataaacatgtccacatgttgcctcagtttattttagacttgtgttgtaacaagattaatgagcagtctgctttactatgtatgttctggttttctataaatctactctcttctttctctccataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31833" stop="28202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31534" g_stop="31261" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28505" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="479" r_length="205" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="480" polyA_stop="495"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E691842" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31534" e_stop="31261"/>
          <exon e_start="28709" e_stop="28505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTATATATCTACTCTCTACTTTCTCTCC</genome_strand>
        <mrna_strand>TCAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCAGTTGTAGCCTTCAGCATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGTTGCTTCTCACTCTCACTGAGATTTGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGATTAACCAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATTAATAAGATACTTAATAAACATGTCCACATGTTGCCTCAGTTTATTTTAGACTTGTGTTGTAACAAGATTAATGAGCAGTCTGCTTTACTATGTATGTTCTGGTTTTCTATAAATCTACTCTCTTCTTTCTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548450" ref_strand="+" ref_description="SGN-E548450 [TUS-61-F1]">
      <seq>gaagaggaagaagaacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaataagatacttaacaaacatgtccacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttactatttatgttctggttttctataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31848" stop="28226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31548" g_stop="31261" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28519" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="479" r_length="191" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E548450" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31548" e_stop="31261"/>
          <exon e_start="28709" e_stop="28519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTATATATCTACTC</genome_strand>
        <mrna_strand>GAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291188" ref_strand="+" ref_description="SGN-E291188 [cLET-8-P6]">
      <seq>aagaggaagaagaacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaataagatacttaacaaacatgtccacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttactatttatgttctggttttctataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31847" stop="28226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31547" g_stop="31261" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28520" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="477" r_length="190" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E291188" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31547" e_stop="31261"/>
          <exon e_start="28709" e_stop="28520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTATATATCTACT</genome_strand>
        <mrna_strand>AAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540832" ref_strand="+" ref_description="SGN-E540832 [TUS-61-F1](-)">
      <seq>gaagaggaagaagaacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaataagatacttaacaaacatgtccacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttactatttatgttctggttttctataaaaaaaaaaaaaaaaaactcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31848" stop="28226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31548" g_stop="31261" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28529" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="469" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="470" polyA_stop="488"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E540832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31548" e_stop="31261"/>
          <exon e_start="28709" e_stop="28529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTAT</genome_strand>
        <mrna_strand>GAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297974" ref_strand="+" ref_description="SGN-E297974 [cLET-38-B10]">
      <seq>aagaggaagaagaacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaataagatacttaacaaacatgtccacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttactatttatgttctggttttctattnnnnaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31847" stop="28229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31547" g_stop="31261" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28529" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="468" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="505"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E297974" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31547" e_stop="31261"/>
          <exon e_start="28709" e_stop="28529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTAT</genome_strand>
        <mrna_strand>AAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715180" ref_strand="+" ref_description="SGN-E715180 [FB13CC10]">
      <seq>attgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaataagatacttaacaaacatgtccacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttactatttatgttctggttttctataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31812" stop="28226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31512" g_stop="31261" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28529" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="433" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="448"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E715180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31512" e_stop="31261"/>
          <exon e_start="28709" e_stop="28529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTAT</genome_strand>
        <mrna_strand>ATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222989" ref_strand="+" ref_description="SGN-E222989 [cLEL-14-H16](-)">
      <seq>gagtttttcagcagaagggccgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaacatgtctactccttctcactccacctcttcggccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaatatagattcttaaccaacatgtccacatgttgcctcgatttttttgagacttgtgttgtatcaagattaatgagcagtttgctttactatttatgttctggttttctataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31796" stop="28226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31496" g_stop="31261" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28529" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="418" r_length="182" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="435"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E222989" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31496" e_stop="31261"/>
          <exon e_start="28709" e_stop="28529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATA-AGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTAT</genome_strand>
        <mrna_strand>GAGTTTTTCAGCAGAAGGGCCGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAACATGTCTACTCCTTCTCACTCCACCTCTTCGGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATATAGATTCTTAACCAACATGTCCACATGTTGCCTCGATTTTTTTGAGACTTGTGTTGTATCAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223349" ref_strand="+" ref_description="SGN-E223349 [cLEL-14-H16](-)">
      <seq>tgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaataagatacttaacaaacatgtccacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttactatttatgttctggttttctataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31756" stop="28226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31456" g_stop="31261" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28529" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="377" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="394"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E223349" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31456" e_stop="31261"/>
          <exon e_start="28709" e_stop="28529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTAT</genome_strand>
        <mrna_strand>TGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619887" ref_strand="+" ref_description="SGN-E619887 [70582]">
      <seq>tgaaaatcaagaagaggaagaagaacagatcgaaaatggggaagccattggggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgacacgctttccctggtcttggcatcgctgttgtagccttcagcatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgtttctcactctcactgagattcgatatgggtcgggctggtagtgaaccccatttgtctcttttggtgaggtggtagtttaagaactgggatgactatacagttcagtcgtgttttttctcagtaatcatcaataagatacttaacaaacatggacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttactatgtattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31858" stop="28242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31558" g_stop="31261" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28540" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="462" r_length="163" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E619887" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31558" e_stop="31261"/>
          <exon e_start="28709" e_stop="28540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATT-GGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTC</genome_strand>
        <mrna_strand>TGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGACACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGCATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGTTTCTCACTCTCACTGAGATTCGATATGGGTCGGGCTGGTAGTGAACCCCATTTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTTTAAGAACTGGGATGACTATACAGTTCAGTCGTG-TTTTTTCTCAGT-A--ATC-ATCAATAAGATACTTAACAAACATG--GACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATGTATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733148" ref_strand="+" ref_description="SGN-E733148 [LB04AD08]">
      <seq>aatttgggtgaaaatcaagaagaggaagaagaacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaataagatacttaacaaacatgtccacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31866" stop="28252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31566" g_stop="31261" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28542" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="474" r_length="168" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E733148" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31566" e_stop="31261"/>
          <exon e_start="28709" e_stop="28542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGGGTGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGT</genome_strand>
        <mrna_strand>AATTTGGGTGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591468" ref_strand="+" ref_description="SGN-E591468 [45181]">
      <seq>tgaaaatcaagaagaggaagaagaacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgacacgctttccctggtcttggcatcgctgttgtagccttcagcatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgtttctcactctcactgagattctatatgggtcgtgcttgtagtgaacctcaattgtctcttttggtgaggtggtagtgcaagaactgggatgtctatacagttcagtcgtgttttttctcagtaatcatcaataagatacttaacaaacattgacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttactatgtattatcctcggttttgtggttttctatgaatcaactatttcatgggctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31858" stop="28231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31558" g_stop="31261" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28544" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="457" r_length="159" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E591468" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31558" e_stop="31261"/>
          <exon e_start="28709" e_stop="28544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTAT</genome_strand>
        <mrna_strand>TGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGACACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGCATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGTTTCTCACTCTCACTGAGATTCTATATGGGTCGTGCTTGTAGTGAACCTCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCAAGAACTGGGATGTCTATACAGTTCAGTCGTG-TTTTTTCTCAGT-A--ATC-ATCAATAAGATACTTAACAAACAT-T-GACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430968" ref_strand="+" ref_description="SGN-E430968 [STM-54-N21]">
      <seq>aacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgtcgtagccttcagcatctattgtgtcggcgaatttgcctataacaaaatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattctatatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtttaagaactgggatgactatacagttcagtcgtgttttttctcagtaatcatcaataagatacttgacaaacatggacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttactatgtattgtcctcgattttgtggttttctaataaatctactattccataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31835" stop="28231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31535" g_stop="31261" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28544" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="434" r_length="159" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="487"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E430968" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31535" e_stop="31261"/>
          <exon e_start="28709" e_stop="28544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTAT</genome_strand>
        <mrna_strand>AACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTCGTAGCCTTCAGCATCTATTGTGTCGGCGAATTTGCCTATAACAAAATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCTATATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTTTAAGAACTGGGATGACTATACAGTTCAGTCGTG-TTTTTTCTCAGTAATCAT----CAATAAGATACTTGACAAACATG--GACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463008" ref_strand="+" ref_description="SGN-E463008 [cPRO-13-G20]">
      <seq>aacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgtcgtagccttcagcatctattgtgtcggcgaatttgcctataacaaaatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattctatatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtttaagaactgggatgactatacagttcagtcgtgttttttctcagtaatcatcaataagatacttgacaaacatggacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttactatgtattgtcctcgattttgtggttttctaataaatctactattccataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31835" stop="28231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31535" g_stop="31261" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28544" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="434" r_length="159" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="487"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E463008" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31535" e_stop="31261"/>
          <exon e_start="28709" e_stop="28544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTAT</genome_strand>
        <mrna_strand>AACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTCGTAGCCTTCAGCATCTATTGTGTCGGCGAATTTGCCTATAACAAAATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCTATATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTTTAAGAACTGGGATGACTATACAGTTCAGTCGTG-TTTTTTCTCAGTAATCAT----CAATAAGATACTTGACAAACATG--GACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733589" ref_strand="+" ref_description="SGN-E733589 [LB10BF11]">
      <seq>attaatttgggtgaaaatcaagaagaggaagaagaacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaataagatacttaacaaacatgtccacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgctttactatttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31869" stop="28245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31569" g_stop="31261" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28546" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="473" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="494"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E733589" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31569" e_stop="31261"/>
          <exon e_start="28709" e_stop="28546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTTGGGTGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTT</genome_strand>
        <mrna_strand>ATTAATTTGGGTGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404711" ref_strand="+" ref_description="SGN-E404711 [PPC-15-C15]">
      <seq>ggaagccattgggaaccaccggagagtttttcaagagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgacacgctttccctggtcttggcatcgctgttgtagccttcagcatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgtttctcactctcactgagattcgatatgggtcgggctggtagtgaaccccatttgtctcttttggtgaggtggtagtttaagaactgggatgactatacagttcagtcgtgttttttctcagtaatcatcaataagatacttaacaaacatggacatgttgcctcaatttttgtgagacttgtgttgtaacaagattaatgagcagtttgctttactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31819" stop="28249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31519" g_stop="31261" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28550" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="412" r_length="153" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="413" polyA_stop="427"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E404711" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31519" e_stop="31261"/>
          <exon e_start="28709" e_stop="28550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACT</genome_strand>
        <mrna_strand>GGAAGCCATTGGGAACCACCGGAGAGTTTTTCAAGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGACACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGCATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGTTTCTCACTCTCACTGAGATTCGATATGGGTCGGGCTGGTAGTGAACCCCATTTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTTTAAGAACTGGGATGACTATACAGTTCAGTCGTG-TTTTTTCTCAGT-A--ATC-ATCAATAAGATACTTAACAAACATG--GACATGTTGCCTCAATTTTTGTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732642" ref_strand="+" ref_description="SGN-E732642 [LB02CH12]">
      <seq>agaagaggaagaagaacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaataagatacttaacaaacatgtccacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagcagtttgcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31849" stop="28252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31549" g_stop="31261" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28554" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="445" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="466"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E732642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31549" e_stop="31261"/>
          <exon e_start="28709" e_stop="28554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTT</genome_strand>
        <mrna_strand>AGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279292" ref_strand="-" ref_description="SGN-E279292 [cLEL-4-D13](-)">
      <seq>gcacgagacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaataagatacttaacaaacatgtccacatgttgcctcaatttttttgagacttgtgttgtaacaagattaatgagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31843" stop="28262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31542" g_stop="31261" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28562" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="429" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E279292" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279292" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31542" e_stop="31261"/>
          <exon e_start="28709" e_stop="28562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCA</genome_strand>
        <mrna_strand>GCACGAGA-CAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277245" ref_strand="-" ref_description="SGN-E277245 [cLEL-3-E6](-)">
      <seq>gcacgagacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgcttctcactctcactgagattcgaaatgggtcgtgcttgtagtgaaccccaattgtctcttttggtgaggtggtagtgctacaactgggatgactatacagttcagtcgtgtttttttctcagtaatcatcaatcaataagatacttaacaaacatgtccacatgttgcctcaatttttttgagacttgtgttgtaacaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31843" stop="28271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31542" g_stop="31261" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28571" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="420" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E277245" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277245" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31542" e_stop="31261"/>
          <exon e_start="28709" e_stop="28571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCACTTTTTTTTGTTTGTATAATCCTATGTTAAGAAATGTCTTTGCTGATACTGGATAGATGCTTGATTAAATTTGGGTGGGTTGGTGTTTCCTGAAGTGGTGTAGCCTCCCCCAGACTCCTCCTTCTAAGCCCCATAGCTATGCCAATTGTGTTTTTTCTCATCGAGGTGTATAGATTATACTACAATGATTGAATCTAGTGCCTTCTTTTGATATGTTCATATCAACTTTGAGTTCTTTTGAGTACCTTGTCAAAAATTAAACTGTGAGTTCTCTTGGGTCTCTACTTGTTTCATTGTCAGTTTTGTCTTATACTATGTGTTGAAGGTATCCAATCTGTACCTTAAGCAGGACCATCAATTTTAGTATTGATCATACTACAATCATCTCATTAGGTACACCAGTTTTCACTTGTCCTTTATCTCACCTGACTGTTGGATGGTTGCTTTTTGTGCAATCAGAGTTTATATGCTCAGGGGTATAGATGTGTCCATTTCATAAAAGTGTTTGCTTCTTGTGCAATCAGAGTTGTTGTGCTCAAATGGCTAGATGTCCCCTGTCATAAAATTGAGGATGTCTTCTCCTATGCAAAGTAATGTCTCTGCCTGTGTCTTTGATTTGATTGGTGTATGTGTCAAGTGTCCAGTGTGTGCTATTACTTCCTTTGAGCTCTCTGTATTTTGATTCCTGTTGTACTCTTTGCAAAATTCTTAAAATAATGCCTTTTCAATGATTTTGCATCAATATTGAGTCCTCTCGAATTTCTTTCATTGTTTGTTGTTATATATTTTAATACACATGTTTTGAAGGATTCTGGGTACGTCCTTAAAGAGACAAAAATAAGGAAAATGCCAATTGCTGTACACAATAATAGAACCTATCCAACTCCCCCATTAATTCGCTTTGTGTCTTGTCTTCTGATTAACTCAGTAGTTGTTAGTTGCTGCATGTTGCAACAATTATCAAAGTTGCAACAACTTACTGAAGTTATTGGATTTTACTGAAAAAACTTGGGTGCTTTTAAAAACACCTGCCCAGTAAAAACAACTTGAATAGCTGCTCGTAAAGAAAAGACTTATATGCCACCCTTAATTAAAGGACGTTAGAAACAAGATGTGAGGAGCATATGCCTTGTAACTTCTATATCTTATTGCACAATTATGTTAGATAAATGTGGGTTGATCTCCTTTACTTGTGCTACTTATCAACTTAATTTATTTGGGAACAATATGTTACTGCTTTATTACTGGAATGTTCAGGTTTGTGTATTCAATCATCCCTACTATGAGTCTGGCATTGTTGCCACTTGCCGCTCCTACTTAACTAACACGTTATACTAATAGAAACAAGGGTCCTTTTGATCAAGGCCTAAGGGTAACATTGGAGTCTTTTATTTGAGGAGATGTGACTCAAATTATTTTTATCGGGTAGGGATGACACTTTTGAAACTAGCGTTAATGACACTAATTTTAGAAGCCCCCAAGTGTACCTTGTTTATAGTGTTATGGGATTGATAGGACATCTCCTTAATGCTATGACCTTTTAATACTGAAATACTCACATTCTCAGCCTATAACCTTTTCTAGGTGCACCTTGTTTACTCGGTTTATTTGGTCTGCTCCTATAAATTTTTCATATGAAAGATTTGGAAGATGCAGTTAACTTTTGCTGGGTTGCATATTGTTTGAGAGTTGCTGCAAAGTTTCCATTAATTAAATGACACCTAAACGCTGTCTCATTCAATTCTGTTGTACTACATACCCAATGTAATATCGTAAGTGGGGTCTGGGGAGGGGGGGTGTGTACTCTACCTTGCCCTTATCTTGTGAAGGCAGAGAGACTTTTCCGTAAGACCCTTGGCTCAACAACATACAATATAAAGATGTCACATCATGCTAAAATAAAGGAGAAGGGAACAATAGCAACAGCATATAATACGGTGGAAACATGTAATAATAAAATCGAAGAACAAGATAATGGGTGAGTAATAATAGCAATATTGATATGGGAAACTGGACGACGTTTGACTACCTACTAACCTTCTATCCTAATGAACAACATAGAAAGGGAAGAGAGATTTACAGTATATCTTTGTCTCCAGATAAGTCCCTCGACTAGTTTGGCTAGGTAGTGATCTTCTTTTGAGGCAGCAGGAGATTGGGAGGGAGAAAAAACCTGTTTTTAAAAAAAAGCAATACCTATTAACGTGAGCATTTAATTTTTGACAAATAAGATTTAGGTAGATGAGATTGCTTGCCTATGCTGCTAATTTGGAATATTTTGTATCTCATCGTACTCGTCCACTGTCCAGCAGTGTTGTTTCTATTTGGTAAATTGGCGGCAGAATTTGCAAATTGAAAACTGACTTACGGTGCTTGTTGTGCAGGTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGAT</genome_strand>
        <mrna_strand>GCACGAGA-CAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E580186" ref_strand="+" ref_description="SGN-E580186 [5429]">
      <seq>tgaaaatcaagaagaggaagaagaacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgacacgctttccctggtcttggcatcgctgttgtagccttcagcatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgtttctcactctcactgagattctatatgggtcgtgcttgtagtgaacctcaattgtctcttttggtacgactcctttctgattttgtgattctttattataccaaccaagtggttgaagtctgtgttttgtggaatacaatttgatatgctttaatgaggtggggtttgtgaattttcttaattttatgagatgggtctccttgatatgctaatgatccgaatggggggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31858" stop="30794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31558" g_stop="31094" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E580186" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31558" e_stop="31094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAAT-GGGGGTCA</genome_strand>
        <mrna_strand>TGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGACACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGCATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGTTTCTCACTCTCACTGAGATTCTATATGGGTCGTGCTTGTAGTGAACCTCAATTGTCTCTTTTGGTACGACTCCTTTCTGATTTTGTGATTCTTTATTATACCAACCAAGTGGTTGAAGTCTGTGTTTTGTGGAATACAATTTGATATGCTTTAATGAGGTGGGGTTTGTGAATTTTCTTAATTTTATGAGATGGGTCTCCTTGATATGCTAATGATCCGAATGGGGGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E603889" ref_strand="+" ref_description="SGN-E603889 [67078]">
      <seq>aagaagaacagatcgaaaatggggaagccattgggaaccaccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgacacgctttccctggtcttggcatcgctgttgtagccttcagcatctattgtgtcggcgaatttgcctataacaagatgtctactccttctcactccacctcttccgccgctgtttctcactctcactgagattcgatatgggtcgggctggtagtgaaccccatttgtctcttttggtgaggtggtagtttaagaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31841" stop="30956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31541" g_stop="31261" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E603889" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31541" e_stop="31261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG</genome_strand>
        <mrna_strand>AAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGACACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGCATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGTTTCTCACTCTCACTGAGATTCGATATGGGTCGGGCTGGTAGTGAACCCCATTTGTCTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296089" ref_strand="+" ref_description="SGN-E296089 [cLET-24-M19]">
      <seq>aagaagaggaagaagaacagatcgaaaatggggaagccattgggaaccaccggagagtttttcatgagatgggacgagcggaggaagcatcctatgttgtgcaatcagttccgccacgctttccctggtcttggcatcgctgttgtagccttcagtatctattgtgtccgcgaatttgcctataacaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31850" stop="31060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31550" g_stop="31360" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E296089" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31550" e_stop="31360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGAT</genome_strand>
        <mrna_strand>AAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCATGAGATGGGACGAGCGGAGGAAGCATCCTATGTTGTGCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCCGCGAATTTGCCTATAACAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560913" ref_strand="+" ref_description="SGN-E560913 [20641]">
      <seq>gacagatcgaaaatggcggaagcccattgggaaccacccggagagtttttcaggagaagggacgagtggaggaagcatcctatgttgtccaatcagttccgacacgctttccctggtcttggcatcgctgttgtagccttcagcatctattgtgtcggcgaatttgcctataacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="31834" stop="31063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31535" g_stop="31363" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E560913" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31535" e_stop="31363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGATCGAAAATGG-GGAAG-CCATTGGGAACCA-CCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAA</genome_strand>
        <mrna_strand>GACAGATCGAAAATGGCGGAAGCCCATTGGGAACCACCCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGACACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGCATCTATTGTGTCGGCGAATTTGCCTATAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312837" ref_strand="+" ref_description="SGN-E312837 [cTOA-8-A2]">
      <seq>tctattttcattcattttcagttttctctctttgaactgagggagtaaagtacaacaacatgtctactcttcaattgggtatcatcctttcatcttcctctccaatgttcttggcaagtaattctcatatacccaagaatgtattgccttctatctcacttttccccacctactttgtaaagaatccttgcagaagaacctacagtcatgctgacccaagaaggggtcttttcaagatttcttgttcttccacctcagaaaatcttaacaaggagtcagatgtagtggtggtggaggagaaaagtgtttctgtgattcttcttgctggaggaaaggggaaaagaatgggtgcaagcatgccaaagcagtatcttccacttctaggccagccaattgcattgtacagtttctacactttctccaagatgcctcaagtgaaggaaattattgttgtatgtgatccttcttatcaagacatttttgaagatgccaaagagtatatccaagtcgacttaaaatttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="35145" stop="37311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35445" g_stop="35716" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35717" i_stop="35798" i_length="82">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35799" g_stop="35876" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="350" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35877" i_stop="36110" i_length="234">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36111" g_stop="36166" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="406" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36167" i_stop="36730" i_length="564">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36731" g_stop="36810" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="486" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36811" i_stop="36972" i_length="162">
            <donor d_prob="0.578" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36973" g_stop="37011" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="525" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E312837" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35445" e_stop="35716"/>
          <exon e_start="35799" e_stop="35876"/>
          <exon e_start="36111" e_stop="36166"/>
          <exon e_start="36731" e_stop="36810"/>
          <exon e_start="36973" e_stop="37011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTTTCATTCATTTTCAGTTTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAGGTTATGTGTCATGTGATGTAAGATCTTCTATTTTTTCAGTGAAAAATTGAATCTTGAACATTGGCATTTTTTATATCGTCAGGAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGTGTAAGTTAAATATGAGTTTAAGAGGGAAATAACTTATTTTGTTGTTTCCTATTACTTGTAATTCTATTTTCATTGTTTGTATTGTTTGGTTCATCTAAAATTTGATGCAGAAGGTCTCTAAAAACTGTTCTGTTTTTCAATTCTTTGCATCTTTCATTCCCATATCTTCAATATCTACATTGTTAAAACTTTCTTCTGTCAGATGATGATGTTGTTATGTTTTGTTTGGAATAGGCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAGGTAAAAGTAATGGTCAACTTGATTCAATTATGACTAAACCTATCTAAAACAAATTTCCTAGTGCTAGACAGTAGACATAAGTTACATCTTGATACTTCTATAATTTATGCTGTGGCGAGAAATTGTTAAGTTTGCACGAATTCACCTTGGAAAATTGATGAATATATCGAAGAAGGGTTTAGCTAATAACGCCACGAAATTGGTAGTCATTAGCAGGACCTCTTTTCTTCGATTGAGTTGGTTTGATATTTGACATAATCTGTGTGAGACTGGTGCAAGTCAAGATGGGTAATCAGAAGAGAGATGGTCTACTGCAAGTCTTGAACACTGATGCTATTGAGTTCTGTCTATCAATTCTCAGAAAGTTTTCTGAACTGTTAGACGACCAAACCAAGGACCCCCATGTTTATTTTACACAAGTATTGGGCACCACAAAAACTAAATCCATTTAATGTAGAAATTTAACAGTTTTGGAACCACAGTTTGGAGAGAATCTTTTGTATCTACTCAACCAGTTCGATCACATATTTGACTTTGTGGTGACAATTTGTTGGATTGTTGCAGTTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAGGTATAGAGTTAAAATGTCTTATAGTGTGTGTGTGCAGCCAATAGAAAAATGTCCAAGAAAGCAATGAATGTGAACTTACCTTCCTTATTCTGATTGCAATATCTATAGGAATTTGTGCAAACACTAAGGTAATGATATAATAATTCTTCATTTATTTTTTAGATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCAT</genome_strand>
        <mrna_strand>TCTATTTTCATTCATTTTCAGTTTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAG..................................................................................GAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGT..........................................................................................................................................................................................................................................GCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTACACTTTCTCCAAGATGCCTCAAGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAG..................................................................................................................................................................ATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341707" ref_strand="+" ref_description="SGN-E341707 [cTOF-9-K20]">
      <seq>ttcattcattttcagttttctctctttgaactgagggagtaaagtacaacaacatgtctactcttcaattgggtatcatcctttcatcttcctctccaatgttcttggcaagtaattctcatatacccaagaatgtattgccttctatctcacttttccccacctactttgtaaagaatccttgcagaagaacctacagtcatgctgacccaagaaggggtcttttcaagatttcttgttcttccacctcagaaaatcttaacaaggagtcagatgtagtggtggtggaggagaaaagtgtttctgtgattcttcttgctggaggaaaggggaaaagaatgggtgcaagcatgccaaagcagtatcttccacttctaggccagccaattgcattgtacagtttctacactttctccaagatgcctcaggtgaaggaaattattgttgtatgtgatccttcttatcaagacatttttgaagatgccaaagagtatatccaagtcgacttaaaatttgcattgcctgngaaggaaagacaagattctgtatacagcggacttcaggaagttgattcaaactccaaactcgcatgcatccatgactctgcaagacctcttgtacaaattgaagatgtagaaaaagtcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="35151" stop="38189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35451" g_stop="35716" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35717" i_stop="35798" i_length="82">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35799" g_stop="35876" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="344" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35877" i_stop="36110" i_length="234">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36111" g_stop="36166" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="400" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36167" i_stop="36730" i_length="564">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36731" g_stop="36810" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="480" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36811" i_stop="36972" i_length="162">
            <donor d_prob="0.578" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36973" g_stop="37055" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="563" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37056" i_stop="37809" i_length="754">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37810" g_stop="37887" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="641" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37888" i_stop="38128" i_length="241">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38129" g_stop="38135" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="648" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E341707" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35451" e_stop="35716"/>
          <exon e_start="35799" e_stop="35876"/>
          <exon e_start="36111" e_stop="36166"/>
          <exon e_start="36731" e_stop="36810"/>
          <exon e_start="36973" e_stop="37055"/>
          <exon e_start="37810" e_stop="37887"/>
          <exon e_start="38129" e_stop="38135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCATTTTCAGTTTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAGGTTATGTGTCATGTGATGTAAGATCTTCTATTTTTTCAGTGAAAAATTGAATCTTGAACATTGGCATTTTTTATATCGTCAGGAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGTGTAAGTTAAATATGAGTTTAAGAGGGAAATAACTTATTTTGTTGTTTCCTATTACTTGTAATTCTATTTTCATTGTTTGTATTGTTTGGTTCATCTAAAATTTGATGCAGAAGGTCTCTAAAAACTGTTCTGTTTTTCAATTCTTTGCATCTTTCATTCCCATATCTTCAATATCTACATTGTTAAAACTTTCTTCTGTCAGATGATGATGTTGTTATGTTTTGTTTGGAATAGGCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAGGTAAAAGTAATGGTCAACTTGATTCAATTATGACTAAACCTATCTAAAACAAATTTCCTAGTGCTAGACAGTAGACATAAGTTACATCTTGATACTTCTATAATTTATGCTGTGGCGAGAAATTGTTAAGTTTGCACGAATTCACCTTGGAAAATTGATGAATATATCGAAGAAGGGTTTAGCTAATAACGCCACGAAATTGGTAGTCATTAGCAGGACCTCTTTTCTTCGATTGAGTTGGTTTGATATTTGACATAATCTGTGTGAGACTGGTGCAAGTCAAGATGGGTAATCAGAAGAGAGATGGTCTACTGCAAGTCTTGAACACTGATGCTATTGAGTTCTGTCTATCAATTCTCAGAAAGTTTTCTGAACTGTTAGACGACCAAACCAAGGACCCCCATGTTTATTTTACACAAGTATTGGGCACCACAAAAACTAAATCCATTTAATGTAGAAATTTAACAGTTTTGGAACCACAGTTTGGAGAGAATCTTTTGTATCTACTCAACCAGTTCGATCACATATTTGACTTTGTGGTGACAATTTGTTGGATTGTTGCAGTTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAGGTATAGAGTTAAAATGTCTTATAGTGTGTGTGTGCAGCCAATAGAAAAATGTCCAAGAAAGCAATGAATGTGAACTTACCTTCCTTATTCTGATTGCAATATCTATAGGAATTTGTGCAAACACTAAGGTAATGATATAATAATTCTTCATTTATTTTTTAGATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAGGTACGTGCTGTATGCTAACTCAAATTGTATAGGTATCTCACTTCCAATTTTCAAAAAACAAAGTTGGTTATGTTCGAGAACTTAATTTTTCTATAATTTACCAAGAGCCTTTTTTCAGCCTTCATTCTCCAGAATATGTAGTTAGCCAAATATTCAGTCCTATCATGATTGGTTATACTTAGTAGATCACTGGGCTGATGTTCAGTAAACTTGGGTTCTGTTGCTGATTTCATACAGTATACTTCATGTAGGAAAAGTTATTAACTAGTTATCTAGTTGTTCCTGCTTCATTTGGTTCGTCTAAGGTGCTAAAACTGTTAGGCTCTTATGTGATCAGTCCTCGCTGCTCAGTTTTTGTCCTTAAGATTCTTTTATCTCTTTTCTTATCCAAATAAGAGTGATAAGTTGATCTCATTCCAAATGCTATTGAAATGTTTGACTTTTTAGGGAGAACAACAAGTGGCTAAAAGCTTAAACTCAAGAGTTACCTTTTGCATTGCATTTCATCTTTCTTTGGTGATTTGGATGTTAACATGTGATCTTGAGTTATTATTGTTCATTTAATTTCTGGTCAAATGTCTTGCATTCACTCCATAGTTAAAGATGAACTTGTGAAATATCTTCATCTTATTTGGTTCCACATATTGTTCAGATTTGTGTCGTTATTATGTTATGCAGTAAGACAATGTTATGGCCATGGTATTTCTCAGTAGTGATTGTGGTTTTTAGAAAGTGTTGATGCTTTGCATGCCAGGAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAGGTTTGATCATTGCATAATCTCCTCCTCCTCCTTTAGTCTCTTGGCTTTGGCAAGAGATTTCTGGTATTGTGGGAAGTACTCCTGCCGAATATAACATGAATTCTGGAGATATCCATCTTCTTTATCTTTAATTCTGCATCACATTATATGCAGATCGTTGACATTTTATAAAGGTCATATGTATGTTTAAGATTCTGAAGGACAAATCTTCCTTTACTTTTTCCAAGAATCTTCTCTGCAGGTCCTGA</genome_strand>
        <mrna_strand>TTCATTCATTTTCAGTTTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAG..................................................................................GAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGT..........................................................................................................................................................................................................................................GCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAG..................................................................................................................................................................ATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGNGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAA.................................................................................................................................................................................................................................................GTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315048" ref_strand="+" ref_description="SGN-E315048 [cTOB-4-O22]">
      <seq>ttcattttcagttttctctctttgaactgagggagtaaagtacaacaacatgtctactcttcaattgggtatcatcctttcatcttcctctccaaagttcttggcaagtaattctcatatacccaagaatgtattgccttctatctcacttttccccacctactttgtaaagaatccttgcagaaaaacctacagtcatgctgacccaagaaggggtcttttcaagatttcttgttcttccacctcagaaaatcttaacaaagagtcaaatgtagtggtggtggaggagaaaagtgtttctgtgattcttcttgctggaggaaaggggaaaagaatgggtgcaagcatgccaaagcagtatcttccacttctaggccagccaattgcattgtacagtttctacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="35155" stop="36468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35455" g_stop="35716" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35717" i_stop="35798" i_length="82">
            <donor d_prob="0.822" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35799" g_stop="35876" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="340" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35877" i_stop="36110" i_length="234">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36111" g_stop="36166" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="396" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E315048" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35455" e_stop="35716"/>
          <exon e_start="35799" e_stop="35876"/>
          <exon e_start="36111" e_stop="36166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTTCAGTTTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAGGTTATGTGTCATGTGATGTAAGATCTTCTATTTTTTCAGTGAAAAATTGAATCTTGAACATTGGCATTTTTTATATCGTCAGGAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGTGTAAGTTAAATATGAGTTTAAGAGGGAAATAACTTATTTTGTTGTTTCCTATTACTTGTAATTCTATTTTCATTGTTTGTATTGTTTGGTTCATCTAAAATTTGATGCAGAAGGTCTCTAAAAACTGTTCTGTTTTTCAATTCTTTGCATCTTTCATTCCCATATCTTCAATATCTACATTGTTAAAACTTTCTTCTGTCAGATGATGATGTTGTTATGTTTTGTTTGGAATAGGCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAG</genome_strand>
        <mrna_strand>TTCATTTTCAGTTTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAAAGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAAAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAA..................................................................................GAGTCAAATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGT..........................................................................................................................................................................................................................................GCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270035" ref_strand="+" ref_description="SGN-E270035 [cLEM-7-A21]">
      <seq>tcattttcagttttctctctttgaactgagggagtaaagtacaacaacatgtctactcttcaattgggtatcatcctttcatcttcctctccaatgttcttggcaagtaattctcatatacccaagaatgtattgccttctatctcacttttccccacctactttgtaaagaatccttgcagaagaacctacagtcatgctgacccaagaaggggtcttttcaagatttcttgttcttccacctcagaaaatcttaacaaggagtcagatgtagtggtggtggaggagaaaagtgtttctgtgattcttcttgctggaggaaaggggaaaagaatgggtgcaagcatgccaaagcagtatcttccacttctaggccagccaattgcattgtacagtttctacactttctccaagatgcctcaggtgaaggaaattattgttgtatgtgatccttcttatcaagacatttttgaagatgccaaagagtatatccaagtcgacttaaaatttgcattgcctgggaaggaaagacaagattctgtatacagcggacttcaggaagttgattcaaactccaaactcgcatgcatccatgactctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="35156" stop="38153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35456" g_stop="35716" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35717" i_stop="35798" i_length="82">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35799" g_stop="35876" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="339" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35877" i_stop="36110" i_length="234">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36111" g_stop="36166" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="395" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36167" i_stop="36730" i_length="564">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36731" g_stop="36810" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="475" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36811" i_stop="36972" i_length="162">
            <donor d_prob="0.578" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36973" g_stop="37055" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="558" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37056" i_stop="37809" i_length="754">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37810" g_stop="37853" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="602" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E270035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35456" e_stop="35716"/>
          <exon e_start="35799" e_stop="35876"/>
          <exon e_start="36111" e_stop="36166"/>
          <exon e_start="36731" e_stop="36810"/>
          <exon e_start="36973" e_stop="37055"/>
          <exon e_start="37810" e_stop="37853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCAGTTTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAGGTTATGTGTCATGTGATGTAAGATCTTCTATTTTTTCAGTGAAAAATTGAATCTTGAACATTGGCATTTTTTATATCGTCAGGAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGTGTAAGTTAAATATGAGTTTAAGAGGGAAATAACTTATTTTGTTGTTTCCTATTACTTGTAATTCTATTTTCATTGTTTGTATTGTTTGGTTCATCTAAAATTTGATGCAGAAGGTCTCTAAAAACTGTTCTGTTTTTCAATTCTTTGCATCTTTCATTCCCATATCTTCAATATCTACATTGTTAAAACTTTCTTCTGTCAGATGATGATGTTGTTATGTTTTGTTTGGAATAGGCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAGGTAAAAGTAATGGTCAACTTGATTCAATTATGACTAAACCTATCTAAAACAAATTTCCTAGTGCTAGACAGTAGACATAAGTTACATCTTGATACTTCTATAATTTATGCTGTGGCGAGAAATTGTTAAGTTTGCACGAATTCACCTTGGAAAATTGATGAATATATCGAAGAAGGGTTTAGCTAATAACGCCACGAAATTGGTAGTCATTAGCAGGACCTCTTTTCTTCGATTGAGTTGGTTTGATATTTGACATAATCTGTGTGAGACTGGTGCAAGTCAAGATGGGTAATCAGAAGAGAGATGGTCTACTGCAAGTCTTGAACACTGATGCTATTGAGTTCTGTCTATCAATTCTCAGAAAGTTTTCTGAACTGTTAGACGACCAAACCAAGGACCCCCATGTTTATTTTACACAAGTATTGGGCACCACAAAAACTAAATCCATTTAATGTAGAAATTTAACAGTTTTGGAACCACAGTTTGGAGAGAATCTTTTGTATCTACTCAACCAGTTCGATCACATATTTGACTTTGTGGTGACAATTTGTTGGATTGTTGCAGTTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAGGTATAGAGTTAAAATGTCTTATAGTGTGTGTGTGCAGCCAATAGAAAAATGTCCAAGAAAGCAATGAATGTGAACTTACCTTCCTTATTCTGATTGCAATATCTATAGGAATTTGTGCAAACACTAAGGTAATGATATAATAATTCTTCATTTATTTTTTAGATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAGGTACGTGCTGTATGCTAACTCAAATTGTATAGGTATCTCACTTCCAATTTTCAAAAAACAAAGTTGGTTATGTTCGAGAACTTAATTTTTCTATAATTTACCAAGAGCCTTTTTTCAGCCTTCATTCTCCAGAATATGTAGTTAGCCAAATATTCAGTCCTATCATGATTGGTTATACTTAGTAGATCACTGGGCTGATGTTCAGTAAACTTGGGTTCTGTTGCTGATTTCATACAGTATACTTCATGTAGGAAAAGTTATTAACTAGTTATCTAGTTGTTCCTGCTTCATTTGGTTCGTCTAAGGTGCTAAAACTGTTAGGCTCTTATGTGATCAGTCCTCGCTGCTCAGTTTTTGTCCTTAAGATTCTTTTATCTCTTTTCTTATCCAAATAAGAGTGATAAGTTGATCTCATTCCAAATGCTATTGAAATGTTTGACTTTTTAGGGAGAACAACAAGTGGCTAAAAGCTTAAACTCAAGAGTTACCTTTTGCATTGCATTTCATCTTTCTTTGGTGATTTGGATGTTAACATGTGATCTTGAGTTATTATTGTTCATTTAATTTCTGGTCAAATGTCTTGCATTCACTCCATAGTTAAAGATGAACTTGTGAAATATCTTCATCTTATTTGGTTCCACATATTGTTCAGATTTGTGTCGTTATTATGTTATGCAGTAAGACAATGTTATGGCCATGGTATTTCTCAGTAGTGATTGTGGTTTTTAGAAAGTGTTGATGCTTTGCATGCCAGGAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGC</genome_strand>
        <mrna_strand>TCATTTTCAGTTTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAG..................................................................................GAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGT..........................................................................................................................................................................................................................................GCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAG..................................................................................................................................................................ATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691415" ref_strand="+" ref_description="SGN-E691415 [LH_Ea06A21]">
      <seq>cccgtttctattttacttcattcattttcagttctctctttgaactgagggagtaaagtacaacaacatgtctactcttcaattgggtatcatcctttcatcttcctctccaatgttcttggcaagtaattctcatatacccaagaatgtattgccttctatctcaattttccccacctactttgtaaagaatccttgcagaagaacctacagtcatgctgacccaagaaggggtcttttcaagatttcttgttcttccactttagaaaatcttaacaaggagtcagatgtagtggtggtggaggagaaaagtgtttctgtgattcttcttgctggaggaaaggggaaaagaatgggtgcaagcatgccaaagcagtatcttccacttctaggccagccaattgcattgtacagtttctacactttctccaagatgcctcaggtgaaggaaattattgttgtatgtgatccttcttatcaagacatttttgaagatgccaaagagtatatccaagtcgacttaaaatttgcattgcctgggaaggaaagacaagattctgtatacagcggacttcaggaagttgattcaaactccaaactcgcatgcatccatgactctgcaagacctcttgtacaaattgaagatgtagaaaaggtcctgaaggatggttggctggttggagcagcagttcttggcgttcctgccaaagctacaatcaaagaggcaaacagtgaatctttcgttgtgaagactcttgacaggaaaacactttgggaaatgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="35151" stop="39473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35466" g_stop="35716" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="280" r_length="251" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35717" i_stop="35798" i_length="82">
            <donor d_prob="0.822" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35799" g_stop="35876" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="358" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35877" i_stop="36110" i_length="234">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36111" g_stop="36166" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="414" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36167" i_stop="36730" i_length="564">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36731" g_stop="36810" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="494" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36811" i_stop="36972" i_length="162">
            <donor d_prob="0.578" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36973" g_stop="37055" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="577" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37056" i_stop="37809" i_length="754">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37810" g_stop="37887" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="655" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37888" i_stop="38128" i_length="241">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38129" g_stop="38197" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="724" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38198" i_stop="39113" i_length="916">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39114" g_stop="39173" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="784" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E691415" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35466" e_stop="35716"/>
          <exon e_start="35799" e_stop="35876"/>
          <exon e_start="36111" e_stop="36166"/>
          <exon e_start="36731" e_stop="36810"/>
          <exon e_start="36973" e_stop="37055"/>
          <exon e_start="37810" e_stop="37887"/>
          <exon e_start="38129" e_stop="38197"/>
          <exon e_start="39114" e_stop="39173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAGGTTATGTGTCATGTGATGTAAGATCTTCTATTTTTTCAGTGAAAAATTGAATCTTGAACATTGGCATTTTTTATATCGTCAGGAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGTGTAAGTTAAATATGAGTTTAAGAGGGAAATAACTTATTTTGTTGTTTCCTATTACTTGTAATTCTATTTTCATTGTTTGTATTGTTTGGTTCATCTAAAATTTGATGCAGAAGGTCTCTAAAAACTGTTCTGTTTTTCAATTCTTTGCATCTTTCATTCCCATATCTTCAATATCTACATTGTTAAAACTTTCTTCTGTCAGATGATGATGTTGTTATGTTTTGTTTGGAATAGGCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAGGTAAAAGTAATGGTCAACTTGATTCAATTATGACTAAACCTATCTAAAACAAATTTCCTAGTGCTAGACAGTAGACATAAGTTACATCTTGATACTTCTATAATTTATGCTGTGGCGAGAAATTGTTAAGTTTGCACGAATTCACCTTGGAAAATTGATGAATATATCGAAGAAGGGTTTAGCTAATAACGCCACGAAATTGGTAGTCATTAGCAGGACCTCTTTTCTTCGATTGAGTTGGTTTGATATTTGACATAATCTGTGTGAGACTGGTGCAAGTCAAGATGGGTAATCAGAAGAGAGATGGTCTACTGCAAGTCTTGAACACTGATGCTATTGAGTTCTGTCTATCAATTCTCAGAAAGTTTTCTGAACTGTTAGACGACCAAACCAAGGACCCCCATGTTTATTTTACACAAGTATTGGGCACCACAAAAACTAAATCCATTTAATGTAGAAATTTAACAGTTTTGGAACCACAGTTTGGAGAGAATCTTTTGTATCTACTCAACCAGTTCGATCACATATTTGACTTTGTGGTGACAATTTGTTGGATTGTTGCAGTTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAGGTATAGAGTTAAAATGTCTTATAGTGTGTGTGTGCAGCCAATAGAAAAATGTCCAAGAAAGCAATGAATGTGAACTTACCTTCCTTATTCTGATTGCAATATCTATAGGAATTTGTGCAAACACTAAGGTAATGATATAATAATTCTTCATTTATTTTTTAGATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAGGTACGTGCTGTATGCTAACTCAAATTGTATAGGTATCTCACTTCCAATTTTCAAAAAACAAAGTTGGTTATGTTCGAGAACTTAATTTTTCTATAATTTACCAAGAGCCTTTTTTCAGCCTTCATTCTCCAGAATATGTAGTTAGCCAAATATTCAGTCCTATCATGATTGGTTATACTTAGTAGATCACTGGGCTGATGTTCAGTAAACTTGGGTTCTGTTGCTGATTTCATACAGTATACTTCATGTAGGAAAAGTTATTAACTAGTTATCTAGTTGTTCCTGCTTCATTTGGTTCGTCTAAGGTGCTAAAACTGTTAGGCTCTTATGTGATCAGTCCTCGCTGCTCAGTTTTTGTCCTTAAGATTCTTTTATCTCTTTTCTTATCCAAATAAGAGTGATAAGTTGATCTCATTCCAAATGCTATTGAAATGTTTGACTTTTTAGGGAGAACAACAAGTGGCTAAAAGCTTAAACTCAAGAGTTACCTTTTGCATTGCATTTCATCTTTCTTTGGTGATTTGGATGTTAACATGTGATCTTGAGTTATTATTGTTCATTTAATTTCTGGTCAAATGTCTTGCATTCACTCCATAGTTAAAGATGAACTTGTGAAATATCTTCATCTTATTTGGTTCCACATATTGTTCAGATTTGTGTCGTTATTATGTTATGCAGTAAGACAATGTTATGGCCATGGTATTTCTCAGTAGTGATTGTGGTTTTTAGAAAGTGTTGATGCTTTGCATGCCAGGAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAGGTTTGATCATTGCATAATCTCCTCCTCCTCCTTTAGTCTCTTGGCTTTGGCAAGAGATTTCTGGTATTGTGGGAAGTACTCCTGCCGAATATAACATGAATTCTGGAGATATCCATCTTCTTTATCTTTAATTCTGCATCACATTATATGCAGATCGTTGACATTTTATAAAGGTCATATGTATGTTTAAGATTCTGAAGGACAAATCTTCCTTTACTTTTTCCAAGAATCTTCTCTGCAGGTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAGGTAGCTCTTAATTATTGCTAGTATCTGATTTGTAATAAAATATGAAGCTTCAGGTGGCTGACCATCTCCCATGAGAGAATGAAATGGTAGCAAATTGAAGCATGTTCTGAGTTTTATGTAGCCTTTTTGTAAGTAGATATTCAAGCTTATAGTTTCCTGTTAGAGACATCAACTTATATTTCTAAAGCAACTCCCGTACAAGGAAGGACAATGTACTATGAGACTTGCTCTTTTTGCTATCTTGGCAGGCTAATTGCTCTAGGCTTTTACTGTGGAACTATTAGGATGTCGTGTAACCTATGTTCTATTTCATCTATATCGATATTGCATAATCTCCTAAACATGTTTCAGGTGCTTCTAAGTTGTAGCATGGTACTATTAAGTCTCAATTTTGGTCAATAGATTTTCACTTTTATTATTTACTAGTATGCATTATCCTATTATCACCAAATGGTTATATCTGTTTGATATTTGTTTAATAAGAAGTATTTTTAGGCTGTCCTACAGTTGCTGTCTAGTATTATTTCTCCTTTAATTTCTCTTGTTGACAGAAATTAACGTTGGCATTATAGTTCTATTAAACATTTGGAGGGAGATAAAATGCATACTTATTCAGTTATATAATATGAAAAGTAAGACCACATTTTATAATACCCTGCAGGACCTTCATTATCCGTGCTTTAAATATGATGGCCAGATAAAATTAAGGCATTTGCTAGGAAATTTAAATATAGCCCTCTATCTCTCACCTCCCCTATTTGACCTGACTGGCATGAATGTAAAACTGTTGACAGGAATGTTAATAAAGCCTCTATTTAAGTGCATTGGCATCGCACAGAAGGTCTCCCTCCTTATATTATATCACTTTTACTTGGTTCTGATTGGTCTATTAATTTTCATGTCAATTCTGGTGCAGGCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAG</genome_strand>
        <mrna_strand>AGTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCAATTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACTTTAGAAAATCTTAACAAG..................................................................................GAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGT..........................................................................................................................................................................................................................................GCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAG..................................................................................................................................................................ATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAG.................................................................................................................................................................................................................................................GTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGCGTTCCTGCCAAAGCTACAATCAAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257493" ref_strand="+" ref_description="SGN-E257493 [cLEG-45-A1]">
      <seq>gtacaacaacatgtctactcttcaattgggtatcatcctttcatcttcctctccaatgttcttggcaagtaattctcatatacccaagaatgtattgccttctatctcacttttccccacctactttgtaaagaatccttgcagaagaacctacagtcatgctgacccaagaaggggtcttttcaagatttcttgttcttccacctcagaaaatcttaacaaggagtcagatgtagtggtggtggaggagaaaagtgtttctgtgattcttcttgctggaggaaaggggaaaagaatgggtgcaagcatgccaaagcagtatcttccacttctaggccagccaattgcattgtacagtttctacactttctccaagatgcctcaggtgaaggaaattattgttgtatgtgatccttcttatcaagacatttttgaagatgccaaagagtatatccaagtcgacttaaaatttgcattgcctgggaaggaaagacaagattctgtatacagcggacttcaggaagttgattcaaactccaaactcgcatgcatccatgactctgcaagacctcttgtacaaattgaagatgtagaaaaggtcctgaaggatggttggctggttggagcagcagttcttggtgttcctgccaaagctacaatcaaagaagcaaacagtgaatctttcgttgtgaagactcttgacaggaaaacactttgggaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="35194" stop="39471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35494" g_stop="35716" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35717" i_stop="35798" i_length="82">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35799" g_stop="35876" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="301" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35877" i_stop="36110" i_length="234">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36111" g_stop="36166" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="357" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36167" i_stop="36730" i_length="564">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36731" g_stop="36810" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="437" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36811" i_stop="36972" i_length="162">
            <donor d_prob="0.578" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36973" g_stop="37055" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="520" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37056" i_stop="37809" i_length="754">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37810" g_stop="37887" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="598" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37888" i_stop="38128" i_length="241">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38129" g_stop="38197" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="667" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38198" i_stop="39113" i_length="916">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39114" g_stop="39171" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="725" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E257493" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35494" e_stop="35716"/>
          <exon e_start="35799" e_stop="35876"/>
          <exon e_start="36111" e_stop="36166"/>
          <exon e_start="36731" e_stop="36810"/>
          <exon e_start="36973" e_stop="37055"/>
          <exon e_start="37810" e_stop="37887"/>
          <exon e_start="38129" e_stop="38197"/>
          <exon e_start="39114" e_stop="39171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAGGTTATGTGTCATGTGATGTAAGATCTTCTATTTTTTCAGTGAAAAATTGAATCTTGAACATTGGCATTTTTTATATCGTCAGGAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGTGTAAGTTAAATATGAGTTTAAGAGGGAAATAACTTATTTTGTTGTTTCCTATTACTTGTAATTCTATTTTCATTGTTTGTATTGTTTGGTTCATCTAAAATTTGATGCAGAAGGTCTCTAAAAACTGTTCTGTTTTTCAATTCTTTGCATCTTTCATTCCCATATCTTCAATATCTACATTGTTAAAACTTTCTTCTGTCAGATGATGATGTTGTTATGTTTTGTTTGGAATAGGCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAGGTAAAAGTAATGGTCAACTTGATTCAATTATGACTAAACCTATCTAAAACAAATTTCCTAGTGCTAGACAGTAGACATAAGTTACATCTTGATACTTCTATAATTTATGCTGTGGCGAGAAATTGTTAAGTTTGCACGAATTCACCTTGGAAAATTGATGAATATATCGAAGAAGGGTTTAGCTAATAACGCCACGAAATTGGTAGTCATTAGCAGGACCTCTTTTCTTCGATTGAGTTGGTTTGATATTTGACATAATCTGTGTGAGACTGGTGCAAGTCAAGATGGGTAATCAGAAGAGAGATGGTCTACTGCAAGTCTTGAACACTGATGCTATTGAGTTCTGTCTATCAATTCTCAGAAAGTTTTCTGAACTGTTAGACGACCAAACCAAGGACCCCCATGTTTATTTTACACAAGTATTGGGCACCACAAAAACTAAATCCATTTAATGTAGAAATTTAACAGTTTTGGAACCACAGTTTGGAGAGAATCTTTTGTATCTACTCAACCAGTTCGATCACATATTTGACTTTGTGGTGACAATTTGTTGGATTGTTGCAGTTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAGGTATAGAGTTAAAATGTCTTATAGTGTGTGTGTGCAGCCAATAGAAAAATGTCCAAGAAAGCAATGAATGTGAACTTACCTTCCTTATTCTGATTGCAATATCTATAGGAATTTGTGCAAACACTAAGGTAATGATATAATAATTCTTCATTTATTTTTTAGATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAGGTACGTGCTGTATGCTAACTCAAATTGTATAGGTATCTCACTTCCAATTTTCAAAAAACAAAGTTGGTTATGTTCGAGAACTTAATTTTTCTATAATTTACCAAGAGCCTTTTTTCAGCCTTCATTCTCCAGAATATGTAGTTAGCCAAATATTCAGTCCTATCATGATTGGTTATACTTAGTAGATCACTGGGCTGATGTTCAGTAAACTTGGGTTCTGTTGCTGATTTCATACAGTATACTTCATGTAGGAAAAGTTATTAACTAGTTATCTAGTTGTTCCTGCTTCATTTGGTTCGTCTAAGGTGCTAAAACTGTTAGGCTCTTATGTGATCAGTCCTCGCTGCTCAGTTTTTGTCCTTAAGATTCTTTTATCTCTTTTCTTATCCAAATAAGAGTGATAAGTTGATCTCATTCCAAATGCTATTGAAATGTTTGACTTTTTAGGGAGAACAACAAGTGGCTAAAAGCTTAAACTCAAGAGTTACCTTTTGCATTGCATTTCATCTTTCTTTGGTGATTTGGATGTTAACATGTGATCTTGAGTTATTATTGTTCATTTAATTTCTGGTCAAATGTCTTGCATTCACTCCATAGTTAAAGATGAACTTGTGAAATATCTTCATCTTATTTGGTTCCACATATTGTTCAGATTTGTGTCGTTATTATGTTATGCAGTAAGACAATGTTATGGCCATGGTATTTCTCAGTAGTGATTGTGGTTTTTAGAAAGTGTTGATGCTTTGCATGCCAGGAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAGGTTTGATCATTGCATAATCTCCTCCTCCTCCTTTAGTCTCTTGGCTTTGGCAAGAGATTTCTGGTATTGTGGGAAGTACTCCTGCCGAATATAACATGAATTCTGGAGATATCCATCTTCTTTATCTTTAATTCTGCATCACATTATATGCAGATCGTTGACATTTTATAAAGGTCATATGTATGTTTAAGATTCTGAAGGACAAATCTTCCTTTACTTTTTCCAAGAATCTTCTCTGCAGGTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAGGTAGCTCTTAATTATTGCTAGTATCTGATTTGTAATAAAATATGAAGCTTCAGGTGGCTGACCATCTCCCATGAGAGAATGAAATGGTAGCAAATTGAAGCATGTTCTGAGTTTTATGTAGCCTTTTTGTAAGTAGATATTCAAGCTTATAGTTTCCTGTTAGAGACATCAACTTATATTTCTAAAGCAACTCCCGTACAAGGAAGGACAATGTACTATGAGACTTGCTCTTTTTGCTATCTTGGCAGGCTAATTGCTCTAGGCTTTTACTGTGGAACTATTAGGATGTCGTGTAACCTATGTTCTATTTCATCTATATCGATATTGCATAATCTCCTAAACATGTTTCAGGTGCTTCTAAGTTGTAGCATGGTACTATTAAGTCTCAATTTTGGTCAATAGATTTTCACTTTTATTATTTACTAGTATGCATTATCCTATTATCACCAAATGGTTATATCTGTTTGATATTTGTTTAATAAGAAGTATTTTTAGGCTGTCCTACAGTTGCTGTCTAGTATTATTTCTCCTTTAATTTCTCTTGTTGACAGAAATTAACGTTGGCATTATAGTTCTATTAAACATTTGGAGGGAGATAAAATGCATACTTATTCAGTTATATAATATGAAAAGTAAGACCACATTTTATAATACCCTGCAGGACCTTCATTATCCGTGCTTTAAATATGATGGCCAGATAAAATTAAGGCATTTGCTAGGAAATTTAAATATAGCCCTCTATCTCTCACCTCCCCTATTTGACCTGACTGGCATGAATGTAAAACTGTTGACAGGAATGTTAATAAAGCCTCTATTTAAGTGCATTGGCATCGCACAGAAGGTCTCCCTCCTTATATTATATCACTTTTACTTGGTTCTGATTGGTCTATTAATTTTCATGTCAATTCTGGTGCAGGCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGC</genome_strand>
        <mrna_strand>GTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAG..................................................................................GAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGT..........................................................................................................................................................................................................................................GCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAG..................................................................................................................................................................ATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAG.................................................................................................................................................................................................................................................GTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374674" ref_strand="+" ref_description="SGN-E374674 [TUS-15-P7]">
      <seq>atgtattgccttctatctcacttttccccacctactttgtaaagaatccttgcagaagaacctacagtcatgctgacccaagaaggggtcttttcaagatttcttgttcttccacctcagaaaatcttaacaaggagtcagatgtagtggtggtggaggagaaaagtgtttctgtgattcttcttgctggaggaaaggggaaaagaatgggtgcaagcatgccaaagcagtatcttccacttctaggccagccaattgcattgtacagtttctacactttctccaagatgcctcaggtgaaggaaattattgttgtatgtgatccttcttatcaagacatttttgaagatgccaaagagtatatccaagtcgacttaaaatttgcattgcctgggaaggaaagacaagattctgtatacagcggacttcaggaagttgattcaaactccaaactcgcatgcatccatgactctgcaagacctcttgtacaaattgaagatgtagaaaaggtcctgaaggatggttggctggttggagcagcagttcttggtgttcctgccaaagctacaatcaaagaggcaaacagtgaatctttcgttgtgaagactcttgacaggaaaacactttgggaaatgcagacacctcagataatcaaacctgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="35283" stop="39570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35583" g_stop="35716" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35717" i_stop="35798" i_length="82">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35799" g_stop="35876" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="212" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35877" i_stop="36110" i_length="234">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36111" g_stop="36166" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="268" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36167" i_stop="36730" i_length="564">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36731" g_stop="36810" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="348" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36811" i_stop="36972" i_length="162">
            <donor d_prob="0.578" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36973" g_stop="37055" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="431" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37056" i_stop="37809" i_length="754">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37810" g_stop="37887" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="509" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37888" i_stop="38128" i_length="241">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38129" g_stop="38197" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="578" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38198" i_stop="39113" i_length="916">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39114" g_stop="39182" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="647" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="39183" i_stop="39253" i_length="71">
            <donor d_prob="0.767" d_score="1.00"/>
            <acceptor a_prob="0.016" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="39254" g_stop="39270" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="664" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E374674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35583" e_stop="35716"/>
          <exon e_start="35799" e_stop="35876"/>
          <exon e_start="36111" e_stop="36166"/>
          <exon e_start="36731" e_stop="36810"/>
          <exon e_start="36973" e_stop="37055"/>
          <exon e_start="37810" e_stop="37887"/>
          <exon e_start="38129" e_stop="38197"/>
          <exon e_start="39114" e_stop="39182"/>
          <exon e_start="39254" e_stop="39270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAGGTTATGTGTCATGTGATGTAAGATCTTCTATTTTTTCAGTGAAAAATTGAATCTTGAACATTGGCATTTTTTATATCGTCAGGAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGTGTAAGTTAAATATGAGTTTAAGAGGGAAATAACTTATTTTGTTGTTTCCTATTACTTGTAATTCTATTTTCATTGTTTGTATTGTTTGGTTCATCTAAAATTTGATGCAGAAGGTCTCTAAAAACTGTTCTGTTTTTCAATTCTTTGCATCTTTCATTCCCATATCTTCAATATCTACATTGTTAAAACTTTCTTCTGTCAGATGATGATGTTGTTATGTTTTGTTTGGAATAGGCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAGGTAAAAGTAATGGTCAACTTGATTCAATTATGACTAAACCTATCTAAAACAAATTTCCTAGTGCTAGACAGTAGACATAAGTTACATCTTGATACTTCTATAATTTATGCTGTGGCGAGAAATTGTTAAGTTTGCACGAATTCACCTTGGAAAATTGATGAATATATCGAAGAAGGGTTTAGCTAATAACGCCACGAAATTGGTAGTCATTAGCAGGACCTCTTTTCTTCGATTGAGTTGGTTTGATATTTGACATAATCTGTGTGAGACTGGTGCAAGTCAAGATGGGTAATCAGAAGAGAGATGGTCTACTGCAAGTCTTGAACACTGATGCTATTGAGTTCTGTCTATCAATTCTCAGAAAGTTTTCTGAACTGTTAGACGACCAAACCAAGGACCCCCATGTTTATTTTACACAAGTATTGGGCACCACAAAAACTAAATCCATTTAATGTAGAAATTTAACAGTTTTGGAACCACAGTTTGGAGAGAATCTTTTGTATCTACTCAACCAGTTCGATCACATATTTGACTTTGTGGTGACAATTTGTTGGATTGTTGCAGTTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAGGTATAGAGTTAAAATGTCTTATAGTGTGTGTGTGCAGCCAATAGAAAAATGTCCAAGAAAGCAATGAATGTGAACTTACCTTCCTTATTCTGATTGCAATATCTATAGGAATTTGTGCAAACACTAAGGTAATGATATAATAATTCTTCATTTATTTTTTAGATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAGGTACGTGCTGTATGCTAACTCAAATTGTATAGGTATCTCACTTCCAATTTTCAAAAAACAAAGTTGGTTATGTTCGAGAACTTAATTTTTCTATAATTTACCAAGAGCCTTTTTTCAGCCTTCATTCTCCAGAATATGTAGTTAGCCAAATATTCAGTCCTATCATGATTGGTTATACTTAGTAGATCACTGGGCTGATGTTCAGTAAACTTGGGTTCTGTTGCTGATTTCATACAGTATACTTCATGTAGGAAAAGTTATTAACTAGTTATCTAGTTGTTCCTGCTTCATTTGGTTCGTCTAAGGTGCTAAAACTGTTAGGCTCTTATGTGATCAGTCCTCGCTGCTCAGTTTTTGTCCTTAAGATTCTTTTATCTCTTTTCTTATCCAAATAAGAGTGATAAGTTGATCTCATTCCAAATGCTATTGAAATGTTTGACTTTTTAGGGAGAACAACAAGTGGCTAAAAGCTTAAACTCAAGAGTTACCTTTTGCATTGCATTTCATCTTTCTTTGGTGATTTGGATGTTAACATGTGATCTTGAGTTATTATTGTTCATTTAATTTCTGGTCAAATGTCTTGCATTCACTCCATAGTTAAAGATGAACTTGTGAAATATCTTCATCTTATTTGGTTCCACATATTGTTCAGATTTGTGTCGTTATTATGTTATGCAGTAAGACAATGTTATGGCCATGGTATTTCTCAGTAGTGATTGTGGTTTTTAGAAAGTGTTGATGCTTTGCATGCCAGGAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAGGTTTGATCATTGCATAATCTCCTCCTCCTCCTTTAGTCTCTTGGCTTTGGCAAGAGATTTCTGGTATTGTGGGAAGTACTCCTGCCGAATATAACATGAATTCTGGAGATATCCATCTTCTTTATCTTTAATTCTGCATCACATTATATGCAGATCGTTGACATTTTATAAAGGTCATATGTATGTTTAAGATTCTGAAGGACAAATCTTCCTTTACTTTTTCCAAGAATCTTCTCTGCAGGTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAGGTAGCTCTTAATTATTGCTAGTATCTGATTTGTAATAAAATATGAAGCTTCAGGTGGCTGACCATCTCCCATGAGAGAATGAAATGGTAGCAAATTGAAGCATGTTCTGAGTTTTATGTAGCCTTTTTGTAAGTAGATATTCAAGCTTATAGTTTCCTGTTAGAGACATCAACTTATATTTCTAAAGCAACTCCCGTACAAGGAAGGACAATGTACTATGAGACTTGCTCTTTTTGCTATCTTGGCAGGCTAATTGCTCTAGGCTTTTACTGTGGAACTATTAGGATGTCGTGTAACCTATGTTCTATTTCATCTATATCGATATTGCATAATCTCCTAAACATGTTTCAGGTGCTTCTAAGTTGTAGCATGGTACTATTAAGTCTCAATTTTGGTCAATAGATTTTCACTTTTATTATTTACTAGTATGCATTATCCTATTATCACCAAATGGTTATATCTGTTTGATATTTGTTTAATAAGAAGTATTTTTAGGCTGTCCTACAGTTGCTGTCTAGTATTATTTCTCCTTTAATTTCTCTTGTTGACAGAAATTAACGTTGGCATTATAGTTCTATTAAACATTTGGAGGGAGATAAAATGCATACTTATTCAGTTATATAATATGAAAAGTAAGACCACATTTTATAATACCCTGCAGGACCTTCATTATCCGTGCTTTAAATATGATGGCCAGATAAAATTAAGGCATTTGCTAGGAAATTTAAATATAGCCCTCTATCTCTCACCTCCCCTATTTGACCTGACTGGCATGAATGTAAAACTGTTGACAGGAATGTTAATAAAGCCTCTATTTAAGTGCATTGGCATCGCACAGAAGGTCTCCCTCCTTATATTATATCACTTTTACTTGGTTCTGATTGGTCTATTAATTTTCATGTCAATTCTGGTGCAGGCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAGGTAGTAAGCCTTTCTCTTTTAGAATTTTTTCTGCAGTTGCAGAGACCGTTAAACAATTTTGTCTGGCACAGATAATCAAACCTGAGTT</genome_strand>
        <mrna_strand>ATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAG..................................................................................GAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGT..........................................................................................................................................................................................................................................GCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAG..................................................................................................................................................................ATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAG.................................................................................................................................................................................................................................................GTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAG.......................................................................ATAATCAAACCTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205599" ref_strand="+" ref_description="SGN-E205599 [cLEC-21-B9]">
      <seq>atgtattgccttctatctcacttttccccacctactttgtaaagaatccttgcagaagaacctacagtcatgctgacccaagaaggggtcttttcaagatttcttgttcttccacctcagaaaatcttaacaaggagtcagatgtagtggtggtggaggagaaaagtgtttctgtgattcttcttgctggaggaaaggggaaaagaatgggtgcaagcatgccaaagcagtatcttccacttctaggccagccaattgcattgtacagtttctacactttctccaagatgcctcaggtgaaggaaattattgttgtatgtgatccttcttatcaagacatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="35283" stop="37107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35583" g_stop="35716" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35717" i_stop="35798" i_length="82">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35799" g_stop="35876" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="212" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35877" i_stop="36110" i_length="234">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36111" g_stop="36166" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="268" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36167" i_stop="36730" i_length="564">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36731" g_stop="36807" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="345" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E205599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35583" e_stop="35716"/>
          <exon e_start="35799" e_stop="35876"/>
          <exon e_start="36111" e_stop="36166"/>
          <exon e_start="36731" e_stop="36807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAGGTTATGTGTCATGTGATGTAAGATCTTCTATTTTTTCAGTGAAAAATTGAATCTTGAACATTGGCATTTTTTATATCGTCAGGAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGTGTAAGTTAAATATGAGTTTAAGAGGGAAATAACTTATTTTGTTGTTTCCTATTACTTGTAATTCTATTTTCATTGTTTGTATTGTTTGGTTCATCTAAAATTTGATGCAGAAGGTCTCTAAAAACTGTTCTGTTTTTCAATTCTTTGCATCTTTCATTCCCATATCTTCAATATCTACATTGTTAAAACTTTCTTCTGTCAGATGATGATGTTGTTATGTTTTGTTTGGAATAGGCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAGGTAAAAGTAATGGTCAACTTGATTCAATTATGACTAAACCTATCTAAAACAAATTTCCTAGTGCTAGACAGTAGACATAAGTTACATCTTGATACTTCTATAATTTATGCTGTGGCGAGAAATTGTTAAGTTTGCACGAATTCACCTTGGAAAATTGATGAATATATCGAAGAAGGGTTTAGCTAATAACGCCACGAAATTGGTAGTCATTAGCAGGACCTCTTTTCTTCGATTGAGTTGGTTTGATATTTGACATAATCTGTGTGAGACTGGTGCAAGTCAAGATGGGTAATCAGAAGAGAGATGGTCTACTGCAAGTCTTGAACACTGATGCTATTGAGTTCTGTCTATCAATTCTCAGAAAGTTTTCTGAACTGTTAGACGACCAAACCAAGGACCCCCATGTTTATTTTACACAAGTATTGGGCACCACAAAAACTAAATCCATTTAATGTAGAAATTTAACAGTTTTGGAACCACAGTTTGGAGAGAATCTTTTGTATCTACTCAACCAGTTCGATCACATATTTGACTTTGTGGTGACAATTTGTTGGATTGTTGCAGTTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTG</genome_strand>
        <mrna_strand>ATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAG..................................................................................GAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGT..........................................................................................................................................................................................................................................GCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204921" ref_strand="+" ref_description="SGN-E204921 [cLEC-14-P24]">
      <seq>atgtattgccttctatctcacttttccccacctactttgtaaagaatccttgcagaagaacctacagtcatgctgacccaagaaggggtcttttcaagatttcttgttctttcacctcagaaaatcttaacaaggagtcaaatgtagtggtggtggaggagaaaagtgtttctgtgattcttcttgctggaggaaaggggaaaagaatgggtgcaagcatgccaaagcagtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="35283" stop="36432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35583" g_stop="35716" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35717" i_stop="35798" i_length="82">
            <donor d_prob="0.822" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35799" g_stop="35876" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="212" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35877" i_stop="36110" i_length="234">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36111" g_stop="36132" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="234" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E204921" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35583" e_stop="35716"/>
          <exon e_start="35799" e_stop="35876"/>
          <exon e_start="36111" e_stop="36132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAGGTTATGTGTCATGTGATGTAAGATCTTCTATTTTTTCAGTGAAAAATTGAATCTTGAACATTGGCATTTTTTATATCGTCAGGAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGTGTAAGTTAAATATGAGTTTAAGAGGGAAATAACTTATTTTGTTGTTTCCTATTACTTGTAATTCTATTTTCATTGTTTGTATTGTTTGGTTCATCTAAAATTTGATGCAGAAGGTCTCTAAAAACTGTTCTGTTTTTCAATTCTTTGCATCTTTCATTCCCATATCTTCAATATCTACATTGTTAAAACTTTCTTCTGTCAGATGATGATGTTGTTATGTTTTGTTTGGAATAGGCAAGCATGCCAAAGCAGTATC</genome_strand>
        <mrna_strand>ATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTTCACCTCAGAAAATCTTAACAAG..................................................................................GAGTCAAATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGT..........................................................................................................................................................................................................................................GCAAGCATGCCAAAGCAGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283358" ref_strand="+" ref_description="SGN-E283358 [cLER-12-K15]">
      <seq>tctatctcacttttccccacctactttgtaaagaatccttgcagaagaacctacagtcatgctgacccaagaaggggtcttttcaagatttcttgttcttccacctcagaaaatcttaacaaggagtcagatgtagtggtggtggaggagaaaagtgtttctgtgattcttcttgctggaggaaaggggaaaagaatgggtgcaagcatgccaaagcagtatcttccacttctaggccagccaattgcattgtacagtttctacactttctccaagatgcctcaggtgaaggaaattattgttgtatgtgatccttcttatcaagacatttttgaagatgccaaagagtatatccaagtcgacttaaaatttgcattgcctgggaaggaaagacaagattctgtatacagcggacttcaggaagttgattcaaactccaaactcgcatgcatccatgactctgcaagacctcttgtacaaattgaagatgtagaaaaagtccctgaagatggttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="35294" stop="38189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35594" g_stop="35716" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35717" i_stop="35798" i_length="82">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35799" g_stop="35876" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="201" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35877" i_stop="36110" i_length="234">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36111" g_stop="36166" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="257" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36167" i_stop="36730" i_length="564">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36731" g_stop="36810" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="337" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36811" i_stop="36972" i_length="162">
            <donor d_prob="0.578" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36973" g_stop="37055" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="420" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37056" i_stop="37809" i_length="754">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37810" g_stop="37887" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="498" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37888" i_stop="38128" i_length="241">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38129" g_stop="38147" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="517" r_length="19" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E283358" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35594" e_stop="35716"/>
          <exon e_start="35799" e_stop="35876"/>
          <exon e_start="36111" e_stop="36166"/>
          <exon e_start="36731" e_stop="36810"/>
          <exon e_start="36973" e_stop="37055"/>
          <exon e_start="37810" e_stop="37887"/>
          <exon e_start="38129" e_stop="38147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAGGTTATGTGTCATGTGATGTAAGATCTTCTATTTTTTCAGTGAAAAATTGAATCTTGAACATTGGCATTTTTTATATCGTCAGGAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGTGTAAGTTAAATATGAGTTTAAGAGGGAAATAACTTATTTTGTTGTTTCCTATTACTTGTAATTCTATTTTCATTGTTTGTATTGTTTGGTTCATCTAAAATTTGATGCAGAAGGTCTCTAAAAACTGTTCTGTTTTTCAATTCTTTGCATCTTTCATTCCCATATCTTCAATATCTACATTGTTAAAACTTTCTTCTGTCAGATGATGATGTTGTTATGTTTTGTTTGGAATAGGCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAGGTAAAAGTAATGGTCAACTTGATTCAATTATGACTAAACCTATCTAAAACAAATTTCCTAGTGCTAGACAGTAGACATAAGTTACATCTTGATACTTCTATAATTTATGCTGTGGCGAGAAATTGTTAAGTTTGCACGAATTCACCTTGGAAAATTGATGAATATATCGAAGAAGGGTTTAGCTAATAACGCCACGAAATTGGTAGTCATTAGCAGGACCTCTTTTCTTCGATTGAGTTGGTTTGATATTTGACATAATCTGTGTGAGACTGGTGCAAGTCAAGATGGGTAATCAGAAGAGAGATGGTCTACTGCAAGTCTTGAACACTGATGCTATTGAGTTCTGTCTATCAATTCTCAGAAAGTTTTCTGAACTGTTAGACGACCAAACCAAGGACCCCCATGTTTATTTTACACAAGTATTGGGCACCACAAAAACTAAATCCATTTAATGTAGAAATTTAACAGTTTTGGAACCACAGTTTGGAGAGAATCTTTTGTATCTACTCAACCAGTTCGATCACATATTTGACTTTGTGGTGACAATTTGTTGGATTGTTGCAGTTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAGGTATAGAGTTAAAATGTCTTATAGTGTGTGTGTGCAGCCAATAGAAAAATGTCCAAGAAAGCAATGAATGTGAACTTACCTTCCTTATTCTGATTGCAATATCTATAGGAATTTGTGCAAACACTAAGGTAATGATATAATAATTCTTCATTTATTTTTTAGATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAGGTACGTGCTGTATGCTAACTCAAATTGTATAGGTATCTCACTTCCAATTTTCAAAAAACAAAGTTGGTTATGTTCGAGAACTTAATTTTTCTATAATTTACCAAGAGCCTTTTTTCAGCCTTCATTCTCCAGAATATGTAGTTAGCCAAATATTCAGTCCTATCATGATTGGTTATACTTAGTAGATCACTGGGCTGATGTTCAGTAAACTTGGGTTCTGTTGCTGATTTCATACAGTATACTTCATGTAGGAAAAGTTATTAACTAGTTATCTAGTTGTTCCTGCTTCATTTGGTTCGTCTAAGGTGCTAAAACTGTTAGGCTCTTATGTGATCAGTCCTCGCTGCTCAGTTTTTGTCCTTAAGATTCTTTTATCTCTTTTCTTATCCAAATAAGAGTGATAAGTTGATCTCATTCCAAATGCTATTGAAATGTTTGACTTTTTAGGGAGAACAACAAGTGGCTAAAAGCTTAAACTCAAGAGTTACCTTTTGCATTGCATTTCATCTTTCTTTGGTGATTTGGATGTTAACATGTGATCTTGAGTTATTATTGTTCATTTAATTTCTGGTCAAATGTCTTGCATTCACTCCATAGTTAAAGATGAACTTGTGAAATATCTTCATCTTATTTGGTTCCACATATTGTTCAGATTTGTGTCGTTATTATGTTATGCAGTAAGACAATGTTATGGCCATGGTATTTCTCAGTAGTGATTGTGGTTTTTAGAAAGTGTTGATGCTTTGCATGCCAGGAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAGGTTTGATCATTGCATAATCTCCTCCTCCTCCTTTAGTCTCTTGGCTTTGGCAAGAGATTTCTGGTATTGTGGGAAGTACTCCTGCCGAATATAACATGAATTCTGGAGATATCCATCTTCTTTATCTTTAATTCTGCATCACATTATATGCAGATCGTTGACATTTTATAAAGGTCATATGTATGTTTAAGATTCTGAAGGACAAATCTTCCTTTACTTTTTCCAAGAATCTTCTCTGCAGGTCCTGAAGGATGGTTGGC</genome_strand>
        <mrna_strand>TCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAG..................................................................................GAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGT..........................................................................................................................................................................................................................................GCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAG..................................................................................................................................................................ATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAA.................................................................................................................................................................................................................................................GTCCCTGAAGATGGTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622601" ref_strand="+" ref_description="SGN-E622601 [72970]">
      <seq>cttgctggaggaaaggggaaaagaatgggcgcaagcatgccaaagcagtatcttccacttctaggccagccaattgcattgtacagtttctacactttctccaagatgcctcaggtgaaggaaatcattgttgtatgtgatccttcttatcaagacatttttgaagatgccaaagagtatatccaagtcgacttaaaatttgcattgcctgggaaggaaagacaagattctgtatacagcggacttcaggaagttgattcaaacgccaaacttgcatgcatccatgactctgcaagacctcttgtacaaactgaagatgtagaaaaggtcctgaaggatggttggctggttggagcagcagttcttggcgttcctgccaaagccacaatcaaagaggcaaacagtgaatctttcgttgtgaaaactcttgacaggaaaacactttgggaaatgcagacacctcagataatcaagcctgagttgcttaagaagggtttcgagcttgtcaacagggaaggacttgaagtaacagatgatgtatcaatagtggagcaccttaaacatccagtatatattactgaaggctcttacactaacataaaggttacaacacccgatgatttgcttcttgcagaaagaatattgaaccattgaagaatcttagggttttcaattttcttaggcttatatttccctggaacttttgtattttgaataggtgaagttatcttccacagagttctcagaacaattttgagtcttgtaaacttttggcaaaaggaaagttacattctttcaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="35547" stop="40871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35847" g_stop="35876" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35877" i_stop="36110" i_length="234">
            <donor d_prob="0.892" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36111" g_stop="36166" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="86" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36167" i_stop="36730" i_length="564">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36731" g_stop="36810" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="166" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36811" i_stop="36972" i_length="162">
            <donor d_prob="0.578" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36973" g_stop="37055" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="249" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37056" i_stop="37809" i_length="754">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37810" g_stop="37887" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="327" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37888" i_stop="38128" i_length="241">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38129" g_stop="38197" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="396" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38198" i_stop="39113" i_length="916">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39114" g_stop="39182" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="465" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39183" i_stop="39253" i_length="71">
            <donor d_prob="0.767" d_score="0.98"/>
            <acceptor a_prob="0.016" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39254" g_stop="39300" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="512" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="39301" i_stop="40155" i_length="855">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="40156" g_stop="40246" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="603" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="40247" i_stop="40355" i_length="109">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="40356" g_stop="40571" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="802" r_length="199" r_score="0.801"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E622601" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35847" e_stop="35876"/>
          <exon e_start="36111" e_stop="36166"/>
          <exon e_start="36731" e_stop="36810"/>
          <exon e_start="36973" e_stop="37055"/>
          <exon e_start="37810" e_stop="37887"/>
          <exon e_start="38129" e_stop="38197"/>
          <exon e_start="39114" e_stop="39182"/>
          <exon e_start="39254" e_stop="39300"/>
          <exon e_start="40156" e_stop="40246"/>
          <exon e_start="40356" e_stop="40571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGGAGGAAAGGGGAAAAGAATGGGTGTAAGTTAAATATGAGTTTAAGAGGGAAATAACTTATTTTGTTGTTTCCTATTACTTGTAATTCTATTTTCATTGTTTGTATTGTTTGGTTCATCTAAAATTTGATGCAGAAGGTCTCTAAAAACTGTTCTGTTTTTCAATTCTTTGCATCTTTCATTCCCATATCTTCAATATCTACATTGTTAAAACTTTCTTCTGTCAGATGATGATGTTGTTATGTTTTGTTTGGAATAGGCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAGGTAAAAGTAATGGTCAACTTGATTCAATTATGACTAAACCTATCTAAAACAAATTTCCTAGTGCTAGACAGTAGACATAAGTTACATCTTGATACTTCTATAATTTATGCTGTGGCGAGAAATTGTTAAGTTTGCACGAATTCACCTTGGAAAATTGATGAATATATCGAAGAAGGGTTTAGCTAATAACGCCACGAAATTGGTAGTCATTAGCAGGACCTCTTTTCTTCGATTGAGTTGGTTTGATATTTGACATAATCTGTGTGAGACTGGTGCAAGTCAAGATGGGTAATCAGAAGAGAGATGGTCTACTGCAAGTCTTGAACACTGATGCTATTGAGTTCTGTCTATCAATTCTCAGAAAGTTTTCTGAACTGTTAGACGACCAAACCAAGGACCCCCATGTTTATTTTACACAAGTATTGGGCACCACAAAAACTAAATCCATTTAATGTAGAAATTTAACAGTTTTGGAACCACAGTTTGGAGAGAATCTTTTGTATCTACTCAACCAGTTCGATCACATATTTGACTTTGTGGTGACAATTTGTTGGATTGTTGCAGTTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAGGTATAGAGTTAAAATGTCTTATAGTGTGTGTGTGCAGCCAATAGAAAAATGTCCAAGAAAGCAATGAATGTGAACTTACCTTCCTTATTCTGATTGCAATATCTATAGGAATTTGTGCAAACACTAAGGTAATGATATAATAATTCTTCATTTATTTTTTAGATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAGGTACGTGCTGTATGCTAACTCAAATTGTATAGGTATCTCACTTCCAATTTTCAAAAAACAAAGTTGGTTATGTTCGAGAACTTAATTTTTCTATAATTTACCAAGAGCCTTTTTTCAGCCTTCATTCTCCAGAATATGTAGTTAGCCAAATATTCAGTCCTATCATGATTGGTTATACTTAGTAGATCACTGGGCTGATGTTCAGTAAACTTGGGTTCTGTTGCTGATTTCATACAGTATACTTCATGTAGGAAAAGTTATTAACTAGTTATCTAGTTGTTCCTGCTTCATTTGGTTCGTCTAAGGTGCTAAAACTGTTAGGCTCTTATGTGATCAGTCCTCGCTGCTCAGTTTTTGTCCTTAAGATTCTTTTATCTCTTTTCTTATCCAAATAAGAGTGATAAGTTGATCTCATTCCAAATGCTATTGAAATGTTTGACTTTTTAGGGAGAACAACAAGTGGCTAAAAGCTTAAACTCAAGAGTTACCTTTTGCATTGCATTTCATCTTTCTTTGGTGATTTGGATGTTAACATGTGATCTTGAGTTATTATTGTTCATTTAATTTCTGGTCAAATGTCTTGCATTCACTCCATAGTTAAAGATGAACTTGTGAAATATCTTCATCTTATTTGGTTCCACATATTGTTCAGATTTGTGTCGTTATTATGTTATGCAGTAAGACAATGTTATGGCCATGGTATTTCTCAGTAGTGATTGTGGTTTTTAGAAAGTGTTGATGCTTTGCATGCCAGGAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAGGTTTGATCATTGCATAATCTCCTCCTCCTCCTTTAGTCTCTTGGCTTTGGCAAGAGATTTCTGGTATTGTGGGAAGTACTCCTGCCGAATATAACATGAATTCTGGAGATATCCATCTTCTTTATCTTTAATTCTGCATCACATTATATGCAGATCGTTGACATTTTATAAAGGTCATATGTATGTTTAAGATTCTGAAGGACAAATCTTCCTTTACTTTTTCCAAGAATCTTCTCTGCAGGTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAGGTAGCTCTTAATTATTGCTAGTATCTGATTTGTAATAAAATATGAAGCTTCAGGTGGCTGACCATCTCCCATGAGAGAATGAAATGGTAGCAAATTGAAGCATGTTCTGAGTTTTATGTAGCCTTTTTGTAAGTAGATATTCAAGCTTATAGTTTCCTGTTAGAGACATCAACTTATATTTCTAAAGCAACTCCCGTACAAGGAAGGACAATGTACTATGAGACTTGCTCTTTTTGCTATCTTGGCAGGCTAATTGCTCTAGGCTTTTACTGTGGAACTATTAGGATGTCGTGTAACCTATGTTCTATTTCATCTATATCGATATTGCATAATCTCCTAAACATGTTTCAGGTGCTTCTAAGTTGTAGCATGGTACTATTAAGTCTCAATTTTGGTCAATAGATTTTCACTTTTATTATTTACTAGTATGCATTATCCTATTATCACCAAATGGTTATATCTGTTTGATATTTGTTTAATAAGAAGTATTTTTAGGCTGTCCTACAGTTGCTGTCTAGTATTATTTCTCCTTTAATTTCTCTTGTTGACAGAAATTAACGTTGGCATTATAGTTCTATTAAACATTTGGAGGGAGATAAAATGCATACTTATTCAGTTATATAATATGAAAAGTAAGACCACATTTTATAATACCCTGCAGGACCTTCATTATCCGTGCTTTAAATATGATGGCCAGATAAAATTAAGGCATTTGCTAGGAAATTTAAATATAGCCCTCTATCTCTCACCTCCCCTATTTGACCTGACTGGCATGAATGTAAAACTGTTGACAGGAATGTTAATAAAGCCTCTATTTAAGTGCATTGGCATCGCACAGAAGGTCTCCCTCCTTATATTATATCACTTTTACTTGGTTCTGATTGGTCTATTAATTTTCATGTCAATTCTGGTGCAGGCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAGGTAGTAAGCCTTTCTCTTTTAGAATTTTTTCTGCAGTTGCAGAGACCGTTAAACAATTTTGTCTGGCACAGATAATCAAACCTGAGTTGCTTAAGAAGGGTTTCGAGCTTGTCAACAGGTAGTCCTATATTCACGTCTCTAACAAATTTTGACTTTCAATATTCAATAAGCTTGTGCTTCTTTATTAGAGTTTCAATGTCTAGTATGTTGTCCAATAATTTTATCATGATTATGCATAGAACATAAGTTTTATTGTTGAGAAGTTTGAGAATGACAGGCAGTTTGAAGCATGTCATTTAAGTTAGTCGGCATGATATTTCAACTTTCTTTTCTAGGTTAGAGATGATAAGCCTGGGCCAAGTGGGGTTAGAAACAAATTAGTTCTCAAGACTTGTACATCTTTATTAGGGCCTTTGATACTGTTACTTGATTGAAGATAGTGCTACATTTTCTTTTTCTTTTTCTGGCAAGGACACCACAGTTATTTAAAGAGCAAAATTGTTCTACATTTTTATATTAGAGACACCTTTTTAATTTGGATAATATATGGATACTTCCCCCATCACCCGCCAGTTAAGTTTGTTGCACTTATCTCTGGACCTTTCAAAATACACCCATAACCTCCTCAACTATGATGGACCAAAGTTCATTGTTGGTTTTCGCTCGAGTAACTAGTAGGTCTCTCACCTAGCATGAGGGTAAGACTGGTTCTAGGTCACGTTCCTTTCAAAAACACCAAACTCTAGACCAAAATAAACTTAATGAATTGAGAATATAACGAAGTCCAAGAGAAAGTAAAGGATCAGGCAACTTGAAAAGAAAAGAAAAAGTGTCAGCACATCCATCTGCCACTCTTTATCTCCATTAAATGGAAGAAAGATGAATTAATGGGGCAAACTGAAAAGGAAAAAGAAAAACGGAGGATATAAACAAATATTACCCTGCTTATTTTGTGTTTCATGTGGTCTTTTAGGGAAGGACTTGAAGTAACAGATGATGTATCAATAGTGGAGCACCTTAAACATCCAGTATATATTACTGAAGGCTCTTACACTAACATAAAGGTAGCCAACTAAACATATCGTCTTTTTGGCTCATAGTAGTATCCTCTCTACTGCACTTTGAGCTGCTTATGGATGCGTCAATATATTCAAATGTTGTTATGATATGCAGGTTACAACGCCTGATGATTTGCTTCTTGCAGAAAGAATATTGAA-TATTGAAGAATCTTAGGGTTTTCAATTTTCTTAGGCTTTTTTTTTGTTCAAACATTATAATTCCCTGGAA-ATTTGTATTCTGAATAGGTGAAGTTAACCTTCCACAAGAGTTCCTCAGAA-AA--TTGAGTCTTGTAAACTTATTGGCAAAA-GAAAGCAACATTCTTTTCAAGGT</genome_strand>
        <mrna_strand>CTTGCTGGAGGAAAGGGGAAAAGAATGGGC..........................................................................................................................................................................................................................................GCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATCATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAG..................................................................................................................................................................ATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGATTCAAACGCCAAACTTGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAACTGAAGATGTAGAAAAG.................................................................................................................................................................................................................................................GTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGCGTTCCTGCCAAAGCCACAATCAAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACAGTGAATCTTTCGTTGTGAAAACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAG.......................................................................ATAATCAAGCCTGAGTTGCTTAAGAAGGGTTTCGAGCTTGTCAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGACTTGAAGTAACAGATGATGTATCAATAGTGGAGCACCTTAAACATCCAGTATATATTACTGAAGGCTCTTACACTAACATAAAG.............................................................................................................GTTACAACACCCGATGATTTGCTTCTTGCAGAAAGAATATTGAACCATTGAAGAATCTTAGGGTTTTCAATTTTCTTAGGC----------TT-----A-TAT--TTCCCTGGAACTTTTGTATTTTGAATAGGTGAAGTT-ATCTTCCAC-AGAGTT-CTCAGAACAATTTTGAGTCTTGTAAACTT-TTGGCAAAAGGAAAGTTACATTC-TTTCAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E695255" ref_strand="+" ref_description="SGN-E695255 [LH_Ea06A21](-)">
      <seq>aggccagccaattgcattgtacagtttatacactttctccaagatgcctcaggtgaaggaaattattgttgtatgtgatccttcttatcaagacatttttgaagatgccaaagagtatatccaagtcgacttaaaatttgcattgcctgggaaggaaagacaagattttgtatacagcggacttcaggaagttgattcaaactccaaactcgcatgcatccatgattgtgcaagacctcttgttcaaattgaagatgtagaaaaggtcctgaaggatggttggttggttggagcaccagttcttggcgttcctgccaaaggtacaatcaaagaggcaaacagtgaatctttcgttgtgaagactcttgacaggaaaacactttgggaaatgcagccccctcagataatcaagcctgagttgcttaagaagggtttcgagcttgtcaacagggaaggacttgaagtaacagatgatgtatcaatagtggagcaccttaaacatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="35843" stop="40509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36143" g_stop="36166" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36167" i_stop="36730" i_length="564">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36731" g_stop="36810" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="104" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36811" i_stop="36972" i_length="162">
            <donor d_prob="0.578" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36973" g_stop="37055" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="187" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37056" i_stop="37809" i_length="754">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37810" g_stop="37887" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="265" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37888" i_stop="38128" i_length="241">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.948" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38129" g_stop="38197" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="334" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38198" i_stop="39113" i_length="916">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39114" g_stop="39182" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="403" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39183" i_stop="39253" i_length="71">
            <donor d_prob="0.767" d_score="0.96"/>
            <acceptor a_prob="0.016" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39254" g_stop="39300" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="450" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39301" i_stop="40155" i_length="855">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40156" g_stop="40209" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="504" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E695255" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36143" e_stop="36166"/>
          <exon e_start="36731" e_stop="36810"/>
          <exon e_start="36973" e_stop="37055"/>
          <exon e_start="37810" e_stop="37887"/>
          <exon e_start="38129" e_stop="38197"/>
          <exon e_start="39114" e_stop="39182"/>
          <exon e_start="39254" e_stop="39300"/>
          <exon e_start="40156" e_stop="40209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCAGCCAATTGCATTGTACAGGTAAAAGTAATGGTCAACTTGATTCAATTATGACTAAACCTATCTAAAACAAATTTCCTAGTGCTAGACAGTAGACATAAGTTACATCTTGATACTTCTATAATTTATGCTGTGGCGAGAAATTGTTAAGTTTGCACGAATTCACCTTGGAAAATTGATGAATATATCGAAGAAGGGTTTAGCTAATAACGCCACGAAATTGGTAGTCATTAGCAGGACCTCTTTTCTTCGATTGAGTTGGTTTGATATTTGACATAATCTGTGTGAGACTGGTGCAAGTCAAGATGGGTAATCAGAAGAGAGATGGTCTACTGCAAGTCTTGAACACTGATGCTATTGAGTTCTGTCTATCAATTCTCAGAAAGTTTTCTGAACTGTTAGACGACCAAACCAAGGACCCCCATGTTTATTTTACACAAGTATTGGGCACCACAAAAACTAAATCCATTTAATGTAGAAATTTAACAGTTTTGGAACCACAGTTTGGAGAGAATCTTTTGTATCTACTCAACCAGTTCGATCACATATTTGACTTTGTGGTGACAATTTGTTGGATTGTTGCAGTTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAGGTATAGAGTTAAAATGTCTTATAGTGTGTGTGTGCAGCCAATAGAAAAATGTCCAAGAAAGCAATGAATGTGAACTTACCTTCCTTATTCTGATTGCAATATCTATAGGAATTTGTGCAAACACTAAGGTAATGATATAATAATTCTTCATTTATTTTTTAGATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAGGTACGTGCTGTATGCTAACTCAAATTGTATAGGTATCTCACTTCCAATTTTCAAAAAACAAAGTTGGTTATGTTCGAGAACTTAATTTTTCTATAATTTACCAAGAGCCTTTTTTCAGCCTTCATTCTCCAGAATATGTAGTTAGCCAAATATTCAGTCCTATCATGATTGGTTATACTTAGTAGATCACTGGGCTGATGTTCAGTAAACTTGGGTTCTGTTGCTGATTTCATACAGTATACTTCATGTAGGAAAAGTTATTAACTAGTTATCTAGTTGTTCCTGCTTCATTTGGTTCGTCTAAGGTGCTAAAACTGTTAGGCTCTTATGTGATCAGTCCTCGCTGCTCAGTTTTTGTCCTTAAGATTCTTTTATCTCTTTTCTTATCCAAATAAGAGTGATAAGTTGATCTCATTCCAAATGCTATTGAAATGTTTGACTTTTTAGGGAGAACAACAAGTGGCTAAAAGCTTAAACTCAAGAGTTACCTTTTGCATTGCATTTCATCTTTCTTTGGTGATTTGGATGTTAACATGTGATCTTGAGTTATTATTGTTCATTTAATTTCTGGTCAAATGTCTTGCATTCACTCCATAGTTAAAGATGAACTTGTGAAATATCTTCATCTTATTTGGTTCCACATATTGTTCAGATTTGTGTCGTTATTATGTTATGCAGTAAGACAATGTTATGGCCATGGTATTTCTCAGTAGTGATTGTGGTTTTTAGAAAGTGTTGATGCTTTGCATGCCAGGAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAGGTTTGATCATTGCATAATCTCCTCCTCCTCCTTTAGTCTCTTGGCTTTGGCAAGAGATTTCTGGTATTGTGGGAAGTACTCCTGCCGAATATAACATGAATTCTGGAGATATCCATCTTCTTTATCTTTAATTCTGCATCACATTATATGCAGATCGTTGACATTTTATAAAGGTCATATGTATGTTTAAGATTCTGAAGGACAAATCTTCCTTTACTTTTTCCAAGAATCTTCTCTGCAGGTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAGGTAGCTCTTAATTATTGCTAGTATCTGATTTGTAATAAAATATGAAGCTTCAGGTGGCTGACCATCTCCCATGAGAGAATGAAATGGTAGCAAATTGAAGCATGTTCTGAGTTTTATGTAGCCTTTTTGTAAGTAGATATTCAAGCTTATAGTTTCCTGTTAGAGACATCAACTTATATTTCTAAAGCAACTCCCGTACAAGGAAGGACAATGTACTATGAGACTTGCTCTTTTTGCTATCTTGGCAGGCTAATTGCTCTAGGCTTTTACTGTGGAACTATTAGGATGTCGTGTAACCTATGTTCTATTTCATCTATATCGATATTGCATAATCTCCTAAACATGTTTCAGGTGCTTCTAAGTTGTAGCATGGTACTATTAAGTCTCAATTTTGGTCAATAGATTTTCACTTTTATTATTTACTAGTATGCATTATCCTATTATCACCAAATGGTTATATCTGTTTGATATTTGTTTAATAAGAAGTATTTTTAGGCTGTCCTACAGTTGCTGTCTAGTATTATTTCTCCTTTAATTTCTCTTGTTGACAGAAATTAACGTTGGCATTATAGTTCTATTAAACATTTGGAGGGAGATAAAATGCATACTTATTCAGTTATATAATATGAAAAGTAAGACCACATTTTATAATACCCTGCAGGACCTTCATTATCCGTGCTTTAAATATGATGGCCAGATAAAATTAAGGCATTTGCTAGGAAATTTAAATATAGCCCTCTATCTCTCACCTCCCCTATTTGACCTGACTGGCATGAATGTAAAACTGTTGACAGGAATGTTAATAAAGCCTCTATTTAAGTGCATTGGCATCGCACAGAAGGTCTCCCTCCTTATATTATATCACTTTTACTTGGTTCTGATTGGTCTATTAATTTTCATGTCAATTCTGGTGCAGGCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAGGTAGTAAGCCTTTCTCTTTTAGAATTTTTTCTGCAGTTGCAGAGACCGTTAAACAATTTTGTCTGGCACAGATAATCAAACCTGAGTTGCTTAAGAAGGGTTTCGAGCTTGTCAACAGGTAGTCCTATATTCACGTCTCTAACAAATTTTGACTTTCAATATTCAATAAGCTTGTGCTTCTTTATTAGAGTTTCAATGTCTAGTATGTTGTCCAATAATTTTATCATGATTATGCATAGAACATAAGTTTTATTGTTGAGAAGTTTGAGAATGACAGGCAGTTTGAAGCATGTCATTTAAGTTAGTCGGCATGATATTTCAACTTTCTTTTCTAGGTTAGAGATGATAAGCCTGGGCCAAGTGGGGTTAGAAACAAATTAGTTCTCAAGACTTGTACATCTTTATTAGGGCCTTTGATACTGTTACTTGATTGAAGATAGTGCTACATTTTCTTTTTCTTTTTCTGGCAAGGACACCACAGTTATTTAAAGAGCAAAATTGTTCTACATTTTTATATTAGAGACACCTTTTTAATTTGGATAATATATGGATACTTCCCCCATCACCCGCCAGTTAAGTTTGTTGCACTTATCTCTGGACCTTTCAAAATACACCCATAACCTCCTCAACTATGATGGACCAAAGTTCATTGTTGGTTTTCGCTCGAGTAACTAGTAGGTCTCTCACCTAGCATGAGGGTAAGACTGGTTCTAGGTCACGTTCCTTTCAAAAACACCAAACTCTAGACCAAAATAAACTTAATGAATTGAGAATATAACGAAGTCCAAGAGAAAGTAAAGGATCAGGCAACTTGAAAAGAAAAGAAAAAGTGTCAGCACATCCATCTGCCACTCTTTATCTCCATTAAATGGAAGAAAGATGAATTAATGGGGCAAACTGAAAAGGAAAAAGAAAAACGGAGGATATAAACAAATATTACCCTGCTTATTTTGTGTTTCATGTGGTCTTTTAGGGAAGGACTTGAAGTAACAGATGATGTATCAATAGTGGAGCACCTTAAACATCC</genome_strand>
        <mrna_strand>AGGCCAGCCAATTGCATTGTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAG..................................................................................................................................................................ATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTTTGTATACAGCGGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGATTGTGCAAGACCTCTTGTTCAAATTGAAGATGTAGAAAAG.................................................................................................................................................................................................................................................GTCCTGAAGGATGGTTGGTTGGTTGGAGCACCAGTTCTTGGCGTTCCTGCCAAAGGTACAATCAAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGCCCCCTCAG.......................................................................ATAATCAAGCCTGAGTTGCTTAAGAAGGGTTTCGAGCTTGTCAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGACTTGAAGTAACAGATGATGTATCAATAGTGGAGCACCTTAAACATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280064" ref_strand="-" ref_description="SGN-E280064 [cLEL-7-P19](-)">
      <seq>gcacgagtgattcaaactccaaactcgcatgcatccatgactctgcaagacctcttgtacaaattgaagatgtagaaaaggtcctgaaggatggttggctggttggagcagcagttcttggtgttcctgccaaagctacaatcaaagaggcaaacagtgaatctttcgttgtgaagactcttgacaggaaaacactttgggaaatgcagacacctcagataatcaaacctgagttgcttaagaagggtttcgagcttgtcaacagggaaggacttgaagtaacagatgatgtatcaatagtggagcaccttaaacatccagtatatattactgaaggctcttacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="37507" stop="40536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37806" g_stop="37887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37888" i_stop="38128" i_length="241">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38129" g_stop="38197" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="149" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38198" i_stop="39113" i_length="916">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39114" g_stop="39182" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="218" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39183" i_stop="39253" i_length="71">
            <donor d_prob="0.767" d_score="1.00"/>
            <acceptor a_prob="0.016" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39254" g_stop="39300" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="265" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39301" i_stop="40155" i_length="855">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40156" g_stop="40236" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="346" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E280064" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280064" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37806" e_stop="37887"/>
          <exon e_start="38129" e_stop="38197"/>
          <exon e_start="39114" e_stop="39182"/>
          <exon e_start="39254" e_stop="39300"/>
          <exon e_start="40156" e_stop="40236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAGGTTTGATCATTGCATAATCTCCTCCTCCTCCTTTAGTCTCTTGGCTTTGGCAAGAGATTTCTGGTATTGTGGGAAGTACTCCTGCCGAATATAACATGAATTCTGGAGATATCCATCTTCTTTATCTTTAATTCTGCATCACATTATATGCAGATCGTTGACATTTTATAAAGGTCATATGTATGTTTAAGATTCTGAAGGACAAATCTTCCTTTACTTTTTCCAAGAATCTTCTCTGCAGGTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAGGTAGCTCTTAATTATTGCTAGTATCTGATTTGTAATAAAATATGAAGCTTCAGGTGGCTGACCATCTCCCATGAGAGAATGAAATGGTAGCAAATTGAAGCATGTTCTGAGTTTTATGTAGCCTTTTTGTAAGTAGATATTCAAGCTTATAGTTTCCTGTTAGAGACATCAACTTATATTTCTAAAGCAACTCCCGTACAAGGAAGGACAATGTACTATGAGACTTGCTCTTTTTGCTATCTTGGCAGGCTAATTGCTCTAGGCTTTTACTGTGGAACTATTAGGATGTCGTGTAACCTATGTTCTATTTCATCTATATCGATATTGCATAATCTCCTAAACATGTTTCAGGTGCTTCTAAGTTGTAGCATGGTACTATTAAGTCTCAATTTTGGTCAATAGATTTTCACTTTTATTATTTACTAGTATGCATTATCCTATTATCACCAAATGGTTATATCTGTTTGATATTTGTTTAATAAGAAGTATTTTTAGGCTGTCCTACAGTTGCTGTCTAGTATTATTTCTCCTTTAATTTCTCTTGTTGACAGAAATTAACGTTGGCATTATAGTTCTATTAAACATTTGGAGGGAGATAAAATGCATACTTATTCAGTTATATAATATGAAAAGTAAGACCACATTTTATAATACCCTGCAGGACCTTCATTATCCGTGCTTTAAATATGATGGCCAGATAAAATTAAGGCATTTGCTAGGAAATTTAAATATAGCCCTCTATCTCTCACCTCCCCTATTTGACCTGACTGGCATGAATGTAAAACTGTTGACAGGAATGTTAATAAAGCCTCTATTTAAGTGCATTGGCATCGCACAGAAGGTCTCCCTCCTTATATTATATCACTTTTACTTGGTTCTGATTGGTCTATTAATTTTCATGTCAATTCTGGTGCAGGCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAGGTAGTAAGCCTTTCTCTTTTAGAATTTTTTCTGCAGTTGCAGAGACCGTTAAACAATTTTGTCTGGCACAGATAATCAAACCTGAGTTGCTTAAGAAGGGTTTCGAGCTTGTCAACAGGTAGTCCTATATTCACGTCTCTAACAAATTTTGACTTTCAATATTCAATAAGCTTGTGCTTCTTTATTAGAGTTTCAATGTCTAGTATGTTGTCCAATAATTTTATCATGATTATGCATAGAACATAAGTTTTATTGTTGAGAAGTTTGAGAATGACAGGCAGTTTGAAGCATGTCATTTAAGTTAGTCGGCATGATATTTCAACTTTCTTTTCTAGGTTAGAGATGATAAGCCTGGGCCAAGTGGGGTTAGAAACAAATTAGTTCTCAAGACTTGTACATCTTTATTAGGGCCTTTGATACTGTTACTTGATTGAAGATAGTGCTACATTTTCTTTTTCTTTTTCTGGCAAGGACACCACAGTTATTTAAAGAGCAAAATTGTTCTACATTTTTATATTAGAGACACCTTTTTAATTTGGATAATATATGGATACTTCCCCCATCACCCGCCAGTTAAGTTTGTTGCACTTATCTCTGGACCTTTCAAAATACACCCATAACCTCCTCAACTATGATGGACCAAAGTTCATTGTTGGTTTTCGCTCGAGTAACTAGTAGGTCTCTCACCTAGCATGAGGGTAAGACTGGTTCTAGGTCACGTTCCTTTCAAAAACACCAAACTCTAGACCAAAATAAACTTAATGAATTGAGAATATAACGAAGTCCAAGAGAAAGTAAAGGATCAGGCAACTTGAAAAGAAAAGAAAAAGTGTCAGCACATCCATCTGCCACTCTTTATCTCCATTAAATGGAAGAAAGATGAATTAATGGGGCAAACTGAAAAGGAAAAAGAAAAACGGAGGATATAAACAAATATTACCCTGCTTATTTTGTGTTTCATGTGGTCTTTTAGGGAAGGACTTGAAGTAACAGATGATGTATCAATAGTGGAGCACCTTAAACATCCAGTATATATTACTGAAGGCTCTTACAC</genome_strand>
        <mrna_strand>GCACG-AG-TGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAG.................................................................................................................................................................................................................................................GTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAG.......................................................................ATAATCAAACCTGAGTTGCTTAAGAAGGGTTTCGAGCTTGTCAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGACTTGAAGTAACAGATGATGTATCAATAGTGGAGCACCTTAAACATCCAGTATATATTACTGAAGGCTCTTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716695" ref_strand="+" ref_description="SGN-E716695 [FB17DB05]">
      <seq>agcagttcttggtgttcctgccaaagctacaatcaaagaggcaaacagtgaatctttcgttgtgaagactcttgacaggaaaacactttgggaaatgcagacacctcagataatcaaacctgagttgcttaagaagggtttcgagcttgtcaacagggaaggacttgaagtaacagatgatgtatcaatagtggagcaccttaaacatccagtatatattactgaaggctcttacactaacataaaggttacaacgcctgatgatttgcttcttgcagaaagaatattgaatattgaagaatcttagggttttcaattttcttaggctttttttttgttcaaacattataattccctggaaatttgtattctgaataggtgaagttaaccttccacaagagttcctcagaaaattgagtcttgtaaacttattggcaaaagaaagcaacattcttttcaaggttttcnaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="37858" stop="40875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38158" g_stop="38197" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38198" i_stop="39113" i_length="916">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39114" g_stop="39182" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="109" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39183" i_stop="39253" i_length="71">
            <donor d_prob="0.767" d_score="1.00"/>
            <acceptor a_prob="0.016" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39254" g_stop="39300" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="156" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39301" i_stop="40155" i_length="855">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40156" g_stop="40246" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="247" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40247" i_stop="40355" i_length="109">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40356" g_stop="40569" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="461" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="494"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E716695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38158" e_stop="38197"/>
          <exon e_start="39114" e_stop="39182"/>
          <exon e_start="39254" e_stop="39300"/>
          <exon e_start="40156" e_stop="40246"/>
          <exon e_start="40356" e_stop="40569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAGGTAGCTCTTAATTATTGCTAGTATCTGATTTGTAATAAAATATGAAGCTTCAGGTGGCTGACCATCTCCCATGAGAGAATGAAATGGTAGCAAATTGAAGCATGTTCTGAGTTTTATGTAGCCTTTTTGTAAGTAGATATTCAAGCTTATAGTTTCCTGTTAGAGACATCAACTTATATTTCTAAAGCAACTCCCGTACAAGGAAGGACAATGTACTATGAGACTTGCTCTTTTTGCTATCTTGGCAGGCTAATTGCTCTAGGCTTTTACTGTGGAACTATTAGGATGTCGTGTAACCTATGTTCTATTTCATCTATATCGATATTGCATAATCTCCTAAACATGTTTCAGGTGCTTCTAAGTTGTAGCATGGTACTATTAAGTCTCAATTTTGGTCAATAGATTTTCACTTTTATTATTTACTAGTATGCATTATCCTATTATCACCAAATGGTTATATCTGTTTGATATTTGTTTAATAAGAAGTATTTTTAGGCTGTCCTACAGTTGCTGTCTAGTATTATTTCTCCTTTAATTTCTCTTGTTGACAGAAATTAACGTTGGCATTATAGTTCTATTAAACATTTGGAGGGAGATAAAATGCATACTTATTCAGTTATATAATATGAAAAGTAAGACCACATTTTATAATACCCTGCAGGACCTTCATTATCCGTGCTTTAAATATGATGGCCAGATAAAATTAAGGCATTTGCTAGGAAATTTAAATATAGCCCTCTATCTCTCACCTCCCCTATTTGACCTGACTGGCATGAATGTAAAACTGTTGACAGGAATGTTAATAAAGCCTCTATTTAAGTGCATTGGCATCGCACAGAAGGTCTCCCTCCTTATATTATATCACTTTTACTTGGTTCTGATTGGTCTATTAATTTTCATGTCAATTCTGGTGCAGGCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAGGTAGTAAGCCTTTCTCTTTTAGAATTTTTTCTGCAGTTGCAGAGACCGTTAAACAATTTTGTCTGGCACAGATAATCAAACCTGAGTTGCTTAAGAAGGGTTTCGAGCTTGTCAACAGGTAGTCCTATATTCACGTCTCTAACAAATTTTGACTTTCAATATTCAATAAGCTTGTGCTTCTTTATTAGAGTTTCAATGTCTAGTATGTTGTCCAATAATTTTATCATGATTATGCATAGAACATAAGTTTTATTGTTGAGAAGTTTGAGAATGACAGGCAGTTTGAAGCATGTCATTTAAGTTAGTCGGCATGATATTTCAACTTTCTTTTCTAGGTTAGAGATGATAAGCCTGGGCCAAGTGGGGTTAGAAACAAATTAGTTCTCAAGACTTGTACATCTTTATTAGGGCCTTTGATACTGTTACTTGATTGAAGATAGTGCTACATTTTCTTTTTCTTTTTCTGGCAAGGACACCACAGTTATTTAAAGAGCAAAATTGTTCTACATTTTTATATTAGAGACACCTTTTTAATTTGGATAATATATGGATACTTCCCCCATCACCCGCCAGTTAAGTTTGTTGCACTTATCTCTGGACCTTTCAAAATACACCCATAACCTCCTCAACTATGATGGACCAAAGTTCATTGTTGGTTTTCGCTCGAGTAACTAGTAGGTCTCTCACCTAGCATGAGGGTAAGACTGGTTCTAGGTCACGTTCCTTTCAAAAACACCAAACTCTAGACCAAAATAAACTTAATGAATTGAGAATATAACGAAGTCCAAGAGAAAGTAAAGGATCAGGCAACTTGAAAAGAAAAGAAAAAGTGTCAGCACATCCATCTGCCACTCTTTATCTCCATTAAATGGAAGAAAGATGAATTAATGGGGCAAACTGAAAAGGAAAAAGAAAAACGGAGGATATAAACAAATATTACCCTGCTTATTTTGTGTTTCATGTGGTCTTTTAGGGAAGGACTTGAAGTAACAGATGATGTATCAATAGTGGAGCACCTTAAACATCCAGTATATATTACTGAAGGCTCTTACACTAACATAAAGGTAGCCAACTAAACATATCGTCTTTTTGGCTCATAGTAGTATCCTCTCTACTGCACTTTGAGCTGCTTATGGATGCGTCAATATATTCAAATGTTGTTATGATATGCAGGTTACAACGCCTGATGATTTGCTTCTTGCAGAAAGAATATTGAATATTGAAGAATCTTAGGGTTTTCAATTTTCTTAGGCTTTTTTTTTGTTCAAACATTATAATTCCCTGGAAATTTGTATTCTGAATAGGTGAAGTTAACCTTCCACAAGAGTTCCTCAGAAAATTGAGTCTTGTAAACTTATTGGCAAAAGAAAGCAACATTCTTTTCAAG</genome_strand>
        <mrna_strand>AGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAG.......................................................................ATAATCAAACCTGAGTTGCTTAAGAAGGGTTTCGAGCTTGTCAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGACTTGAAGTAACAGATGATGTATCAATAGTGGAGCACCTTAAACATCCAGTATATATTACTGAAGGCTCTTACACTAACATAAAG.............................................................................................................GTTACAACGCCTGATGATTTGCTTCTTGCAGAAAGAATATTGAATATTGAAGAATCTTAGGGTTTTCAATTTTCTTAGGCTTTTTTTTTGTTCAAACATTATAATTCCCTGGAAATTTGTATTCTGAATAGGTGAAGTTAACCTTCCACAAGAGTTCCTCAGAAAATTGAGTCTTGTAAACTTATTGGCAAAAGAAAGCAACATTCTTTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374673" ref_strand="+" ref_description="SGN-E374673 [TUS-15-P7](-)">
      <seq>caaagctacaatcaaagaggcaaacagtgaatctttcgttgtgaagactcttgacaggaaaacactttgggaaatgcagacacctcagataatcaaacctgagttgcttaagaagggtttcgagcttgtcaacagggaaggacttgaagtaacagatgatgtatcaatagtggagcaccttaaacatccagtatatattactgaaggctcttacactaacataaaggttacaacgcctgatgatttgcttcttgcagaaagaatattgaatattgaagaatcttagggttttcaattttcttaggctttttttttgttcaaacattataattccctggaaatttgtattctgaataggtgaagttaaccttccacaagagttcctcagaaaattgagtcttgtaaacttattggcaaaagaaagcaacattcttttcaaggttttcagctcatgactgagactttgacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="37879" stop="40901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38179" g_stop="38197" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38198" i_stop="39113" i_length="916">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39114" g_stop="39182" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="88" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39183" i_stop="39253" i_length="71">
            <donor d_prob="0.767" d_score="1.00"/>
            <acceptor a_prob="0.016" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39254" g_stop="39300" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="135" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39301" i_stop="40155" i_length="855">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40156" g_stop="40246" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="226" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40247" i_stop="40355" i_length="109">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40356" g_stop="40601" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="472" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E374673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38179" e_stop="38197"/>
          <exon e_start="39114" e_stop="39182"/>
          <exon e_start="39254" e_stop="39300"/>
          <exon e_start="40156" e_stop="40246"/>
          <exon e_start="40356" e_stop="40601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCTACAATCAAAGAGGTAGCTCTTAATTATTGCTAGTATCTGATTTGTAATAAAATATGAAGCTTCAGGTGGCTGACCATCTCCCATGAGAGAATGAAATGGTAGCAAATTGAAGCATGTTCTGAGTTTTATGTAGCCTTTTTGTAAGTAGATATTCAAGCTTATAGTTTCCTGTTAGAGACATCAACTTATATTTCTAAAGCAACTCCCGTACAAGGAAGGACAATGTACTATGAGACTTGCTCTTTTTGCTATCTTGGCAGGCTAATTGCTCTAGGCTTTTACTGTGGAACTATTAGGATGTCGTGTAACCTATGTTCTATTTCATCTATATCGATATTGCATAATCTCCTAAACATGTTTCAGGTGCTTCTAAGTTGTAGCATGGTACTATTAAGTCTCAATTTTGGTCAATAGATTTTCACTTTTATTATTTACTAGTATGCATTATCCTATTATCACCAAATGGTTATATCTGTTTGATATTTGTTTAATAAGAAGTATTTTTAGGCTGTCCTACAGTTGCTGTCTAGTATTATTTCTCCTTTAATTTCTCTTGTTGACAGAAATTAACGTTGGCATTATAGTTCTATTAAACATTTGGAGGGAGATAAAATGCATACTTATTCAGTTATATAATATGAAAAGTAAGACCACATTTTATAATACCCTGCAGGACCTTCATTATCCGTGCTTTAAATATGATGGCCAGATAAAATTAAGGCATTTGCTAGGAAATTTAAATATAGCCCTCTATCTCTCACCTCCCCTATTTGACCTGACTGGCATGAATGTAAAACTGTTGACAGGAATGTTAATAAAGCCTCTATTTAAGTGCATTGGCATCGCACAGAAGGTCTCCCTCCTTATATTATATCACTTTTACTTGGTTCTGATTGGTCTATTAATTTTCATGTCAATTCTGGTGCAGGCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAGGTAGTAAGCCTTTCTCTTTTAGAATTTTTTCTGCAGTTGCAGAGACCGTTAAACAATTTTGTCTGGCACAGATAATCAAACCTGAGTTGCTTAAGAAGGGTTTCGAGCTTGTCAACAGGTAGTCCTATATTCACGTCTCTAACAAATTTTGACTTTCAATATTCAATAAGCTTGTGCTTCTTTATTAGAGTTTCAATGTCTAGTATGTTGTCCAATAATTTTATCATGATTATGCATAGAACATAAGTTTTATTGTTGAGAAGTTTGAGAATGACAGGCAGTTTGAAGCATGTCATTTAAGTTAGTCGGCATGATATTTCAACTTTCTTTTCTAGGTTAGAGATGATAAGCCTGGGCCAAGTGGGGTTAGAAACAAATTAGTTCTCAAGACTTGTACATCTTTATTAGGGCCTTTGATACTGTTACTTGATTGAAGATAGTGCTACATTTTCTTTTTCTTTTTCTGGCAAGGACACCACAGTTATTTAAAGAGCAAAATTGTTCTACATTTTTATATTAGAGACACCTTTTTAATTTGGATAATATATGGATACTTCCCCCATCACCCGCCAGTTAAGTTTGTTGCACTTATCTCTGGACCTTTCAAAATACACCCATAACCTCCTCAACTATGATGGACCAAAGTTCATTGTTGGTTTTCGCTCGAGTAACTAGTAGGTCTCTCACCTAGCATGAGGGTAAGACTGGTTCTAGGTCACGTTCCTTTCAAAAACACCAAACTCTAGACCAAAATAAACTTAATGAATTGAGAATATAACGAAGTCCAAGAGAAAGTAAAGGATCAGGCAACTTGAAAAGAAAAGAAAAAGTGTCAGCACATCCATCTGCCACTCTTTATCTCCATTAAATGGAAGAAAGATGAATTAATGGGGCAAACTGAAAAGGAAAAAGAAAAACGGAGGATATAAACAAATATTACCCTGCTTATTTTGTGTTTCATGTGGTCTTTTAGGGAAGGACTTGAAGTAACAGATGATGTATCAATAGTGGAGCACCTTAAACATCCAGTATATATTACTGAAGGCTCTTACACTAACATAAAGGTAGCCAACTAAACATATCGTCTTTTTGGCTCATAGTAGTATCCTCTCTACTGCACTTTGAGCTGCTTATGGATGCGTCAATATATTCAAATGTTGTTATGATATGCAGGTTACAACGCCTGATGATTTGCTTCTTGCAGAAAGAATATTGAATATTGAAGAATCTTAGGGTTTTCAATTTTCTTAGGCTTTTTTTTTGTTCAAACATTATAATTCCCTGGAAATTTGTATTCTGAATAGGTGAAGTTAACCTTCCACAAGAGTTCCTCAGAAAATTGAGTCTTGTAAACTTATTGGCAAAAGAAAGCAACATTCTTTTCAAGGTTTTCAGCTCATGACTGAGACTTTGACAAAA</genome_strand>
        <mrna_strand>CAAAGCTACAATCAAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAG.......................................................................ATAATCAAACCTGAGTTGCTTAAGAAGGGTTTCGAGCTTGTCAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGACTTGAAGTAACAGATGATGTATCAATAGTGGAGCACCTTAAACATCCAGTATATATTACTGAAGGCTCTTACACTAACATAAAG.............................................................................................................GTTACAACGCCTGATGATTTGCTTCTTGCAGAAAGAATATTGAATATTGAAGAATCTTAGGGTTTTCAATTTTCTTAGGCTTTTTTTTTGTTCAAACATTATAATTCCCTGGAAATTTGTATTCTGAATAGGTGAAGTTAACCTTCCACAAGAGTTCCTCAGAAAATTGAGTCTTGTAAACTTATTGGCAAAAGAAAGCAACATTCTTTTCAAGGTTTTCAGCTCATGACTGAGACTTTGACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433270" ref_strand="-" ref_description="SGN-E433270 [STM-58-A18]">
      <seq>gaaattccagtgcagagaatagaatccatcatacgtgagcagaggttagaaacagcatggttacaagcaatggagaaaggcactcctggatcaatgagtcgcctgaaacctgagaggaaccaagtcctgccacaagatggtctttatcataacaaccaactagaaccaactaattcgagggaactgtcctcccagcattggcatgatgatctaaatgaggaaattagaagtcttaagatgattgacggaaaggctgttcagaaggatcagaccagtaaaaagggtgacagttatcccatttcaccaagtttgttgcataatggcatatatgccagtaatttcagcaaagagagcatgggttatgaatcaggatcaggagctgggggttgtttctgttggaacaacaccagaccccaaagaaggggaaaggttaaacaagggacccctgtgagaccacctaaaggcgggcggttcttatggtttggggagtgtgcaaaaccaaggagaacagagagtagattgagaagatagcaatgaagctccagatataagaatgttaattttcttttagttggtctttctgtatttattccatctgctggggccattcaattctttcatggatatcaagttcattaaaggattatgtaaagttattactcagggcatctgaaatttcttgtagtccagtcagttcagtgaaagagtgaaaggtcaattagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="42583" stop="40592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42283" g_stop="41928" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41927" i_stop="41321" i_length="607">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41320" g_stop="41248" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="429" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41247" i_stop="41165" i_length="83">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.887" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41164" g_stop="40872" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="723" r_length="294" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E433270" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433270" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42283" e_stop="41928"/>
          <exon e_start="41320" e_stop="41248"/>
          <exon e_start="41164" e_stop="40872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCCAGTGCAGAGAATAGAATCCATCATACGTGAGCAGAGGTTAGAAACAGCATGGTTACAAGCAATGGAGAAAGGCACTCCTGGATCAATGAGTCGCCTGAAACCTGAGAGGAACCAAGTCCTGCCACAAGATGGTCTTTATCATAACAACCAACTAGAACCAATTAATTCAAGGGAACTGTTCTCCCAGCATTGGCATGATGATCTAAATGAGGAAATTAGAAGTCTGAAGATGATTGACGGAAAGGCTGTTCAGAAGGATCAAACCAGTAAAAAGGGCGACAGTTATCCCATTTCACCAAGTTTGTTGCATAATGGCATATATGGCAGTAATTTCAGCAAAGAGAGCATGTAAGTTCTTGCACTTATCTGTTCATAAGTTATCTCAGTATACACTAAGTTAACATATGTCAACACTTACATAACACAGTATACTTCTCCTGATGCAATGACAACTTTTTGTGGCTTGCTTTAGATGTAGATGAGCTCTTTCTTGCCGAGAGATTTTGAATCCACAGAAAGAATCAATAATTTAAAATTGTTCAGATACTCTAACTTGTCAGGAGGTTGCAACCATCTGAGAAGTGTAATGTATCCCTAATTCCGAAAACTAGAAAGACAGACACTGCTTAGTGGTTGAGCATCTTATTCTTATTTATCAATATGTAACAACTGGTAGTAGATTATATTTGCAATATTCTCACGTATCTTTATTATATATGGAGTCTTACTATTAGTTTTAACTCAATTGCTTGATCCTTGGTTATCTAACAATAATATCTCATTCTTACACCCACCCCCATCTTCTGCTTTAAATGAATACATATATCATGTTTTGTATACTAACAATGCCAGCCTTATCCATTTGCTTGTTGCTTCCTAGGGAGTTAGCTCTATAATTGGCAGGTTTACTTTTTTTTTTTTTCTATATTTAACTCACTGTTTGGCTTCTCTACAGGGGTTATGAATCAGGATCTGGAGCTGGAGGTTGTTTCTGTTGGAACAACAGCAGACCCCAAAGAAGGGGCAAGGTATGTTTTTTGGACAATCTGTAACTAATTTGTTTCTATAATCAGAAACCTAGAAACATACCTGACATTTAAAATACTAACAGGTTAAACAAGGGACCCCTGTGAGACCTCCTAAAGGTGGACGGTTCTTATGGTTTGGGGAGTGTGCAAAACCAAGGAGAACAGAGAGTAGATTGAGAAGATAGCATTGAAGCTCCAGAT-TAAGAATGTTCATTTTCTTTTAGTTGGTC-TACTGTATTTATTCCATCTGCTGGGGCCATTCTATTCTTTCATGGATATCAAGCTCATTAAAGGATTATGTAAAGTTGTTGCTCTGGGCTTCTGAAATTTCATTTAGTCCACTCAGTTCAATGAAATTAATAAAAGGTCATTTAGG</genome_strand>
        <mrna_strand>GAAATTCCAGTGCAGAGAATAGAATCCATCATACGTGAGCAGAGGTTAGAAACAGCATGGTTACAAGCAATGGAGAAAGGCACTCCTGGATCAATGAGTCGCCTGAAACCTGAGAGGAACCAAGTCCTGCCACAAGATGGTCTTTATCATAACAACCAACTAGAACCAACTAATTCGAGGGAACTGTCCTCCCAGCATTGGCATGATGATCTAAATGAGGAAATTAGAAGTCTTAAGATGATTGACGGAAAGGCTGTTCAGAAGGATCAGACCAGTAAAAAGGGTGACAGTTATCCCATTTCACCAAGTTTGTTGCATAATGGCATATATGCCAGTAATTTCAGCAAAGAGAGCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTATGAATCAGGATCAGGAGCTGGGGGTTGTTTCTGTTGGAACAACACCAGACCCCAAAGAAGGGGAAAG...................................................................................GTTAAACAAGGGACCCCTGTGAGACCACCTAAAGGCGGGCGGTTCTTATGGTTTGGGGAGTGTGCAAAACCAAGGAGAACAGAGAGTAGATTGAGAAGATAGCAATGAAGCTCCAGATATAAGAATGTTAATTTTCTTTTAGTTGGTCTTTCTGTATTTATTCCATCTGCTGGGGCCATTCAATTCTTTCATGGATATCAAGTTCATTAAAGGATTATGTAAAGTTATTACTCAGGGCATCTGAAATTTCTTGTAGTCCAGTCAGTTCAGTGAAA-GAGTGAAAGGTCAATTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E598652" ref_strand="+" ref_description="SGN-E598652 [51622]">
      <seq>atctaaatgaggaaattagaagtcttaagatgattgacggaaaggctgttcagaaggatcagaccagtaaaaagggtgacagttatcccatttcaccaagtttgttgcataatggcatatatgccagtaatttcagcaaagagagcatgggttatgaatcaggatcaggagctgggggttgtttctgttggaacaacaccagaccccaaagaaggggaaaggttaaacaagggacccctgtgagaccacctaaaggcgggcggttcttatggtttggggagtgtgcaaaaccaaggagaacagagagtagattgagaagatagcaatgaagctccagatataagaatgttaattttcttttagttggtctttctgtatttattccatctgctggggccattctattctttcatggatatcaagctcattaaaggattatgtaaagttattgctcagggcttctgaaatttcttgtagtccagtcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="42375" stop="40600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42075" g_stop="41928" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41927" i_stop="41321" i_length="607">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41320" g_stop="41248" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="221" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41247" i_stop="41165" i_length="83">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.887" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41164" g_stop="40900" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="488" r_length="267" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E598652" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42075" e_stop="41928"/>
          <exon e_start="41320" e_stop="41248"/>
          <exon e_start="41164" e_stop="40900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAAATGAGGAAATTAGAAGTCTGAAGATGATTGACGGAAAGGCTGTTCAGAAGGATCAAACCAGTAAAAAGGGCGACAGTTATCCCATTTCACCAAGTTTGTTGCATAATGGCATATATGGCAGTAATTTCAGCAAAGAGAGCATGTAAGTTCTTGCACTTATCTGTTCATAAGTTATCTCAGTATACACTAAGTTAACATATGTCAACACTTACATAACACAGTATACTTCTCCTGATGCAATGACAACTTTTTGTGGCTTGCTTTAGATGTAGATGAGCTCTTTCTTGCCGAGAGATTTTGAATCCACAGAAAGAATCAATAATTTAAAATTGTTCAGATACTCTAACTTGTCAGGAGGTTGCAACCATCTGAGAAGTGTAATGTATCCCTAATTCCGAAAACTAGAAAGACAGACACTGCTTAGTGGTTGAGCATCTTATTCTTATTTATCAATATGTAACAACTGGTAGTAGATTATATTTGCAATATTCTCACGTATCTTTATTATATATGGAGTCTTACTATTAGTTTTAACTCAATTGCTTGATCCTTGGTTATCTAACAATAATATCTCATTCTTACACCCACCCCCATCTTCTGCTTTAAATGAATACATATATCATGTTTTGTATACTAACAATGCCAGCCTTATCCATTTGCTTGTTGCTTCCTAGGGAGTTAGCTCTATAATTGGCAGGTTTACTTTTTTTTTTTTTCTATATTTAACTCACTGTTTGGCTTCTCTACAGGGGTTATGAATCAGGATCTGGAGCTGGAGGTTGTTTCTGTTGGAACAACAGCAGACCCCAAAGAAGGGGCAAGGTATGTTTTTTGGACAATCTGTAACTAATTTGTTTCTATAATCAGAAACCTAGAAACATACCTGACATTTAAAATACTAACAGGTTAAACAAGGGACCCCTGTGAGACCTCCTAAAGGTGGACGGTTCTTATGGTTTGGGGAGTGTGCAAAACCAAGGAGAACAGAGAGTAGATTGAGAAGATAGCATTGAAGCTCCAGAT-TAAGAATGTTCATTTTCTTTTAGTTGGTC-TACTGTATTTATTCCATCTGCTGGGGCCATTCTATTCTTTCATGGATATCAAGCTCATTAAAGGATTATGTAAAGTTGTTGCTCTGGGCTTCTGAAATTTCATTTAGTCCACTCAGTT</genome_strand>
        <mrna_strand>ATCTAAATGAGGAAATTAGAAGTCTTAAGATGATTGACGGAAAGGCTGTTCAGAAGGATCAGACCAGTAAAAAGGGTGACAGTTATCCCATTTCACCAAGTTTGTTGCATAATGGCATATATGCCAGTAATTTCAGCAAAGAGAGCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTATGAATCAGGATCAGGAGCTGGGGGTTGTTTCTGTTGGAACAACACCAGACCCCAAAGAAGGGGAAAG...................................................................................GTTAAACAAGGGACCCCTGTGAGACCACCTAAAGGCGGGCGGTTCTTATGGTTTGGGGAGTGTGCAAAACCAAGGAGAACAGAGAGTAGATTGAGAAGATAGCAATGAAGCTCCAGATATAAGAATGTTAATTTTCTTTTAGTTGGTCTTTCTGTATTTATTCCATCTGCTGGGGCCATTCTATTCTTTCATGGATATCAAGCTCATTAAAGGATTATGTAAAGTTATTGCTCAGGGCTTCTGAAATTTCTTGTAGTCCAGTCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730073" ref_strand="+" ref_description="SGN-E730073 [LA22DH08]">
      <seq>aacgtgttggatgatatctggatcagatgcattgataaatgccactccaacactttgaagcaattgcttcatacttgtggaacacttctgtcgatctctgaagttgaaggtggttttgttgctcatattgcctttcgtgatagcaaggttaaattgagagcagagaggtttcttagcagtatcacgaattcatttgaaactattttaaggagcaatgtagaggttagacttgttctgctaccagatgcggagacatctgatgacagtggaaagccaattacattgatcaattctggaggtttgaaacagatgggttcgcaaaataatatggtgaagagggaaatagcagttagctcaaatcaggatccgctgcaggtatcaagaagtagctttaatgatcctgaaagcaagatggttgaaacttttgagtcagcaagtggaaatgctggaacgagtagttctaaagagagaatctcagaaattccagtgcagagaatagaatccatcatacgtgagcagaggttagaaacagcatggttacaagcaatggagaaaggcactcctggatcaatgagtcgcctgaaacctgagaggaaccaagtcctgccacaagatggtctttatcataacaaccaactagaaccaattaattcaagggaactgttctcccagcattggcatgatgatctaaatgaggaaattagaagtctgaagatgattgacggaaaggctgttcagaaggatcaaaccagtaaaaagggcgacagttatcccatttcaccaagtttgttgcataatggcatatatggcagtaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="43868" stop="41643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43568" g_stop="43460" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43459" i_stop="42652" i_length="808">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42651" g_stop="41943" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="818" r_length="709" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E730073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43568" e_stop="43460"/>
          <exon e_start="42651" e_stop="41943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAGGTAAATTTCTCTTGCTCCACAATTGTAGGACTGAATTAGGTCTTCTGGTTCTCTTTTTGATCTTCAGCTCTCACAATTGTTAAACAGTTGACATAATAAGGAATACACAATATTTTGAACTGCATTGTGTTAAACTTGAAGCTGAACCCGAATCTTTACAGAATTTAGTTAAAGGTAGAGGAAACTTGGGATGGAAGGGCTGTGGGCACTTAAATTGACTTATTTTCTGCTTGCTGTACAGAATGTCATATAGTATGCTAAACCAATTCTTAAAATATAAAGCTATGCTAAACCAATTCTTAAAATAGTTTAGACCAAGATTATTTTATTCTGTTGTAAAACTTTTGAAGGGGAACTGCACTTTTGTTGTAGTACACCTGTGGATATATAGACTCAAGTTACCAGTTTCAAAAAAAAGATAAAGCTTTTGAAGGCGGAACAAAAAACTCTCAAGACTCAAGTTAGTGATATTTGAGACTTAAAGCTGCTAGGTATATAATCTAGTCAAATTAAACTTTTTGATGTTGAACTAATTGCAATCGGATTGAATGACCAAAATAGCTTTGTCTCTAAGATGCTAATAGGTATCTTACCATTGATCAGCTAGGTCAAAATAGAGTGCCTCTAATTTCAAGGATAGGAGAAAGATCAAGGTTAAGTTCAACATTTTTCTATTTCTGTATCTTACAAGGAAGAAATCTATTTGTGGGTTCACTAATAATGGTGATGCAATCTACTCATTCAACTTAGACACTACTGTGGAAAGCTACTACTATGACTAATCAATTGTTTGGACCTATTGTCTCAGGTGGTTTTGTTGCTCATATTGCCTTTCGTGATAGCAAGGTTAAATTGAGAGCAGAGAGGTTTCTTAGCAGTATCACGAATTCATTTGAAACTATTTTAAGGAGCAATGTAGAGGTTAGACTTGTTCTGCTACCAGATGCGGAGACATCTGATGACAGTGGAAAGCCAATTACATTGATCAATTCTGGAGGTTTGAAACAGATGGGTTCGCAAAATAATATGGTGAAGAGGGAAATAGCAGTTAGCTCAAATCAGGATCCGCTGCAGGTATCAAGAAGTAGCTTTAATGATCCTGAAAGCAAGATGGTTGAAACTTTTGAGTCAGCAAGTGGAAATGCTGGAACGAGTAGTTCTAAAGAGAGAATCTCAGAAATTCCAGTGCAGAGAATAGAATCCATCATACGTGAGCAGAGGTTAGAAACAGCATGGTTACAAGCAATGGAGAAAGGCACTCCTGGATCAATGAGTCGCCTGAAACCTGAGAGGAACCAAGTCCTGCCACAAGATGGTCTTTATCATAACAACCAACTAGAACCAATTAATTCAAGGGAACTGTTCTCCCAGCATTGGCATGATGATCTAAATGAGGAAATTAGAAGTCTGAAGATGATTGACGGAAAGGCTGTTCAGAAGGATCAAACCAGTAAAAAGGGCGACAGTTATCCCATTTCACCAAGTTTGTTGCATAATGGCATATATGGCAGTAATTT</genome_strand>
        <mrna_strand>AACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTTGTTGCTCATATTGCCTTTCGTGATAGCAAGGTTAAATTGAGAGCAGAGAGGTTTCTTAGCAGTATCACGAATTCATTTGAAACTATTTTAAGGAGCAATGTAGAGGTTAGACTTGTTCTGCTACCAGATGCGGAGACATCTGATGACAGTGGAAAGCCAATTACATTGATCAATTCTGGAGGTTTGAAACAGATGGGTTCGCAAAATAATATGGTGAAGAGGGAAATAGCAGTTAGCTCAAATCAGGATCCGCTGCAGGTATCAAGAAGTAGCTTTAATGATCCTGAAAGCAAGATGGTTGAAACTTTTGAGTCAGCAAGTGGAAATGCTGGAACGAGTAGTTCTAAAGAGAGAATCTCAGAAATTCCAGTGCAGAGAATAGAATCCATCATACGTGAGCAGAGGTTAGAAACAGCATGGTTACAAGCAATGGAGAAAGGCACTCCTGGATCAATGAGTCGCCTGAAACCTGAGAGGAACCAAGTCCTGCCACAAGATGGTCTTTATCATAACAACCAACTAGAACCAATTAATTCAAGGGAACTGTTCTCCCAGCATTGGCATGATGATCTAAATGAGGAAATTAGAAGTCTGAAGATGATTGACGGAAAGGCTGTTCAGAAGGATCAAACCAGTAAAAAGGGCGACAGTTATCCCATTTCACCAAGTTTGTTGCATAATGGCATATATGGCAGTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417770" ref_strand="+" ref_description="SGN-E417770 [STM-26-E23]">
      <seq>gtttgaacgagacagaactggatagattgaagcatgcactaaagcttctttctgaggcagagaaacaactaagggtttcaagtgaacgttcgacttggtttacagcaaccctgctgcagttgggttctgcgacttcactagatcgaactcattcaggaagcagtcacaggctgagttctaagacaacagaggaagacccttctagtacatctagagaagctatatccctgaggcagagaactgatattcaccatgcaccatgtggtccacataatgacactaaggacagcaagacttcatctaggtgccccaacacaaacgtgttggatgatatctggatcagatgcattgataaatgccactccaacactttgaagcaattgcttcatacttgtggaacacttctgtcgatctctgaagttgaaggtggttttgttgctcatattgcctttcgtgatagcaaggttaaattgagagcagagaggtttcttagcagtatcacgaattcatttgaaactattttacggagcaatgtagaggttagacttgttctcctaccggatggggagacatctgatgacagtggaaagccaattacattgatcaattctggaggtttgaaacagatgggttcgcaaaataatatggtgaaaagggaaacagcagtttgctcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="44278" stop="42101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43978" g_stop="43721" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="261" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43720" i_stop="43625" i_length="96">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43624" g_stop="43460" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="426" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43459" i_stop="42652" i_length="808">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42651" g_stop="42401" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="677" r_length="251" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E417770" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43978" e_stop="43721"/>
          <exon e_start="43624" e_stop="43460"/>
          <exon e_start="42651" e_stop="42401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCCACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGATCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCATGTAAGTCAGGTTCTCCCTCATCTTTTGCGAAAGCCAACCGTCGAAACTCAGCAAGTAGAGAATTGACACTTTCATCAATGAATGGGGAGCCATTGGGTGGTCCACATAATGACACTAAGGACAGCAAGACAGCATCTAGGTGCCCCAACACAAACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAGGTAAATTTCTCTTGCTCCACAATTGTAGGACTGAATTAGGTCTTCTGGTTCTCTTTTTGATCTTCAGCTCTCACAATTGTTAAACAGTTGACATAATAAGGAATACACAATATTTTGAACTGCATTGTGTTAAACTTGAAGCTGAACCCGAATCTTTACAGAATTTAGTTAAAGGTAGAGGAAACTTGGGATGGAAGGGCTGTGGGCACTTAAATTGACTTATTTTCTGCTTGCTGTACAGAATGTCATATAGTATGCTAAACCAATTCTTAAAATATAAAGCTATGCTAAACCAATTCTTAAAATAGTTTAGACCAAGATTATTTTATTCTGTTGTAAAACTTTTGAAGGGGAACTGCACTTTTGTTGTAGTACACCTGTGGATATATAGACTCAAGTTACCAGTTTCAAAAAAAAGATAAAGCTTTTGAAGGCGGAACAAAAAACTCTCAAGACTCAAGTTAGTGATATTTGAGACTTAAAGCTGCTAGGTATATAATCTAGTCAAATTAAACTTTTTGATGTTGAACTAATTGCAATCGGATTGAATGACCAAAATAGCTTTGTCTCTAAGATGCTAATAGGTATCTTACCATTGATCAGCTAGGTCAAAATAGAGTGCCTCTAATTTCAAGGATAGGAGAAAGATCAAGGTTAAGTTCAACATTTTTCTATTTCTGTATCTTACAAGGAAGAAATCTATTTGTGGGTTCACTAATAATGGTGATGCAATCTACTCATTCAACTTAGACACTACTGTGGAAAGCTACTACTATGACTAATCAATTGTTTGGACCTATTGTCTCAGGTGGTTTTGTTGCTCATATTGCCTTTCGTGATAGCAAGGTTAAATTGAGAGCAGAGAGGTTTCTTAGCAGTATCACGAATTCATTTGAAACTATTTTAAGGAGCAATGTAGAGGTTAGACTTGTTCTGCTACCAGATGCGGAGACATCTGATGACAGTGGAAAGCCAATTACATTGATCAATTCTGGAGGTTTGAAACAGATGGGTTCGCAAAATAATATGGTGAAGAGGGAAATAGCAGTTAGCTCAAAT</genome_strand>
        <mrna_strand>TGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCGACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGACCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCAT................................................................................................GTGGTCCACATAATGACACTAAGGACAGCAAGACTTCATCTAGGTGCCCCAACACAAACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTTGTTGCTCATATTGCCTTTCGTGATAGCAAGGTTAAATTGAGAGCAGAGAGGTTTCTTAGCAGTATCACGAATTCATTTGAAACTATTTTACGGAGCAATGTAGAGGTTAGACTTGTTCTCCTACCGGATGGGGAGACATCTGATGACAGTGGAAAGCCAATTACATTGATCAATTCTGGAGGTTTGAAACAGATGGGTTCGCAAAATAATATGGTGAAAAGGGAAACAGCAGTTTGCTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446810" ref_strand="+" ref_description="SGN-E446810 [cSTA-23-E23]">
      <seq>gtttgaacgagacagaactggatagattgaagcatgcactaaagcttctttctgaggcagagaaacaactaagggtttcaagtgaacgttcgacttggtttacagcaaccctgctgcagttgggttctgcgacttcactagatcgaactcattcaggaagcagtcacaggctgagttctaagacaacagaggaagacccttctagtacatctagagaagctatatccctgaggcagagaactgatattcaccatgcaccatgtggtccacataatgacactaaggacagcaagacttcatctaggtgccccaacacaaacgtgttggatgatatctggatcagatgcattgataaatgccactccaacactttgaagcaattgcttcatacttgtggaacacttctgtcgatctctgaagttgaaggtggttttgttgctcatattgcctttcgtgatagcaaggttaaattgagagcagagaggtttcttagcagtatcacgaattcatttgaaactattttacggagcaatgtagaggttagacttgttctcctaccggatggggagacatctgatgacagtggaaagccaattacattgatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="44278" stop="42170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43978" g_stop="43721" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="261" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43720" i_stop="43625" i_length="96">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43624" g_stop="43460" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="426" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43459" i_stop="42652" i_length="808">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42651" g_stop="42470" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="608" r_length="182" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E446810" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43978" e_stop="43721"/>
          <exon e_start="43624" e_stop="43460"/>
          <exon e_start="42651" e_stop="42470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCCACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGATCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCATGTAAGTCAGGTTCTCCCTCATCTTTTGCGAAAGCCAACCGTCGAAACTCAGCAAGTAGAGAATTGACACTTTCATCAATGAATGGGGAGCCATTGGGTGGTCCACATAATGACACTAAGGACAGCAAGACAGCATCTAGGTGCCCCAACACAAACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAGGTAAATTTCTCTTGCTCCACAATTGTAGGACTGAATTAGGTCTTCTGGTTCTCTTTTTGATCTTCAGCTCTCACAATTGTTAAACAGTTGACATAATAAGGAATACACAATATTTTGAACTGCATTGTGTTAAACTTGAAGCTGAACCCGAATCTTTACAGAATTTAGTTAAAGGTAGAGGAAACTTGGGATGGAAGGGCTGTGGGCACTTAAATTGACTTATTTTCTGCTTGCTGTACAGAATGTCATATAGTATGCTAAACCAATTCTTAAAATATAAAGCTATGCTAAACCAATTCTTAAAATAGTTTAGACCAAGATTATTTTATTCTGTTGTAAAACTTTTGAAGGGGAACTGCACTTTTGTTGTAGTACACCTGTGGATATATAGACTCAAGTTACCAGTTTCAAAAAAAAGATAAAGCTTTTGAAGGCGGAACAAAAAACTCTCAAGACTCAAGTTAGTGATATTTGAGACTTAAAGCTGCTAGGTATATAATCTAGTCAAATTAAACTTTTTGATGTTGAACTAATTGCAATCGGATTGAATGACCAAAATAGCTTTGTCTCTAAGATGCTAATAGGTATCTTACCATTGATCAGCTAGGTCAAAATAGAGTGCCTCTAATTTCAAGGATAGGAGAAAGATCAAGGTTAAGTTCAACATTTTTCTATTTCTGTATCTTACAAGGAAGAAATCTATTTGTGGGTTCACTAATAATGGTGATGCAATCTACTCATTCAACTTAGACACTACTGTGGAAAGCTACTACTATGACTAATCAATTGTTTGGACCTATTGTCTCAGGTGGTTTTGTTGCTCATATTGCCTTTCGTGATAGCAAGGTTAAATTGAGAGCAGAGAGGTTTCTTAGCAGTATCACGAATTCATTTGAAACTATTTTAAGGAGCAATGTAGAGGTTAGACTTGTTCTGCTACCAGATGCGGAGACATCTGATGACAGTGGAAAGCCAATTACATTGATCAAT</genome_strand>
        <mrna_strand>TGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCGACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGACCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCAT................................................................................................GTGGTCCACATAATGACACTAAGGACAGCAAGACTTCATCTAGGTGCCCCAACACAAACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTTGTTGCTCATATTGCCTTTCGTGATAGCAAGGTTAAATTGAGAGCAGAGAGGTTTCTTAGCAGTATCACGAATTCATTTGAAACTATTTTACGGAGCAATGTAGAGGTTAGACTTGTTCTCCTACCGGATGGGGAGACATCTGATGACAGTGGAAAGCCAATTACATTGATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433269" ref_strand="+" ref_description="SGN-E433269 [STM-58-A18]">
      <seq>acagtgaaaagagcccgggaattgttggattcaggtgttgatccaatagttttgatgtctcaattggctactctcatcatggatataattgctggaactcatccaatagttgatgcaaagcaaactgatatctctggcggtaaaagtttgaacgagacagaactggatagattgaagcatgcactaaagcttctttctgaggcagagaaacaactaagggtttcaagtgaacgttcgacttggtttacagcaaccctgctgcagttgggttctgcgacttcactagatcgaactcattcaggaagcagtcacaggctgagttctaagacaacagaggaagacccttctagtacatctagagaagctatatccctgaggcagagaactgatattcaccatgcaccatgtaagtcaggttctccttcatcttttgcaaaagccaaccgtcgaaactcagcaagtagagaattgacactttcatcaatgaatggggaggcattaggtggtccacataatgacactaaggacagcaagacttcatctaggtgccccaacacaaacgtgttggatgatatctggatcagatgcattgataaatgccactccaacactttgaagcaattgcttcatacttgtggaacacttctgtcgatctctgaagttgaaagtggttttgttgctcatattgcctttcgtgatagcaaggttaaattgagagcagagaggtttcttagcagtatcacgaattcatttgaaactatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="44979" stop="42254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44679" g_stop="44532" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44531" i_stop="43979" i_length="553">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43978" g_stop="43460" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="667" r_length="519" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43459" i_stop="42652" i_length="808">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42651" g_stop="42554" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="765" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E433269" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44679" e_stop="44532"/>
          <exon e_start="43978" e_stop="43460"/>
          <exon e_start="42651" e_stop="42554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTGAAAAGAGCCCGGGAATTGTTGGATTCAGGTGTTGATCCAATAGTTTTGATGTCTCAATTGGCTACTCTCATCATGGATATAATTGCTGGAACTCATCCAATACTTGATGCAAAGCAAACTGATATCTCTGGCGGTAAAAGTTGTAAGTAGCATATGTTCACCTTTAAATTCTGTCTTTTCTGTTTGATCTCTTATTCACAAGCTTCGACTTATATTTTGCAAAAGACACTAGATTTATGCTTCTGATTGCAATTTCAGTACCTCAAAACCTATCAAATTTTGCCTGACCTTAGCCAACCATGTGAAATCACTTGATTTACTTCAATTTACGATGTAGTCTTATAAGAAAAATGCGGTTGCTCAAATTAGCCTGTGAAATTGGTTGAGAGGAAAAGGTTACATCATGGACTGTCTAATTTAGAACCTGTCAATTGCGTAGAATACGGTTATTTTACACACTTGTTCAAGTTTCTTAAGATGTTCCCTAACTTTTTGAGACATTGAAAATACAAATGTGAACTGCAAATATGGCATGCTTAATAGTTAATAGGATGGTAATGTATTATCTCAAAAAATTATAGGAAGGTAATGTAACTTCATGTGAAAAAAAGGATGTTTTTTCCTAGGTTATCAGATTTCAATTGTGACTTCTTTTTCAAATACTCACTAAAATTGCTGGGATTCTCACCTGTCAGTGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCCACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGATCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCATGTAAGTCAGGTTCTCCCTCATCTTTTGCGAAAGCCAACCGTCGAAACTCAGCAAGTAGAGAATTGACACTTTCATCAATGAATGGGGAGCCATTGGGTGGTCCACATAATGACACTAAGGACAGCAAGACAGCATCTAGGTGCCCCAACACAAACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAGGTAAATTTCTCTTGCTCCACAATTGTAGGACTGAATTAGGTCTTCTGGTTCTCTTTTTGATCTTCAGCTCTCACAATTGTTAAACAGTTGACATAATAAGGAATACACAATATTTTGAACTGCATTGTGTTAAACTTGAAGCTGAACCCGAATCTTTACAGAATTTAGTTAAAGGTAGAGGAAACTTGGGATGGAAGGGCTGTGGGCACTTAAATTGACTTATTTTCTGCTTGCTGTACAGAATGTCATATAGTATGCTAAACCAATTCTTAAAATATAAAGCTATGCTAAACCAATTCTTAAAATAGTTTAGACCAAGATTATTTTATTCTGTTGTAAAACTTTTGAAGGGGAACTGCACTTTTGTTGTAGTACACCTGTGGATATATAGACTCAAGTTACCAGTTTCAAAAAAAAGATAAAGCTTTTGAAGGCGGAACAAAAAACTCTCAAGACTCAAGTTAGTGATATTTGAGACTTAAAGCTGCTAGGTATATAATCTAGTCAAATTAAACTTTTTGATGTTGAACTAATTGCAATCGGATTGAATGACCAAAATAGCTTTGTCTCTAAGATGCTAATAGGTATCTTACCATTGATCAGCTAGGTCAAAATAGAGTGCCTCTAATTTCAAGGATAGGAGAAAGATCAAGGTTAAGTTCAACATTTTTCTATTTCTGTATCTTACAAGGAAGAAATCTATTTGTGGGTTCACTAATAATGGTGATGCAATCTACTCATTCAACTTAGACACTACTGTGGAAAGCTACTACTATGACTAATCAATTGTTTGGACCTATTGTCTCAGGTGGTTTTGTTGCTCATATTGCCTTTCGTGATAGCAAGGTTAAATTGAGAGCAGAGAGGTTTCTTAGCAGTATCACGAATTCATTTGAAACTATTTTA</genome_strand>
        <mrna_strand>ACAGTGAAAAGAGCCCGGGAATTGTTGGATTCAGGTGTTGATCCAATAGTTTTGATGTCTCAATTGGCTACTCTCATCATGGATATAATTGCTGGAACTCATCCAATAGTTGATGCAAAGCAAACTGATATCTCTGGCGGTAAAAGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCGACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGACCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCATGTAAGTCAGGTTCTCCTTCATCTTTTGCAAAAGCCAACCGTCGAAACTCAGCAAGTAGAGAATTGACACTTTCATCAATGAATGGGGAGGCATTAGGTGGTCCACATAATGACACTAAGGACAGCAAGACTTCATCTAGGTGCCCCAACACAAACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTTGTTGCTCATATTGCCTTTCGTGATAGCAAGGTTAAATTGAGAGCAGAGAGGTTTCTTAGCAGTATCACGAATTCATTTGAAACTATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736131" ref_strand="+" ref_description="SGN-E736131 [LC04BH10]">
      <seq>gtggtttcagatgagaagttactggaacttttagagctagccatgtcatcagacactgcagaaacagtgaaaagagcccgggaattgttggattcaggtgttgatccaatagttttgatgtctcaattggctactctcatcatggatataattgctggaactcatccaatacttgatgcaaagcaaactgatatctctggcggtaaaagtttgaacgagacagaactggatagattgaagcatgcactaaagcttctttctgaggcagagaaacaactaagggtttcaagtgaacgttcgacttggtttacagcaaccctgctgcagttgggttctgccacttcactagatcgaactcattcaggaagcagtcacaggctgagttctaagacaacagaggaagatccttctagtacatctagagaagctatatccctgaggcagagaactgatattcaccatgcaccatgtaagtcaggttctccctcatcttttgcgaaagccaaccgtcgaaactcagcaagtagagaattgacactttcatcaatgaatggggagccattgggtggtccacataatgacactaaggacagcaagacagcatctaggtgccccaacacaaacgtgttggatgatatctggatcagatgcattgataaatgccactccaacactttgaagcaattgcttcatacttgtggaacacttctgtcgatctctgaagttgaaggtggttttgttgctcatattgcctttcgtgatagcaagggttaattgagagcagagaggtttcttagcagtatcacgaattcatttgaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="45042" stop="42259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44742" g_stop="44532" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44531" i_stop="43979" i_length="553">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43978" g_stop="43460" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="730" r_length="519" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43459" i_stop="42652" i_length="808">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42651" g_stop="42559" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="823" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E736131" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44742" e_stop="44532"/>
          <exon e_start="43978" e_stop="43460"/>
          <exon e_start="42651" e_stop="42559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTTCAGATGAGAAGTTACTGGAACTTTTAGAGCTAGCCATGTCATCAGACACTGCAGAAACAGTGAAAAGAGCCCGGGAATTGTTGGATTCAGGTGTTGATCCAATAGTTTTGATGTCTCAATTGGCTACTCTCATCATGGATATAATTGCTGGAACTCATCCAATACTTGATGCAAAGCAAACTGATATCTCTGGCGGTAAAAGTTGTAAGTAGCATATGTTCACCTTTAAATTCTGTCTTTTCTGTTTGATCTCTTATTCACAAGCTTCGACTTATATTTTGCAAAAGACACTAGATTTATGCTTCTGATTGCAATTTCAGTACCTCAAAACCTATCAAATTTTGCCTGACCTTAGCCAACCATGTGAAATCACTTGATTTACTTCAATTTACGATGTAGTCTTATAAGAAAAATGCGGTTGCTCAAATTAGCCTGTGAAATTGGTTGAGAGGAAAAGGTTACATCATGGACTGTCTAATTTAGAACCTGTCAATTGCGTAGAATACGGTTATTTTACACACTTGTTCAAGTTTCTTAAGATGTTCCCTAACTTTTTGAGACATTGAAAATACAAATGTGAACTGCAAATATGGCATGCTTAATAGTTAATAGGATGGTAATGTATTATCTCAAAAAATTATAGGAAGGTAATGTAACTTCATGTGAAAAAAAGGATGTTTTTTCCTAGGTTATCAGATTTCAATTGTGACTTCTTTTTCAAATACTCACTAAAATTGCTGGGATTCTCACCTGTCAGTGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCCACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGATCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCATGTAAGTCAGGTTCTCCCTCATCTTTTGCGAAAGCCAACCGTCGAAACTCAGCAAGTAGAGAATTGACACTTTCATCAATGAATGGGGAGCCATTGGGTGGTCCACATAATGACACTAAGGACAGCAAGACAGCATCTAGGTGCCCCAACACAAACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAGGTAAATTTCTCTTGCTCCACAATTGTAGGACTGAATTAGGTCTTCTGGTTCTCTTTTTGATCTTCAGCTCTCACAATTGTTAAACAGTTGACATAATAAGGAATACACAATATTTTGAACTGCATTGTGTTAAACTTGAAGCTGAACCCGAATCTTTACAGAATTTAGTTAAAGGTAGAGGAAACTTGGGATGGAAGGGCTGTGGGCACTTAAATTGACTTATTTTCTGCTTGCTGTACAGAATGTCATATAGTATGCTAAACCAATTCTTAAAATATAAAGCTATGCTAAACCAATTCTTAAAATAGTTTAGACCAAGATTATTTTATTCTGTTGTAAAACTTTTGAAGGGGAACTGCACTTTTGTTGTAGTACACCTGTGGATATATAGACTCAAGTTACCAGTTTCAAAAAAAAGATAAAGCTTTTGAAGGCGGAACAAAAAACTCTCAAGACTCAAGTTAGTGATATTTGAGACTTAAAGCTGCTAGGTATATAATCTAGTCAAATTAAACTTTTTGATGTTGAACTAATTGCAATCGGATTGAATGACCAAAATAGCTTTGTCTCTAAGATGCTAATAGGTATCTTACCATTGATCAGCTAGGTCAAAATAGAGTGCCTCTAATTTCAAGGATAGGAGAAAGATCAAGGTTAAGTTCAACATTTTTCTATTTCTGTATCTTACAAGGAAGAAATCTATTTGTGGGTTCACTAATAATGGTGATGCAATCTACTCATTCAACTTAGACACTACTGTGGAAAGCTACTACTATGACTAATCAATTGTTTGGACCTATTGTCTCAGGTGGTTTTGTTGCTCATATTGCCTTTCGTGATAGCAAGGTTAAATTGAGAGCAGAGAGGTTTCTTAGCAGTATCACGAATTCATTTGAAACTA</genome_strand>
        <mrna_strand>GTGGTTTCAGATGAGAAGTTACTGGAACTTTTAGAGCTAGCCATGTCATCAGACACTGCAGAAACAGTGAAAAGAGCCCGGGAATTGTTGGATTCAGGTGTTGATCCAATAGTTTTGATGTCTCAATTGGCTACTCTCATCATGGATATAATTGCTGGAACTCATCCAATACTTGATGCAAAGCAAACTGATATCTCTGGCGGTAAAAGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCCACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGATCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCATGTAAGTCAGGTTCTCCCTCATCTTTTGCGAAAGCCAACCGTCGAAACTCAGCAAGTAGAGAATTGACACTTTCATCAATGAATGGGGAGCCATTGGGTGGTCCACATAATGACACTAAGGACAGCAAGACAGCATCTAGGTGCCCCAACACAAACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTTGTTGCTCATATTGCCTTTCGTGATAGCAAGGGTTAATTGAGAGCAGAGAGGTTTCTTAGCAGTATCACGAATTCATTTGAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402951" ref_strand="+" ref_description="SGN-E402951 [PPC-9-M21]">
      <seq>acagtgaaaagagcccgggaattgttggattcaggtgttgatccaatagttttgatgtctcaattggctactctcatcatggatataattgctggaactcatccaatagttgatgcaaagcaaactgatatctctggcggtaaaagtttgaacgagacagaactggatagattgaagcatgcactaaagcttctttctgaggcagagaaacaactaagggtttcaagtgaacgttcgacttggtttacagcaaccctgctgcagttgggttctgcgacttcactagatcgaactcattcaggaagcagtcacaggctgagttctaagacaacagaggaagacccttctagtacatctagagaagctatatccctgaggcagagaactgatattcaccatgcaccatgtaagtcaggttctccttcatcttttgcaaaagccaaccgtcgaaactcagcaagtagagaattgacactttcatcaatgaatggggaggcattaggtggtccacataatgacactaaggacagcaagacttcatctaggtgccccaacacaaacgtgttggatgatatctggatcagatgcattgataaatgccactccaacactttgaagcaattgcttcatacttgtggaacacttctgtcgatctctgaagttgaaggtggttttgttgctcatattgcctttcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="44979" stop="42322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44679" g_stop="44532" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44531" i_stop="43979" i_length="553">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43978" g_stop="43460" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="667" r_length="519" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43459" i_stop="42652" i_length="808">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42651" g_stop="42622" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="697" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E402951" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44679" e_stop="44532"/>
          <exon e_start="43978" e_stop="43460"/>
          <exon e_start="42651" e_stop="42622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTGAAAAGAGCCCGGGAATTGTTGGATTCAGGTGTTGATCCAATAGTTTTGATGTCTCAATTGGCTACTCTCATCATGGATATAATTGCTGGAACTCATCCAATACTTGATGCAAAGCAAACTGATATCTCTGGCGGTAAAAGTTGTAAGTAGCATATGTTCACCTTTAAATTCTGTCTTTTCTGTTTGATCTCTTATTCACAAGCTTCGACTTATATTTTGCAAAAGACACTAGATTTATGCTTCTGATTGCAATTTCAGTACCTCAAAACCTATCAAATTTTGCCTGACCTTAGCCAACCATGTGAAATCACTTGATTTACTTCAATTTACGATGTAGTCTTATAAGAAAAATGCGGTTGCTCAAATTAGCCTGTGAAATTGGTTGAGAGGAAAAGGTTACATCATGGACTGTCTAATTTAGAACCTGTCAATTGCGTAGAATACGGTTATTTTACACACTTGTTCAAGTTTCTTAAGATGTTCCCTAACTTTTTGAGACATTGAAAATACAAATGTGAACTGCAAATATGGCATGCTTAATAGTTAATAGGATGGTAATGTATTATCTCAAAAAATTATAGGAAGGTAATGTAACTTCATGTGAAAAAAAGGATGTTTTTTCCTAGGTTATCAGATTTCAATTGTGACTTCTTTTTCAAATACTCACTAAAATTGCTGGGATTCTCACCTGTCAGTGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCCACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGATCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCATGTAAGTCAGGTTCTCCCTCATCTTTTGCGAAAGCCAACCGTCGAAACTCAGCAAGTAGAGAATTGACACTTTCATCAATGAATGGGGAGCCATTGGGTGGTCCACATAATGACACTAAGGACAGCAAGACAGCATCTAGGTGCCCCAACACAAACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAGGTAAATTTCTCTTGCTCCACAATTGTAGGACTGAATTAGGTCTTCTGGTTCTCTTTTTGATCTTCAGCTCTCACAATTGTTAAACAGTTGACATAATAAGGAATACACAATATTTTGAACTGCATTGTGTTAAACTTGAAGCTGAACCCGAATCTTTACAGAATTTAGTTAAAGGTAGAGGAAACTTGGGATGGAAGGGCTGTGGGCACTTAAATTGACTTATTTTCTGCTTGCTGTACAGAATGTCATATAGTATGCTAAACCAATTCTTAAAATATAAAGCTATGCTAAACCAATTCTTAAAATAGTTTAGACCAAGATTATTTTATTCTGTTGTAAAACTTTTGAAGGGGAACTGCACTTTTGTTGTAGTACACCTGTGGATATATAGACTCAAGTTACCAGTTTCAAAAAAAAGATAAAGCTTTTGAAGGCGGAACAAAAAACTCTCAAGACTCAAGTTAGTGATATTTGAGACTTAAAGCTGCTAGGTATATAATCTAGTCAAATTAAACTTTTTGATGTTGAACTAATTGCAATCGGATTGAATGACCAAAATAGCTTTGTCTCTAAGATGCTAATAGGTATCTTACCATTGATCAGCTAGGTCAAAATAGAGTGCCTCTAATTTCAAGGATAGGAGAAAGATCAAGGTTAAGTTCAACATTTTTCTATTTCTGTATCTTACAAGGAAGAAATCTATTTGTGGGTTCACTAATAATGGTGATGCAATCTACTCATTCAACTTAGACACTACTGTGGAAAGCTACTACTATGACTAATCAATTGTTTGGACCTATTGTCTCAGGTGGTTTTGTTGCTCATATTGCCTTTCGTG</genome_strand>
        <mrna_strand>ACAGTGAAAAGAGCCCGGGAATTGTTGGATTCAGGTGTTGATCCAATAGTTTTGATGTCTCAATTGGCTACTCTCATCATGGATATAATTGCTGGAACTCATCCAATAGTTGATGCAAAGCAAACTGATATCTCTGGCGGTAAAAGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCGACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGACCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCATGTAAGTCAGGTTCTCCTTCATCTTTTGCAAAAGCCAACCGTCGAAACTCAGCAAGTAGAGAATTGACACTTTCATCAATGAATGGGGAGGCATTAGGTGGTCCACATAATGACACTAAGGACAGCAAGACTTCATCTAGGTGCCCCAACACAAACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTTGTTGCTCATATTGCCTTTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344000" ref_strand="+" ref_description="SGN-E344000 [cTOF-12-K24]">
      <seq>gatttgattgctctaaatgcagatggatcacttcgagatgcagaaactatgttagaccagctcagtttgttggggaaacgaatcactacctctttggttaatgatctgattggtgtggtttcagatgagaagttactggaacttttagagctagccatgtcatcagacactgcagaaacagtgaaaagagcccgggaattgttggattcaggtgttgatccaatagttttgatgtctcaattggctactctcatcatggatataattgctggaactcatccaatacttgatgcaaagcaaactgatatctctggcggtaaaagtttgaacgagacagaactggatagattgaagcatgcactaaagcttctttctgaggcagagaaacaactaagggtttcaagtgaacgttcgacttggtttacagcaaccctgctgcagttgggttctgccacttcactagatcgaactcattcaggaagcagtcacaggctgagttctaagacaacagaggaagatccttctagtacatctagagaagctatatccctgaggcagagaactgatattcaccatgcaccatgtaagtcaggttctccctcatcttttgcgaaagccaaccgtcgaaactcagcaagtagagaattgacactttcatcaatgaatggggagccattgggtggtccacataatgacactaaggacagcaagacagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="45243" stop="43287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44943" g_stop="44836" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44835" i_stop="44749" i_length="87">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44748" g_stop="44532" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="325" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44531" i_stop="43979" i_length="553">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43978" g_stop="43587" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="717" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E344000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44943" e_stop="44836"/>
          <exon e_start="44748" e_stop="44532"/>
          <exon e_start="43978" e_stop="43587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGATTGCTCTAAATGCAGATGGATCACTTCGAGATGCAGAAACTATGTTAGACCAGCTCAGTTTGTTGGGGAAACGAATCACTACCTCTTTGGTTAATGATCTGGTGAGTTTGATGTGTTTGTTTACACCTTTTCCATGCTTTCCATTCATGGCATGAAACCTTTTTCCTGATATTTCTTTTGTTCCCTAGATTGGTGTGGTTTCAGATGAGAAGTTACTGGAACTTTTAGAGCTAGCCATGTCATCAGACACTGCAGAAACAGTGAAAAGAGCCCGGGAATTGTTGGATTCAGGTGTTGATCCAATAGTTTTGATGTCTCAATTGGCTACTCTCATCATGGATATAATTGCTGGAACTCATCCAATACTTGATGCAAAGCAAACTGATATCTCTGGCGGTAAAAGTTGTAAGTAGCATATGTTCACCTTTAAATTCTGTCTTTTCTGTTTGATCTCTTATTCACAAGCTTCGACTTATATTTTGCAAAAGACACTAGATTTATGCTTCTGATTGCAATTTCAGTACCTCAAAACCTATCAAATTTTGCCTGACCTTAGCCAACCATGTGAAATCACTTGATTTACTTCAATTTACGATGTAGTCTTATAAGAAAAATGCGGTTGCTCAAATTAGCCTGTGAAATTGGTTGAGAGGAAAAGGTTACATCATGGACTGTCTAATTTAGAACCTGTCAATTGCGTAGAATACGGTTATTTTACACACTTGTTCAAGTTTCTTAAGATGTTCCCTAACTTTTTGAGACATTGAAAATACAAATGTGAACTGCAAATATGGCATGCTTAATAGTTAATAGGATGGTAATGTATTATCTCAAAAAATTATAGGAAGGTAATGTAACTTCATGTGAAAAAAAGGATGTTTTTTCCTAGGTTATCAGATTTCAATTGTGACTTCTTTTTCAAATACTCACTAAAATTGCTGGGATTCTCACCTGTCAGTGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCCACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGATCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCATGTAAGTCAGGTTCTCCCTCATCTTTTGCGAAAGCCAACCGTCGAAACTCAGCAAGTAGAGAATTGACACTTTCATCAATGAATGGGGAGCCATTGGGTGGTCCACATAATGACACTAAGGACAGCAAGACAGCA</genome_strand>
        <mrna_strand>GATTTGATTGCTCTAAATGCAGATGGATCACTTCGAGATGCAGAAACTATGTTAGACCAGCTCAGTTTGTTGGGGAAACGAATCACTACCTCTTTGGTTAATGATCTG.......................................................................................ATTGGTGTGGTTTCAGATGAGAAGTTACTGGAACTTTTAGAGCTAGCCATGTCATCAGACACTGCAGAAACAGTGAAAAGAGCCCGGGAATTGTTGGATTCAGGTGTTGATCCAATAGTTTTGATGTCTCAATTGGCTACTCTCATCATGGATATAATTGCTGGAACTCATCCAATACTTGATGCAAAGCAAACTGATATCTCTGGCGGTAAAAGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCCACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGATCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCATGTAAGTCAGGTTCTCCCTCATCTTTTGCGAAAGCCAACCGTCGAAACTCAGCAAGTAGAGAATTGACACTTTCATCAATGAATGGGGAGCCATTGGGTGGTCCACATAATGACACTAAGGACAGCAAGACAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E607287" ref_strand="+" ref_description="SGN-E607287 [23250]">
      <seq>aagctctggagaagtccaagtgtattgacagagtggtttttgacttgaagccttgcaagaggccttgattactacacaggagtcatatttgaagctgtcttcaaaggagctgctcaggttggttcgattgctgctggtggacgttatgacaatctgatagggatgtttggcacacggcaggttccttctgttgggatcagtctgggaatagagagagtatttgcaatcatggaacagcttcagaaagacaaaaatcaggaaatccgagccactgaaactcaagttctcgttagcattcttggtgatgacagtgctttagctgctgaactggttggtgaattgtggcatgctaaagtgaaagcagaatttatgatccataaaaaagtgatgaagcacattgatcgggccagagattcgaggatcccttggatggtcacttgttggtgaacgcgaacttagtgaagcgagttgtaaaattgaaggatgttgttgcagctattgactatgaggtccccagaggtaagcttgtggacgatctatgcaaacgattaggcatgtaaatatcttaagctctttgtattggctagcattgaatcatttttaacaagattccatttctgggggtttaaaatccaccatgttggtgggggggttagacattgacccttgtccatttaatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="54035" stop="51707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53735" g_stop="53620" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53619" i_stop="53004" i_length="616">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53003" g_stop="52863" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="258" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52862" i_stop="52426" i_length="437">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52425" g_stop="52007" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="682" r_length="424" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E607287" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53735" e_stop="53620"/>
          <exon e_start="53003" e_stop="52863"/>
          <exon e_start="52425" e_stop="52007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTCTGGAGAAGTCCAAGTGTATTGACAGAGTGGTTTTTGACTTG-AGCCTTGCAAGAGGCCTTGATTACTACACAGGAGTCATATTTGAAGCAGTCTTCAAAGGAGCTGCTCAGGTAGATCTCTGGGTTAGCTAATAAGTTCTAGTTCCAGTTACCTATGCTTTGCGACTTTGGCTTGTCAATGTGGTGGTTTTCAATTCATAGTTTGTGCATTTATGCATCATAGATGTACATATTAATGGTTTGAGTTCTCAACATTATTTTTTTAGGCGTCTAAGAAGTATATATAAACTGTACAAGTTATCAACATTATCTGGAGCCTAAAATATCTCAAGTACTTTCAATAATATTTGCTTTGACTTCCGTATTACTGAAAGTCAATCTAATATTGGAGTAACCAGTGTACATTATTCTAGTTTCTTCTGTCTCGCATACTATGTTCAGAGTTAAACACTGTAAATTGGCTCTTCCCAAGGCGAACAGCAGGTTCTCAAGCCTCCAAGTGTGGCCTTGTTTAAATGTCTTCTGCATCACTATTACTTGATAAAAGACCTCCATCTGTAGTATCGAATTTGATAGTGAAGTTCTAGTAGTTTGATTATGGCATAGACCTATATATAAGTCTCGGTTCCTACTGCTCTGTTTCTCCTATTATATGTGTGTTTGCATGAAATGTTTGTAAATTGTAGTTTTCTGTGATCGCTTACCACTTGTCTGGAAATGCCTGCAGGTTGGTTCGATTGCTGCTGGTGGACGTTATGACAACCTGATAGGGATGTTTGGGACACGGCAGGTTCCTTCTGTTGGGATCAGTCTGGGAATAGAGAGAGTATTTGCAATCATGGAACAGCTTCAGAAAGACAAAAATCAGGTGAGAATAGCTAAATAAGCATATCTGATTTGTTTTGAAATAGACTTTGGTAGTTTTCATCTTTTTCAACTTGTTGCACGTCAGTCCTCTTGAGCCTTTTTAAAGATTATAGATGAAACAGTTCACATAATTCAATATGGTCACAAAGCGGTAAAACTGATACTACGACAAATCTACTAAAGACTAGATGAATGTCCCTAGCATTCGTGGTGCACATTGTTCTGTTTTACTTTTTTTTTTTTAAACTTATCCGCTCCATGGCAAATGATGTCTTCATTTCTGAAGATGTCCTAAATTTGTTGCATAATGCTAGCTCCATTTCATTACTACCTATTATTTTCTAAGCTCCTCCCTCTTTTCTCTCTCTCTCCATGTTTTTCTCTGGAAGTGTTAACTTATGCACAATGTGTCATTGTTCTCCTTGAACAACTTTCCAGGAAATTCGAGCCACTGAAACTCAAGTTCTCGTTAGCATTCTTGGTGATGACAGTGCTTTGGCTGCTGAGCTAGCTGGTGAATTGTGGAATGCTAAAGTGAAAGCAGAATTCATGATCCATAAAAAAGTGATGAAGCACATTGATCGGGCCAGAGATTCGAGGATCCCTTGGATGGT-ACTTGTTGGTGAACGCGAACTTAGTGAAG-GAGTTGTAAAATTGAAGGATGTTGTTGCAGCTATTGACTATGAGATTCCCAGAGGTAAGCTCGTGGACGATCTATGCAAACGATTAGGCATGT-AATATCTTAAGCTCTTTGTATTGG-TAG-ATTGAATAATTTTTTAGCAAGATTCCATTTTTGGGGGGTTTAAAATCCACCATGTTGGT-GGAGGGTTAGACATTGACCCTTGTCCA-TTAATCCA</genome_strand>
        <mrna_strand>AAGCTCTGGAGAAGTCCAAGTGTATTGACAGAGTGGTTTTTGACTTGAAGCCTTGCAAGAGGCCTTGATTACTACACAGGAGTCATATTTGAAGCTGTCTTCAAAGGAGCTGCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTCGATTGCTGCTGGTGGACGTTATGACAATCTGATAGGGATGTTTGGCACACGGCAGGTTCCTTCTGTTGGGATCAGTCTGGGAATAGAGAGAGTATTTGCAATCATGGAACAGCTTCAGAAAGACAAAAATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCCGAGCCACTGAAACTCAAGTTCTCGTTAGCATTCTTGGTGATGACAGTGCTTTAGCTGCTGAACTGGTTGGTGAATTGTGGCATGCTAAAGTGAAAGCAGAATTTATGATCCATAAAAAAGTGATGAAGCACATTGATCGGGCCAGAGATTCGAGGATCCCTTGGATGGTCACTTGTTGGTGAACGCGAACTTAGTGAAGCGAGTTGTAAAATTGAAGGATGTTGTTGCAGCTATTGACTATGAGGTCCCCAGAGGTAAGCTTGTGGACGATCTATGCAAACGATTAGGCATGTAAATATCTTAAGCTCTTTGTATTGGCTAGCATTGAATCA-TTTTTAACAAGATTCCATTTCT-GGGGGTTTAAAATCCACCATGTTGGTGGGGGGGTTAGACATTGACCCTTGTCCATTTAATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486397" ref_strand="+" ref_description="SGN-E486397 [cSTE-22-E11]">
      <seq>gagagagagaggtaaagcttaatcacaggaagctgcttgatggtatgttggctatatgcggggtgccacaagagaagttcagaaccatttgttcaagcattgacaagctagataaacaatcctttgagcagataaaaaaagaaatggtggatgagaaaggcttaagtaatgagatatcagacagaattggtacatttgtcaaatggaggggacctcctgtggaattattatctaagctcaagaaggaacgcagttttttggagaacaatgaatcttcacttgctttggatgaattagagattatgtttaaagctctggagaagtccaagtgtattgacagagtggtttttgacttgagccttgcaagaggccttgattactacacaggagtcatatttgaagctgtcttcaaaggagctgctcaggttggttcgattgctgctggtggacgttatgacaatctgaaactcaagttctcgttagcattcttggtgatgacagtgctttagctgctgaactggttggtgaattgtggcatgctaaagtgaaagcagaatttatgatccataaaaaagtgatgaagcacattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="54537" stop="51982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54235" g_stop="54101" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="146" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54100" i_stop="53899" i_length="202">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53898" g_stop="53620" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="425" r_length="279" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53619" i_stop="53004" i_length="616">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53003" g_stop="52967" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="462" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52966" i_stop="52412" i_length="555">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52411" g_stop="52282" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="592" r_length="130" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E486397" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54235" e_stop="54101"/>
          <exon e_start="53898" e_stop="53620"/>
          <exon e_start="53003" e_stop="52967"/>
          <exon e_start="52411" e_stop="52282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGCTTAATCACAGAAAGCTGCTTGATGGTATGTTGGCTATATGTGGGGTGCCACAAGAGAAGTTCAGAACCATTTGTTCAAGCATTGACAAGCTAGATAAACAATCCTTTGAGCAGATAAAAAAAGAAATGGTGAGGCATAGTCTCCCAGTAGGATAAAGTTGTATGTTTTGTTAAGATGGCTATTTGATATCTGTTATTGGTGTTTTGACTAGTACTGGCGTTCTAATGAAAATACTCGAGAAACTTGTGTTAAAAATCTGTCAACTATCATCTTTATGAAACAGAATGGGTATGTTATTAGCAGTCTAATGCTGCTGTCATTTAATAATAGGTGGATGAGAAAGGCTTAAGTAATGAGATATCAGACAGAATTGGTACATTTGTCAAATGGAGGGGACCTCCAGTGGAATTATTATCTAAGCTCAAGCAAGAACGCAGTTTTCTGGAGAACAATGAATCTTCACTTGCTTTGGATGAATTAGAGATTATGTTTAAAGCTCTGGAGAAGTCCAAGTGTATTGACAGAGTGGTTTTTGACTTGAGCCTTGCAAGAGGCCTTGATTACTACACAGGAGTCATATTTGAAGCAGTCTTCAAAGGAGCTGCTCAGGTAGATCTCTGGGTTAGCTAATAAGTTCTAGTTCCAGTTACCTATGCTTTGCGACTTTGGCTTGTCAATGTGGTGGTTTTCAATTCATAGTTTGTGCATTTATGCATCATAGATGTACATATTAATGGTTTGAGTTCTCAACATTATTTTTTTAGGCGTCTAAGAAGTATATATAAACTGTACAAGTTATCAACATTATCTGGAGCCTAAAATATCTCAAGTACTTTCAATAATATTTGCTTTGACTTCCGTATTACTGAAAGTCAATCTAATATTGGAGTAACCAGTGTACATTATTCTAGTTTCTTCTGTCTCGCATACTATGTTCAGAGTTAAACACTGTAAATTGGCTCTTCCCAAGGCGAACAGCAGGTTCTCAAGCCTCCAAGTGTGGCCTTGTTTAAATGTCTTCTGCATCACTATTACTTGATAAAAGACCTCCATCTGTAGTATCGAATTTGATAGTGAAGTTCTAGTAGTTTGATTATGGCATAGACCTATATATAAGTCTCGGTTCCTACTGCTCTGTTTCTCCTATTATATGTGTGTTTGCATGAAATGTTTGTAAATTGTAGTTTTCTGTGATCGCTTACCACTTGTCTGGAAATGCCTGCAGGTTGGTTCGATTGCTGCTGGTGGACGTTATGACAACCTGATAGGGATGTTTGGGACACGGCAGGTTCCTTCTGTTGGGATCAGTCTGGGAATAGAGAGAGTATTTGCAATCATGGAACAGCTTCAGAAAGACAAAAATCAGGTGAGAATAGCTAAATAAGCATATCTGATTTGTTTTGAAATAGACTTTGGTAGTTTTCATCTTTTTCAACTTGTTGCACGTCAGTCCTCTTGAGCCTTTTTAAAGATTATAGATGAAACAGTTCACATAATTCAATATGGTCACAAAGCGGTAAAACTGATACTACGACAAATCTACTAAAGACTAGATGAATGTCCCTAGCATTCGTGGTGCACATTGTTCTGTTTTACTTTTTTTTTTTTAAACTTATCCGCTCCATGGCAAATGATGTCTTCATTTCTGAAGATGTCCTAAATTTGTTGCATAATGCTAGCTCCATTTCATTACTACCTATTATTTTCTAAGCTCCTCCCTCTTTTCTCTCTCTCTCCATGTTTTTCTCTGGAAGTGTTAACTTATGCACAATGTGTCATTGTTCTCCTTGAACAACTTTCCAGGAAATTCGAGCCACTGAAACTCAAGTTCTCGTTAGCATTCTTGGTGATGACAGTGCTTTGGCTGCTGAGCTAGCTGGTGAATTGTGGAATGCTAAAGTGAAAGCAGAATTCATGATCCATAAAAAAGTGATGAAGCACATTGAT</genome_strand>
        <mrna_strand>GTAAAGCTTAATCACAGGAAGCTGCTTGATGGTATGTTGGCTATATGCGGGGTGCCACAAGAGAAGTTCAGAACCATTTGTTCAAGCATTGACAAGCTAGATAAACAATCCTTTGAGCAGATAAAAAAAGAAATG..........................................................................................................................................................................................................GTGGATGAGAAAGGCTTAAGTAATGAGATATCAGACAGAATTGGTACATTTGTCAAATGGAGGGGACCTCCTGTGGAATTATTATCTAAGCTCAAGAAGGAACGCAGTTTTTTGGAGAACAATGAATCTTCACTTGCTTTGGATGAATTAGAGATTATGTTTAAAGCTCTGGAGAAGTCCAAGTGTATTGACAGAGTGGTTTTTGACTTGAGCCTTGCAAGAGGCCTTGATTACTACACAGGAGTCATATTTGAAGCTGTCTTCAAAGGAGCTGCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTCGATTGCTGCTGGTGGACGTTATGACAATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACTCAAGTTCTCGTTAGCATTCTTGGTGATGACAGTGCTTTAGCTGCTGAACTGGTTGGTGAATTGTGGCATGCTAAAGTGAAAGCAGAATTTATGATCCATAAAAAAGTGATGAAGCACATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698871" ref_strand="+" ref_description="SGN-E698871 [FA07DD09]">
      <seq>attggtacatttgtcaaatggaggggacctccagtggaattattatctaagctcaagcaagaacgtagttttctggagaacaatgaatcttcacttgctttggatgaattagagattatgtttaaagctctggagaagtccaagtgtattgacagagtggtttttgacttgagccttgcaagaggccttgattactacacaggagtcatatttgaagcagtcttcaaaggagctgctcaggttggttcgattgctgctggtggacgttatgacaacctgatagggatgtttgggacacggcaggttccttctgttgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="54159" stop="52624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53859" g_stop="53620" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53619" i_stop="53004" i_length="616">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53003" g_stop="52924" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="320" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E698871" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53859" e_stop="53620"/>
          <exon e_start="53003" e_stop="52924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTACATTTGTCAAATGGAGGGGACCTCCAGTGGAATTATTATCTAAGCTCAAGCAAGAACGCAGTTTTCTGGAGAACAATGAATCTTCACTTGCTTTGGATGAATTAGAGATTATGTTTAAAGCTCTGGAGAAGTCCAAGTGTATTGACAGAGTGGTTTTTGACTTGAGCCTTGCAAGAGGCCTTGATTACTACACAGGAGTCATATTTGAAGCAGTCTTCAAAGGAGCTGCTCAGGTAGATCTCTGGGTTAGCTAATAAGTTCTAGTTCCAGTTACCTATGCTTTGCGACTTTGGCTTGTCAATGTGGTGGTTTTCAATTCATAGTTTGTGCATTTATGCATCATAGATGTACATATTAATGGTTTGAGTTCTCAACATTATTTTTTTAGGCGTCTAAGAAGTATATATAAACTGTACAAGTTATCAACATTATCTGGAGCCTAAAATATCTCAAGTACTTTCAATAATATTTGCTTTGACTTCCGTATTACTGAAAGTCAATCTAATATTGGAGTAACCAGTGTACATTATTCTAGTTTCTTCTGTCTCGCATACTATGTTCAGAGTTAAACACTGTAAATTGGCTCTTCCCAAGGCGAACAGCAGGTTCTCAAGCCTCCAAGTGTGGCCTTGTTTAAATGTCTTCTGCATCACTATTACTTGATAAAAGACCTCCATCTGTAGTATCGAATTTGATAGTGAAGTTCTAGTAGTTTGATTATGGCATAGACCTATATATAAGTCTCGGTTCCTACTGCTCTGTTTCTCCTATTATATGTGTGTTTGCATGAAATGTTTGTAAATTGTAGTTTTCTGTGATCGCTTACCACTTGTCTGGAAATGCCTGCAGGTTGGTTCGATTGCTGCTGGTGGACGTTATGACAACCTGATAGGGATGTTTGGGACACGGCAGGTTCCTTCTGTTGGGAT</genome_strand>
        <mrna_strand>ATTGGTACATTTGTCAAATGGAGGGGACCTCCAGTGGAATTATTATCTAAGCTCAAGCAAGAACGTAGTTTTCTGGAGAACAATGAATCTTCACTTGCTTTGGATGAATTAGAGATTATGTTTAAAGCTCTGGAGAAGTCCAAGTGTATTGACAGAGTGGTTTTTGACTTGAGCCTTGCAAGAGGCCTTGATTACTACACAGGAGTCATATTTGAAGCAGTCTTCAAAGGAGCTGCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTCGATTGCTGCTGGTGGACGTTATGACAACCTGATAGGGATGTTTGGGACACGGCAGGTTCCTTCTGTTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480536" ref_strand="+" ref_description="SGN-E480536 [cSTD-14-C16]">
      <seq>gttatcagatagctaaggtgtacagaagagataatccatctaagggtagatatcgtgaattttaccagtgtgattttgatatagctggtcagtttgagaagatgatgcctgattttgaggtcataaagattttgaccgatttgttagatgagcttgatattggagagtatgaggtaaagcttaatcacaggaagctgcttgatggtatgttggctatatgcggggtgccacaagagaagttcagaaccatttgttcaagcattgacaagctagataaacaatcctttgagcagataaaaaaagaaatggtggatgagaaaggcttaagtaatgagatatcagacagaattggtacatttgtcaaatggaggggacctcctgtggaattattatctaagctcaagaaggaacgcagttttttggagaacaatgaatcttcacttgctttggatgaattagagattatgtttaaagctctggagaagtccaagtgtattgacagagtggtttttgacttgagccttgcaagaggccttgattactacacaggagtcatatttgaagctgtcttcaaaggagctgctcatgttggttcgattgctgctggtggacgttatgaccatctgatagggatgtttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="55121" stop="52647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54821" g_stop="54649" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54648" i_stop="54236" i_length="413">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54235" g_stop="54101" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="308" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54100" i_stop="53899" i_length="202">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53898" g_stop="53620" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="587" r_length="279" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53619" i_stop="53004" i_length="616">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53003" g_stop="52947" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="644" r_length="57" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E480536" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54821" e_stop="54649"/>
          <exon e_start="54235" e_stop="54101"/>
          <exon e_start="53898" e_stop="53620"/>
          <exon e_start="53003" e_stop="52947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCAGATAGCTAAGGTGTACAGAAGAGATAATCCATCTAAGGGTAGATATCGTGAATTTTACCAGTGTGATTTTGACATAGCTGGTCAATTTGAGAAGATGATGCCTGATTTTGAGGTCATAAAGATTTTGACCGAGTTGTTAGATGAGCTTGATATTGGAGAGTATGAGGTAAACTTTCTAATGGTTCTCTACCCTTGTCCAAATTCAGTCTATGCTTGTTAGTTGTCCTCGGAATGATATTCAAAGGAACACTATTTATATTTGTCCCCAATCACTAGAAAATTGCCTTATGATTTTTGCCCGCTCTCATGTCCGCTCGTCCTCCCTGTGCTTCTTCTCAAATCATTAACTTACATCACCACAGTGTTTTGGTTATTTCATTGGGACCATCTAAATCTTCGACTTGTTTGGTTGTGATGCATATCTATCAAGAATTATACCATTCCATCTGTATATAGATTCTCTTTGTTTTTCTTATGATGCAGCACATCCTAGTTCTTTTCTCACGCAATCTCAAAAATCATCTGTCCTGTTAGTGGTATATGGCATTACTAATTATGTAAATCTTCTCTTCTATTCAGGTAAAGCTTAATCACAGAAAGCTGCTTGATGGTATGTTGGCTATATGTGGGGTGCCACAAGAGAAGTTCAGAACCATTTGTTCAAGCATTGACAAGCTAGATAAACAATCCTTTGAGCAGATAAAAAAAGAAATGGTGAGGCATAGTCTCCCAGTAGGATAAAGTTGTATGTTTTGTTAAGATGGCTATTTGATATCTGTTATTGGTGTTTTGACTAGTACTGGCGTTCTAATGAAAATACTCGAGAAACTTGTGTTAAAAATCTGTCAACTATCATCTTTATGAAACAGAATGGGTATGTTATTAGCAGTCTAATGCTGCTGTCATTTAATAATAGGTGGATGAGAAAGGCTTAAGTAATGAGATATCAGACAGAATTGGTACATTTGTCAAATGGAGGGGACCTCCAGTGGAATTATTATCTAAGCTCAAGCAAGAACGCAGTTTTCTGGAGAACAATGAATCTTCACTTGCTTTGGATGAATTAGAGATTATGTTTAAAGCTCTGGAGAAGTCCAAGTGTATTGACAGAGTGGTTTTTGACTTGAGCCTTGCAAGAGGCCTTGATTACTACACAGGAGTCATATTTGAAGCAGTCTTCAAAGGAGCTGCTCAGGTAGATCTCTGGGTTAGCTAATAAGTTCTAGTTCCAGTTACCTATGCTTTGCGACTTTGGCTTGTCAATGTGGTGGTTTTCAATTCATAGTTTGTGCATTTATGCATCATAGATGTACATATTAATGGTTTGAGTTCTCAACATTATTTTTTTAGGCGTCTAAGAAGTATATATAAACTGTACAAGTTATCAACATTATCTGGAGCCTAAAATATCTCAAGTACTTTCAATAATATTTGCTTTGACTTCCGTATTACTGAAAGTCAATCTAATATTGGAGTAACCAGTGTACATTATTCTAGTTTCTTCTGTCTCGCATACTATGTTCAGAGTTAAACACTGTAAATTGGCTCTTCCCAAGGCGAACAGCAGGTTCTCAAGCCTCCAAGTGTGGCCTTGTTTAAATGTCTTCTGCATCACTATTACTTGATAAAAGACCTCCATCTGTAGTATCGAATTTGATAGTGAAGTTCTAGTAGTTTGATTATGGCATAGACCTATATATAAGTCTCGGTTCCTACTGCTCTGTTTCTCCTATTATATGTGTGTTTGCATGAAATGTTTGTAAATTGTAGTTTTCTGTGATCGCTTACCACTTGTCTGGAAATGCCTGCAGGTTGGTTCGATTGCTGCTGGTGGACGTTATGACAACCTGATAGGGATGTTTGGGACA</genome_strand>
        <mrna_strand>GTTATCAGATAGCTAAGGTGTACAGAAGAGATAATCCATCTAAGGGTAGATATCGTGAATTTTACCAGTGTGATTTTGATATAGCTGGTCAGTTTGAGAAGATGATGCCTGATTTTGAGGTCATAAAGATTTTGACCGATTTGTTAGATGAGCTTGATATTGGAGAGTATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCTTAATCACAGGAAGCTGCTTGATGGTATGTTGGCTATATGCGGGGTGCCACAAGAGAAGTTCAGAACCATTTGTTCAAGCATTGACAAGCTAGATAAACAATCCTTTGAGCAGATAAAAAAAGAAATG..........................................................................................................................................................................................................GTGGATGAGAAAGGCTTAAGTAATGAGATATCAGACAGAATTGGTACATTTGTCAAATGGAGGGGACCTCCTGTGGAATTATTATCTAAGCTCAAGAAGGAACGCAGTTTTTTGGAGAACAATGAATCTTCACTTGCTTTGGATGAATTAGAGATTATGTTTAAAGCTCTGGAGAAGTCCAAGTGTATTGACAGAGTGGTTTTTGACTTGAGCCTTGCAAGAGGCCTTGATTACTACACAGGAGTCATATTTGAAGCTGTCTTCAAAGGAGCTGCTCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTCGATTGCTGCTGGTGGACGTTATGACCATCTGATAGGGATGTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539358" ref_strand="+" ref_description="SGN-E539358 [TUS-59-B7](-)">
      <seq>atggaatgcaagagaaagactggttatcacttgttgctgtccatagtgattcatggctgctttctgttgcattctactttggcgcacggtttgggtttgccaagagtgaaaggaagaggcttttccaaatgacaaatgatctcccaacagtgtttgaggttgttactggagctgctaagcaggcacgcgatgccgctcacaacaatagcagcaaaagcaaatcaagtggaaagcctcgacagccagagccccagcccaaggaagtaaaggtgtctccacctacaatggaggatgaaagtggggaggaggaggaagaagaagaagaagaacaaggggcaactctctgtggagcctgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgtgagagatggttccatggcaaatgtgtgaagattaccccagcaaaagctgagcatatcaagcagtacaagtgtcccagctgcagtagcaagagagctagagtttaaaatttgtgggacttttagatcaacatcaattaagtggagatgttggaaggtctaggacttttagctcagttatcaaatgtaagctatgtcaaagttaaatgtttgctgatggaattgggatgtccatttcatgaacatttgctttctgttatcttgctttcggattgtgnttttagatgaaatttgtgcctgttatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="65897" stop="61889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65597" g_stop="65486" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65485" i_stop="62875" i_length="2611">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62874" g_stop="62754" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="233" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62753" i_stop="62662" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.663" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62661" g_stop="62189" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="707" r_length="474" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62188" i_stop="62035" i_length="154">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.089" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62034" g_stop="62026" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="716" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E539358" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65597" e_stop="65486"/>
          <exon e_start="62874" e_stop="62754"/>
          <exon e_start="62661" e_stop="62189"/>
          <exon e_start="62034" e_stop="62026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAGGTAGAATAAAATTTGTTGCCAGTAGATTTCACCTCTATCATTTTAACTGTCTTGCAAACTTGGTCATATCCATTGTAATTTCATTTGAATGTGCATGTTTTTCCTGTTTGATGGAAGACATTCGAGGCCTGCGGCTACCTTTTGTCAAACGTAAATTAGTGTTGTGCCATGTGATTCCCTGCTATTAAAATTCTGTGTGGATTACCCGCCCTCCCTTCTAAACTCTGTCTTTGCATTGTCTATTAGGTAGTTTTTGCTTGATTACTTCTTATCTTTTCAGGGGTGGATCTAGTGGCATAAGTTGAGCTACTTCTTTGCCATAGTTGTTCTCCTCATGCTGCTTAAAACTCGTATTTTTTCCTGTAGGAGCTTACTTTTCAGTTTTTGTTGAACTCCATGTTTTTTGTTTTCTTTTGATTTTGCTGCATATACTTGATGCTTATTAATGACTCATCTTACTTGATCAAAAAATAAAATAAAATTCACCTTCGCAATCATTTAGTGCATCTAGAACTTGTGTGCTCCATTGTTCTATTTTAGGGAGATTGGCTTCTGTGGTTGCTGTCCCTCTTTTTTTGTTTCATAGGTGAGATCATTTTCATGAGAAGTCACAGAAGAAATTTAGTCAACAATCATGCTATGAAAATGTGTCTTTTTCGGAATTGTTCCTTTCTAACCCATACATCGACACCTTTTTTTGTCTTCTTTCTTAGCACGTAGTGTTTGACCTGTTTGCTGCTCCTCATTGAGGTATCTTGACCCAACAATCAATCTTTCATGAATTTAGGCCTTATCCAGAACAAATTGGGTTTGATTCACTGTTTTAGCTTCTGTGTCTCCAAGATTCTGTATTTAGAACTCATCATAGTTTGACAATCTTATGCTTGCCATTAATCTACTCCAAATCTTCTCCTTTATCGGCATATGAAAGCTCACATAGACAATGTTGTGCTTGATTGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAAAGCACCAAGAAGTTGCAAATATATTGAGTTTATGACGATAAAACTCTAAACTACAACTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAGAGCACGAAGAACTTGCAAATATATTGAGTTTATGACGATAAAGCTCTAAACTATAATTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGAGAATTGCAGCAGTTAGATTATTTAGGCAATATATAGGAGTCCACCTTCAACCAAAGTTCATCTAGTGTGGCATCTTCAACCTAAGTTCATTTACTCAGTGTTTCATATTCTTTGCGTCATGAAAGATGTCTTATTTCTGTGTCTTGGTGAGCATACTGATAAGATGTTGCAATGTTAATCTTGGTGTGATGAGATCCCAGACATCTTTCATTTTTAGTTTCTACTATAGAATCTGTTTGCTATTACCTTATAAATAAGGATTCTAGATTTGCACCGCCTTTTGTCCTTTCGCTATTCTAGGAAGGTTATTTGGTGCTAGTTGTTAGACAAAAGCAAATCCATTCACTAAGTGGAATTTGTTGTGGCATCATTGAATAAGATAATGTTTGGTTCAGCAAAGGTAGGGATGCCTGACATGTCCAGATGCTTACCATCAGCTGGCGTTTCTGAATGTACTCTCTTTGAATAAAATAGGTGCTCAGCTGAGTGAATAACAGGAGGTCTGACATCTTGAGAGATTTACTGTCATCTGTTATTATTGGCTGTAGGCTGTGCCATCATTGAATATTAGGTACATTCGGGACGGCTCAAATGCTGTATAATGATGGAGAGAAACTTCTAGTAGCAGGTTTTGGTCCCTCTTTTCTACCCTGGAGTCCTCCAACCGAGAAAAATTAGGGGGGTCATTTTGGTTTTGGGTCTGCGACGAATAGGTTCAAGAGATGAGAGAATTAAGGATACCCACCAGAAAGACTAATCCAATCCATAAGGAGGTACCAGAAAATACAACATTTTTGTTACTTGACCAGCCATCAGGAGAAGCAAATACAACGGGTACGCTAATCAATAAGATTAATGAAGTAGCAATTAATGCAAAAACAGCCAATTGGAAAGCAAGAGTCATGCTTTTAATCCTCCAAGCTACCAACAAATGAACTATATACCATTAGACCGTTAGAGAATATTGATGGATGTGAAAATATGACTGAAATCGTCATAAGCTGGAGTTTATACTGGGAAACTGGTTGCATGGGATTCCATAATCATACATACATGTCCAGAAATGTCAACTTAAATTTGACTTATATCTGTCAAGTGTCTGGATGGTTTGTCTAGCTAGAGTCCAATCTCGTTAATGTGCTTTCCTATGTTACTCGGATTCTTCATAAACAGCAATGGGGTGTGTGGGATCCTCCAAGATCAGTGCATTTTTTGGAGGATCTGACACAAGTATGGCATCACTATTGGAGAGTCCGAGCAGCATAGGTGGCTTACGTTGGTTAAATGGTTATCTGATATTAATTTAGTGAGGATAATTGTTTTATTTTGGGAATCATGTATACAGGAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAGGTTCTCATATACTGGACCTAACATATATAGTTACTGTTTCTTTTCCCATTTTGTTTGAGCACATGTTTTCAGCTATTATCTTTGATGTTCAGCCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAGGATGAAAGTGGGGAGGAGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTCATGAACATTTGCTTTCTGTTATCTTGCTTTCGGATTGTG-TTTTAGATGAAATTTGTGCCTGTTATCATCTTGTGCTTCTGTATCCATTTTCATCTTTCTTTACTTAAATGAGTTATCTATATCTACTACACTGCGGTAGTATGTGGAATTCAGAAACTATTTGTGATCCTTACTCTTGAATACAGTAAATCACACCCCTTAACTTTTCACATTCATAATAGAAAATCAAA</genome_strand>
        <mrna_strand>ATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTCCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGCCAAGAGTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAG............................................................................................CCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAGGATGAAAGTGGGGAGGAGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTCATGAACATTTGCTTTCTGTTATCTTGCTTTCGGATTGTGNTTTTAGATGAAATTTGTGCCTGTTATCA..........................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220390" ref_strand="+" ref_description="SGN-E220390 [cLEL-12-N23](-)">
      <seq>ggcacgagggcaactctctgtggagcctgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgtgagagatggttccatggcaaatgtgtgaagattaccccagcaaaagctgagcatatcaagcagtacaagtgtcccagctgcagtagcaagagagctagagtttaaaatttgtgggacttttagatcaacatcaattaagtggagatgttggaaggtctaggacttttagctcagttatcaaatgtaagctatgtcaaagttaaatgtttgctgatggaattgggatgtccatttcatgaacatttgctttctgttatcttgcttacggatcgtgttttagatgaaatttgtgcctgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="62868" stop="61892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62569" g_stop="62193" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="392"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E220390" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62569" e_stop="62193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTCATGAACATTTGCTTTCTGTTATCTTGCTTTCGGATTGTGTTTTAGATGAAATTTGTGCCTGTT</genome_strand>
        <mrna_strand>GGCACGAGGG-CAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTCATGAACATTTGCTTTCTGTTATCTTGCTTACGGATCGTGTTTTAGATGAAATTTGTGCCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220213" ref_strand="+" ref_description="SGN-E220213 [cLEL-12-N23](-)">
      <seq>gtggagcctgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgtgagagatggttccatggcaaatgtgtgaagattaccccagcaaaagctgagcatatcaagcagtacaagtgtcccagctgcagtagcaagagagctagagtttaaaatttgtgggacttttagatcaacatcaattaagtggagatgttggaaggtctaggacttttagctcagttatcaaatgtaagctatgtcaaagttaaatgtttgctgatggaattgggatgtccgtttccatgaacatttgctttctgttatcttgctttcggattgtgttttagatgaaatttgtgcctgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="62849" stop="61892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62549" g_stop="62193" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="359" polyA_stop="374"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E220213" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62549" e_stop="62193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTC-ATGAACATTTGCTTTCTGTTATCTTGCTTTCGGATTGTGTTTTAGATGAAATTTGTGCCTGTT</genome_strand>
        <mrna_strand>GTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCGTTTCCATGAACATTTGCTTTCTGTTATCTTGCTTTCGGATTGTGTTTTAGATGAAATTTGTGCCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223236" ref_strand="+" ref_description="SGN-E223236 [cLEL-14-E20](-)">
      <seq>gcctgtggtgataattatgcgactgatgaattctggattcgctgtgaatttgttaaaagatggttccatggcaaatgtgtgaaggttaccccagcaaaagctgagcatatcaagcagtacaagtgtcccagctgcagtagcaagagagctagagtttaaaatttgtggggcttttagatcatcatcaattaagtggagatgttggaaggtctaggacttttagctcagttatcaaatgtaagctatgtcaaagttaaatgtttgctgatggaattgggatgtccatttcatgaacatttgctttctgttatcttgctttcggagtgtgttttagatgaaatttgtccctgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="62844" stop="61892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62544" g_stop="62193" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="368"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E223236" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62544" e_stop="62193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTCATGAACATTTGCTTTCTGTTATCTTGCTTTCGGATTGTGTTTTAGATGAAATTTGTGCCTGTT</genome_strand>
        <mrna_strand>GCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTCGCTGTGAATTTGTTAAAAGATGGTTCCATGGCAAATGTGTGAAGGTTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGGCTTTTAGATCATCATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTCATGAACATTTGCTTTCTGTTATCTTGCTTTCGGAGTGTGTTTTAGATGAAATTTGTCCCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432967" ref_strand="+" ref_description="SGN-E432967 [STM-57-F24]">
      <seq>caacttttttttaaacacaatccgaaagtttgctaacagaaagcaaatgttcatgaaatgaacatcccaattccatcagcaaacatttaacttttgacatagattacatttgataactgagctaaaagtcctagaccttccaacacctccacttaattgatgttgctctaaaattgccacaaattttaaactctagctctcttgctactgcaactaggacacttgtactgcttgatatgctcagcttttgctggggtaatcttcacacatttgccatggaaccatctctcacaaatatcacagcaaatccagaattcatcagtggcataattatcaccacaagctccacagagagttgccccttgttcttcttcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="61903" stop="62878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62201" g_stop="62579" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E432967" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62201" e_stop="62579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTCATCTAAAACACAATCCGAAAGCAAGATAACAGAAAGCAAATGTTCATGAAATGGACATCCCAATTCCATCAGCAAACATTTAACTTT-GACATAGCTTACATTTGATAACTGAGCTAAAAGTCCTAGACCTTCCAACATCTCCACTTAATTGATGTTGATCTAAAAGTCCCACAAATTTTAAACTCTAGCTCTCTTGCTACTGCAGCTGGGACACTTGTACTGCTTGATATGCTCAGCTTTTGCTGGGGTAATCTTCACACATTTGCCATGGAACCATCTCTCACAAATATCACAGCAAATCCAGAATTCATCAGTCGCATAATTATCACCACAGGCTCCACAGAGAGTTGCCCCTTGTTCTTCTTCTTCTT</genome_strand>
        <mrna_strand>CAACTTT-TTTTTAAACACAATCCGAAAGTTTGCTAACAGAAAGCAAATGTTCATGAAATGAACATCCCAATTCCATCAGCAAACATTTAACTTTTGACATAGATTACATTTGATAACTGAGCTAAAAGTCCTAGACCTTCCAACACCTCCACTTAATTGATGTTGCTCTAAAATTGCCACAAATTTTAAACTCTAGCTCTCTTGCTACTGCAACTAGGACACTTGTACTGCTTGATATGCTCAGCTTTTGCTGGGGTAATCTTCACACATTTGCCATGGAACCATCTCTCACAAATATCACAGCAAATCCAGAATTCATCAGTGGCATAATTATCACCACAAGCTCCACAGAGAGTTGCCCCTTGTTCTTCTTCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402589" ref_strand="+" ref_description="SGN-E402589 [PPC-8-K17]">
      <seq>gagaagaagaagaacaaggggcaactctctgtggagcttgtggtgataattatgccactgatgaattctggatttgctgtgatatttgtgagagatggttccatggcaaatgtgtgaagattaccccagcaaaagctgagcatatcaagcagtacaagtgtcctagttgcagtagcaagagagctagagtttaaaatttgtggcaattttagagcaacatcaattaagtggaggtgttggaaggtctaggacttttagctcagttatcaaatgtaatctatgtcaaaagttaaatgtttgctgatggaattgggatgttcatttcatgaacatttgctttctgttatcttactttcggattgtgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="62878" stop="61905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62579" g_stop="62202" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E402589" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62579" e_stop="62202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTC-AAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTCATGAACATTTGCTTTCTGTTATCTTGCTTTCGGATTGTGTTTTAGATGAAATTT</genome_strand>
        <mrna_strand>GAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCTTGTGGTGATAATTATGCCACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGCAATTTTAGAGCAACATCAATTAAGTGGAGGTGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAATCTATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTTCATTTCATGAACATTTGCTTTCTGTTATCTTACTTTCGGATTGTGTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432966" ref_strand="+" ref_description="SGN-E432966 [STM-57-F24]">
      <seq>gagaagaagaagaacaaggggcaactctctgtggagcttgtggtgataattatgccactgatgaattctggatttgctgtgatatttgtgagagatggttccatggcaaatgtgtgaagattaccccagcaaaagctgagcatatcaagcagtacaagtgtcctagttgcagtagcaagagagctagagtttaaaatttgtggcaattttagagcaacatcaattaagtggaggtgttggaaggtctaggacttttagctcagttatcaaatgtaatctatgtcaaaagttaaatgtttgctgatggaattgggatgttcatttcatgaacatttgctttctgttatcttactttcggattgtgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="62878" stop="61905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62579" g_stop="62202" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E432966" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62579" e_stop="62202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTC-AAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTCATGAACATTTGCTTTCTGTTATCTTGCTTTCGGATTGTGTTTTAGATGAAATTT</genome_strand>
        <mrna_strand>GAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCTTGTGGTGATAATTATGCCACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGCAATTTTAGAGCAACATCAATTAAGTGGAGGTGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAATCTATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTTCATTTCATGAACATTTGCTTTCTGTTATCTTACTTTCGGATTGTGTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235175" ref_strand="+" ref_description="SGN-E235175 [cLEL-6-C13](-)">
      <seq>gaaagtggggaggaggaggaagaagaagaagaagaccaaggggcaactctctgtggagcctgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgtgagagatggttccatggcaaatgtgtgaagattaccccagcaaaagctgagcatatcaagcagtacaagtgtcccagctgcagtagcaagagagctagagtttaaaatttgtgggacttttagatcaacatcaattaagtggagatgttggaaggtctaggacttttagctcagttatcaaatgtaagctatgtcaaagttaaatgtttgctgatggaattgggatgtccatttcatgaacccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="62901" stop="61950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62601" g_stop="62250" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="374"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E235175" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62601" e_stop="62250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTGGGGAGGAGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTCATGAAC</genome_strand>
        <mrna_strand>GAAAGTGGGGAGGAGGAGGAAGAAGAAGAAGAAGACCAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTCATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413482" ref_strand="-" ref_description="SGN-E413482 [STM-17-P20]">
      <seq>aggcacgcgatgccgctcacaacaatagcagcaaaagcaaatcaagtggaaagcctcgacagccagagccccagcccaaggaagtaaaggtgtctccacctaaaatggaggatgaaagtggggaggaggaggaggaagaagaagaagaagaacaaggggcaactctctgtggagcttgtggtgataattatgccacggatgaattctggatttgctgtgatatttgtgagagatggttccatggcaaaatgtgtgaagattaccccagcaaaagctgagcatatcaagcagtacaagtgtcctagttgcagtagcaagagagctagagtttaaaatttgtggcaattttagagcaacatcaattaagtggaggtgttggaaggtctaggacttttagctcagtggtcaaaagtaatctatgtcaaagttaaatgtttgctgatggaattgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="63106" stop="61965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62806" g_stop="62754" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62753" i_stop="62662" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.663" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62661" g_stop="62265" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="454" r_length="401" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E413482" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413482" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62806" e_stop="62754"/>
          <exon e_start="62661" e_stop="62265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAGGTTCTCATATACTGGACCTAACATATATAGTTACTGTTTCTTTTCCCATTTTGTTTGAGCACATGTTTTCAGCTATTATCTTTGATGTTCAGCCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAGGATGAAAGT--GG-GGAGGAGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGC-AAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGAT</genome_strand>
        <mrna_strand>AGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAG............................................................................................CCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTAAAATGGAGGATGAAAGTGGGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCTTGTGGTGATAATTATGCCACGGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGCAATTTTAGAGCAACATCAATTAAGTGGAGGTGTTGGAAGGTCTAGGACTTTTAGCTCAGTGGTCAAAAGTAATCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539361" ref_strand="+" ref_description="SGN-E539361 [TUS-59-B7]">
      <seq>gaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctccctgttgaggaggtgcctccagaacttccggagccagcattaggcataaactttgcacgtgatggaatgcaagagaaagactggttatcacttgttgctgttcatagtgattcatggctgctttctgttgcattctactttggcgcacggtttgggtttggcaagagtgaaaggaagaggcttttccaaatgacaaatgatctcccaacagtgtttgaggttgttactggagctgctaagcaggcacgcgatgccgctcacaacaatagcagcaaaagcaaatcaagtggaaagcctcgacagccagagccccagcccaaggaagtaaaggtgtctccacctacaatggaggatgaaagtggggaggaaggaggaagaagaagaagaagaacaaggggcaactctctgtggagcctgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgtgagagatggttccatggcaaatgtgtgaagattaccccagcaaaagctgagcatatcaagcagtacaagtgtcccagctgcagtagcaagagagctagagtttaaaatttgtgggacttttagatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="66007" stop="62062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65707" g_stop="65486" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65485" i_stop="62875" i_length="2611">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62874" g_stop="62754" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="343" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62753" i_stop="62662" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.663" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62661" g_stop="62362" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="644" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E539361" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65707" e_stop="65486"/>
          <exon e_start="62874" e_stop="62754"/>
          <exon e_start="62661" e_stop="62362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAGGTAGAATAAAATTTGTTGCCAGTAGATTTCACCTCTATCATTTTAACTGTCTTGCAAACTTGGTCATATCCATTGTAATTTCATTTGAATGTGCATGTTTTTCCTGTTTGATGGAAGACATTCGAGGCCTGCGGCTACCTTTTGTCAAACGTAAATTAGTGTTGTGCCATGTGATTCCCTGCTATTAAAATTCTGTGTGGATTACCCGCCCTCCCTTCTAAACTCTGTCTTTGCATTGTCTATTAGGTAGTTTTTGCTTGATTACTTCTTATCTTTTCAGGGGTGGATCTAGTGGCATAAGTTGAGCTACTTCTTTGCCATAGTTGTTCTCCTCATGCTGCTTAAAACTCGTATTTTTTCCTGTAGGAGCTTACTTTTCAGTTTTTGTTGAACTCCATGTTTTTTGTTTTCTTTTGATTTTGCTGCATATACTTGATGCTTATTAATGACTCATCTTACTTGATCAAAAAATAAAATAAAATTCACCTTCGCAATCATTTAGTGCATCTAGAACTTGTGTGCTCCATTGTTCTATTTTAGGGAGATTGGCTTCTGTGGTTGCTGTCCCTCTTTTTTTGTTTCATAGGTGAGATCATTTTCATGAGAAGTCACAGAAGAAATTTAGTCAACAATCATGCTATGAAAATGTGTCTTTTTCGGAATTGTTCCTTTCTAACCCATACATCGACACCTTTTTTTGTCTTCTTTCTTAGCACGTAGTGTTTGACCTGTTTGCTGCTCCTCATTGAGGTATCTTGACCCAACAATCAATCTTTCATGAATTTAGGCCTTATCCAGAACAAATTGGGTTTGATTCACTGTTTTAGCTTCTGTGTCTCCAAGATTCTGTATTTAGAACTCATCATAGTTTGACAATCTTATGCTTGCCATTAATCTACTCCAAATCTTCTCCTTTATCGGCATATGAAAGCTCACATAGACAATGTTGTGCTTGATTGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAAAGCACCAAGAAGTTGCAAATATATTGAGTTTATGACGATAAAACTCTAAACTACAACTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAGAGCACGAAGAACTTGCAAATATATTGAGTTTATGACGATAAAGCTCTAAACTATAATTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGAGAATTGCAGCAGTTAGATTATTTAGGCAATATATAGGAGTCCACCTTCAACCAAAGTTCATCTAGTGTGGCATCTTCAACCTAAGTTCATTTACTCAGTGTTTCATATTCTTTGCGTCATGAAAGATGTCTTATTTCTGTGTCTTGGTGAGCATACTGATAAGATGTTGCAATGTTAATCTTGGTGTGATGAGATCCCAGACATCTTTCATTTTTAGTTTCTACTATAGAATCTGTTTGCTATTACCTTATAAATAAGGATTCTAGATTTGCACCGCCTTTTGTCCTTTCGCTATTCTAGGAAGGTTATTTGGTGCTAGTTGTTAGACAAAAGCAAATCCATTCACTAAGTGGAATTTGTTGTGGCATCATTGAATAAGATAATGTTTGGTTCAGCAAAGGTAGGGATGCCTGACATGTCCAGATGCTTACCATCAGCTGGCGTTTCTGAATGTACTCTCTTTGAATAAAATAGGTGCTCAGCTGAGTGAATAACAGGAGGTCTGACATCTTGAGAGATTTACTGTCATCTGTTATTATTGGCTGTAGGCTGTGCCATCATTGAATATTAGGTACATTCGGGACGGCTCAAATGCTGTATAATGATGGAGAGAAACTTCTAGTAGCAGGTTTTGGTCCCTCTTTTCTACCCTGGAGTCCTCCAACCGAGAAAAATTAGGGGGGTCATTTTGGTTTTGGGTCTGCGACGAATAGGTTCAAGAGATGAGAGAATTAAGGATACCCACCAGAAAGACTAATCCAATCCATAAGGAGGTACCAGAAAATACAACATTTTTGTTACTTGACCAGCCATCAGGAGAAGCAAATACAACGGGTACGCTAATCAATAAGATTAATGAAGTAGCAATTAATGCAAAAACAGCCAATTGGAAAGCAAGAGTCATGCTTTTAATCCTCCAAGCTACCAACAAATGAACTATATACCATTAGACCGTTAGAGAATATTGATGGATGTGAAAATATGACTGAAATCGTCATAAGCTGGAGTTTATACTGGGAAACTGGTTGCATGGGATTCCATAATCATACATACATGTCCAGAAATGTCAACTTAAATTTGACTTATATCTGTCAAGTGTCTGGATGGTTTGTCTAGCTAGAGTCCAATCTCGTTAATGTGCTTTCCTATGTTACTCGGATTCTTCATAAACAGCAATGGGGTGTGTGGGATCCTCCAAGATCAGTGCATTTTTTGGAGGATCTGACACAAGTATGGCATCACTATTGGAGAGTCCGAGCAGCATAGGTGGCTTACGTTGGTTAAATGGTTATCTGATATTAATTTAGTGAGGATAATTGTTTTATTTTGGGAATCATGTATACAGGAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAGGTTCTCATATACTGGACCTAACATATATAGTTACTGTTTCTTTTCCCATTTTGTTTGAGCACATGTTTTCAGCTATTATCTTTGATGTTCAGCCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAGGATGAAAGTGGGGAGG-AGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAAC</genome_strand>
        <mrna_strand>GAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAG............................................................................................CCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAGGATGAAAGTGGGGAGGAAGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281799" ref_strand="+" ref_description="SGN-E281799 [cLER-14-N11]">
      <seq>aacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctccctgttgaggaggtgcctccagaacttccggagccagcattaggcataaactttgcacgtgatggaatgcaagagaaagactggttatcacttgttgctgttcatagtgattcatggctgctttctgttgcattctactttggcgcacggtttgggtttggcaagagtgaaaggaagaggcttttccaaatgacaaatgatctcccaacagtgtttgaggttgttactggagctgctaagcaggcacgcgatgccgctcacaacaatagcagcaaaagcaaatcaagtggaaagcctcgacagccagagccccagcccaaggaagtaaaggtgtctccacctacaatggaggatgaaagtggggaggaggaggaagaagaagaagaagaacaaggggcaactctctgtggagcctgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgtgagagatggttccatggcaaatgtgtgaagattaccccagcaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="66006" stop="62144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65706" g_stop="65486" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65485" i_stop="62875" i_length="2611">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62874" g_stop="62754" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="342" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62753" i_stop="62662" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.663" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62661" g_stop="62444" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="560" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E281799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65706" e_stop="65486"/>
          <exon e_start="62874" e_stop="62754"/>
          <exon e_start="62661" e_stop="62444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAGGTAGAATAAAATTTGTTGCCAGTAGATTTCACCTCTATCATTTTAACTGTCTTGCAAACTTGGTCATATCCATTGTAATTTCATTTGAATGTGCATGTTTTTCCTGTTTGATGGAAGACATTCGAGGCCTGCGGCTACCTTTTGTCAAACGTAAATTAGTGTTGTGCCATGTGATTCCCTGCTATTAAAATTCTGTGTGGATTACCCGCCCTCCCTTCTAAACTCTGTCTTTGCATTGTCTATTAGGTAGTTTTTGCTTGATTACTTCTTATCTTTTCAGGGGTGGATCTAGTGGCATAAGTTGAGCTACTTCTTTGCCATAGTTGTTCTCCTCATGCTGCTTAAAACTCGTATTTTTTCCTGTAGGAGCTTACTTTTCAGTTTTTGTTGAACTCCATGTTTTTTGTTTTCTTTTGATTTTGCTGCATATACTTGATGCTTATTAATGACTCATCTTACTTGATCAAAAAATAAAATAAAATTCACCTTCGCAATCATTTAGTGCATCTAGAACTTGTGTGCTCCATTGTTCTATTTTAGGGAGATTGGCTTCTGTGGTTGCTGTCCCTCTTTTTTTGTTTCATAGGTGAGATCATTTTCATGAGAAGTCACAGAAGAAATTTAGTCAACAATCATGCTATGAAAATGTGTCTTTTTCGGAATTGTTCCTTTCTAACCCATACATCGACACCTTTTTTTGTCTTCTTTCTTAGCACGTAGTGTTTGACCTGTTTGCTGCTCCTCATTGAGGTATCTTGACCCAACAATCAATCTTTCATGAATTTAGGCCTTATCCAGAACAAATTGGGTTTGATTCACTGTTTTAGCTTCTGTGTCTCCAAGATTCTGTATTTAGAACTCATCATAGTTTGACAATCTTATGCTTGCCATTAATCTACTCCAAATCTTCTCCTTTATCGGCATATGAAAGCTCACATAGACAATGTTGTGCTTGATTGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAAAGCACCAAGAAGTTGCAAATATATTGAGTTTATGACGATAAAACTCTAAACTACAACTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAGAGCACGAAGAACTTGCAAATATATTGAGTTTATGACGATAAAGCTCTAAACTATAATTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGAGAATTGCAGCAGTTAGATTATTTAGGCAATATATAGGAGTCCACCTTCAACCAAAGTTCATCTAGTGTGGCATCTTCAACCTAAGTTCATTTACTCAGTGTTTCATATTCTTTGCGTCATGAAAGATGTCTTATTTCTGTGTCTTGGTGAGCATACTGATAAGATGTTGCAATGTTAATCTTGGTGTGATGAGATCCCAGACATCTTTCATTTTTAGTTTCTACTATAGAATCTGTTTGCTATTACCTTATAAATAAGGATTCTAGATTTGCACCGCCTTTTGTCCTTTCGCTATTCTAGGAAGGTTATTTGGTGCTAGTTGTTAGACAAAAGCAAATCCATTCACTAAGTGGAATTTGTTGTGGCATCATTGAATAAGATAATGTTTGGTTCAGCAAAGGTAGGGATGCCTGACATGTCCAGATGCTTACCATCAGCTGGCGTTTCTGAATGTACTCTCTTTGAATAAAATAGGTGCTCAGCTGAGTGAATAACAGGAGGTCTGACATCTTGAGAGATTTACTGTCATCTGTTATTATTGGCTGTAGGCTGTGCCATCATTGAATATTAGGTACATTCGGGACGGCTCAAATGCTGTATAATGATGGAGAGAAACTTCTAGTAGCAGGTTTTGGTCCCTCTTTTCTACCCTGGAGTCCTCCAACCGAGAAAAATTAGGGGGGTCATTTTGGTTTTGGGTCTGCGACGAATAGGTTCAAGAGATGAGAGAATTAAGGATACCCACCAGAAAGACTAATCCAATCCATAAGGAGGTACCAGAAAATACAACATTTTTGTTACTTGACCAGCCATCAGGAGAAGCAAATACAACGGGTACGCTAATCAATAAGATTAATGAAGTAGCAATTAATGCAAAAACAGCCAATTGGAAAGCAAGAGTCATGCTTTTAATCCTCCAAGCTACCAACAAATGAACTATATACCATTAGACCGTTAGAGAATATTGATGGATGTGAAAATATGACTGAAATCGTCATAAGCTGGAGTTTATACTGGGAAACTGGTTGCATGGGATTCCATAATCATACATACATGTCCAGAAATGTCAACTTAAATTTGACTTATATCTGTCAAGTGTCTGGATGGTTTGTCTAGCTAGAGTCCAATCTCGTTAATGTGCTTTCCTATGTTACTCGGATTCTTCATAAACAGCAATGGGGTGTGTGGGATCCTCCAAGATCAGTGCATTTTTTGGAGGATCTGACACAAGTATGGCATCACTATTGGAGAGTCCGAGCAGCATAGGTGGCTTACGTTGGTTAAATGGTTATCTGATATTAATTTAGTGAGGATAATTGTTTTATTTTGGGAATCATGTATACAGGAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAGGTTCTCATATACTGGACCTAACATATATAGTTACTGTTTCTTTTCCCATTTTGTTTGAGCACATGTTTTCAGCTATTATCTTTGATGTTCAGCCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAGGATGAAAGTGGGGAGGAGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGC</genome_strand>
        <mrna_strand>AACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAG............................................................................................CCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAGGATGAAAGTGGGGAGGAGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322059" ref_strand="+" ref_description="SGN-E322059 [cTOB-29-O23]">
      <seq>tttcttacaatttctctacttgcttctcacaatttctcatgaaaatttgagcttttctctttatgaatcttcatttttcacagcacatagcaagctatttttaaagttttgggcaacatgaagaggaaaccctagttctttggggaaaaaaccctaattttcttgttttttttcaaagactcgatttttttcttgtggggttgttaaaaattgagtgaagagaaggataatatggaaaatacggtacctaggactgtagaagaagtattcaacgatttcaaaggtcgtagagctggtttaattaaagcactaactacagatgtcgagaagttctatcagtcgtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctccctgttgaggaggtgcctccagaacttccggagccagcattaggcataaactttgcacgtgatggaatgcaagagaaagactggttatcacttgttgctgttcatagtgattcatggctgctttctgttgcattctactttggcgcacggtttgggtttggcaagagtgaaaggaagaggcttttccaaatgacaaatgatctcccaacagtgtttgaggttgttactggagctgctaagcaggcacgcgatgccgctcacaacaatagcagcaaaagcaaatcaagtggaaagcctcgacagccagagccccagcccaaggaagtaaaggtgtctccacctacaatggaagatgaaagtgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="68327" stop="62291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68027" g_stop="67709" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67708" i_stop="67570" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67569" g_stop="67537" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="352" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67536" i_stop="65715" i_length="1822">
            <donor d_prob="0.490" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65714" g_stop="65486" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="581" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65485" i_stop="62875" i_length="2611">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62874" g_stop="62754" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="702" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62753" i_stop="62662" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.663" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62661" g_stop="62591" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="773" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E322059" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68027" e_stop="67709"/>
          <exon e_start="67569" e_stop="67537"/>
          <exon e_start="65714" e_stop="65486"/>
          <exon e_start="62874" e_stop="62754"/>
          <exon e_start="62661" e_stop="62591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTACAATTTCTCTACTTGCTTCTCACAATTTCTCATGAAAATTTGAGCTTTTCTCTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAGAGGAAACCCTAGTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAGACTCGATTTTTTTCTTGTGGGGTTGTTAAAAATTGAGTGAAGAGAAGGATAATATGGAAAATACGGTACCTAGGACTGTAGAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAGGTTTGTAGTGTTGTTTCCTTTTTTTTTTTCTTAAAATTTTCTTGCACTTTTTATGGGGTTTTGAGCATAATTTCATTCTGGGTGTTCCTGAATTTTGTTGGTTTTTACTAATTATGATGTTCTTAAAAAAATTATGCAGATGTCGAGAAGTTCTATCAGTCGTGTGATCCTGGTGAGTTTTCTGCTGCTCAGTTTTGATGGACTGTTGCGGTCCGTCAATATTCACGTTTGGTTCTTCTGTGCTATGAGCTTGAGCTGTATTTCTAAATGCAGTATATGTCTTGGAGGCTATAGCTTTTAATTTCTGGGACCGTTCTTTGTATTCATATTTTTTCTTCAAATTGCTGCTCTTTTATGTTCTCATTGAGCGATTTGGTTGAGTGATTAATTAGGACTTTGTCACTCTTTAATATTTCAGAATTTTGTAATTTGCTTCTTGTCCCCTTTTTTTTGGGTCACTTTTGTAATTTCAGTGCTGTTTGTCCTAGGGAGTGGCCTAAAATTCATGTTAGAGCTTTCTGACTGTTTACATTAGGGCTGTGTATCGGCTAGTTCGGTTCAGTTTTGAAGTTTATTGGGTTGGCTTATTGGTTATCGGTTTGTAGAGATGCTAAACCGTTATAGAACCATTATGATATTGGCTTTATCGGTTATTGATTTATCGGTTTTTTATCGTTATCGGTTTAACCGTTAAGATTTGACACAAAAGAAAAAACATTGAAAATCATTTAAAAACAAGGTGACAAACCAAATAAACCATGCACTTGAGTTCACAAGTTACATCTTGCTCTAAAGCAAACACTTTTACATTGTAGAATAATCAAGTGTTTGAGACAACCAAAAAATAAAATTAGGAAATTAAACTCCAAGTCGAGAACTTTATATACAAAATGGTATAAATATAATTATTTAATTTACTATTGGGTTACTGGTTAACCCATTAAGAACAAAACTTTAAACCGTTAAGAACCAATAACCCGATTAACAAAAAAAATCAAAATCGTTATCAAAACCACTAAAACAATAACCTAATACTTTTTTATCGATTTGGTTTTGAACAGCCCTAGTTTACATCATTTTGTCATTTGATGTTCTGCTTTGGTGTTATGCAGGAACAGAAAGATCATATCTTTATTGAGTAGTTAATTGTCGCCTTCGATATGAAAGAGTAATTCTTCTGCATTTTCAACAGAATTATCATTATCTAAAACTGCTTTGCAAAACATGATCTTTAAAAATGAGATCATTACTTAGAATTTTATGTCGTTTAGTGAGAGTGTCAGTGTCAGAAGTGTTCTCATCATTGTCTTGATGACTTTTTATCAGTTCTCAAGGAAGAAGAGGTGTAAAGCTTCTTTTATGTAGCAATGAGTCATCATTTCTCTATCACAGTGACACAGTGTCTCCAACCATAATTTATCTTGCTATTTATGAAATTTTTTTGAAGTATTTGATATAGTAGGGGAGCATACTGTGGTTTTATCCCGATTATTTGATTCCTTTCTTCTGTGGAGTTTCTAACTGTTTATACTTATTCGATAGTCTCTGTTAACAACTCTATTTTGAAGAACTGGTCTAAATTCTCTATTGTGTTGCTGTTATTTATTTTGTCCCCATTTATGAAACTGCTTATTATGACCTTTGTGATAATGATATCAATAGACTAATCCCTCTATATTTCAAACAGCTGTGTCAGTCTTTATGACAGTTAGTCTCTTAAATGTTTTTAGTCCAATCAATTACACAGTTACTGAAGGTTTTGTAGATAGTTTATTACGGCCTGGAAGTTGTAAGGATAATTCATTTTTCTCTCGTGTTGCATCATTCTTCTCCCCATCATTTCACAGCTTGCCCTCTCTTTTTCCTTGTTTTGAGGCTTGTTGGGTATTTTCCCTCGTTGGATGTTCAATTCTTGTTTTCTATAGATCACTTATGCAGATCAATTATGAAGTGTTTATGAAAAATTCTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAGGTAGAATAAAATTTGTTGCCAGTAGATTTCACCTCTATCATTTTAACTGTCTTGCAAACTTGGTCATATCCATTGTAATTTCATTTGAATGTGCATGTTTTTCCTGTTTGATGGAAGACATTCGAGGCCTGCGGCTACCTTTTGTCAAACGTAAATTAGTGTTGTGCCATGTGATTCCCTGCTATTAAAATTCTGTGTGGATTACCCGCCCTCCCTTCTAAACTCTGTCTTTGCATTGTCTATTAGGTAGTTTTTGCTTGATTACTTCTTATCTTTTCAGGGGTGGATCTAGTGGCATAAGTTGAGCTACTTCTTTGCCATAGTTGTTCTCCTCATGCTGCTTAAAACTCGTATTTTTTCCTGTAGGAGCTTACTTTTCAGTTTTTGTTGAACTCCATGTTTTTTGTTTTCTTTTGATTTTGCTGCATATACTTGATGCTTATTAATGACTCATCTTACTTGATCAAAAAATAAAATAAAATTCACCTTCGCAATCATTTAGTGCATCTAGAACTTGTGTGCTCCATTGTTCTATTTTAGGGAGATTGGCTTCTGTGGTTGCTGTCCCTCTTTTTTTGTTTCATAGGTGAGATCATTTTCATGAGAAGTCACAGAAGAAATTTAGTCAACAATCATGCTATGAAAATGTGTCTTTTTCGGAATTGTTCCTTTCTAACCCATACATCGACACCTTTTTTTGTCTTCTTTCTTAGCACGTAGTGTTTGACCTGTTTGCTGCTCCTCATTGAGGTATCTTGACCCAACAATCAATCTTTCATGAATTTAGGCCTTATCCAGAACAAATTGGGTTTGATTCACTGTTTTAGCTTCTGTGTCTCCAAGATTCTGTATTTAGAACTCATCATAGTTTGACAATCTTATGCTTGCCATTAATCTACTCCAAATCTTCTCCTTTATCGGCATATGAAAGCTCACATAGACAATGTTGTGCTTGATTGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAAAGCACCAAGAAGTTGCAAATATATTGAGTTTATGACGATAAAACTCTAAACTACAACTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAGAGCACGAAGAACTTGCAAATATATTGAGTTTATGACGATAAAGCTCTAAACTATAATTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGAGAATTGCAGCAGTTAGATTATTTAGGCAATATATAGGAGTCCACCTTCAACCAAAGTTCATCTAGTGTGGCATCTTCAACCTAAGTTCATTTACTCAGTGTTTCATATTCTTTGCGTCATGAAAGATGTCTTATTTCTGTGTCTTGGTGAGCATACTGATAAGATGTTGCAATGTTAATCTTGGTGTGATGAGATCCCAGACATCTTTCATTTTTAGTTTCTACTATAGAATCTGTTTGCTATTACCTTATAAATAAGGATTCTAGATTTGCACCGCCTTTTGTCCTTTCGCTATTCTAGGAAGGTTATTTGGTGCTAGTTGTTAGACAAAAGCAAATCCATTCACTAAGTGGAATTTGTTGTGGCATCATTGAATAAGATAATGTTTGGTTCAGCAAAGGTAGGGATGCCTGACATGTCCAGATGCTTACCATCAGCTGGCGTTTCTGAATGTACTCTCTTTGAATAAAATAGGTGCTCAGCTGAGTGAATAACAGGAGGTCTGACATCTTGAGAGATTTACTGTCATCTGTTATTATTGGCTGTAGGCTGTGCCATCATTGAATATTAGGTACATTCGGGACGGCTCAAATGCTGTATAATGATGGAGAGAAACTTCTAGTAGCAGGTTTTGGTCCCTCTTTTCTACCCTGGAGTCCTCCAACCGAGAAAAATTAGGGGGGTCATTTTGGTTTTGGGTCTGCGACGAATAGGTTCAAGAGATGAGAGAATTAAGGATACCCACCAGAAAGACTAATCCAATCCATAAGGAGGTACCAGAAAATACAACATTTTTGTTACTTGACCAGCCATCAGGAGAAGCAAATACAACGGGTACGCTAATCAATAAGATTAATGAAGTAGCAATTAATGCAAAAACAGCCAATTGGAAAGCAAGAGTCATGCTTTTAATCCTCCAAGCTACCAACAAATGAACTATATACCATTAGACCGTTAGAGAATATTGATGGATGTGAAAATATGACTGAAATCGTCATAAGCTGGAGTTTATACTGGGAAACTGGTTGCATGGGATTCCATAATCATACATACATGTCCAGAAATGTCAACTTAAATTTGACTTATATCTGTCAAGTGTCTGGATGGTTTGTCTAGCTAGAGTCCAATCTCGTTAATGTGCTTTCCTATGTTACTCGGATTCTTCATAAACAGCAATGGGGTGTGTGGGATCCTCCAAGATCAGTGCATTTTTTGGAGGATCTGACACAAGTATGGCATCACTATTGGAGAGTCCGAGCAGCATAGGTGGCTTACGTTGGTTAAATGGTTATCTGATATTAATTTAGTGAGGATAATTGTTTTATTTTGGGAATCATGTATACAGGAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAGGTTCTCATATACTGGACCTAACATATATAGTTACTGTTTCTTTTCCCATTTTGTTTGAGCACATGTTTTCAGCTATTATCTTTGATGTTCAGCCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAGGATGAAAGTGGGGA</genome_strand>
        <mrna_strand>TTTCTTACAATTTCTCTACTTGCTTCTCACAATTTCTCATGAAAATTTGAGCTTTTCTCTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAGAGGAAACCCTAGTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAGACTCGATTTTTTTCTTGTGGGGTTGTTAAAAATTGAGTGAAGAGAAGGATAATATGGAAAATACGGTACCTAGGACTGTAGAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAG...........................................................................................................................................ATGTCGAGAAGTTCTATCAGTCGTGTGATCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAG............................................................................................CCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAAGATGAAAGTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720229" ref_strand="+" ref_description="SGN-E720229 [FC10AG06]">
      <seq>ttctctctctctctctatatatccgtttcttacaatttctctacttgcttctcacaatttctcatgaaaatttgagcttttctctttatgaatcttcatttttcacagcacatagcaagctatttttaaagttttgggcaacatgaagaggaaaccctagttctttggggaaaaaaccctaattttcttgttttttttcaaagactcgatttttttcttgtggggttgttaaaaattgagtgaagagaaggataatatggaaaatacggtacctaggactgtagaaaaagtattcaacgatttcaaaggtcgtaaagctggtttaattaaagcactaactacagatgtcgagaagttctatcagtcgtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctccctgttgaggaggtgcctccagaacttccggagccagcattaggcataaactttgcacgtgatggaatgcaagagaaagactggttatcacttgttgctgttcatagtgattcatggctgctttctgttgcattctactttggcgcacggtttgggtttggcaagagtgaaaggaagaggcttttccaaatgacaaatgatctcccaacagtgtttgaggttgttactggagctgctaagcaggcacgcgatgccgctcacaacaatagcagcaaaagcaaatcaagtggaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="68352" stop="62454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68052" g_stop="67709" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67708" i_stop="67570" i_length="139">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67569" g_stop="67537" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="377" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67536" i_stop="65715" i_length="1822">
            <donor d_prob="0.490" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65714" g_stop="65486" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="606" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65485" i_stop="62875" i_length="2611">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62874" g_stop="62754" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="727" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E720229" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68052" e_stop="67709"/>
          <exon e_start="67569" e_stop="67537"/>
          <exon e_start="65714" e_stop="65486"/>
          <exon e_start="62874" e_stop="62754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTCTCTCTCTATATATCCGTTTCTTACAATTTCTCTACTTGCTTCTCACAATTTCTCATGAAAATTTGAGCTTTTCTCTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAGAGGAAACCCTAGTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAGACTCGATTTTTTTCTTGTGGGGTTGTTAAAAATTGAGTGAAGAGAAGGATAATATGGAAAATACGGTACCTAGGACTGTAGAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAGGTTTGTAGTGTTGTTTCCTTTTTTTTTTTCTTAAAATTTTCTTGCACTTTTTATGGGGTTTTGAGCATAATTTCATTCTGGGTGTTCCTGAATTTTGTTGGTTTTTACTAATTATGATGTTCTTAAAAAAATTATGCAGATGTCGAGAAGTTCTATCAGTCGTGTGATCCTGGTGAGTTTTCTGCTGCTCAGTTTTGATGGACTGTTGCGGTCCGTCAATATTCACGTTTGGTTCTTCTGTGCTATGAGCTTGAGCTGTATTTCTAAATGCAGTATATGTCTTGGAGGCTATAGCTTTTAATTTCTGGGACCGTTCTTTGTATTCATATTTTTTCTTCAAATTGCTGCTCTTTTATGTTCTCATTGAGCGATTTGGTTGAGTGATTAATTAGGACTTTGTCACTCTTTAATATTTCAGAATTTTGTAATTTGCTTCTTGTCCCCTTTTTTTTGGGTCACTTTTGTAATTTCAGTGCTGTTTGTCCTAGGGAGTGGCCTAAAATTCATGTTAGAGCTTTCTGACTGTTTACATTAGGGCTGTGTATCGGCTAGTTCGGTTCAGTTTTGAAGTTTATTGGGTTGGCTTATTGGTTATCGGTTTGTAGAGATGCTAAACCGTTATAGAACCATTATGATATTGGCTTTATCGGTTATTGATTTATCGGTTTTTTATCGTTATCGGTTTAACCGTTAAGATTTGACACAAAAGAAAAAACATTGAAAATCATTTAAAAACAAGGTGACAAACCAAATAAACCATGCACTTGAGTTCACAAGTTACATCTTGCTCTAAAGCAAACACTTTTACATTGTAGAATAATCAAGTGTTTGAGACAACCAAAAAATAAAATTAGGAAATTAAACTCCAAGTCGAGAACTTTATATACAAAATGGTATAAATATAATTATTTAATTTACTATTGGGTTACTGGTTAACCCATTAAGAACAAAACTTTAAACCGTTAAGAACCAATAACCCGATTAACAAAAAAAATCAAAATCGTTATCAAAACCACTAAAACAATAACCTAATACTTTTTTATCGATTTGGTTTTGAACAGCCCTAGTTTACATCATTTTGTCATTTGATGTTCTGCTTTGGTGTTATGCAGGAACAGAAAGATCATATCTTTATTGAGTAGTTAATTGTCGCCTTCGATATGAAAGAGTAATTCTTCTGCATTTTCAACAGAATTATCATTATCTAAAACTGCTTTGCAAAACATGATCTTTAAAAATGAGATCATTACTTAGAATTTTATGTCGTTTAGTGAGAGTGTCAGTGTCAGAAGTGTTCTCATCATTGTCTTGATGACTTTTTATCAGTTCTCAAGGAAGAAGAGGTGTAAAGCTTCTTTTATGTAGCAATGAGTCATCATTTCTCTATCACAGTGACACAGTGTCTCCAACCATAATTTATCTTGCTATTTATGAAATTTTTTTGAAGTATTTGATATAGTAGGGGAGCATACTGTGGTTTTATCCCGATTATTTGATTCCTTTCTTCTGTGGAGTTTCTAACTGTTTATACTTATTCGATAGTCTCTGTTAACAACTCTATTTTGAAGAACTGGTCTAAATTCTCTATTGTGTTGCTGTTATTTATTTTGTCCCCATTTATGAAACTGCTTATTATGACCTTTGTGATAATGATATCAATAGACTAATCCCTCTATATTTCAAACAGCTGTGTCAGTCTTTATGACAGTTAGTCTCTTAAATGTTTTTAGTCCAATCAATTACACAGTTACTGAAGGTTTTGTAGATAGTTTATTACGGCCTGGAAGTTGTAAGGATAATTCATTTTTCTCTCGTGTTGCATCATTCTTCTCCCCATCATTTCACAGCTTGCCCTCTCTTTTTCCTTGTTTTGAGGCTTGTTGGGTATTTTCCCTCGTTGGATGTTCAATTCTTGTTTTCTATAGATCACTTATGCAGATCAATTATGAAGTGTTTATGAAAAATTCTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAGGTAGAATAAAATTTGTTGCCAGTAGATTTCACCTCTATCATTTTAACTGTCTTGCAAACTTGGTCATATCCATTGTAATTTCATTTGAATGTGCATGTTTTTCCTGTTTGATGGAAGACATTCGAGGCCTGCGGCTACCTTTTGTCAAACGTAAATTAGTGTTGTGCCATGTGATTCCCTGCTATTAAAATTCTGTGTGGATTACCCGCCCTCCCTTCTAAACTCTGTCTTTGCATTGTCTATTAGGTAGTTTTTGCTTGATTACTTCTTATCTTTTCAGGGGTGGATCTAGTGGCATAAGTTGAGCTACTTCTTTGCCATAGTTGTTCTCCTCATGCTGCTTAAAACTCGTATTTTTTCCTGTAGGAGCTTACTTTTCAGTTTTTGTTGAACTCCATGTTTTTTGTTTTCTTTTGATTTTGCTGCATATACTTGATGCTTATTAATGACTCATCTTACTTGATCAAAAAATAAAATAAAATTCACCTTCGCAATCATTTAGTGCATCTAGAACTTGTGTGCTCCATTGTTCTATTTTAGGGAGATTGGCTTCTGTGGTTGCTGTCCCTCTTTTTTTGTTTCATAGGTGAGATCATTTTCATGAGAAGTCACAGAAGAAATTTAGTCAACAATCATGCTATGAAAATGTGTCTTTTTCGGAATTGTTCCTTTCTAACCCATACATCGACACCTTTTTTTGTCTTCTTTCTTAGCACGTAGTGTTTGACCTGTTTGCTGCTCCTCATTGAGGTATCTTGACCCAACAATCAATCTTTCATGAATTTAGGCCTTATCCAGAACAAATTGGGTTTGATTCACTGTTTTAGCTTCTGTGTCTCCAAGATTCTGTATTTAGAACTCATCATAGTTTGACAATCTTATGCTTGCCATTAATCTACTCCAAATCTTCTCCTTTATCGGCATATGAAAGCTCACATAGACAATGTTGTGCTTGATTGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAAAGCACCAAGAAGTTGCAAATATATTGAGTTTATGACGATAAAACTCTAAACTACAACTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAGAGCACGAAGAACTTGCAAATATATTGAGTTTATGACGATAAAGCTCTAAACTATAATTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGAGAATTGCAGCAGTTAGATTATTTAGGCAATATATAGGAGTCCACCTTCAACCAAAGTTCATCTAGTGTGGCATCTTCAACCTAAGTTCATTTACTCAGTGTTTCATATTCTTTGCGTCATGAAAGATGTCTTATTTCTGTGTCTTGGTGAGCATACTGATAAGATGTTGCAATGTTAATCTTGGTGTGATGAGATCCCAGACATCTTTCATTTTTAGTTTCTACTATAGAATCTGTTTGCTATTACCTTATAAATAAGGATTCTAGATTTGCACCGCCTTTTGTCCTTTCGCTATTCTAGGAAGGTTATTTGGTGCTAGTTGTTAGACAAAAGCAAATCCATTCACTAAGTGGAATTTGTTGTGGCATCATTGAATAAGATAATGTTTGGTTCAGCAAAGGTAGGGATGCCTGACATGTCCAGATGCTTACCATCAGCTGGCGTTTCTGAATGTACTCTCTTTGAATAAAATAGGTGCTCAGCTGAGTGAATAACAGGAGGTCTGACATCTTGAGAGATTTACTGTCATCTGTTATTATTGGCTGTAGGCTGTGCCATCATTGAATATTAGGTACATTCGGGACGGCTCAAATGCTGTATAATGATGGAGAGAAACTTCTAGTAGCAGGTTTTGGTCCCTCTTTTCTACCCTGGAGTCCTCCAACCGAGAAAAATTAGGGGGGTCATTTTGGTTTTGGGTCTGCGACGAATAGGTTCAAGAGATGAGAGAATTAAGGATACCCACCAGAAAGACTAATCCAATCCATAAGGAGGTACCAGAAAATACAACATTTTTGTTACTTGACCAGCCATCAGGAGAAGCAAATACAACGGGTACGCTAATCAATAAGATTAATGAAGTAGCAATTAATGCAAAAACAGCCAATTGGAAAGCAAGAGTCATGCTTTTAATCCTCCAAGCTACCAACAAATGAACTATATACCATTAGACCGTTAGAGAATATTGATGGATGTGAAAATATGACTGAAATCGTCATAAGCTGGAGTTTATACTGGGAAACTGGTTGCATGGGATTCCATAATCATACATACATGTCCAGAAATGTCAACTTAAATTTGACTTATATCTGTCAAGTGTCTGGATGGTTTGTCTAGCTAGAGTCCAATCTCGTTAATGTGCTTTCCTATGTTACTCGGATTCTTCATAAACAGCAATGGGGTGTGTGGGATCCTCCAAGATCAGTGCATTTTTTGGAGGATCTGACACAAGTATGGCATCACTATTGGAGAGTCCGAGCAGCATAGGTGGCTTACGTTGGTTAAATGGTTATCTGATATTAATTTAGTGAGGATAATTGTTTTATTTTGGGAATCATGTATACAGGAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAG</genome_strand>
        <mrna_strand>TTCTCTCTCTCTCTCTATATATCCGTTTCTTACAATTTCTCTACTTGCTTCTCACAATTTCTCATGAAAATTTGAGCTTTTCTCTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAGAGGAAACCCTAGTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAGACTCGATTTTTTTCTTGTGGGGTTGTTAAAAATTGAGTGAAGAGAAGGATAATATGGAAAATACGGTACCTAGGACTGTAGAAAAAGTATTCAACGATTTCAAAGGTCGTAAAGCTGGTTTAATTAAAGCACTAACTACAG...........................................................................................................................................ATGTCGAGAAGTTCTATCAGTCGTGTGATCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577618" ref_strand="+" ref_description="SGN-E577618 [LE15AG09]">
      <seq>caccaccccactttcctctttcttcatgctcttctctctctctctctatatatccgtttcttacaatttctctacttgcttctcacaatttctcatgaaaatttgagcttttctctttatgaatcttcatttttcacagcacatagcaagctatttttaaagttttgggcaacatgaagaggaaaccctagttctttggggaaaaaaccctaattttcttgttttttttcaaagactcgatttttttcttgtggggttgttaaaaattgagtgaagagaaggataatatggaaaatacggtacctaggactgtagaagaagtattcaacgatttcaaaggtcgtagagctggtttaattaaagcactaactacagatgtcgagaagttctatcagtcgtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctccctgttgaggaggtgcctccagaacttccggagccagcattaggcataaactttgcacgtgatggaatgcaagagaaagactggttatcacttgttgctgttcatagtgattcatggctgctttctgttgcattctactttggcgcacggtttgggtttggcaagagtgaaaggaagaggcttttccaaatgacaaatgatctcccaacagtgtttgaggttgttactggagctgctaagcaggcacgcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="68383" stop="62496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68083" g_stop="67709" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67708" i_stop="67570" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67569" g_stop="67537" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="408" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67536" i_stop="65715" i_length="1822">
            <donor d_prob="0.490" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65714" g_stop="65486" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="637" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65485" i_stop="62875" i_length="2611">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62874" g_stop="62796" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="716" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E577618" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68083" e_stop="67709"/>
          <exon e_start="67569" e_stop="67537"/>
          <exon e_start="65714" e_stop="65486"/>
          <exon e_start="62874" e_stop="62796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCCCACTTTCCTCTTTCTTCATGCTCTTCTCTCTCTCTCTCTATATATCCGTTTCTTACAATTTCTCTACTTGCTTCTCACAATTTCTCATGAAAATTTGAGCTTTTCTCTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAGAGGAAACCCTAGTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAGACTCGATTTTTTTCTTGTGGGGTTGTTAAAAATTGAGTGAAGAGAAGGATAATATGGAAAATACGGTACCTAGGACTGTAGAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAGGTTTGTAGTGTTGTTTCCTTTTTTTTTTTCTTAAAATTTTCTTGCACTTTTTATGGGGTTTTGAGCATAATTTCATTCTGGGTGTTCCTGAATTTTGTTGGTTTTTACTAATTATGATGTTCTTAAAAAAATTATGCAGATGTCGAGAAGTTCTATCAGTCGTGTGATCCTGGTGAGTTTTCTGCTGCTCAGTTTTGATGGACTGTTGCGGTCCGTCAATATTCACGTTTGGTTCTTCTGTGCTATGAGCTTGAGCTGTATTTCTAAATGCAGTATATGTCTTGGAGGCTATAGCTTTTAATTTCTGGGACCGTTCTTTGTATTCATATTTTTTCTTCAAATTGCTGCTCTTTTATGTTCTCATTGAGCGATTTGGTTGAGTGATTAATTAGGACTTTGTCACTCTTTAATATTTCAGAATTTTGTAATTTGCTTCTTGTCCCCTTTTTTTTGGGTCACTTTTGTAATTTCAGTGCTGTTTGTCCTAGGGAGTGGCCTAAAATTCATGTTAGAGCTTTCTGACTGTTTACATTAGGGCTGTGTATCGGCTAGTTCGGTTCAGTTTTGAAGTTTATTGGGTTGGCTTATTGGTTATCGGTTTGTAGAGATGCTAAACCGTTATAGAACCATTATGATATTGGCTTTATCGGTTATTGATTTATCGGTTTTTTATCGTTATCGGTTTAACCGTTAAGATTTGACACAAAAGAAAAAACATTGAAAATCATTTAAAAACAAGGTGACAAACCAAATAAACCATGCACTTGAGTTCACAAGTTACATCTTGCTCTAAAGCAAACACTTTTACATTGTAGAATAATCAAGTGTTTGAGACAACCAAAAAATAAAATTAGGAAATTAAACTCCAAGTCGAGAACTTTATATACAAAATGGTATAAATATAATTATTTAATTTACTATTGGGTTACTGGTTAACCCATTAAGAACAAAACTTTAAACCGTTAAGAACCAATAACCCGATTAACAAAAAAAATCAAAATCGTTATCAAAACCACTAAAACAATAACCTAATACTTTTTTATCGATTTGGTTTTGAACAGCCCTAGTTTACATCATTTTGTCATTTGATGTTCTGCTTTGGTGTTATGCAGGAACAGAAAGATCATATCTTTATTGAGTAGTTAATTGTCGCCTTCGATATGAAAGAGTAATTCTTCTGCATTTTCAACAGAATTATCATTATCTAAAACTGCTTTGCAAAACATGATCTTTAAAAATGAGATCATTACTTAGAATTTTATGTCGTTTAGTGAGAGTGTCAGTGTCAGAAGTGTTCTCATCATTGTCTTGATGACTTTTTATCAGTTCTCAAGGAAGAAGAGGTGTAAAGCTTCTTTTATGTAGCAATGAGTCATCATTTCTCTATCACAGTGACACAGTGTCTCCAACCATAATTTATCTTGCTATTTATGAAATTTTTTTGAAGTATTTGATATAGTAGGGGAGCATACTGTGGTTTTATCCCGATTATTTGATTCCTTTCTTCTGTGGAGTTTCTAACTGTTTATACTTATTCGATAGTCTCTGTTAACAACTCTATTTTGAAGAACTGGTCTAAATTCTCTATTGTGTTGCTGTTATTTATTTTGTCCCCATTTATGAAACTGCTTATTATGACCTTTGTGATAATGATATCAATAGACTAATCCCTCTATATTTCAAACAGCTGTGTCAGTCTTTATGACAGTTAGTCTCTTAAATGTTTTTAGTCCAATCAATTACACAGTTACTGAAGGTTTTGTAGATAGTTTATTACGGCCTGGAAGTTGTAAGGATAATTCATTTTTCTCTCGTGTTGCATCATTCTTCTCCCCATCATTTCACAGCTTGCCCTCTCTTTTTCCTTGTTTTGAGGCTTGTTGGGTATTTTCCCTCGTTGGATGTTCAATTCTTGTTTTCTATAGATCACTTATGCAGATCAATTATGAAGTGTTTATGAAAAATTCTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAGGTAGAATAAAATTTGTTGCCAGTAGATTTCACCTCTATCATTTTAACTGTCTTGCAAACTTGGTCATATCCATTGTAATTTCATTTGAATGTGCATGTTTTTCCTGTTTGATGGAAGACATTCGAGGCCTGCGGCTACCTTTTGTCAAACGTAAATTAGTGTTGTGCCATGTGATTCCCTGCTATTAAAATTCTGTGTGGATTACCCGCCCTCCCTTCTAAACTCTGTCTTTGCATTGTCTATTAGGTAGTTTTTGCTTGATTACTTCTTATCTTTTCAGGGGTGGATCTAGTGGCATAAGTTGAGCTACTTCTTTGCCATAGTTGTTCTCCTCATGCTGCTTAAAACTCGTATTTTTTCCTGTAGGAGCTTACTTTTCAGTTTTTGTTGAACTCCATGTTTTTTGTTTTCTTTTGATTTTGCTGCATATACTTGATGCTTATTAATGACTCATCTTACTTGATCAAAAAATAAAATAAAATTCACCTTCGCAATCATTTAGTGCATCTAGAACTTGTGTGCTCCATTGTTCTATTTTAGGGAGATTGGCTTCTGTGGTTGCTGTCCCTCTTTTTTTGTTTCATAGGTGAGATCATTTTCATGAGAAGTCACAGAAGAAATTTAGTCAACAATCATGCTATGAAAATGTGTCTTTTTCGGAATTGTTCCTTTCTAACCCATACATCGACACCTTTTTTTGTCTTCTTTCTTAGCACGTAGTGTTTGACCTGTTTGCTGCTCCTCATTGAGGTATCTTGACCCAACAATCAATCTTTCATGAATTTAGGCCTTATCCAGAACAAATTGGGTTTGATTCACTGTTTTAGCTTCTGTGTCTCCAAGATTCTGTATTTAGAACTCATCATAGTTTGACAATCTTATGCTTGCCATTAATCTACTCCAAATCTTCTCCTTTATCGGCATATGAAAGCTCACATAGACAATGTTGTGCTTGATTGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAAAGCACCAAGAAGTTGCAAATATATTGAGTTTATGACGATAAAACTCTAAACTACAACTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGATGGTGTTGAGTTTAAAACATCTTTTTTCATTCTAAGGATATACTTTATTCGCAGAGCACGAAGAACTTGCAAATATATTGAGTTTATGACGATAAAGCTCTAAACTATAATTTTTATGTAATTAGGATTACTAAGCTAGAACTCTAGGATAGAGAATTGCAGCAGTTAGATTATTTAGGCAATATATAGGAGTCCACCTTCAACCAAAGTTCATCTAGTGTGGCATCTTCAACCTAAGTTCATTTACTCAGTGTTTCATATTCTTTGCGTCATGAAAGATGTCTTATTTCTGTGTCTTGGTGAGCATACTGATAAGATGTTGCAATGTTAATCTTGGTGTGATGAGATCCCAGACATCTTTCATTTTTAGTTTCTACTATAGAATCTGTTTGCTATTACCTTATAAATAAGGATTCTAGATTTGCACCGCCTTTTGTCCTTTCGCTATTCTAGGAAGGTTATTTGGTGCTAGTTGTTAGACAAAAGCAAATCCATTCACTAAGTGGAATTTGTTGTGGCATCATTGAATAAGATAATGTTTGGTTCAGCAAAGGTAGGGATGCCTGACATGTCCAGATGCTTACCATCAGCTGGCGTTTCTGAATGTACTCTCTTTGAATAAAATAGGTGCTCAGCTGAGTGAATAACAGGAGGTCTGACATCTTGAGAGATTTACTGTCATCTGTTATTATTGGCTGTAGGCTGTGCCATCATTGAATATTAGGTACATTCGGGACGGCTCAAATGCTGTATAATGATGGAGAGAAACTTCTAGTAGCAGGTTTTGGTCCCTCTTTTCTACCCTGGAGTCCTCCAACCGAGAAAAATTAGGGGGGTCATTTTGGTTTTGGGTCTGCGACGAATAGGTTCAAGAGATGAGAGAATTAAGGATACCCACCAGAAAGACTAATCCAATCCATAAGGAGGTACCAGAAAATACAACATTTTTGTTACTTGACCAGCCATCAGGAGAAGCAAATACAACGGGTACGCTAATCAATAAGATTAATGAAGTAGCAATTAATGCAAAAACAGCCAATTGGAAAGCAAGAGTCATGCTTTTAATCCTCCAAGCTACCAACAAATGAACTATATACCATTAGACCGTTAGAGAATATTGATGGATGTGAAAATATGACTGAAATCGTCATAAGCTGGAGTTTATACTGGGAAACTGGTTGCATGGGATTCCATAATCATACATACATGTCCAGAAATGTCAACTTAAATTTGACTTATATCTGTCAAGTGTCTGGATGGTTTGTCTAGCTAGAGTCCAATCTCGTTAATGTGCTTTCCTATGTTACTCGGATTCTTCATAAACAGCAATGGGGTGTGTGGGATCCTCCAAGATCAGTGCATTTTTTGGAGGATCTGACACAAGTATGGCATCACTATTGGAGAGTCCGAGCAGCATAGGTGGCTTACGTTGGTTAAATGGTTATCTGATATTAATTTAGTGAGGATAATTGTTTTATTTTGGGAATCATGTATACAGGAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGAT</genome_strand>
        <mrna_strand>CACCACCCCACTTTCCTCTTTCTTCATGCTCTTCTCTCTCTCTCTCTATATATCCGTTTCTTACAATTTCTCTACTTGCTTCTCACAATTTCTCATGAAAATTTGAGCTTTTCTCTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAGAGGAAACCCTAGTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAGACTCGATTTTTTTCTTGTGGGGTTGTTAAAAATTGAGTGAAGAGAAGGATAATATGGAAAATACGGTACCTAGGACTGTAGAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAG...........................................................................................................................................ATGTCGAGAAGTTCTATCAGTCGTGTGATCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725376" ref_strand="+" ref_description="SGN-E725376 [FC26DF06]">
      <seq>gctctctctgccacaattttttttttttcataatttttgaaaaaaccaataaatccaagtactcgtacactagggctacatgtatctatttaccaaaaaagaaactcaaataaaggctgctactaaaaccctttccccaccaccccactttcctctttcttcaggctcttctctctctctctctatatatccgtttcttacaatttctctacttgcttctcacaatttctcatgaaaatttgagcttttctctttatgaatcttcatttttcacagcacatagcaagctatttttaaagttttgggcaacatgaaaagaaaaccctatttctttggggaaaaaaccctaattttcttgttttttttcaaaaactcaatttttttcttggggggttgttaaaaattgagtgaaaaaaaggataatatggaaaatacggtacctaggactgtaaaaaaagtattcaacgatttcaaaggtcgaaaagctggtttaattaaagcactaactacagatgtcgagaagttctatcagtcgggtgatcctgaaaaggaaaacttgggtctctatgggcttcctaatgaaacatggaaagtaaacctccctgttgaggaggtgcctccaaaacttccggagccagcattaggcataaactttgcacgtgatggaatgcaaaaaaaaaacgggttatcacttgttgctgttcatagggattcagggctgctttctgtggcattctactttggcgcacggtttgggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="68518" stop="65199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68219" g_stop="67709" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67708" i_stop="67570" i_length="139">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67569" g_stop="67537" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="545" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67536" i_stop="65715" i_length="1822">
            <donor d_prob="0.490" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65714" g_stop="65499" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="761" r_length="216" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E725376" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68219" e_stop="67709"/>
          <exon e_start="67569" e_stop="67537"/>
          <exon e_start="65714" e_stop="65499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTGCCACAA-TTTTTTTTTTTCATAATTTTTGAAAGAACCAATAGATCCAAGTACTCGTACACTAGTGCTACATGTATCTATTTACCAAAAAAGAAACTCAAATAAATGCTGCTACTAAAACCCTTTCCCCACCACCCCACTTTCCTCTTTCTTCATGCTCTTCTCTCTCTCTCTCTATATATCCGTTTCTTACAATTTCTCTACTTGCTTCTCACAATTTCTCATGAAAATTTGAGCTTTTCTCTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAGAGGAAACCCTAGTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAGACTCGATTTTTTTCTTGTGGGGTTGTTAAAAATTGAGTGAAGAGAAGGATAATATGGAAAATACGGTACCTAGGACTGTAGAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAGGTTTGTAGTGTTGTTTCCTTTTTTTTTTTCTTAAAATTTTCTTGCACTTTTTATGGGGTTTTGAGCATAATTTCATTCTGGGTGTTCCTGAATTTTGTTGGTTTTTACTAATTATGATGTTCTTAAAAAAATTATGCAGATGTCGAGAAGTTCTATCAGTCGTGTGATCCTGGTGAGTTTTCTGCTGCTCAGTTTTGATGGACTGTTGCGGTCCGTCAATATTCACGTTTGGTTCTTCTGTGCTATGAGCTTGAGCTGTATTTCTAAATGCAGTATATGTCTTGGAGGCTATAGCTTTTAATTTCTGGGACCGTTCTTTGTATTCATATTTTTTCTTCAAATTGCTGCTCTTTTATGTTCTCATTGAGCGATTTGGTTGAGTGATTAATTAGGACTTTGTCACTCTTTAATATTTCAGAATTTTGTAATTTGCTTCTTGTCCCCTTTTTTTTGGGTCACTTTTGTAATTTCAGTGCTGTTTGTCCTAGGGAGTGGCCTAAAATTCATGTTAGAGCTTTCTGACTGTTTACATTAGGGCTGTGTATCGGCTAGTTCGGTTCAGTTTTGAAGTTTATTGGGTTGGCTTATTGGTTATCGGTTTGTAGAGATGCTAAACCGTTATAGAACCATTATGATATTGGCTTTATCGGTTATTGATTTATCGGTTTTTTATCGTTATCGGTTTAACCGTTAAGATTTGACACAAAAGAAAAAACATTGAAAATCATTTAAAAACAAGGTGACAAACCAAATAAACCATGCACTTGAGTTCACAAGTTACATCTTGCTCTAAAGCAAACACTTTTACATTGTAGAATAATCAAGTGTTTGAGACAACCAAAAAATAAAATTAGGAAATTAAACTCCAAGTCGAGAACTTTATATACAAAATGGTATAAATATAATTATTTAATTTACTATTGGGTTACTGGTTAACCCATTAAGAACAAAACTTTAAACCGTTAAGAACCAATAACCCGATTAACAAAAAAAATCAAAATCGTTATCAAAACCACTAAAACAATAACCTAATACTTTTTTATCGATTTGGTTTTGAACAGCCCTAGTTTACATCATTTTGTCATTTGATGTTCTGCTTTGGTGTTATGCAGGAACAGAAAGATCATATCTTTATTGAGTAGTTAATTGTCGCCTTCGATATGAAAGAGTAATTCTTCTGCATTTTCAACAGAATTATCATTATCTAAAACTGCTTTGCAAAACATGATCTTTAAAAATGAGATCATTACTTAGAATTTTATGTCGTTTAGTGAGAGTGTCAGTGTCAGAAGTGTTCTCATCATTGTCTTGATGACTTTTTATCAGTTCTCAAGGAAGAAGAGGTGTAAAGCTTCTTTTATGTAGCAATGAGTCATCATTTCTCTATCACAGTGACACAGTGTCTCCAACCATAATTTATCTTGCTATTTATGAAATTTTTTTGAAGTATTTGATATAGTAGGGGAGCATACTGTGGTTTTATCCCGATTATTTGATTCCTTTCTTCTGTGGAGTTTCTAACTGTTTATACTTATTCGATAGTCTCTGTTAACAACTCTATTTTGAAGAACTGGTCTAAATTCTCTATTGTGTTGCTGTTATTTATTTTGTCCCCATTTATGAAACTGCTTATTATGACCTTTGTGATAATGATATCAATAGACTAATCCCTCTATATTTCAAACAGCTGTGTCAGTCTTTATGACAGTTAGTCTCTTAAATGTTTTTAGTCCAATCAATTACACAGTTACTGAAGGTTTTGTAGATAGTTTATTACGGCCTGGAAGTTGTAAGGATAATTCATTTTTCTCTCGTGTTGCATCATTCTTCTCCCCATCATTTCACAGCTTGCCCTCTCTTTTTCCTTGTTTTGAGGCTTGTTGGGTATTTTCCCTCGTTGGATGTTCAATTCTTGTTTTCTATAGATCACTTATGCAGATCAATTATGAAGTGTTTATGAAAAATTCTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTG</genome_strand>
        <mrna_strand>GCTCTCTCTGCCACAATTTTTTTTTTTTCATAATTTTTGAAAAAACCAATAAATCCAAGTACTCGTACACTAGGGCTACATGTATCTATTTACCAAAAAAGAAACTCAAATAAAGGCTGCTACTAAAACCCTTTCCCCACCACCCCACTTTCCTCTTTCTTCAGGCTCTTCTCTCTCTCTCTCTATATATCCGTTTCTTACAATTTCTCTACTTGCTTCTCACAATTTCTCATGAAAATTTGAGCTTTTCTCTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAAAGAAAACCCTATTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAAACTCAATTTTTTTCTTGGGGGGTTGTTAAAAATTGAGTGAAAAAAAGGATAATATGGAAAATACGGTACCTAGGACTGTAAAAAAAGTATTCAACGATTTCAAAGGTCGAAAAGCTGGTTTAATTAAAGCACTAACTACAG...........................................................................................................................................ATGTCGAGAAGTTCTATCAGTCGGGTGATCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAAAACTTGGGTCTCTATGGGCTTCCTAATGAAACATGGAAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAAAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAAAAAAAAACGGGTTATCACTTGTTGCTGTTCATAGGGATTCAGGGCTGCTTTCTGTGGCATTCTACTTTGGCGCACGGTTTGGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314583" ref_strand="+" ref_description="SGN-E314583 [cTOA-20-G12]">
      <seq>tttcttcatgctcttctctctctctctctatatatccgtttcttacaatttctctacttgcttctacgaatttctcatgaaaatttgagcttttcactttatgaatcttcatttttcacagcacatagcaagctatttttaaagttttgggcaacatgaagaggaaaccctagttctttggggaaaaaaccctaattttcttgttttttttcgaagactcgatttttttattgtggggttgttaaaaattgagcgaacagaaggataatatggaaaatacggtacctacgactgtacaagaagtattcaacgatttcaaaggtcgtagagctggtttaattaaagcactaactacagatgtcgagaagtgctatcagtcatgtgatcctgacaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctccctgttgaggaggtgcctccagaacttccggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="68365" stop="65325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68065" g_stop="67709" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67708" i_stop="67570" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67569" g_stop="67537" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="390" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67536" i_stop="65715" i_length="1822">
            <donor d_prob="0.490" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65714" g_stop="65625" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="480" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E314583" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68065" e_stop="67709"/>
          <exon e_start="67569" e_stop="67537"/>
          <exon e_start="65714" e_stop="65625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCATGCTCTTCTCTCTCTCTCTCTATATATCCGTTTCTTACAATTTCTCTACTTGCTTCTCACAATTTCTCATGAAAATTTGAGCTTTTCTCTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAGAGGAAACCCTAGTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAGACTCGATTTTTTTCTTGTGGGGTTGTTAAAAATTGAGTGAAGAGAAGGATAATATGGAAAATACGGTACCTAGGACTGTAGAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAGGTTTGTAGTGTTGTTTCCTTTTTTTTTTTCTTAAAATTTTCTTGCACTTTTTATGGGGTTTTGAGCATAATTTCATTCTGGGTGTTCCTGAATTTTGTTGGTTTTTACTAATTATGATGTTCTTAAAAAAATTATGCAGATGTCGAGAAGTTCTATCAGTCGTGTGATCCTGGTGAGTTTTCTGCTGCTCAGTTTTGATGGACTGTTGCGGTCCGTCAATATTCACGTTTGGTTCTTCTGTGCTATGAGCTTGAGCTGTATTTCTAAATGCAGTATATGTCTTGGAGGCTATAGCTTTTAATTTCTGGGACCGTTCTTTGTATTCATATTTTTTCTTCAAATTGCTGCTCTTTTATGTTCTCATTGAGCGATTTGGTTGAGTGATTAATTAGGACTTTGTCACTCTTTAATATTTCAGAATTTTGTAATTTGCTTCTTGTCCCCTTTTTTTTGGGTCACTTTTGTAATTTCAGTGCTGTTTGTCCTAGGGAGTGGCCTAAAATTCATGTTAGAGCTTTCTGACTGTTTACATTAGGGCTGTGTATCGGCTAGTTCGGTTCAGTTTTGAAGTTTATTGGGTTGGCTTATTGGTTATCGGTTTGTAGAGATGCTAAACCGTTATAGAACCATTATGATATTGGCTTTATCGGTTATTGATTTATCGGTTTTTTATCGTTATCGGTTTAACCGTTAAGATTTGACACAAAAGAAAAAACATTGAAAATCATTTAAAAACAAGGTGACAAACCAAATAAACCATGCACTTGAGTTCACAAGTTACATCTTGCTCTAAAGCAAACACTTTTACATTGTAGAATAATCAAGTGTTTGAGACAACCAAAAAATAAAATTAGGAAATTAAACTCCAAGTCGAGAACTTTATATACAAAATGGTATAAATATAATTATTTAATTTACTATTGGGTTACTGGTTAACCCATTAAGAACAAAACTTTAAACCGTTAAGAACCAATAACCCGATTAACAAAAAAAATCAAAATCGTTATCAAAACCACTAAAACAATAACCTAATACTTTTTTATCGATTTGGTTTTGAACAGCCCTAGTTTACATCATTTTGTCATTTGATGTTCTGCTTTGGTGTTATGCAGGAACAGAAAGATCATATCTTTATTGAGTAGTTAATTGTCGCCTTCGATATGAAAGAGTAATTCTTCTGCATTTTCAACAGAATTATCATTATCTAAAACTGCTTTGCAAAACATGATCTTTAAAAATGAGATCATTACTTAGAATTTTATGTCGTTTAGTGAGAGTGTCAGTGTCAGAAGTGTTCTCATCATTGTCTTGATGACTTTTTATCAGTTCTCAAGGAAGAAGAGGTGTAAAGCTTCTTTTATGTAGCAATGAGTCATCATTTCTCTATCACAGTGACACAGTGTCTCCAACCATAATTTATCTTGCTATTTATGAAATTTTTTTGAAGTATTTGATATAGTAGGGGAGCATACTGTGGTTTTATCCCGATTATTTGATTCCTTTCTTCTGTGGAGTTTCTAACTGTTTATACTTATTCGATAGTCTCTGTTAACAACTCTATTTTGAAGAACTGGTCTAAATTCTCTATTGTGTTGCTGTTATTTATTTTGTCCCCATTTATGAAACTGCTTATTATGACCTTTGTGATAATGATATCAATAGACTAATCCCTCTATATTTCAAACAGCTGTGTCAGTCTTTATGACAGTTAGTCTCTTAAATGTTTTTAGTCCAATCAATTACACAGTTACTGAAGGTTTTGTAGATAGTTTATTACGGCCTGGAAGTTGTAAGGATAATTCATTTTTCTCTCGTGTTGCATCATTCTTCTCCCCATCATTTCACAGCTTGCCCTCTCTTTTTCCTTGTTTTGAGGCTTGTTGGGTATTTTCCCTCGTTGGATGTTCAATTCTTGTTTTCTATAGATCACTTATGCAGATCAATTATGAAGTGTTTATGAAAAATTCTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGC</genome_strand>
        <mrna_strand>TTTCTTCATGCTCTTCTCTCTCTCTCTCTATATATCCGTTTCTTACAATTTCTCTACTTGCTTCTACGAATTTCTCATGAAAATTTGAGCTTTTCACTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAGAGGAAACCCTAGTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCGAAGACTCGATTTTTTTATTGTGGGGTTGTTAAAAATTGAGCGAACAGAAGGATAATATGGAAAATACGGTACCTACGACTGTACAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAG...........................................................................................................................................ATGTCGAGAAGTGCTATCAGTCATGTGATCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613663" ref_strand="+" ref_description="SGN-E613663 [63441]">
      <seq>agcaactctctgtggagcttgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgcgagagatggttccatggaaaatgtgtgaagatcactccagctaaagctgagcatatcaagcagtacaagtgtcctagttgcagtagcaagagagctaaagtctaaaatttgtggcaagaacaattaagtggtgatgttggaaggtctaggagttttagctcaattatcaaatgtcaaaagttaaatgtttgctgatggaattgggatgtccatttcatgaacatttgctttctgttatcttgctttcggcttgttttttagattaaaagaaattgtgcctgttatcatcttgtgtttgaagatccattttcactttttacttttgtatttattatgaggaattccaaaacttttgtgataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="70249" stop="69254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69950" g_stop="69554" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="439"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E613663" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69950" e_stop="69554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATG------TC-----CATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTTATCATCTTGTGTTTGAAGATCCATTTTCACTTTTTACTTGTGTATTTATTATGA</genome_strand>
        <mrna_strand>AGCAACTCTCTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATCACTCCAGCTAAAGCTGAGCATATCAAGCAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAATTTGTGGCAAGAACAATTAAGTGGTGATGTTGGAAGGTCTAGGAGTTTTAGCTCAATTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTCATGAACATTTGCTTTCTGTTATCTTGCTTTCGGCTTGTTTTTTAGA-TTAAAAGAAATTGTGCCTGTTATCATCTTGTGTTTGAAGATCCATTTTCACTTTTTACTTTTGTATTTATTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712579" ref_strand="+" ref_description="SGN-E712579 [FB05BA02]">
      <seq>cggtagccagagtcccaactcaaggcagtaaaggtgtctccacctaaaatggagaacgacagtggtgaggaggaagaagaagaagaagaggatgaacaaggcgcaactctgtgtggagcttgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgcgagagatggttccatggaaaatgtgtgaagattactccagctaaagctgagcatatcaaacagtacaagtgtcctagttgcagtagcaagagagctaaagtctaaaaattgcggcaaggacaattaagtggtgatgttggaaggtgtaggagttttagctcagttatcaaatgtcaaaagttaaatgtttgctgatggaattgggatgtccatttgctttctgttatcttgctttcggattgcgttttagattttaaagaaattgtgcctgttatcatcttgtgtttgaagatccattttcactttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="70351" stop="69272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70051" g_stop="69563" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E712579" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70051" e_stop="69563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAGCCAGAGTCCCAACTCAAGGCAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTTATCATCTTGTGTTTGAAGATCCATTTTCACTTTTTACTTGTGTAT</genome_strand>
        <mrna_strand>CGGTAGCCAGAGTCCCAACTCAAGGCAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTTATCATCTTGTGTTTGAAGATCCATTTTCACTTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396492" ref_strand="+" ref_description="SGN-E396492 [TUS-16-A20](-)">
      <seq>aaagctgagcatatcaaacagtacaagtgtcctagttgcagtagcaagagagctaaagtctaaaaattgcggcaaggacaattaagtggtgatgttggaaggtgtaggagttttagctcagttatcaaatgtcaaaagttaaatgtttgctgatggaattgggatgtccatttgctttctgttatcttgctttcggattgcgttttagattttaaggaaattgtgcctgttatcatcttgtgtttgaagatccattttcactttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="70138" stop="69275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69838" g_stop="69575" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="265" polyA_stop="274"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E396492" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69838" e_stop="69575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTTATCATCTTGTGTTTGAAGATCCATTTTCACTTT</genome_strand>
        <mrna_strand>AAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAGGAAATTGTGCCTGTTATCATCTTGTGTTTGAAGATCCATTTTCACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370083" ref_strand="+" ref_description="SGN-E370083 [TUS-26-D6](-)">
      <seq>aaagacagtaaaggtgtctccacctaaaatggagaacgacagtggtgaggaggaagaagaagaagaagaggatgaacaaggcgcaactctgtgtggagcttgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgcgagagatggttccatggaaaatgtgtgaagattactccagctaaagctgagcatatcaaacagtacaagtgtcctagttgcagtagcaagagagctaaagtctaaaaattgcggcaaggacaattaagtggtgatgttggaaggtgtaggagttttagctcagttatcaaatgtcaaaagttaaatgttttctgatggaattgggatgtccatttgctttctgttatcttgctttcggattgcgttttagattttaaagaaattgtgcctgttatcatcttgtgtttagagatccattttcaaaaatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="70330" stop="69279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70031" g_stop="69579" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="475"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E370083" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70031" e_stop="69579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGCAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTTATCATCTTGTGTTTGAAGATCCATTTTCA</genome_strand>
        <mrna_strand>AAAGACAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTTCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTTATCATCTTGTGTTTAGAGATCCATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746264" ref_strand="+" ref_description="SGN-E746264 [GI|47104790]">
      <seq>taccaaaaaccctttccctctcttcccgctgtttgttctctttctctctctacaatctctgccactttacttcttacaatttctaagctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttgttagaaattgcgtgtagacaaggttattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctcccggtggaagaggtgcctccagaacttcctgaaccagcattgggcataaattttgcacgtgatggaatgcaagaaaaagactggttatcacttgttgctgttcacagtgattcgtggctgctttctgttgcattttactttggcgcaaggtttgggttcggcaagagtgataggaagaggcttttccaaatgataaatgatctcccaacagtgtttgaagttgttactggagctgctaaacaaacacgtgatgctcctcacaacaatagcaacaaaagcaaatcaagtggaaagcctcggcagccagagtcccaactcaaggcagtaaaggtgtctccacctaaaatggagaacgacagtggtgaggaggaagaagaagaagaagaggatgaacaaggcgcaactctgtgtggagcttgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgcgagagatggttccatggaaaatgtgtgaagattactccagctaaagctgagcatatcaaacagtacaagtgtcctagttgcagtagcaagagagctaaagtctaaaaattgcggcaaggacaattaagtggtgatgttggaaggtgtaggagttttagctcagttatcaaatgtcaaaagttaaatgtttgctgatggaattgggatgtccatttgctttctgttatcttgctttcggattgcgttttagattttaaagaaattgtgcctgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75276" stop="69307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74976" g_stop="74605" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="406" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72309" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="635" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72308" i_stop="70276" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70275" g_stop="70155" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="756" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70154" i_stop="70055" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70054" g_stop="69608" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="1203" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1204" polyA_stop="1222"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E746264" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1202</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74976" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72309"/>
          <exon e_start="70275" e_stop="70155"/>
          <exon e_start="70054" e_stop="69608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAAAAACCCTTTCCCTCTCTTCCCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAGGTAAAATAACATCCACCCTCTCTTTTGAACTCTGAATTTGCAGTGTCTGTTAGGTAATATCTGCTCGCGCTTCTTTTTATCTTCTGGGGTTTATCTAGTGGCATATGTTGAGCTATGTCTTTCCTATAGCTGTTCCCCTCATGCTTCTTAAAATTCATCTCCCCAAGCATTTAGTGCATCCAGAACTTGTATGCTCCATCGATCAATTTTAGGGAGATAAGCTTCTGTGATTGCTGTCCGTTTTTTTTCCATAGCTGAGATAATTTTCCATGAAAAATCACTGAAGAAATTTAGTCAACAATCATGTATGAACATCTCTTTCCCAGAACTGTACTTTCTAACCCATACAACAGTTGGAGCTCCCTTTTTTCCCTTTGATCTTTGTTGAAGAAACAGTTACATGTTTCGTTTTTGTTGTCTTCTTGCTTACAATGTAGTGTTTGACCTGTTTTTTGCCTCTCATTGAGGTATGTTAACCCAGCAATCAATCAATCATGAACTAGGCTAATCTCGAATAAGGTTGGTTTGATTCCCTTATCTGCTTCATCTCTACAAGATTCAGTATTTAGGATTCATCATAATTAGACGAGTTTATGCTTGCTGTTAATCTACTCCAATCCTTCTGCTTCATCGACATATTAAGGCTCTTAATAGACAGTTGTGGCTGATTGATGGTGTTGAGTTTAAAACATCTTTTTCATTCTAAGGATATACTTTATATACAAAAGCACCAAGAAGCTGCAAATATATTGAGAGAGTTTATAACAGTAAAACTCTGAAGTTTAAGTATTAGCTGTAATTAGGATTACTAAGTTATAACTCTGGAGTGGAGAATTTCTAGCAGTGAGATTATTTGGGCAATATATAGAAGTCCACCTTCATCCAAAGTTCATTTAGTCGGTGTTTCATATTTTCTGTGTCATGAAAACATGATAAGACTTACCGATAAGCTGTAGTTGCTTTGGAGGTTGGTAGCTGCATCAAGGGAATTTGGAAAATGATACCTGCAGCCACTTTTTGGAGTATCTGGAATGATAGTAATAGAAGATGCTTTTAATGTAAAAGCTAGTTGCCTCATGTTTTTGTATAGTTGGTTTATTTATCCCTCTCGATTCCCGGCTCCTTTCTAAGCTTTGTCAGCTCCCCGAATCTTAACTAGCAATGTGAAGGAGCTACTGTATTTTTGTAACTATTATGCATCTACTTTATGTCTGCGATATACTAATAACTTCGTTATAAAAAAAGATGTCTTATTACTTTGTCTTGGTGAGCATACTGATGACTTGTTGCAATGAGATTCCAGACATCTTCCATTTTTAGGTTTCTATAGAATTTGTCTATCATTACCTTATAAATATGGAATATAGATTTACAAAGCCTTTTGTCCGTTCACTATTCTGGAGAAGGTTATTAGGTCCTAGTTATTAGACAAGCAGATTCATTTGCATAGTGACATATTTTGTGGGCATCATTAGATCAGATAATGCTTGGTTAGAAGCGAGGATGCTTGGCATGTTGAGATGCTTACCTTCAGCCGGTGTGTTGGATGTAACATCATAGAATAAAATAGTATGTTGAGTGAATAGTAGGAGTTTCAGACATGTTGAGAGATCATCACTGTTATTGTTGGCTGTAGCATCATTGAATATGTTAGTGCTTAGTTGAATAGGCAAAGGATGTCTGACATGTCAGGACAGCCCAAATGCTGTATAATATTTGGAGGCTGGAGCAACTTGTGAGTAACAGGTCTACTTTTTGTATCTGCTGCTATTGTAGGTTAGAGAATCTTCTGGATGTGAAACTATGGCTGTAATCATTATAAGCTGGATTTTATATTGGGAAACTGGTGCATGTGATCCACGATCATGTGTACATGTCCAGAAATGTTAAACTTAAATCTCTTATATTTGTCTAGTGTATGGATAGTTTGTCTAACTAGTCCAATGTCATAAATGTGTCTTCCATTGGTTAAATGGTTATCTGAGATATATTTAGAGAGAATAATTGTTTTATTTTGGAAATCATGTATACAGGAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAGGTTCTCATATACTGGACCTAACATGTAGAACTACTGTATATATATATATATTTTTCATTTTGTTTGAGCATATGTTTTCTGCATCATCTTTAATTTGCAGCCTCGGCAGCCAGAGTCCCAACTCAAGGCAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTT</genome_strand>
        <mrna_strand>TACCAAAAACCCTTTCCCTCTCTTCCCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAG....................................................................................................CCTCGGCAGCCAGAGTCCCAACTCAAGGCAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218582" ref_strand="+" ref_description="SGN-E218582 [cLEL-18-H7](-)">
      <seq>gtaaaggtgtctccacctaaaatggagaacgacagtggtgaggaggaagaagaagaagaagaggatgaccaaggcgcaactctgtgtggagcttgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgcgagagatggttccatggaaaatgtgtgaagattactccagctaaagctgagcatatcaaacagtacaagtgtcctagttgcagtagcaagagagctaaagtctaaaaattgcggcaaggacaattaagtggtgatgttggaaggtgtaggagttttagctcagttatcaaatgtcaaaagttaaatgtttgctgatggaattgggatgtccatttgctttctgttatcttgctttcggattgcgttttagattttaaagaaattgtgcctgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="70324" stop="69307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70024" g_stop="69608" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="434"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E218582" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70024" e_stop="69608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTT</genome_strand>
        <mrna_strand>GTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGACCAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225665" ref_strand="+" ref_description="SGN-E225665 [cLEL-17-M22](-)">
      <seq>gtaaaggtgtctccacctaaaatggagaacgacagtggtgaggagcaagaagaagaagaagaggatgaacaaggcgcaactctgtgtggagcttgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgcgagagatggttccatggaaaatgtgtgaagattactccagctaaagctgagcatatcaaacagtacaagtgtcctagttgcagtagcaagagagctaaagtctaaaaattgcggcaaggacaattaagtggtgatgttggaaggtgtaggagttttagctcagttatcaaatgtcaaaagttaaatgtttgctgatggaattgggatgtccatttgctttctgttatcttgctttcggattgcgttttagattttaaagaaattgtgcctgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="70324" stop="69307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70024" g_stop="69608" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="434"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E225665" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70024" e_stop="69608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTT</genome_strand>
        <mrna_strand>GTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGCAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225380" ref_strand="+" ref_description="SGN-E225380 [cLEL-17-F4](-)">
      <seq>aggaagaagaagaagaagaggatgaacaaggcgcaactctgtgtggagcttgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgcgagagatggttccatggaaaatgtgtgaagattactccagctaaagctgagcatatcaaacagtacaagtgtcctagttgcagtagcaagagagctaaagtctaaaaattgcggcaaggacaattaagtggtgatgttggaaggtgtaggagttttagctcagttatcaaatgtcaaaagttaaatgtttgctgatggaattgggatgtccatttgctttctgttatcttgctttcggattgcgttttagattttaaagaaattgtgcctgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="70281" stop="69307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69981" g_stop="69608" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="391"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E225380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69981" e_stop="69608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTT</genome_strand>
        <mrna_strand>AGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225579" ref_strand="+" ref_description="SGN-E225579 [cLEL-17-F16](-)">
      <seq>aacaaggcgcaactatgtgtggagcttgtggtgatgattatgcgactgatgaattctggatttcctgtgataattgcgagacatggttccatggaaaatgtgtgaagattactccagctaaagctgagcatatcaatcagtacaagtgtcctagttgcagtagcaagacagctaaagtctaaaaattgcggcaaggacaattaagtggtgatgttggaaggtgtaggagttttagctcagttatcaaatgtccaaagttaaatgtttgctgatggaattgggatgtccattagcattctgttatcttgctttcggattgcgttttagattttaaagaaattgtgcctgttaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="70257" stop="69307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69957" g_stop="69608" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="366"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E225579" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69957" e_stop="69608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTT</genome_strand>
        <mrna_strand>AACAAGGCGCAACTATGTGTGGAGCTTGTGGTGATGATTATGCGACTGATGAATTCTGGATTTCCTGTGATAATTGCGAGACATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAATCAGTACAAGTGTCCTAGTTGCAGTAGCAAGACAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCCAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTAGCATTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398429" ref_strand="-" ref_description="SGN-E398429 [TUS-43-M9]">
      <seq>ctttctgttgcattttactttggcgcaaggtttgggttcggcaagagtgataggaagaggcttttccaaatgataaatgatctcccaacagtgtttgaagttgttactggagctgctaaacaaacacgtgatgctcctcacaacaatagcaacaaaagcaaatcaagtggaaagcctcggcagccagagtcccaactcaaggcagtaaaggtgtctccacctaaaatggagaacgacagtggtgaggaggaagaagaagaagaagaggatgaacaaggcgcaactctgtgtggagcttgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgcgagagatggttccatggaaaatgtgtgaagattactccagctaaagctgagcatatcaaacagtacaagtgtcctagttgcagtagcaagagagctaaagtctaaaaattgcggcaaggacaattaagtggtgatgttggaaggtgtaggagttttagctcagttatcaaatgtcaaaagttaaatgtttgctgatggaattgggatgtccatttgctttctgttatcttgctttcggattgcgttttagattttaaagaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="72661" stop="69316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72361" g_stop="72309" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72308" i_stop="70276" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70275" g_stop="70155" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="174" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70154" i_stop="70055" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70054" g_stop="69616" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="613" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E398429" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398429" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72361" e_stop="72309"/>
          <exon e_start="70275" e_stop="70155"/>
          <exon e_start="70054" e_stop="69616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAGGTAAAATAACATCCACCCTCTCTTTTGAACTCTGAATTTGCAGTGTCTGTTAGGTAATATCTGCTCGCGCTTCTTTTTATCTTCTGGGGTTTATCTAGTGGCATATGTTGAGCTATGTCTTTCCTATAGCTGTTCCCCTCATGCTTCTTAAAATTCATCTCCCCAAGCATTTAGTGCATCCAGAACTTGTATGCTCCATCGATCAATTTTAGGGAGATAAGCTTCTGTGATTGCTGTCCGTTTTTTTTCCATAGCTGAGATAATTTTCCATGAAAAATCACTGAAGAAATTTAGTCAACAATCATGTATGAACATCTCTTTCCCAGAACTGTACTTTCTAACCCATACAACAGTTGGAGCTCCCTTTTTTCCCTTTGATCTTTGTTGAAGAAACAGTTACATGTTTCGTTTTTGTTGTCTTCTTGCTTACAATGTAGTGTTTGACCTGTTTTTTGCCTCTCATTGAGGTATGTTAACCCAGCAATCAATCAATCATGAACTAGGCTAATCTCGAATAAGGTTGGTTTGATTCCCTTATCTGCTTCATCTCTACAAGATTCAGTATTTAGGATTCATCATAATTAGACGAGTTTATGCTTGCTGTTAATCTACTCCAATCCTTCTGCTTCATCGACATATTAAGGCTCTTAATAGACAGTTGTGGCTGATTGATGGTGTTGAGTTTAAAACATCTTTTTCATTCTAAGGATATACTTTATATACAAAAGCACCAAGAAGCTGCAAATATATTGAGAGAGTTTATAACAGTAAAACTCTGAAGTTTAAGTATTAGCTGTAATTAGGATTACTAAGTTATAACTCTGGAGTGGAGAATTTCTAGCAGTGAGATTATTTGGGCAATATATAGAAGTCCACCTTCATCCAAAGTTCATTTAGTCGGTGTTTCATATTTTCTGTGTCATGAAAACATGATAAGACTTACCGATAAGCTGTAGTTGCTTTGGAGGTTGGTAGCTGCATCAAGGGAATTTGGAAAATGATACCTGCAGCCACTTTTTGGAGTATCTGGAATGATAGTAATAGAAGATGCTTTTAATGTAAAAGCTAGTTGCCTCATGTTTTTGTATAGTTGGTTTATTTATCCCTCTCGATTCCCGGCTCCTTTCTAAGCTTTGTCAGCTCCCCGAATCTTAACTAGCAATGTGAAGGAGCTACTGTATTTTTGTAACTATTATGCATCTACTTTATGTCTGCGATATACTAATAACTTCGTTATAAAAAAAGATGTCTTATTACTTTGTCTTGGTGAGCATACTGATGACTTGTTGCAATGAGATTCCAGACATCTTCCATTTTTAGGTTTCTATAGAATTTGTCTATCATTACCTTATAAATATGGAATATAGATTTACAAAGCCTTTTGTCCGTTCACTATTCTGGAGAAGGTTATTAGGTCCTAGTTATTAGACAAGCAGATTCATTTGCATAGTGACATATTTTGTGGGCATCATTAGATCAGATAATGCTTGGTTAGAAGCGAGGATGCTTGGCATGTTGAGATGCTTACCTTCAGCCGGTGTGTTGGATGTAACATCATAGAATAAAATAGTATGTTGAGTGAATAGTAGGAGTTTCAGACATGTTGAGAGATCATCACTGTTATTGTTGGCTGTAGCATCATTGAATATGTTAGTGCTTAGTTGAATAGGCAAAGGATGTCTGACATGTCAGGACAGCCCAAATGCTGTATAATATTTGGAGGCTGGAGCAACTTGTGAGTAACAGGTCTACTTTTTGTATCTGCTGCTATTGTAGGTTAGAGAATCTTCTGGATGTGAAACTATGGCTGTAATCATTATAAGCTGGATTTTATATTGGGAAACTGGTGCATGTGATCCACGATCATGTGTACATGTCCAGAAATGTTAAACTTAAATCTCTTATATTTGTCTAGTGTATGGATAGTTTGTCTAACTAGTCCAATGTCATAAATGTGTCTTCCATTGGTTAAATGGTTATCTGAGATATATTTAGAGAGAATAATTGTTTTATTTTGGAAATCATGTATACAGGAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAGGTTCTCATATACTGGACCTAACATGTAGAACTACTGTATATATATATATATTTTTCATTTTGTTTGAGCATATGTTTTCTGCATCATCTTTAATTTGCAGCCTCGGCAGCCAGAGTCCCAACTCAAGGCAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTG</genome_strand>
        <mrna_strand>CTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAG....................................................................................................CCTCGGCAGCCAGAGTCCCAACTCAAGGCAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201140" ref_strand="-" ref_description="SGN-E201140 [cLEC-10-O8]">
      <seq>cttttccaaatgataaatgatctcccaacagtgtttgaagttgttactggagctgctaaacaaacacgtgatgctcctcacaacaatagcaacaaaagcaaatcaagtggaaagcctcggcagccagagtcccaactcaaggcagtaaaggtgtctccacctaaaatggagaacgacagtggtgaggaggaagaagaagaagaagaggatgaacaaggcgcaactctgtgtggagcttgtggtgataattatgcgactgatgaattctggatttgctgtgatatttgcgagagatggttccatggaaaatgtgtgaagattactccagctaaagctgagcatatcaaacagtacaagtgtcctagttgcagtagcaagagagctaaagtctaaaaattgcggcaaggacaattaagtggtgatgttggaaggtgtaggagttttagctcagttatcaaatgtcaaaagttaaatgtttgctgatggaattgggatgtccatttgctttctgttatcttgctttcggattgcgttttagattttaaagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="70568" stop="69317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70268" g_stop="70155" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70154" i_stop="70055" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70054" g_stop="69617" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="552" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E201140" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201140" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70268" e_stop="70155"/>
          <exon e_start="70054" e_stop="69617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAGGTTCTCATATACTGGACCTAACATGTAGAACTACTGTATATATATATATATTTTTCATTTTGTTTGAGCATATGTTTTCTGCATCATCTTTAATTTGCAGCCTCGGCAGCCAGAGTCCCAACTCAAGGCAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATT</genome_strand>
        <mrna_strand>CTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAG....................................................................................................CCTCGGCAGCCAGAGTCCCAACTCAAGGCAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710588" ref_strand="+" ref_description="SGN-E710588 [FA55DE08]">
      <seq>ctatgctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttgttagaaattgcgtgtagacaaggttattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctcccggtggaagaggtgcctccagaacttcctgaaccagcattgggcataaattttgcacgtgatggaatgcaagaaaaagactggttatcacttgttgctgttcacagtgattcgtggctgctttctgttgcattttactttggcgcaaggtttgggttcggcaagagtgataggaagaggcttttccaaatgataaatgatctcccaacagtgtttgaagttgttactggagctgctaaacaaacacgtgatgctcctcacaacaatagcaacaaaagcaaatcaagtggaaagcctcggcagccagagtcccaactcaaggccccccaggtgtctccacctaaaatggagaacgacagtggtgaggaggaagaagaagaagaagaggatgaacaaggcgcaactctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75194" stop="69640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74894" g_stop="74605" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="324" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72533" i_length="1909">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72532" g_stop="72309" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="548" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72308" i_stop="70276" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70275" g_stop="70155" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="669" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70154" i_stop="70055" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70054" g_stop="69940" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="784" r_length="115" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E710588" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74894" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72532" e_stop="72309"/>
          <exon e_start="70275" e_stop="70155"/>
          <exon e_start="70054" e_stop="69940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAGGTAAAATAACATCCACCCTCTCTTTTGAACTCTGAATTTGCAGTGTCTGTTAGGTAATATCTGCTCGCGCTTCTTTTTATCTTCTGGGGTTTATCTAGTGGCATATGTTGAGCTATGTCTTTCCTATAGCTGTTCCCCTCATGCTTCTTAAAATTCATCTCCCCAAGCATTTAGTGCATCCAGAACTTGTATGCTCCATCGATCAATTTTAGGGAGATAAGCTTCTGTGATTGCTGTCCGTTTTTTTTCCATAGCTGAGATAATTTTCCATGAAAAATCACTGAAGAAATTTAGTCAACAATCATGTATGAACATCTCTTTCCCAGAACTGTACTTTCTAACCCATACAACAGTTGGAGCTCCCTTTTTTCCCTTTGATCTTTGTTGAAGAAACAGTTACATGTTTCGTTTTTGTTGTCTTCTTGCTTACAATGTAGTGTTTGACCTGTTTTTTGCCTCTCATTGAGGTATGTTAACCCAGCAATCAATCAATCATGAACTAGGCTAATCTCGAATAAGGTTGGTTTGATTCCCTTATCTGCTTCATCTCTACAAGATTCAGTATTTAGGATTCATCATAATTAGACGAGTTTATGCTTGCTGTTAATCTACTCCAATCCTTCTGCTTCATCGACATATTAAGGCTCTTAATAGACAGTTGTGGCTGATTGATGGTGTTGAGTTTAAAACATCTTTTTCATTCTAAGGATATACTTTATATACAAAAGCACCAAGAAGCTGCAAATATATTGAGAGAGTTTATAACAGTAAAACTCTGAAGTTTAAGTATTAGCTGTAATTAGGATTACTAAGTTATAACTCTGGAGTGGAGAATTTCTAGCAGTGAGATTATTTGGGCAATATATAGAAGTCCACCTTCATCCAAAGTTCATTTAGTCGGTGTTTCATATTTTCTGTGTCATGAAAACATGATAAGACTTACCGATAAGCTGTAGTTGCTTTGGAGGTTGGTAGCTGCATCAAGGGAATTTGGAAAATGATACCTGCAGCCACTTTTTGGAGTATCTGGAATGATAGTAATAGAAGATGCTTTTAATGTAAAAGCTAGTTGCCTCATGTTTTTGTATAGTTGGTTTATTTATCCCTCTCGATTCCCGGCTCCTTTCTAAGCTTTGTCAGCTCCCCGAATCTTAACTAGCAATGTGAAGGAGCTACTGTATTTTTGTAACTATTATGCATCTACTTTATGTCTGCGATATACTAATAACTTCGTTATAAAAAAAGATGTCTTATTACTTTGTCTTGGTGAGCATACTGATGACTTGTTGCAATGAGATTCCAGACATCTTCCATTTTTAGGTTTCTATAGAATTTGTCTATCATTACCTTATAAATATGGAATATAGATTTACAAAGCCTTTTGTCCGTTCACTATTCTGGAGAAGGTTATTAGGTCCTAGTTATTAGACAAGCAGATTCATTTGCATAGTGACATATTTTGTGGGCATCATTAGATCAGATAATGCTTGGTTAGAAGCGAGGATGCTTGGCATGTTGAGATGCTTACCTTCAGCCGGTGTGTTGGATGTAACATCATAGAATAAAATAGTATGTTGAGTGAATAGTAGGAGTTTCAGACATGTTGAGAGATCATCACTGTTATTGTTGGCTGTAGCATCATTGAATATGTTAGTGCTTAGTTGAATAGGCAAAGGATGTCTGACATGTCAGGACAGCCCAAATGCTGTATAATATTTGGAGGCTGGAGCAACTTGTGAGTAACAGGTCTACTTTTTGTATCTGCTGCTATTGTAGGTTAGAGAATCTTCTGGATGTGAAACTATGGCTGTAATCATTATAAGCTGGATTTTATATTGGGAAACTGGTGCATGTGATCCACGATCATGTGTACATGTCCAGAAATGTTAAACTTAAATCTCTTATATTTGTCTAGTGTATGGATAGTTTGTCTAACTAGTCCAATGTCATAAATGTGTCTTCCATTGGTTAAATGGTTATCTGAGATATATTTAGAGAGAATAATTGTTTTATTTTGGAAATCATGTATACAGGAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAGGTTCTCATATACTGGACCTAACATGTAGAACTACTGTATATATATATATATTTTTCATTTTGTTTGAGCATATGTTTTCTGCATCATCTTTAATTTGCAGCCTCGGCAGCCAGAGTCCCAACTCAAGGCAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGT</genome_strand>
        <mrna_strand>CTATGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAG....................................................................................................CCTCGGCAGCCAGAGTCCCAACTCAAGGCCCCCCAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348003" ref_strand="+" ref_description="SGN-E348003 [cTOF-31-G7]">
      <seq>tctctacaatctctgccactttacttcttacaatttctaagctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttgttagaaattgcgtgtagacaaggttattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctcccggtggaagaggtgcctccagaacttcctgaaccagcattgggcataaattttgcacgtgatggaatgcaagaaaaagactggttatcacttgttgctgttcacagtgattcgtggctgctttctgttgcattttactttggcgcaagggtttgggttcggcaagagtgataggaagaggcttttccaatgataaatgatctcccaacagtgtttgaaagttgttactggagctgctaaacaaacacgtgatgctcctcacaacaatagcaacaaaagcaaatcaagtggaaagcctcggcagccagagtcccaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75230" stop="69730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74930" g_stop="74605" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="360" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72309" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="590" r_length="230" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72308" i_stop="70276" i_length="2033">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70275" g_stop="70155" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="711" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70154" i_stop="70055" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70054" g_stop="70030" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="736" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E348003" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74930" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72309"/>
          <exon e_start="70275" e_stop="70155"/>
          <exon e_start="70054" e_stop="70030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAA-GGTTTGGGTTCGGCAAGAGTGATAGGTAAAATAACATCCACCCTCTCTTTTGAACTCTGAATTTGCAGTGTCTGTTAGGTAATATCTGCTCGCGCTTCTTTTTATCTTCTGGGGTTTATCTAGTGGCATATGTTGAGCTATGTCTTTCCTATAGCTGTTCCCCTCATGCTTCTTAAAATTCATCTCCCCAAGCATTTAGTGCATCCAGAACTTGTATGCTCCATCGATCAATTTTAGGGAGATAAGCTTCTGTGATTGCTGTCCGTTTTTTTTCCATAGCTGAGATAATTTTCCATGAAAAATCACTGAAGAAATTTAGTCAACAATCATGTATGAACATCTCTTTCCCAGAACTGTACTTTCTAACCCATACAACAGTTGGAGCTCCCTTTTTTCCCTTTGATCTTTGTTGAAGAAACAGTTACATGTTTCGTTTTTGTTGTCTTCTTGCTTACAATGTAGTGTTTGACCTGTTTTTTGCCTCTCATTGAGGTATGTTAACCCAGCAATCAATCAATCATGAACTAGGCTAATCTCGAATAAGGTTGGTTTGATTCCCTTATCTGCTTCATCTCTACAAGATTCAGTATTTAGGATTCATCATAATTAGACGAGTTTATGCTTGCTGTTAATCTACTCCAATCCTTCTGCTTCATCGACATATTAAGGCTCTTAATAGACAGTTGTGGCTGATTGATGGTGTTGAGTTTAAAACATCTTTTTCATTCTAAGGATATACTTTATATACAAAAGCACCAAGAAGCTGCAAATATATTGAGAGAGTTTATAACAGTAAAACTCTGAAGTTTAAGTATTAGCTGTAATTAGGATTACTAAGTTATAACTCTGGAGTGGAGAATTTCTAGCAGTGAGATTATTTGGGCAATATATAGAAGTCCACCTTCATCCAAAGTTCATTTAGTCGGTGTTTCATATTTTCTGTGTCATGAAAACATGATAAGACTTACCGATAAGCTGTAGTTGCTTTGGAGGTTGGTAGCTGCATCAAGGGAATTTGGAAAATGATACCTGCAGCCACTTTTTGGAGTATCTGGAATGATAGTAATAGAAGATGCTTTTAATGTAAAAGCTAGTTGCCTCATGTTTTTGTATAGTTGGTTTATTTATCCCTCTCGATTCCCGGCTCCTTTCTAAGCTTTGTCAGCTCCCCGAATCTTAACTAGCAATGTGAAGGAGCTACTGTATTTTTGTAACTATTATGCATCTACTTTATGTCTGCGATATACTAATAACTTCGTTATAAAAAAAGATGTCTTATTACTTTGTCTTGGTGAGCATACTGATGACTTGTTGCAATGAGATTCCAGACATCTTCCATTTTTAGGTTTCTATAGAATTTGTCTATCATTACCTTATAAATATGGAATATAGATTTACAAAGCCTTTTGTCCGTTCACTATTCTGGAGAAGGTTATTAGGTCCTAGTTATTAGACAAGCAGATTCATTTGCATAGTGACATATTTTGTGGGCATCATTAGATCAGATAATGCTTGGTTAGAAGCGAGGATGCTTGGCATGTTGAGATGCTTACCTTCAGCCGGTGTGTTGGATGTAACATCATAGAATAAAATAGTATGTTGAGTGAATAGTAGGAGTTTCAGACATGTTGAGAGATCATCACTGTTATTGTTGGCTGTAGCATCATTGAATATGTTAGTGCTTAGTTGAATAGGCAAAGGATGTCTGACATGTCAGGACAGCCCAAATGCTGTATAATATTTGGAGGCTGGAGCAACTTGTGAGTAACAGGTCTACTTTTTGTATCTGCTGCTATTGTAGGTTAGAGAATCTTCTGGATGTGAAACTATGGCTGTAATCATTATAAGCTGGATTTTATATTGGGAAACTGGTGCATGTGATCCACGATCATGTGTACATGTCCAGAAATGTTAAACTTAAATCTCTTATATTTGTCTAGTGTATGGATAGTTTGTCTAACTAGTCCAATGTCATAAATGTGTCTTCCATTGGTTAAATGGTTATCTGAGATATATTTAGAGAGAATAATTGTTTTATTTTGGAAATCATGTATACAGGAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTG-AAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAGGTTCTCATATACTGGACCTAACATGTAGAACTACTGTATATATATATATATTTTTCATTTTGTTTGAGCATATGTTTTCTGCATCATCTTTAATTTGCAGCCTCGGCAGCCAGAGTCCCAACTCA</genome_strand>
        <mrna_strand>TCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGGTTTGGGTTCGGCAAGAGTGATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCC-AATGATAAATGATCTCCCAACAGTGTTTGAAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAG....................................................................................................CCTCGGCAGCCAGAGTCCCAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612792" ref_strand="+" ref_description="SGN-E612792 [62559]">
      <seq>ctgttttggtctcattctcctctttctctccctacaatttctgcaactttacttcttacaattttctcataaaaatctaagctttttctttatgaaatcttcattttcacttcacatagcaaactaattttcaaattttgagcaacatgaagtggaaactttagttcttggggaaaaccctaatttatttcaacccacttcttgttttttttttttcaaagactcaatttttttcttcttgtggggttgttagaaattgcgtgtagacaagggtagtatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttaattaaagcccttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctcccggtggaagaggtccctccagaacttccggaaccagcattgggcataaattttgcacgtgatggaatgcaagaaaaagactggttatcacttgttgctgttcacagtgattcatggctgctttctgttgcattttactttggtgcaaggtttgggttcggcaagagtgaaaggaagaggcttttccaaatgataaatgatctcccaacagtgttcgaagttgttaccggagctgctaaacagacacgtgatccccctcagaacaatagcaacaaaagcaaatcaggtgggaaagcctcgacagccagagtcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75227" stop="62342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74899" g_stop="74605" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="365" r_length="294" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="398" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72309" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="627" r_length="229" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72308" i_stop="70276" i_length="2033">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70275" g_stop="70155" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="749" r_length="122" r_score="0.926"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70154" i_stop="70055" i_length="100">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70054" g_stop="70034" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="770" r_length="21" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E612792" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74899" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72309"/>
          <exon e_start="70275" e_stop="70155"/>
          <exon e_start="70054" e_stop="70034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTT-TTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAGGTAAAATAACATCCACCCTCTCTTTTGAACTCTGAATTTGCAGTGTCTGTTAGGTAATATCTGCTCGCGCTTCTTTTTATCTTCTGGGGTTTATCTAGTGGCATATGTTGAGCTATGTCTTTCCTATAGCTGTTCCCCTCATGCTTCTTAAAATTCATCTCCCCAAGCATTTAGTGCATCCAGAACTTGTATGCTCCATCGATCAATTTTAGGGAGATAAGCTTCTGTGATTGCTGTCCGTTTTTTTTCCATAGCTGAGATAATTTTCCATGAAAAATCACTGAAGAAATTTAGTCAACAATCATGTATGAACATCTCTTTCCCAGAACTGTACTTTCTAACCCATACAACAGTTGGAGCTCCCTTTTTTCCCTTTGATCTTTGTTGAAGAAACAGTTACATGTTTCGTTTTTGTTGTCTTCTTGCTTACAATGTAGTGTTTGACCTGTTTTTTGCCTCTCATTGAGGTATGTTAACCCAGCAATCAATCAATCATGAACTAGGCTAATCTCGAATAAGGTTGGTTTGATTCCCTTATCTGCTTCATCTCTACAAGATTCAGTATTTAGGATTCATCATAATTAGACGAGTTTATGCTTGCTGTTAATCTACTCCAATCCTTCTGCTTCATCGACATATTAAGGCTCTTAATAGACAGTTGTGGCTGATTGATGGTGTTGAGTTTAAAACATCTTTTTCATTCTAAGGATATACTTTATATACAAAAGCACCAAGAAGCTGCAAATATATTGAGAGAGTTTATAACAGTAAAACTCTGAAGTTTAAGTATTAGCTGTAATTAGGATTACTAAGTTATAACTCTGGAGTGGAGAATTTCTAGCAGTGAGATTATTTGGGCAATATATAGAAGTCCACCTTCATCCAAAGTTCATTTAGTCGGTGTTTCATATTTTCTGTGTCATGAAAACATGATAAGACTTACCGATAAGCTGTAGTTGCTTTGGAGGTTGGTAGCTGCATCAAGGGAATTTGGAAAATGATACCTGCAGCCACTTTTTGGAGTATCTGGAATGATAGTAATAGAAGATGCTTTTAATGTAAAAGCTAGTTGCCTCATGTTTTTGTATAGTTGGTTTATTTATCCCTCTCGATTCCCGGCTCCTTTCTAAGCTTTGTCAGCTCCCCGAATCTTAACTAGCAATGTGAAGGAGCTACTGTATTTTTGTAACTATTATGCATCTACTTTATGTCTGCGATATACTAATAACTTCGTTATAAAAAAAGATGTCTTATTACTTTGTCTTGGTGAGCATACTGATGACTTGTTGCAATGAGATTCCAGACATCTTCCATTTTTAGGTTTCTATAGAATTTGTCTATCATTACCTTATAAATATGGAATATAGATTTACAAAGCCTTTTGTCCGTTCACTATTCTGGAGAAGGTTATTAGGTCCTAGTTATTAGACAAGCAGATTCATTTGCATAGTGACATATTTTGTGGGCATCATTAGATCAGATAATGCTTGGTTAGAAGCGAGGATGCTTGGCATGTTGAGATGCTTACCTTCAGCCGGTGTGTTGGATGTAACATCATAGAATAAAATAGTATGTTGAGTGAATAGTAGGAGTTTCAGACATGTTGAGAGATCATCACTGTTATTGTTGGCTGTAGCATCATTGAATATGTTAGTGCTTAGTTGAATAGGCAAAGGATGTCTGACATGTCAGGACAGCCCAAATGCTGTATAATATTTGGAGGCTGGAGCAACTTGTGAGTAACAGGTCTACTTTTTGTATCTGCTGCTATTGTAGGTTAGAGAATCTTCTGGATGTGAAACTATGGCTGTAATCATTATAAGCTGGATTTTATATTGGGAAACTGGTGCATGTGATCCACGATCATGTGTACATGTCCAGAAATGTTAAACTTAAATCTCTTATATTTGTCTAGTGTATGGATAGTTTGTCTAACTAGTCCAATGTCATAAATGTGTCTTCCATTGGTTAAATGGTTATCTGAGATATATTTAGAGAGAATAATTGTTTTATTTTGGAAATCATGTATACAGGAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGT-GGAAAGGTTCTCATATACTGGACCTAACATGTAGAACTACTGTATATATATATATATTTTTCATTTTGTTTGAGCATATGTTTTCTGCATCATCTTTAATTTGCAGCCTCGGCAGCCAGAGTCCCAA</genome_strand>
        <mrna_strand>AAAATCTAAGCTTTTTCTTTATGAAATCTTCATTTTCACTTCACATAGCAAACTAATTTTCAAATTTTGAGCAACATGAAGTGGAAACTTTAGTTCTT-GGGGAAAACCCTAATTTATTTCAACCCACTTCTTGTTTTTTTT-TTTT-CAAAGACTCAATTTTTTTCTTCTTGTGGGGTTGTTAGAAATTGCGTGTAGACAAGGGTAGTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTAATTAAAGCCCTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTCCCTCCAGAACTTCCGGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCATGGCTGCTTTCTGTTGCATTTTACTTTGGTGCAAGGTTTGGGTTCGGCAAGAGTGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTCGAAGTTGTTACCGGAGCTGCTAAACAGACACGTGATCCCCCTCAGAACAATAGCAACAAAAGCAAATCAGGTGGGAAAG....................................................................................................CCTCGACAGCCAGAGTCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260791" ref_strand="+" ref_description="SGN-E260791 [cLEG-55-M16]">
      <seq>ccgctgtttgttctctttctctctctacaatctctgccactttacttcttacaatttctaagctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttgttagaaattgcgtgtagacaaggttattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctcccggtggaagaggtgcctccagaacttcctgaaccagcattgggcataaattttgcacgtgatggaatgcaagaaaaagactggttatcacttgttgctgttcacagtgattcgtggctgctttctgttgcattttactttggcgcaaggtttgggttcggcaagagtgataggaagaggcttttccaaatgataaatgatctcccaacagtgtttgaagttgttactggagctgctaaacaaacacgtgatgctcctcacaacaatagcaacaaaagcaaatcaagtggaaagcctcggcagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75251" stop="69851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74951" g_stop="74605" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="381" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72309" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="610" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72308" i_stop="70276" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70275" g_stop="70155" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="731" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70154" i_stop="70055" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70054" g_stop="70044" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="742" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E260791" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74951" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72309"/>
          <exon e_start="70275" e_stop="70155"/>
          <exon e_start="70054" e_stop="70044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAGGTAAAATAACATCCACCCTCTCTTTTGAACTCTGAATTTGCAGTGTCTGTTAGGTAATATCTGCTCGCGCTTCTTTTTATCTTCTGGGGTTTATCTAGTGGCATATGTTGAGCTATGTCTTTCCTATAGCTGTTCCCCTCATGCTTCTTAAAATTCATCTCCCCAAGCATTTAGTGCATCCAGAACTTGTATGCTCCATCGATCAATTTTAGGGAGATAAGCTTCTGTGATTGCTGTCCGTTTTTTTTCCATAGCTGAGATAATTTTCCATGAAAAATCACTGAAGAAATTTAGTCAACAATCATGTATGAACATCTCTTTCCCAGAACTGTACTTTCTAACCCATACAACAGTTGGAGCTCCCTTTTTTCCCTTTGATCTTTGTTGAAGAAACAGTTACATGTTTCGTTTTTGTTGTCTTCTTGCTTACAATGTAGTGTTTGACCTGTTTTTTGCCTCTCATTGAGGTATGTTAACCCAGCAATCAATCAATCATGAACTAGGCTAATCTCGAATAAGGTTGGTTTGATTCCCTTATCTGCTTCATCTCTACAAGATTCAGTATTTAGGATTCATCATAATTAGACGAGTTTATGCTTGCTGTTAATCTACTCCAATCCTTCTGCTTCATCGACATATTAAGGCTCTTAATAGACAGTTGTGGCTGATTGATGGTGTTGAGTTTAAAACATCTTTTTCATTCTAAGGATATACTTTATATACAAAAGCACCAAGAAGCTGCAAATATATTGAGAGAGTTTATAACAGTAAAACTCTGAAGTTTAAGTATTAGCTGTAATTAGGATTACTAAGTTATAACTCTGGAGTGGAGAATTTCTAGCAGTGAGATTATTTGGGCAATATATAGAAGTCCACCTTCATCCAAAGTTCATTTAGTCGGTGTTTCATATTTTCTGTGTCATGAAAACATGATAAGACTTACCGATAAGCTGTAGTTGCTTTGGAGGTTGGTAGCTGCATCAAGGGAATTTGGAAAATGATACCTGCAGCCACTTTTTGGAGTATCTGGAATGATAGTAATAGAAGATGCTTTTAATGTAAAAGCTAGTTGCCTCATGTTTTTGTATAGTTGGTTTATTTATCCCTCTCGATTCCCGGCTCCTTTCTAAGCTTTGTCAGCTCCCCGAATCTTAACTAGCAATGTGAAGGAGCTACTGTATTTTTGTAACTATTATGCATCTACTTTATGTCTGCGATATACTAATAACTTCGTTATAAAAAAAGATGTCTTATTACTTTGTCTTGGTGAGCATACTGATGACTTGTTGCAATGAGATTCCAGACATCTTCCATTTTTAGGTTTCTATAGAATTTGTCTATCATTACCTTATAAATATGGAATATAGATTTACAAAGCCTTTTGTCCGTTCACTATTCTGGAGAAGGTTATTAGGTCCTAGTTATTAGACAAGCAGATTCATTTGCATAGTGACATATTTTGTGGGCATCATTAGATCAGATAATGCTTGGTTAGAAGCGAGGATGCTTGGCATGTTGAGATGCTTACCTTCAGCCGGTGTGTTGGATGTAACATCATAGAATAAAATAGTATGTTGAGTGAATAGTAGGAGTTTCAGACATGTTGAGAGATCATCACTGTTATTGTTGGCTGTAGCATCATTGAATATGTTAGTGCTTAGTTGAATAGGCAAAGGATGTCTGACATGTCAGGACAGCCCAAATGCTGTATAATATTTGGAGGCTGGAGCAACTTGTGAGTAACAGGTCTACTTTTTGTATCTGCTGCTATTGTAGGTTAGAGAATCTTCTGGATGTGAAACTATGGCTGTAATCATTATAAGCTGGATTTTATATTGGGAAACTGGTGCATGTGATCCACGATCATGTGTACATGTCCAGAAATGTTAAACTTAAATCTCTTATATTTGTCTAGTGTATGGATAGTTTGTCTAACTAGTCCAATGTCATAAATGTGTCTTCCATTGGTTAAATGGTTATCTGAGATATATTTAGAGAGAATAATTGTTTTATTTTGGAAATCATGTATACAGGAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAGGTTCTCATATACTGGACCTAACATGTAGAACTACTGTATATATATATATATTTTTCATTTTGTTTGAGCATATGTTTTCTGCATCATCTTTAATTTGCAGCCTCGGCAGCC</genome_strand>
        <mrna_strand>CCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAG....................................................................................................CCTCGGCAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347882" ref_strand="+" ref_description="SGN-E347882 [cTOF-31-A4]">
      <seq>tcccgctgtttgttctctttctctctctacaatctctgccactttaccttcttacaatttctaagctttttccttatcaaatcttcacttttcacctgcacactagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagaactcaatttttttttcttgtggatttgttagaaattgcgtgtagacaaggttattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctcccggtggaagaggtgcctccagaacttcctgaaccagcattgggcataaattttgcacgtgatggaatgcaagaaaaagactggttatcacttgttgctgttcacagtgattcgtggctgctttctgttgcattttactttggcgcaaggttttgggttcggcaagagtgataggaagaggcttttccaaatgataaatgatctcccaacagtgttttgaagttgttactggagctgctaaacaaacacgtgatgctcctcacaacaatagcaacaaaagcaaatcaagtggaaagcctcggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75253" stop="69851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74953" g_stop="74605" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="388" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72309" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="618" r_length="230" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72308" i_stop="70276" i_length="2033">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70275" g_stop="70155" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="740" r_length="122" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70154" i_stop="70055" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70054" g_stop="70046" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="749" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E347882" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74953" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72309"/>
          <exon e_start="70275" e_stop="70155"/>
          <exon e_start="70054" e_stop="70046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTA-CTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCA-TTTTCA-CTGCACA-TAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAG-ACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGG-TTTGGGTTCGGCAAGAGTGATAGGTAAAATAACATCCACCCTCTCTTTTGAACTCTGAATTTGCAGTGTCTGTTAGGTAATATCTGCTCGCGCTTCTTTTTATCTTCTGGGGTTTATCTAGTGGCATATGTTGAGCTATGTCTTTCCTATAGCTGTTCCCCTCATGCTTCTTAAAATTCATCTCCCCAAGCATTTAGTGCATCCAGAACTTGTATGCTCCATCGATCAATTTTAGGGAGATAAGCTTCTGTGATTGCTGTCCGTTTTTTTTCCATAGCTGAGATAATTTTCCATGAAAAATCACTGAAGAAATTTAGTCAACAATCATGTATGAACATCTCTTTCCCAGAACTGTACTTTCTAACCCATACAACAGTTGGAGCTCCCTTTTTTCCCTTTGATCTTTGTTGAAGAAACAGTTACATGTTTCGTTTTTGTTGTCTTCTTGCTTACAATGTAGTGTTTGACCTGTTTTTTGCCTCTCATTGAGGTATGTTAACCCAGCAATCAATCAATCATGAACTAGGCTAATCTCGAATAAGGTTGGTTTGATTCCCTTATCTGCTTCATCTCTACAAGATTCAGTATTTAGGATTCATCATAATTAGACGAGTTTATGCTTGCTGTTAATCTACTCCAATCCTTCTGCTTCATCGACATATTAAGGCTCTTAATAGACAGTTGTGGCTGATTGATGGTGTTGAGTTTAAAACATCTTTTTCATTCTAAGGATATACTTTATATACAAAAGCACCAAGAAGCTGCAAATATATTGAGAGAGTTTATAACAGTAAAACTCTGAAGTTTAAGTATTAGCTGTAATTAGGATTACTAAGTTATAACTCTGGAGTGGAGAATTTCTAGCAGTGAGATTATTTGGGCAATATATAGAAGTCCACCTTCATCCAAAGTTCATTTAGTCGGTGTTTCATATTTTCTGTGTCATGAAAACATGATAAGACTTACCGATAAGCTGTAGTTGCTTTGGAGGTTGGTAGCTGCATCAAGGGAATTTGGAAAATGATACCTGCAGCCACTTTTTGGAGTATCTGGAATGATAGTAATAGAAGATGCTTTTAATGTAAAAGCTAGTTGCCTCATGTTTTTGTATAGTTGGTTTATTTATCCCTCTCGATTCCCGGCTCCTTTCTAAGCTTTGTCAGCTCCCCGAATCTTAACTAGCAATGTGAAGGAGCTACTGTATTTTTGTAACTATTATGCATCTACTTTATGTCTGCGATATACTAATAACTTCGTTATAAAAAAAGATGTCTTATTACTTTGTCTTGGTGAGCATACTGATGACTTGTTGCAATGAGATTCCAGACATCTTCCATTTTTAGGTTTCTATAGAATTTGTCTATCATTACCTTATAAATATGGAATATAGATTTACAAAGCCTTTTGTCCGTTCACTATTCTGGAGAAGGTTATTAGGTCCTAGTTATTAGACAAGCAGATTCATTTGCATAGTGACATATTTTGTGGGCATCATTAGATCAGATAATGCTTGGTTAGAAGCGAGGATGCTTGGCATGTTGAGATGCTTACCTTCAGCCGGTGTGTTGGATGTAACATCATAGAATAAAATAGTATGTTGAGTGAATAGTAGGAGTTTCAGACATGTTGAGAGATCATCACTGTTATTGTTGGCTGTAGCATCATTGAATATGTTAGTGCTTAGTTGAATAGGCAAAGGATGTCTGACATGTCAGGACAGCCCAAATGCTGTATAATATTTGGAGGCTGGAGCAACTTGTGAGTAACAGGTCTACTTTTTGTATCTGCTGCTATTGTAGGTTAGAGAATCTTCTGGATGTGAAACTATGGCTGTAATCATTATAAGCTGGATTTTATATTGGGAAACTGGTGCATGTGATCCACGATCATGTGTACATGTCCAGAAATGTTAAACTTAAATCTCTTATATTTGTCTAGTGTATGGATAGTTTGTCTAACTAGTCCAATGTCATAAATGTGTCTTCCATTGGTTAAATGGTTATCTGAGATATATTTAGAGAGAATAATTGTTTTATTTTGGAAATCATGTATACAGGAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTG-TTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAGGTTCTCATATACTGGACCTAACATGTAGAACTACTGTATATATATATATATTTTTCATTTTGTTTGAGCATATGTTTTCTGCATCATCTTTAATTTGCAGCCTCGGCAG</genome_strand>
        <mrna_strand>TCCCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACCTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCACTTTTCACCTGCACACTAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGAACTCAATTTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTTGGGTTCGGCAAGAGTGATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAG....................................................................................................CCTCGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578533" ref_strand="+" ref_description="SGN-E578533 [85651]">
      <seq>gttttgggtctcattctcctctttctctccctacaatttctgcaactttacttcttagaattttctcataaaaatctaagctttttctttatgaaatcttcattttcacttcacatagcaaactaattttcaaattttgagcaacatgaagtggaaactttagttcttggggaaaaccctaatttatttcaacccacttcttgtttttttttttcaaagactcaatttttttcttcttgtggggttgttagaaattgcgtgtagacaagggtagtatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttaattaaagcccttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctcccggtggaagaggtccctccagaacttccggaaccagcattgggcataaattttgcacgtgatggaatgcaagaaaaagactggttatcacttgttgctgttcacagtgattcatggctgctttctgttgcattttactttggtgcaaggtttgggttcggcaagagtgaaaggaagaggcttttccaaatgataaatgatctcccaacagtgtttgaagttgttaccggagctgctaaacagacacgtgatccccctcacaacaatagcaacaaaagcaaatcaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75213" stop="69861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74899" g_stop="74605" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="363" r_length="293" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="396" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72309" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="625" r_length="229" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72308" i_stop="70276" i_length="2033">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70275" g_stop="70163" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="738" r_length="113" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E578533" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74899" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72309"/>
          <exon e_start="70275" e_stop="70163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTT-TTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAGGTAAAATAACATCCACCCTCTCTTTTGAACTCTGAATTTGCAGTGTCTGTTAGGTAATATCTGCTCGCGCTTCTTTTTATCTTCTGGGGTTTATCTAGTGGCATATGTTGAGCTATGTCTTTCCTATAGCTGTTCCCCTCATGCTTCTTAAAATTCATCTCCCCAAGCATTTAGTGCATCCAGAACTTGTATGCTCCATCGATCAATTTTAGGGAGATAAGCTTCTGTGATTGCTGTCCGTTTTTTTTCCATAGCTGAGATAATTTTCCATGAAAAATCACTGAAGAAATTTAGTCAACAATCATGTATGAACATCTCTTTCCCAGAACTGTACTTTCTAACCCATACAACAGTTGGAGCTCCCTTTTTTCCCTTTGATCTTTGTTGAAGAAACAGTTACATGTTTCGTTTTTGTTGTCTTCTTGCTTACAATGTAGTGTTTGACCTGTTTTTTGCCTCTCATTGAGGTATGTTAACCCAGCAATCAATCAATCATGAACTAGGCTAATCTCGAATAAGGTTGGTTTGATTCCCTTATCTGCTTCATCTCTACAAGATTCAGTATTTAGGATTCATCATAATTAGACGAGTTTATGCTTGCTGTTAATCTACTCCAATCCTTCTGCTTCATCGACATATTAAGGCTCTTAATAGACAGTTGTGGCTGATTGATGGTGTTGAGTTTAAAACATCTTTTTCATTCTAAGGATATACTTTATATACAAAAGCACCAAGAAGCTGCAAATATATTGAGAGAGTTTATAACAGTAAAACTCTGAAGTTTAAGTATTAGCTGTAATTAGGATTACTAAGTTATAACTCTGGAGTGGAGAATTTCTAGCAGTGAGATTATTTGGGCAATATATAGAAGTCCACCTTCATCCAAAGTTCATTTAGTCGGTGTTTCATATTTTCTGTGTCATGAAAACATGATAAGACTTACCGATAAGCTGTAGTTGCTTTGGAGGTTGGTAGCTGCATCAAGGGAATTTGGAAAATGATACCTGCAGCCACTTTTTGGAGTATCTGGAATGATAGTAATAGAAGATGCTTTTAATGTAAAAGCTAGTTGCCTCATGTTTTTGTATAGTTGGTTTATTTATCCCTCTCGATTCCCGGCTCCTTTCTAAGCTTTGTCAGCTCCCCGAATCTTAACTAGCAATGTGAAGGAGCTACTGTATTTTTGTAACTATTATGCATCTACTTTATGTCTGCGATATACTAATAACTTCGTTATAAAAAAAGATGTCTTATTACTTTGTCTTGGTGAGCATACTGATGACTTGTTGCAATGAGATTCCAGACATCTTCCATTTTTAGGTTTCTATAGAATTTGTCTATCATTACCTTATAAATATGGAATATAGATTTACAAAGCCTTTTGTCCGTTCACTATTCTGGAGAAGGTTATTAGGTCCTAGTTATTAGACAAGCAGATTCATTTGCATAGTGACATATTTTGTGGGCATCATTAGATCAGATAATGCTTGGTTAGAAGCGAGGATGCTTGGCATGTTGAGATGCTTACCTTCAGCCGGTGTGTTGGATGTAACATCATAGAATAAAATAGTATGTTGAGTGAATAGTAGGAGTTTCAGACATGTTGAGAGATCATCACTGTTATTGTTGGCTGTAGCATCATTGAATATGTTAGTGCTTAGTTGAATAGGCAAAGGATGTCTGACATGTCAGGACAGCCCAAATGCTGTATAATATTTGGAGGCTGGAGCAACTTGTGAGTAACAGGTCTACTTTTTGTATCTGCTGCTATTGTAGGTTAGAGAATCTTCTGGATGTGAAACTATGGCTGTAATCATTATAAGCTGGATTTTATATTGGGAAACTGGTGCATGTGATCCACGATCATGTGTACATGTCCAGAAATGTTAAACTTAAATCTCTTATATTTGTCTAGTGTATGGATAGTTTGTCTAACTAGTCCAATGTCATAAATGTGTCTTCCATTGGTTAAATGGTTATCTGAGATATATTTAGAGAGAATAATTGTTTTATTTTGGAAATCATGTATACAGGAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAA</genome_strand>
        <mrna_strand>AAAATCTAAGCTTTTTCTTTATGAAATCTTCATTTTCACTTCACATAGCAAACTAATTTTCAAATTTTGAGCAACATGAAGTGGAAACTTTAGTTCTT-GGGGAAAACCCTAATTTATTTCAACCCACTTCTTG-TTTTTTT-TTTT-CAAAGACTCAATTTTTTTCTTCTTGTGGGGTTGTTAGAAATTGCGTGTAGACAAGGGTAGTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTAATTAAAGCCCTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTCCCTCCAGAACTTCCGGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCATGGCTGCTTTCTGTTGCATTTTACTTTGGTGCAAGGTTTGGGTTCGGCAAGAGTGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACCGGAGCTGCTAAACAGACACGTGATCCCCCTCACAACAATAGCAACAAAAGCAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699443" ref_strand="+" ref_description="SGN-E699443 [FA10AE06]">
      <seq>ccctatctctgccactttacttcttacaatttctaagctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttgttaaaaattgcgtgtaaacaaggttattatggaaaattcggtacccaggactgtacaagaagtattcaccgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctcccggtggaagaggtgcctccagaacttcctgaaccagcattgggcataaattttgcacgtgatggaatgcaagaaaaagactggttatcacttgttgctgttcacagtgattcgtggctgctttctgttgcattttactttggcgcaaggtttgggttcggcaagagtgatagcaaaaggcttttcccaaatgataaatgatctcccaacagtgtttgaagttgttactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75224" stop="69919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74926" g_stop="74605" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="356" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72309" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="585" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72308" i_stop="70276" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70275" g_stop="70219" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="643" r_length="58" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E699443" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74926" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72309"/>
          <exon e_start="70275" e_stop="70219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAGGTAAAATAACATCCACCCTCTCTTTTGAACTCTGAATTTGCAGTGTCTGTTAGGTAATATCTGCTCGCGCTTCTTTTTATCTTCTGGGGTTTATCTAGTGGCATATGTTGAGCTATGTCTTTCCTATAGCTGTTCCCCTCATGCTTCTTAAAATTCATCTCCCCAAGCATTTAGTGCATCCAGAACTTGTATGCTCCATCGATCAATTTTAGGGAGATAAGCTTCTGTGATTGCTGTCCGTTTTTTTTCCATAGCTGAGATAATTTTCCATGAAAAATCACTGAAGAAATTTAGTCAACAATCATGTATGAACATCTCTTTCCCAGAACTGTACTTTCTAACCCATACAACAGTTGGAGCTCCCTTTTTTCCCTTTGATCTTTGTTGAAGAAACAGTTACATGTTTCGTTTTTGTTGTCTTCTTGCTTACAATGTAGTGTTTGACCTGTTTTTTGCCTCTCATTGAGGTATGTTAACCCAGCAATCAATCAATCATGAACTAGGCTAATCTCGAATAAGGTTGGTTTGATTCCCTTATCTGCTTCATCTCTACAAGATTCAGTATTTAGGATTCATCATAATTAGACGAGTTTATGCTTGCTGTTAATCTACTCCAATCCTTCTGCTTCATCGACATATTAAGGCTCTTAATAGACAGTTGTGGCTGATTGATGGTGTTGAGTTTAAAACATCTTTTTCATTCTAAGGATATACTTTATATACAAAAGCACCAAGAAGCTGCAAATATATTGAGAGAGTTTATAACAGTAAAACTCTGAAGTTTAAGTATTAGCTGTAATTAGGATTACTAAGTTATAACTCTGGAGTGGAGAATTTCTAGCAGTGAGATTATTTGGGCAATATATAGAAGTCCACCTTCATCCAAAGTTCATTTAGTCGGTGTTTCATATTTTCTGTGTCATGAAAACATGATAAGACTTACCGATAAGCTGTAGTTGCTTTGGAGGTTGGTAGCTGCATCAAGGGAATTTGGAAAATGATACCTGCAGCCACTTTTTGGAGTATCTGGAATGATAGTAATAGAAGATGCTTTTAATGTAAAAGCTAGTTGCCTCATGTTTTTGTATAGTTGGTTTATTTATCCCTCTCGATTCCCGGCTCCTTTCTAAGCTTTGTCAGCTCCCCGAATCTTAACTAGCAATGTGAAGGAGCTACTGTATTTTTGTAACTATTATGCATCTACTTTATGTCTGCGATATACTAATAACTTCGTTATAAAAAAAGATGTCTTATTACTTTGTCTTGGTGAGCATACTGATGACTTGTTGCAATGAGATTCCAGACATCTTCCATTTTTAGGTTTCTATAGAATTTGTCTATCATTACCTTATAAATATGGAATATAGATTTACAAAGCCTTTTGTCCGTTCACTATTCTGGAGAAGGTTATTAGGTCCTAGTTATTAGACAAGCAGATTCATTTGCATAGTGACATATTTTGTGGGCATCATTAGATCAGATAATGCTTGGTTAGAAGCGAGGATGCTTGGCATGTTGAGATGCTTACCTTCAGCCGGTGTGTTGGATGTAACATCATAGAATAAAATAGTATGTTGAGTGAATAGTAGGAGTTTCAGACATGTTGAGAGATCATCACTGTTATTGTTGGCTGTAGCATCATTGAATATGTTAGTGCTTAGTTGAATAGGCAAAGGATGTCTGACATGTCAGGACAGCCCAAATGCTGTATAATATTTGGAGGCTGGAGCAACTTGTGAGTAACAGGTCTACTTTTTGTATCTGCTGCTATTGTAGGTTAGAGAATCTTCTGGATGTGAAACTATGGCTGTAATCATTATAAGCTGGATTTTATATTGGGAAACTGGTGCATGTGATCCACGATCATGTGTACATGTCCAGAAATGTTAAACTTAAATCTCTTATATTTGTCTAGTGTATGGATAGTTTGTCTAACTAGTCCAATGTCATAAATGTGTCTTCCATTGGTTAAATGGTTATCTGAGATATATTTAGAGAGAATAATTGTTTTATTTTGGAAATCATGTATACAGGAAGAGGCTTTT-CCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGG</genome_strand>
        <mrna_strand>CCCTATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTGTTAAAAATTGCGTGTAAACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTACAAGAAGTATTCACCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGGCTTTTCCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256134" ref_strand="+" ref_description="SGN-E256134 [cLEG-37-L2]">
      <seq>ccgctgtttgttctctttctctctctacaatctctgccactttacttcttacaatttctaagctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttgttagaaattgcgtgtagacaaggttattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctcccggtggaagaggtgcctccagaacttcctgaaccagcattgggcataaattttgcacgtgatggaatgcaagaaaaagactggttatcacttgttgctgttcacagtgattcgtggctgctttctgttgcattttactttggcgcaaggtttgggttcggcaagagtgataggaagaggcttttccaaatgataaatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75251" stop="69946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74951" g_stop="74605" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="381" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72309" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="610" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72308" i_stop="70276" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70275" g_stop="70246" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="640" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E256134" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74951" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72309"/>
          <exon e_start="70275" e_stop="70246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAGGTAAAATAACATCCACCCTCTCTTTTGAACTCTGAATTTGCAGTGTCTGTTAGGTAATATCTGCTCGCGCTTCTTTTTATCTTCTGGGGTTTATCTAGTGGCATATGTTGAGCTATGTCTTTCCTATAGCTGTTCCCCTCATGCTTCTTAAAATTCATCTCCCCAAGCATTTAGTGCATCCAGAACTTGTATGCTCCATCGATCAATTTTAGGGAGATAAGCTTCTGTGATTGCTGTCCGTTTTTTTTCCATAGCTGAGATAATTTTCCATGAAAAATCACTGAAGAAATTTAGTCAACAATCATGTATGAACATCTCTTTCCCAGAACTGTACTTTCTAACCCATACAACAGTTGGAGCTCCCTTTTTTCCCTTTGATCTTTGTTGAAGAAACAGTTACATGTTTCGTTTTTGTTGTCTTCTTGCTTACAATGTAGTGTTTGACCTGTTTTTTGCCTCTCATTGAGGTATGTTAACCCAGCAATCAATCAATCATGAACTAGGCTAATCTCGAATAAGGTTGGTTTGATTCCCTTATCTGCTTCATCTCTACAAGATTCAGTATTTAGGATTCATCATAATTAGACGAGTTTATGCTTGCTGTTAATCTACTCCAATCCTTCTGCTTCATCGACATATTAAGGCTCTTAATAGACAGTTGTGGCTGATTGATGGTGTTGAGTTTAAAACATCTTTTTCATTCTAAGGATATACTTTATATACAAAAGCACCAAGAAGCTGCAAATATATTGAGAGAGTTTATAACAGTAAAACTCTGAAGTTTAAGTATTAGCTGTAATTAGGATTACTAAGTTATAACTCTGGAGTGGAGAATTTCTAGCAGTGAGATTATTTGGGCAATATATAGAAGTCCACCTTCATCCAAAGTTCATTTAGTCGGTGTTTCATATTTTCTGTGTCATGAAAACATGATAAGACTTACCGATAAGCTGTAGTTGCTTTGGAGGTTGGTAGCTGCATCAAGGGAATTTGGAAAATGATACCTGCAGCCACTTTTTGGAGTATCTGGAATGATAGTAATAGAAGATGCTTTTAATGTAAAAGCTAGTTGCCTCATGTTTTTGTATAGTTGGTTTATTTATCCCTCTCGATTCCCGGCTCCTTTCTAAGCTTTGTCAGCTCCCCGAATCTTAACTAGCAATGTGAAGGAGCTACTGTATTTTTGTAACTATTATGCATCTACTTTATGTCTGCGATATACTAATAACTTCGTTATAAAAAAAGATGTCTTATTACTTTGTCTTGGTGAGCATACTGATGACTTGTTGCAATGAGATTCCAGACATCTTCCATTTTTAGGTTTCTATAGAATTTGTCTATCATTACCTTATAAATATGGAATATAGATTTACAAAGCCTTTTGTCCGTTCACTATTCTGGAGAAGGTTATTAGGTCCTAGTTATTAGACAAGCAGATTCATTTGCATAGTGACATATTTTGTGGGCATCATTAGATCAGATAATGCTTGGTTAGAAGCGAGGATGCTTGGCATGTTGAGATGCTTACCTTCAGCCGGTGTGTTGGATGTAACATCATAGAATAAAATAGTATGTTGAGTGAATAGTAGGAGTTTCAGACATGTTGAGAGATCATCACTGTTATTGTTGGCTGTAGCATCATTGAATATGTTAGTGCTTAGTTGAATAGGCAAAGGATGTCTGACATGTCAGGACAGCCCAAATGCTGTATAATATTTGGAGGCTGGAGCAACTTGTGAGTAACAGGTCTACTTTTTGTATCTGCTGCTATTGTAGGTTAGAGAATCTTCTGGATGTGAAACTATGGCTGTAATCATTATAAGCTGGATTTTATATTGGGAAACTGGTGCATGTGATCCACGATCATGTGTACATGTCCAGAAATGTTAAACTTAAATCTCTTATATTTGTCTAGTGTATGGATAGTTTGTCTAACTAGTCCAATGTCATAAATGTGTCTTCCATTGGTTAAATGGTTATCTGAGATATATTTAGAGAGAATAATTGTTTTATTTTGGAAATCATGTATACAGGAAGAGGCTTTTCCAAATGATAAATGATCT</genome_strand>
        <mrna_strand>CCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGATAAATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440517" ref_strand="+" ref_description="SGN-E440517 [cSTA-17-C12]">
      <seq>aaactttagttcttggggaaaaccctaatttatttcaactcacttcttgtttttttttttttttcaaagactcaatttttttcttcttgtggggttgttagaaattgcgtgtagacaagggtagtatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttaattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctcccggtggaagaggtccctccagaacttccggaaccagcattgggcataaattttgcacgtgatggaatgcaagagaaagactggttatcacttgttgctgttcacagtgattcatggctgctttctgttgcattttactttggtgcaaggtttgggttcggcaagagtgaaaggaagaggcttttccaaatgataaatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75115" stop="69946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74815" g_stop="74605" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="246" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72309" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="475" r_length="229" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72308" i_stop="70276" i_length="2033">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70275" g_stop="70246" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="505" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E440517" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74815" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72309"/>
          <exon e_start="70275" e_stop="70246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTG-TTTTTTTTCTTTTCCAAAGACTCAA-TTTTTT-TTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAGGTAAAATAACATCCACCCTCTCTTTTGAACTCTGAATTTGCAGTGTCTGTTAGGTAATATCTGCTCGCGCTTCTTTTTATCTTCTGGGGTTTATCTAGTGGCATATGTTGAGCTATGTCTTTCCTATAGCTGTTCCCCTCATGCTTCTTAAAATTCATCTCCCCAAGCATTTAGTGCATCCAGAACTTGTATGCTCCATCGATCAATTTTAGGGAGATAAGCTTCTGTGATTGCTGTCCGTTTTTTTTCCATAGCTGAGATAATTTTCCATGAAAAATCACTGAAGAAATTTAGTCAACAATCATGTATGAACATCTCTTTCCCAGAACTGTACTTTCTAACCCATACAACAGTTGGAGCTCCCTTTTTTCCCTTTGATCTTTGTTGAAGAAACAGTTACATGTTTCGTTTTTGTTGTCTTCTTGCTTACAATGTAGTGTTTGACCTGTTTTTTGCCTCTCATTGAGGTATGTTAACCCAGCAATCAATCAATCATGAACTAGGCTAATCTCGAATAAGGTTGGTTTGATTCCCTTATCTGCTTCATCTCTACAAGATTCAGTATTTAGGATTCATCATAATTAGACGAGTTTATGCTTGCTGTTAATCTACTCCAATCCTTCTGCTTCATCGACATATTAAGGCTCTTAATAGACAGTTGTGGCTGATTGATGGTGTTGAGTTTAAAACATCTTTTTCATTCTAAGGATATACTTTATATACAAAAGCACCAAGAAGCTGCAAATATATTGAGAGAGTTTATAACAGTAAAACTCTGAAGTTTAAGTATTAGCTGTAATTAGGATTACTAAGTTATAACTCTGGAGTGGAGAATTTCTAGCAGTGAGATTATTTGGGCAATATATAGAAGTCCACCTTCATCCAAAGTTCATTTAGTCGGTGTTTCATATTTTCTGTGTCATGAAAACATGATAAGACTTACCGATAAGCTGTAGTTGCTTTGGAGGTTGGTAGCTGCATCAAGGGAATTTGGAAAATGATACCTGCAGCCACTTTTTGGAGTATCTGGAATGATAGTAATAGAAGATGCTTTTAATGTAAAAGCTAGTTGCCTCATGTTTTTGTATAGTTGGTTTATTTATCCCTCTCGATTCCCGGCTCCTTTCTAAGCTTTGTCAGCTCCCCGAATCTTAACTAGCAATGTGAAGGAGCTACTGTATTTTTGTAACTATTATGCATCTACTTTATGTCTGCGATATACTAATAACTTCGTTATAAAAAAAGATGTCTTATTACTTTGTCTTGGTGAGCATACTGATGACTTGTTGCAATGAGATTCCAGACATCTTCCATTTTTAGGTTTCTATAGAATTTGTCTATCATTACCTTATAAATATGGAATATAGATTTACAAAGCCTTTTGTCCGTTCACTATTCTGGAGAAGGTTATTAGGTCCTAGTTATTAGACAAGCAGATTCATTTGCATAGTGACATATTTTGTGGGCATCATTAGATCAGATAATGCTTGGTTAGAAGCGAGGATGCTTGGCATGTTGAGATGCTTACCTTCAGCCGGTGTGTTGGATGTAACATCATAGAATAAAATAGTATGTTGAGTGAATAGTAGGAGTTTCAGACATGTTGAGAGATCATCACTGTTATTGTTGGCTGTAGCATCATTGAATATGTTAGTGCTTAGTTGAATAGGCAAAGGATGTCTGACATGTCAGGACAGCCCAAATGCTGTATAATATTTGGAGGCTGGAGCAACTTGTGAGTAACAGGTCTACTTTTTGTATCTGCTGCTATTGTAGGTTAGAGAATCTTCTGGATGTGAAACTATGGCTGTAATCATTATAAGCTGGATTTTATATTGGGAAACTGGTGCATGTGATCCACGATCATGTGTACATGTCCAGAAATGTTAAACTTAAATCTCTTATATTTGTCTAGTGTATGGATAGTTTGTCTAACTAGTCCAATGTCATAAATGTGTCTTCCATTGGTTAAATGGTTATCTGAGATATATTTAGAGAGAATAATTGTTTTATTTTGGAAATCATGTATACAGGAAGAGGCTTTTCCAAATGATAAATGATCT</genome_strand>
        <mrna_strand>AAACTTTAGTTCTT-GGGGAAAACCCTAATTTATTTCAACTCACTTCTTGTTTTTTTTTTTTTTTCAAAGACTCAATTTTTTTCTTCTTGTGGGGTTGTTAGAAATTGCGTGTAGACAAGGGTAGTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTAATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTCCCTCCAGAACTTCCGGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCATGGCTGCTTTCTGTTGCATTTTACTTTGGTGCAAGGTTTGGGTTCGGCAAGAGTGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGCTTTTCCAAATGATAAATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448821" ref_strand="+" ref_description="SGN-E448821 [cSTS-4-F19]">
      <seq>ctctccctacaatttctgcaactttacttcttacaattttctcataaaaatataagctttttctttatgaaatcttcattttcacttcacatagcaaactaattttcaaattttgagcaacatgaagtggaaactttagttcttggggaaaaccctaatttatttcaactcacttcttgttttttttttttttcaaagactcaatttttttcttcttgtggggttgttagaaattgcgtgtagacaagggtagtatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttaattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctcccggtggaagaggtccctccagaacttccggaaccagcattgggcataaattttgcacgtgatggaatgcaagagaaagactggttatcacttgttgctgttcacagtgattcatggctgctttctgttgcattttactttggtgcaaggtttgggttcggcaagagtgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75227" stop="72009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74889" g_stop="74605" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="342" r_length="286" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="375" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72309" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="604" r_length="229" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E448821" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74889" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTT-TTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAG</genome_strand>
        <mrna_strand>CTTTTTCTTTATGAAATCTTCATTTTCACTTCACATAGCAAACTAATTTTCAAATTTTGAGCAACATGAAGTGGAAACTTTAGTTCTT-GGGGAAAACCCTAATTTATTTCAACTCACTTCTTGTTTTTTTTTTTTTTCAAAGACTCAATTTTTTTCTTCTTGTGGGGTTGTTAGAAATTGCGTGTAGACAAGGGTAGTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTAATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTCCCTCCAGAACTTCCGGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCATGGCTGCTTTCTGTTGCATTTTACTTTGGTGCAAGGTTTGGGTTCGGCAAGAGTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272544" ref_strand="+" ref_description="SGN-E272544 [cLEM-21-E20]">
      <seq>accaaaaaccctttccctctcttcccgctgtttgttctctttctctctctacaatctctgccactttacttcttacaatttctaagctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttgttagaaattgcgtgtagacaaggttattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctcccggtggaagaggtgcctccagaacttcctgaaccagcattgggcataaattttgcacgtgatggaatgcaagaaaaagactggttatcacttgttgctgttcacagtgattcgtggctgctttctgttgcattttacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75275" stop="72041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74975" g_stop="74605" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="405" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72341" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="602" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E272544" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74975" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAACCCTTTCCCTCTCTTCCCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTT</genome_strand>
        <mrna_strand>ACCAAAAACCCTTTCCCTCTCTTCCCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310392" ref_strand="+" ref_description="SGN-E310392 [cTOA-10-G22]">
      <seq>ctctctacaatctctgccactttacttcttacaatttctaagctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttgttagaaattgcgtgtagacaaggttattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctcccggtggaagaggtgcctccagaacttcctgaaccagcattgggcataaattttgcacgtgatggaatgcaagaaaaagactggttatcacttgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75231" stop="72083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74931" g_stop="74605" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="361" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72383" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="516" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E310392" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74931" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCT</genome_strand>
        <mrna_strand>CTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270095" ref_strand="+" ref_description="SGN-E270095 [cLEM-7-F13]">
      <seq>tttgttctctttctctctctacaatctctgccactttacttcttacaatttctaagctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttgttagaaattgcgtgtagacaaggttattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagtaaacctcccggtggaagaggtgcctccagaacttcctgaaccagcattgggcataaattttgcacgtgatggaatgcaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75245" stop="72105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74945" g_stop="74605" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="375" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72405" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="508" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E270095" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74945" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAA</genome_strand>
        <mrna_strand>TTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330665" ref_strand="+" ref_description="SGN-E330665 [cTOD-8-C9]">
      <seq>cttcccgctgtttgttctctttctctctctacaatctctggcactttacttcttacaatttctaagctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttgttagaaattgcgtgtagacaaggttattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaggagaacttgtgtctctatgggcttcctaatgaaacatgggaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75255" stop="65366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74955" g_stop="74605" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="385" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72489" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="434" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E330665" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74955" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGT</genome_strand>
        <mrna_strand>CTTCCCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGGCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253012" ref_strand="+" ref_description="SGN-E253012 [cLEG-25-H10]">
      <seq>ccgctgtttgttctctttctctctctacattctctgccactttacttcttacaatttctaagctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttgttagaaattgcgtgtagacaaggttattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctggaatgggaagattgtatttttgtgaagtagtttatcgcttcaatcaaaaaagcaattcttctgcatgtacaacagaattatcatgatttcaaactgcattccacaacatgaattgtaaaaaaaaggagaacttgtgtctctatgggcttcctaatgaaacatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75251" stop="72193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74951" g_stop="74605" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="381" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="74078" i_length="364">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74077" g_stop="73958" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="501" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73957" i_stop="72538" i_length="1420">
            <donor d_prob="0.569" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72537" g_stop="72493" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="546" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E253012" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74951" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="74077" e_stop="73958"/>
          <exon e_start="72537" e_stop="72493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGG</genome_strand>
        <mrna_strand>CCGCTGTTTGTTCTCTTTCTCTCTCTACATTCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG............................................................................................................................................................................................................................................................................................................................................................................GAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259056" ref_strand="+" ref_description="SGN-E259056 [cLEG-41-C16]">
      <seq>ccgctgtttgttctctttctctctctacaatctctgccactttacttcttacaatttctaagctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttgttagaaattgcgtgtagacaaggttattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgaaaaagagaacttgtgtctctatgggcttcctaatgaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75251" stop="65373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74951" g_stop="74605" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="381" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72537" g_stop="72496" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="423" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E259056" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74951" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="72537" e_stop="72496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACAT</genome_strand>
        <mrna_strand>CCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395311" ref_strand="-" ref_description="SGN-E395311 [TUS-43-M9](-)">
      <seq>tgccctttctctctctacaatctctgccactttacttcttacaatttctaagctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttgttagaaattgcgtgtagacaaggttattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttgattaaagcacttaccacagatgttgagaagttttatcagcagtgtgatcctgggagtggcctaaaccttatggttagaggtttctgattgttggaatcattttgtcattcaatgttcttctttgggtgttatgcaggaatgggaagattgtatttttgtgagggagtttatcgcttcaatcaaaaaagcaattcttctgcatgtacaacagaattatcatgatttccaactgcattccacaacatgaattgtaaaaaaaaggagaacttgtgtctctatgggcttcctaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75241" stop="72204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74941" g_stop="74605" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74474" g_stop="74442" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="371" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74441" i_stop="74162" i_length="280">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74161" g_stop="73958" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="575" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73957" i_stop="72538" i_length="1420">
            <donor d_prob="0.569" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72537" g_stop="72502" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="611" r_length="36" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E395311" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395311" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74941" e_stop="74605"/>
          <exon e_start="74474" e_stop="74442"/>
          <exon e_start="74161" e_stop="73958"/>
          <exon e_start="72537" e_stop="72502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAGGTTTGTAGTTTTGTTTTTTAATTTTCATGAACTTTTATGGGTTTTTGAGCTTAATTACTTTCTGGGTGTTGATGAATTTTGTTGGGTTTTGCTAATTTTTTTGTTTCTTTTATAAAAAAAATTATTGCAGATGTTGAGAAGTTTTATCAGCAGTGTGATCCTGGTGAGTTTCTGTTGCTCGGTTTTAGATTGGATTATTGTGGTTCATCTATATTAGCGAAGTTGGTTGTTCTGTTTTATTGAGCTTGAGGTGTATTTCTAAATGTAGTATATTTCTTATAAGCTATAAGCTTTTAATTTCTGGGACTGTTCCTTCTGTATCTTGGAATTTCATTGTTAAATGTGGTTAAAATGATTATAAGTCACTTGATTAGACCTTTAACATTTCAGAATTCTTATCCTGTTTTTGTGTTGGTTTTGTAATTCCAATTTCGTTCTTTCAGGGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAAGTGAGATCATTACTTAGAATTTTATGTCATTTACAGTGTTGTCAAAGGTGTGCTTAAGCCTTGAAAGAGAAGCTCCAAACATGTTGAGGGCTTTGACTCACTTAATGTGCGTTTTATTTAGTGTCATTGTTAAGACTCTAACTCAAACTTTTCCTTGCAAATAGGTGTTGTCTGGGGAGACAACATTTAACAGTTGATATTTCACTTTATTGTGAAAATTTTTAATTTCTTTGTCCATAGATTTATTTTTCATGCTTATATTTATGAGTCTTGTACCAAATGTATGTATGTATGTATGTGTGTGTGTATATTTAAGTGTGTATATATATATATATATTTTTTTAAATTTTTTTCGATTTGCACCTTTTTTTCATAAAACCCACACTTTATTTGTGTTTAAATCCCCAACGGACCTTAGAGCTTTTCACTTTTGATTAATTAGTCATTTAATTAGGATGTCAATATCAGAAATCTATGCATTGTAATCTTGTGTATCAATTCTCAAGGAGATAGAGATGTAAAACTTCTTTTATGTAGCAGTGATCATCATTTCTCTATCACAATGACGCAGTGTCTCCAACCATCATTAATCTTGTTTATGATATGGGTAAAAGCACATGATTGCATATTATTGCAGTGTGAAAGCACTTTGATGTTTTCATGACTTTTTTTAATGTAAATGCGTGCATTTTCTGTGTACTTACTTAAGGTGTCTGGAGGCAGGGTAGTTAAAGTGGTTAGATACTATATTGTCACCTTATGATTAATAAATATTCTTGTTTTTTTGTTTTTCTCTTTCTTGGTAAGTTTTTGTTCTCTTTTTCATTTTTTGTTTTTTTTGGGGGGGTTAGGGGTTGGGTGTTGGGGTGGGGGAGGTTCTGTTATTTCTGGTATGTGAAAAAACATGGAAATTCTTAGTTTGTATTTGGCAGTTTTAGAGGTTTTCTTTTGTGCCAGCACTCGATAATTGTTTTTGAAGTATTTGTTATCGCAGTGATTCATACCGTAACTTTATCCCGAAAATTTGACTCCTTTCTTTTATGCGGTGTCTAACAGTTTATTTCATTTTTGTTGTTTATTTGCTCCCATTTATGGAACTGCTGATTATGACCTTTGTGACGATGCATATCAATAAACTACTCCCTCTCTGTATCAAACAGTTGTGTCAGTCCTTATGATAGTATATCTCTCTCTTAATTTTTCTTAGTCCTTCTTGAAGTTTTAAGGATAATAAGTTTCGCTTTCGTGTTGCATTATTCTTCTCCCCTTTGTTTCCAGTTTGCCCTCTTTTTTTCCTTGCTTTGATGCTTGTTGTGTGTTCCCCCTCATTGGATGTTCAATTCTTGTTTAGATCACTTGTGCAGATCATTTGTGAATTGTTGATGAAAATTTGTGAATTTAACCATATGTTTACTTTCAGAAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATG</genome_strand>
        <mrna_strand>TGCCCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG..................................................................................................................................ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG........................................................................................................................................................................................................................................................................................GGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAGGGAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCCAACTGCATTCCACAACATGAATTGTAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370084" ref_strand="+" ref_description="SGN-E370084 [TUS-26-D6]">
      <seq>ccgctgtttgttctctttctctctctacaatctctgccactttacttcttacaatttctaagctttttccttatcaaatcttcattttcactgcacatagcaaactaattttcaaattttgggcaacatgaagtggaaagtttagttcttggggggaaaccctattttatttcaacccacttcttgttttttttcttttccaaagactcaatttttttttcttgtggatttttttttttttgcgagcagacaagggtattatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgttttgattaaagcacttaccacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75251" stop="74305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74951" g_stop="74605" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E370084" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74951" e_stop="74605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG</genome_strand>
        <mrna_strand>CCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTTCTTGTGGATTTTTTTTTTTTTGCGAGCAGACAAGGGTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGTTTTGATTAAAGCACTTACCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470941" ref_strand="+" ref_description="SGN-E470941 [cSTB-21-K6]">
      <seq>attttctcataaaaatctaagctttttctttatgaaatcttcattttcacttcacatagcaaactaattttcaaattttgagcaacatgaagtggaaactttagttcttggggaaaaccctaatttatttcaacccacttcttgtttttttttttcaaagactcaatttttttcttcttgtggggttgttagaaattgcgtgtagacaagggtagtatggaaaattcggtacccaggactgtagaagaagtattcagcgatttcaaaagtcgtagagctgctttaattaaagcccttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="75211" stop="74309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74912" g_stop="74609" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E470941" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74912" e_stop="74609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAA-TTTTTT-TTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACC</genome_strand>
        <mrna_strand>ATTTTC-TCATAAAA-ATCTAAGCTTTTTCTTTATGAAATCTTCATTTTCACTTCACATAGCAAACTAATTTTCAAATTTTGAGCAACATGAAGTGGAAACTTTAGTTCTT-GGGGAAAACCCTAATTTATTTCAACCCACTTCTTG-TTTTTTT-TTTT-CAAAGACTCAATTTTTTTCTTCTTGTGGGGTTGTTAGAAATTGCGTGTAGACAAGGGTAGTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTAATTAAAGCCCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351497" ref_strand="+" ref_description="SGN-E351497 [cTOS-12-G21]">
      <seq>caacaaccacaatctttacttcatcaaggatcacttccatcttccgcggccgcggctttttcagacagattgtgggagtggaattcaattaatcaaacagatggaagctgcaaagatgatcattatgatcaaggcaataatcccttcaagtaatttcatcatcactaaactgcacatatacatatcatatatatatatctactgatatttataattttactagctagctagctagctctatgatcaaattaaataatgtgtgtgtgggatcttattgttagggttttggttagttctaattagttagggtactattattaagctattgtaatctttctaattacttttctgtacttgatgaaattagatatgtgctaattaagttagctctacagttcaattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="82041" stop="81038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81741" g_stop="81329" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E351497" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81741" e_stop="81329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACCACAATCTTTACTTCATCAAGGATCACTTCCATCTTCCGCGGCCGCGGCTTTTTCAGACAGATTGTGGGAGTGGAATTCAATTAATCAAACAGATGGAAGCTGCAAAGATGATCATTATGATCAAGGCAATAATCCCTTCAAGTAATTTCATCATCACTAAACTGCACATATACATATCATATATATATATCTACTGATATTTATAATTTTACTAGCTAGCTAGCTAGCTCTATGATCAAATTAAATAATGTGTGTGTGGGATCTTATTGTTAGGGTTTTGGTTAGTTCTAATTAGTTAGGGTACTATTATTAAGCTATTGTAATCTTTCTAATTACTTTTCTGTACTTGATGAAATTAGATATGTGCTAATTAAGTTAGCTCTACAGTTCAATTCATCTTCTTAG</genome_strand>
        <mrna_strand>CAACAACCACAATCTTTACTTCATCAAGGATCACTTCCATCTTCCGCGGCCGCGGCTTTTTCAGACAGATTGTGGGAGTGGAATTCAATTAATCAAACAGATGGAAGCTGCAAAGATGATCATTATGATCAAGGCAATAATCCCTTCAAGTAATTTCATCATCACTAAACTGCACATATACATATCATATATATATATCTACTGATATTTATAATTTTACTAGCTAGCTAGCTAGCTCTATGATCAAATTAAATAATGTGTGTGTGGGATCTTATTGTTAGGGTTTTGGTTAGTTCTAATTAGTTAGGGTACTATTATTAAGCTATTGTAATCTTTCTAATTACTTTTCTGTACTTGATGAAATTAGATATGTGCTAATTAAGTTAGCTCTACAGTTCAATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372947" ref_strand="+" ref_description="SGN-E372947 [TUS-32-N17](-)">
      <seq>atcagcatcatgttgctacatcactcgggctcaattccctctcaaattcctacactaacatcgcgctagaccctattgggagcgcggttaatatcactacatcaaccttaacacctttcacatcattagtagcaacaacaaataataccactgatgatctccatagactaataaacttagaccaagtcgtcgcgtttcataataatcaacaccattttcatcctcctcctggtgttgtgccccaacaatatcctcctccattattactgcaacaaccacaatctttacttcatcaaggatcacttccatcttccgcggccgcggctttttcagacagattgtgggagtggaattcaattaatcaaacagatggaagctgcaaagatgatcattatgatcaaggcaataatcccttcaagtaatttcatcatcactaaactgcacatatacatatcatatatatatatctactgatatttataattttactagctagctagctagctctatgatcaaattaaataatgtgtgtgtgggatcttattgttagggttttggttagttctaattagttagggtactattattaagctattgtaatctttctaattacttttctgtacttgatgaaattagatatgtgctaattaagttagctctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="82311" stop="81048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82011" g_stop="81348" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="664" polyA_stop="677"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E372947" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82011" e_stop="81348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCATCATGTTGCTACATCACTCGGGCTCAATTCCCTCTCAAATTCCTACACTAACATCGCGCTAGACCCTATTGGGGAGCGCGGTTAATATCACTACATCAACCTTAACACCTTTCACATCATTAGTAGCAACAACAAATAATACCACTGATGATCTCCATAGACTAATAAACTTAGACCAAGTCGTCGCGTTTCATAATAATCAACACCATTTTCATCCTCCTCCTGGTGTTGTGCCCCAACAATATCCTCCTCCATTATTACTGCAACAACCACAATCTTTACTTCATCAAGGATCACTTCCATCTTCCGCGGCCGCGGCTTTTTCAGACAGATTGTGGGAGTGGAATTCAATTAATCAAACAGATGGAAGCTGCAAAGATGATCATTATGATCAAGGCAATAATCCCTTCAAGTAATTTCATCATCACTAAACTGCACATATACATATCATATATATATATCTACTGATATTTATAATTTTACTAGCTAGCTAGCTAGCTCTATGATCAAATTAAATAATGTGTGTGTGGGATCTTATTGTTAGGGTTTTGGTTAGTTCTAATTAGTTAGGGTACTATTATTAAGCTATTGTAATCTTTCTAATTACTTTTCTGTACTTGATGAAATTAGATATGTGCTAATTAAGTTAGCTCTACA</genome_strand>
        <mrna_strand>ATCAGCATCATGTTGCTACATCACTCGGGCTCAATTCCCTCTCAAATTCCTACACTAACATCGCGCTAGACCCTATT-GGGAGCGCGGTTAATATCACTACATCAACCTTAACACCTTTCACATCATTAGTAGCAACAACAAATAATACCACTGATGATCTCCATAGACTAATAAACTTAGACCAAGTCGTCGCGTTTCATAATAATCAACACCATTTTCATCCTCCTCCTGGTGTTGTGCCCCAACAATATCCTCCTCCATTATTACTGCAACAACCACAATCTTTACTTCATCAAGGATCACTTCCATCTTCCGCGGCCGCGGCTTTTTCAGACAGATTGTGGGAGTGGAATTCAATTAATCAAACAGATGGAAGCTGCAAAGATGATCATTATGATCAAGGCAATAATCCCTTCAAGTAATTTCATCATCACTAAACTGCACATATACATATCATATATATATATCTACTGATATTTATAATTTTACTAGCTAGCTAGCTAGCTCTATGATCAAATTAAATAATGTGTGTGTGGGATCTTATTGTTAGGGTTTTGGTTAGTTCTAATTAGTTAGGGTACTATTATTAAGCTATTGTAATCTTTCTAATTACTTTTCTGTACTTGATGAAATTAGATATGTGCTAATTAAGTTAGCTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372948" ref_strand="+" ref_description="SGN-E372948 [TUS-32-N17]">
      <seq>aaagttatactatcttttttttttttatggcaattgtcccttttattactacaaacatgagtcaatcccaacaacaacatcaacaacaacaagatgatgatgataacaacaacatcaacaacactattaaaggagatgataatgatgatgacgatgatcatgaacacgacatggtcatgcctggttttcgatttcatcctactgaggaagagcttgtagagttttatcttcgccgtaaggttgaaggaaaacgttttaatgtggaactcatcacttttcttgatctttatcgttatgacccttgggagcttcctgctttggcagcaattggagagaaggagtggtatttctatgtccaagagatagaaagtatagaaatggagataggccaaatagggttacaacatcagggtattggaaggctactggagctgatagaatgattagaacggagaattcgcggtccattggcctgaaaaagacattggttttctactcagggaaggctcctaaaggcataagaagtagttggattatgaatgaatatcgtcttccacatcatgaaactgaacgcctacaaaaggcagaaatttcactttgtcgtgtctataaaagagctggagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="83647" stop="81930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83347" g_stop="83033" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83032" i_stop="82649" i_length="384">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82648" g_stop="82380" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="583" r_length="268" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82379" i_stop="82274" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.290" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82273" g_stop="82230" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="627" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E372948" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83347" e_stop="83033"/>
          <exon e_start="82648" e_stop="82380"/>
          <exon e_start="82273" e_stop="82230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTATACTATC-TTTTTTTTTTTATGGCAATTGTCCCTTTTATTACTACAAACATGAGTCAATCCCAACAACAACATCAACAACAACAAGATGATGATGATAACAACAACATCAACAACACTATTAAAGGAGATGATAATGATGATGACGATGATCATGAACACGACATGGTCATGCCTGGTTTTCGATTTCATCCTACTGAGGAAGAGCTTGTAGTAGTTTTATCTTCGCCGTAAGGTTGAAGGAAAACGTTTTAATGTGGAACTCATCACTTTTCTTGATCTTTATCGTTATGACCCTTGGGAGCTTCCTGGTATATACTACTATTCATTTTTACACTCTTTCAATTTCTTTCCTTTCTACGTAATACAAGCAGATTCAGAATTTAAATTTTAACACAAAGTTCCAGTCTTTTTTATTGTGAGTTCATAATTCAATGATTACTATAATCTATATCAATTTCTATACTAAAAATGTTGGTTTTAAATTGAACTTGTTGAACAAATTGTGAACAGTGGATTCATCTGTACTCAATACTTTGTGATGCAGATCATAATTATTCTTAAAAATATTAATTTTGAACCCTAGATCCGCCTCTGCTTTACTTTTGTGTGCTTTACCTAGCACATAATTTGGATTCCATTGAGTTTTATTTTTGGAAGTTTATTCTATATGTATAAGTTTGTTTGGTTCATAGCTTTGGCAGCAATTGGAGAGAAGGAGTGGTATTTCTATGTGCCAAGAGATAGAAAGTATAGAAATGGAGATAGGCCAAATAGGGTTACAACATCAGGGTATTGGAAGGCTACTGGAGCTGATAGAATGATTAGAACGGAGAATTCGCGGTCCATTGGCCTGAAAAAGACATTGGTTTTCTACTCAGGGAAGGCTCCTAAAGGCATAAGAAGTAGTTGGATTATGAATGAATATCGTCTTCCACATCATGAAACTGAACGCCTACAAAAGGTATATATATATATCACAACCTTAGCTTTCATTATTCATTCAAATGTGTTCGTTTCACAGGCACATGAGGTCAATTCCGATTACAACTAATATGTAGTATTTTCAGGCAGAAATTTCACTTTGTCGTGTCTATAAAAGAGCTGGAGTGGA</genome_strand>
        <mrna_strand>AAAGTTATACTATCTTTTTTTTTTTTATGGCAATTGTCCCTTTTATTACTACAAACATGAGTCAATCCCAACAACAACATCAACAACAACAAGATGATGATGATAACAACAACATCAACAACACTATTAAAGGAGATGATAATGATGATGACGATGATCATGAACACGACATGGTCATGCCTGGTTTTCGATTTCATCCTACTGAGGAAGAGCTTGTAG-AGTTTTATCTTCGCCGTAAGGTTGAAGGAAAACGTTTTAATGTGGAACTCATCACTTTTCTTGATCTTTATCGTTATGACCCTTGGGAGCTTCCTG................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGCAGCAATTGGAGAGAAGGAGTGGTATTTCTATGT-CCAAGAGATAGAAAGTATAGAAATGGAGATAGGCCAAATAGGGTTACAACATCAGGGTATTGGAAGGCTACTGGAGCTGATAGAATGATTAGAACGGAGAATTCGCGGTCCATTGGCCTGAAAAAGACATTGGTTTTCTACTCAGGGAAGGCTCCTAAAGGCATAAGAAGTAGTTGGATTATGAATGAATATCGTCTTCCACATCATGAAACTGAACGCCTACAAAAG..........................................................................................................GCAGAAATTTCACTTTGTCGTGTCTATAAAAGAGCTGGAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298798" ref_strand="+" ref_description="SGN-E298798 [cLET-44-E16]">
      <seq>aaagttatactatcttttgtttttttatggcaattggcccttttattactacaaacatgagtcaatcccaacaacaacatcaacaacaacaagatgatgatgataacaacaacatcaacaacactattaaaggagatgataatgatgatgacgatgatcatgaacacgacatggtcatgcctggttttcgatttcatcctactgaggaagagcttgtagagttttatcttcgccgtaaggttgaaggaaaacgttttaatgtggaactcatcacttttcttgatctttatcgttatgacccttgggagcttcctgctttggcagcaattggagagaaggagtggtatttctatgtccaagagatagaaagtatagaaatggagataggccaaatagggttacaacatcagggtattggaaggctactggagctgatagaatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="83647" stop="82218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83347" g_stop="83033" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83032" i_stop="82649" i_length="384">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82648" g_stop="82518" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="445" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E298798" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83347" e_stop="83033"/>
          <exon e_start="82648" e_stop="82518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTATACTATCTTTT-TTTTTTTATGGCAATTGTCCCTTTTATTACTACAAACATGAGTCAATCCCAACAACAACATCAACAACAACAAGATGATGATGATAACAACAACATCAACAACACTATTAAAGGAGATGATAATGATGATGACGATGATCATGAACACGACATGGTCATGCCTGGTTTTCGATTTCATCCTACTGAGGAAGAGCTTGTAGTAGTTTTATCTTCGCCGTAAGGTTGAAGGAAAACGTTTTAATGTGGAACTCATCACTTTTCTTGATCTTTATCGTTATGACCCTTGGGAGCTTCCTGGTATATACTACTATTCATTTTTACACTCTTTCAATTTCTTTCCTTTCTACGTAATACAAGCAGATTCAGAATTTAAATTTTAACACAAAGTTCCAGTCTTTTTTATTGTGAGTTCATAATTCAATGATTACTATAATCTATATCAATTTCTATACTAAAAATGTTGGTTTTAAATTGAACTTGTTGAACAAATTGTGAACAGTGGATTCATCTGTACTCAATACTTTGTGATGCAGATCATAATTATTCTTAAAAATATTAATTTTGAACCCTAGATCCGCCTCTGCTTTACTTTTGTGTGCTTTACCTAGCACATAATTTGGATTCCATTGAGTTTTATTTTTGGAAGTTTATTCTATATGTATAAGTTTGTTTGGTTCATAGCTTTGGCAGCAATTGGAGAGAAGGAGTGGTATTTCTATGTGCCAAGAGATAGAAAGTATAGAAATGGAGATAGGCCAAATAGGGTTACAACATCAGGGTATTGGAAGGCTACTGGAGCTGATAGAATGATT</genome_strand>
        <mrna_strand>AAAGTTATACTATCTTTTGTTTTTTTATGGCAATTGGCCCTTTTATTACTACAAACATGAGTCAATCCCAACAACAACATCAACAACAACAAGATGATGATGATAACAACAACATCAACAACACTATTAAAGGAGATGATAATGATGATGACGATGATCATGAACACGACATGGTCATGCCTGGTTTTCGATTTCATCCTACTGAGGAAGAGCTTGTAG-AGTTTTATCTTCGCCGTAAGGTTGAAGGAAAACGTTTTAATGTGGAACTCATCACTTTTCTTGATCTTTATCGTTATGACCCTTGGGAGCTTCCTG................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGCAGCAATTGGAGAGAAGGAGTGGTATTTCTATGT-CCAAGAGATAGAAAGTATAGAAATGGAGATAGGCCAAATAGGGTTACAACATCAGGGTATTGGAAGGCTACTGGAGCTGATAGAATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620682" ref_strand="+" ref_description="SGN-E620682 [71386]">
      <seq>cggtttgttacgcaattccagcaatgtctaccgaaaaaccaccggtttgtgtcaccggagccaacggattcatcggttcatgggtggttcagacgctcctcaaccgtggctacaccaccatccacgccgccatcttacccggttccgatccttcgcacctccactctctcgccggcgcatctaaccccggtgtgcgaatattggttcaccgaagtcaacatccttggacgccgatgcagtctccagagcaatagaaggatgcggcggcgggcggggttttccaccgtggcgtcgccggtgtacgctagaggatccggtggacccgcagaaggagctggttgagcctgccgtacagggtacgatcaatgtgctcacggcggcgaagaggtttaatgttcggcgcgtggtgctcacttcctccatttccgccatggttcccaatcctggttggtcggaaaataaggtcttcgatgagtcgtcgtggactgatcttgagtactgcaagtctcgccagaaatggtacccaggtctcaaagacacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="96615" stop="99603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96915" g_stop="97423" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97424" i_stop="99274" i_length="1851">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.714" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99275" g_stop="99303" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="544" r_length="30" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E620682" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96915" e_stop="97423"/>
          <exon e_start="99275" e_stop="99303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTTACGCAATTCCAGCAATGTCTACCGAAAAACCACCGGTTTGCGTCACCGGAGCCAACGGATTCATTGGTTCATGGGTGGTTCAGACGCTCCTCAACCGCGGCTACACCGCCATTTACGCCGCCATCTTCCCCGGTTCCGATCCTTCGCACCTCCACTCTCTCGCCGGTGCGTCTAACCCCGGCGTGCGAATATTGGTTCA-CGAAGTCAACATCCTT-GACGCTGATGCGGTCTCTAGGGCAATTGAGGGATGCGGTGGC-GGCGGCGTCTTCCA-CGTGGCGTCGCC-GTGTACGCTAGAGGATCCGGTGGACCCGCAGAAGGAGCTGGTGGGGCCTGCCGTACAGGGTACAATCAATGTGCTCACGGCGGCGAAGTTGTATAATGTTCGGCGCGTGGTGCTCACTTCCTCTATTTCGGCCATGGTCCCCAATCCTGGTTGGCCGGAAAACAAGGTCTTCGATGAGTTGTCGTGGACTGATCTTGACTACTGCAAGTCCCGCCAGGTGTCATTCTCTCACCAATATACACGTGATATCTATATTAATTTATTTTTCTTAAGCTCACCTAATTCATCTTAGGATTACTTTGAAATTTAATAACTATCTCCGTCTCATTTGAAATTTTATTTTTTATGGTAAATTTTTCATATATATTATAACCATTTTTAATTATCAATTATGGTGAATGAATTATATTATTTTAAAAGTAGTTTATAAATATATATATTTAATTTAAAAAAATATTAAAAATTTTATGCGTAAAGTTTGATTCTTAAAACATAAAAGGTGTCATATATTTAGGGACAACGAGTTCTAAATGAACTTTGTGAATTGTAATTAGGTGCTATTAACAACAATTAACACGATTGCCACACGGATGGTTAGTGTAGTTTACATTCTCCGTGTAATTAGTAGCTATGTACTCTGTGTAATTAGTAGCTATGTACTCTGTGTGCATAAAATGCTCATCCTTAGACCGTGATAAAGATTGTTGCAGCTGCGAATCACCTAATCTTAAAAAAGAAAAAAAAACACGTTTGACTTTAGCCAAAGTAATTGACATTCCAATAGAGGAACATTACTATTTTCTTTTTGGTAGAAAAAGATGAGTTCCATTAATTAAAATAAAATAGTAGAGGGAGTAGATGGCCCTATTCTAGAAGTACAAAGAGAGGTTAGTGGCTTTGTAGGGTGAGATGCATTACATGCCTCACTAGTTAGACCATCAGTTGGTAAGTTACAAAAAGTTGTTTGTTGACAAAATGTGGTGCCTAGACTATCCGTTTCGACCATCGATTCTGTAAAAGGGGGTGGGCTATCAAAAAGTGTTATTGTAGCCAAAGCTCCAGTGTTTCATAGACTTGTCGAAGTGCAGACCTGCAATCAAGTAAAATATATTACTAGCATATTTTGCATTGGAAGATGATAGCAATGTGATTACCTCTTCTGCATCAATTTCCACTTGAACTGAAGATAGGTTCACAAGTATAGCTAAGCTTAGGCCATGGAATAGACCCTTTAGTTCAGCTTCAGTGATAGTAGTATATGGAATATGCATACAGTAGCCTAGTATCCAATGACCATCTGTGGTCCTATAAAACTCCTCCTATGCCTCCCCTATCCAACATATTTGTAAAGGCCCCATCAGTATTGAGTTTATAATAATTTGGTTTCGGGGGTATCTGCTTGAGTTGTAATTGGGTTCTAGGCACCTTTCCAGTGGATCCCCCCAGCCAAAAAATGATATTATGTGGCTTGTTGAGTAGCCCGTGTACATGAAATAGAAAGTTTTTTATTATTAAAGAGATTATCGTTCCTTGTTAACCAAATATGCCACACGTAGTAGGGAATTAAAGTTCCAGCTGAAGATGAGGGATTAATTATAATAATTAAAAGAACACTACCTTAGCTTTAGGGGATTAGTACTCATTTGACTCGTACAATGAGAATTCGACTCCACGAGAGATTGAACAAAAGGCTTTTTAATTAGCCTATATCGTGCGTGTACCAATTGAACTATTTTGGGTAAGTGAGAATCAACATGTTAAAACTTCTTATTTCATAGCTTTAGGCTTATATTGAGATTACTGCTTGTATAATCCCACTACTCTAATAATGTTGTATAATCCAATATTGTTGAGTGATCTACTTAATTATTTACCTTGTCTAAATATATGGACACTTTCTATTTGATTTCCTTGACTTCTAAATTTACTTTTATTTTAAACAAAGTTGCAAGGATTCAAAACTTACCGTTGCTGATTCCCCCATTGACATATAGTATGATATAATTACCTCTCCATGTATGACAAAGAGCTCTTAAACATTATAAATCATAATTGAGTTCAATGACAGAAATGGTACCCA-GTCTCAAAGACACTTGC</genome_strand>
        <mrna_strand>CGGTTTGTTACGCAATTCCAGCAATGTCTACCGAAAAACCACCGGTTTGTGTCACCGGAGCCAACGGATTCATCGGTTCATGGGTGGTTCAGACGCTCCTCAACCGTGGCTACACCACCATCCACGCCGCCATCTTACCCGGTTCCGATCCTTCGCACCTCCACTCTCTCGCCGGCGCATCTAACCCCGGTGTGCGAATATTGGTTCACCGAAGTCAACATCCTTGGACGCCGATGCAGTCTCCAGAGCAATAGAAGGATGCGGCGGCGGGCGGGGTTTTCCACCGTGGCGTCGCCGGTGTACGCTAGAGGATCCGGTGGACCCGCAGAAGGAGCTGGTTGAGCCTGCCGTACAGGGTACGATCAATGTGCTCACGGCGGCGAAGAGGTTTAATGTTCGGCGCGTGGTGCTCACTTCCTCCATTTCCGCCATGGTTCCCAATCCTGGTTGGTCGGAAAATAAGGTCTTCGATGAGTCGTCGTGGACTGATCTTGAGTACTGCAAGTCTCGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTACCCAGGTCTCAAAGACACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436851" ref_strand="+" ref_description="SGN-E436851 [cSTA-1-I20]">
      <seq>attccagcaatgtctaccgaaaaaccaccggtttgcgtcaccggagccaacggattcatcggttcatgggtggttcagacgctcctcaaccgcggctacaccaccatccacgccgccatcttacccggttccgatccttcgcacctccactctctcgccggcgcatctaaccccggcgtgcgaatattggttcacgaagtcaacatccttgacgccgatgcagtctccagagcaatagcangatgcggcggcggcggggttttccacgtggcgtcgccgtgtacgctagaggatccggtggacccgcagaaagagctggttgagcctgccgtacagggtacgatcaatgtgctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="96629" stop="97584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96929" g_stop="97284" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E436851" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96929" e_stop="97284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCAGCAATGTCTACCGAAAAACCACCGGTTTGCGTCACCGGAGCCAACGGATTCATTGGTTCATGGGTGGTTCAGACGCTCCTCAACCGCGGCTACACCGCCATTTACGCCGCCATCTTCCCCGGTTCCGATCCTTCGCACCTCCACTCTCTCGCCGGTGCGTCTAACCCCGGCGTGCGAATATTGGTTCACGAAGTCAACATCCTTGACGCTGATGCGGTCTCTAGGGCAATTGAGGGATGCGGTGGCGGCGGCGTCTTCCACGTGGCGTCGCCGTGTACGCTAGAGGATCCGGTGGACCCGCAGAAGGAGCTGGTGGGGCCTGCCGTACAGGGTACAATCAATGTGCTCAC</genome_strand>
        <mrna_strand>ATTCCAGCAATGTCTACCGAAAAACCACCGGTTTGCGTCACCGGAGCCAACGGATTCATCGGTTCATGGGTGGTTCAGACGCTCCTCAACCGCGGCTACACCACCATCCACGCCGCCATCTTACCCGGTTCCGATCCTTCGCACCTCCACTCTCTCGCCGGCGCATCTAACCCCGGCGTGCGAATATTGGTTCACGAAGTCAACATCCTTGACGCCGATGCAGTCTCCAGAGCAATAGCANGATGCGGCGGCGGCGGGGTTTTCCACGTGGCGTCGCCGTGTACGCTAGAGGATCCGGTGGACCCGCAGAAAGAGCTGGTTGAGCCTGCCGTACAGGGTACGATCAATGTGCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E564319" ref_strand="+" ref_description="SGN-E564319 [2568]">
      <seq>cccggtttgcgtcaccggagccaacggattcatcggttcatgggtggttcagacgctcctcaaccgcggctacaccaccatccacgccgccatcttccccggtaccgatccttcgcacctccactctctcgccggcgcatctaaccccggcgtgcgaatattggttcacgaagtcaacatccttgacgccgatgcagtctccagagcaatagcaggatgcggcggcggcggggttttccacgtggcgtcgccgtgtacgctagaggatccggtggacccgcagaaggagctggttgagccggccgtacagggtacgatcaatgtgctcacggcggcgaagaggtttaatgttcggcgcgtggtgctcacttcctccatttccgccatggttcccaatcctggttggccggaaaataaggtgttcgatgagtcgtcgtggactgatcttgactactgcaagtctcgccagaaatggtacccagtctcaaaagacacttgctgagcaaggctgcatgggagtttgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="96656" stop="99629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96955" g_stop="97423" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97424" i_stop="99274" i_length="1851">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.714" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99275" g_stop="99329" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="526" r_length="57" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E564319" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96955" e_stop="97423"/>
          <exon e_start="99275" e_stop="99329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGTTTGCGTCACCGGAGCCAACGGATTCATTGGTTCATGGGTGGTTCAGACGCTCCTCAACCGCGGCTACACCGCCATTTACGCCGCCATCTTCCCCGGTTCCGATCCTTCGCACCTCCACTCTCTCGCCGGTGCGTCTAACCCCGGCGTGCGAATATTGGTTCACGAAGTCAACATCCTTGACGCTGATGCGGTCTCTAGGGCAATTGAGGGATGCGGTGGCGGCGGCGTCTTCCACGTGGCGTCGCCGTGTACGCTAGAGGATCCGGTGGACCCGCAGAAGGAGCTGGTGGGGCCTGCCGTACAGGGTACAATCAATGTGCTCACGGCGGCGAAGTTGTATAATGTTCGGCGCGTGGTGCTCACTTCCTCTATTTCGGCCATGGTCCCCAATCCTGGTTGGCCGGAAAACAAGGTCTTCGATGAGTTGTCGTGGACTGATCTTGACTACTGCAAGTCCCGCCAGGTGTCATTCTCTCACCAATATACACGTGATATCTATATTAATTTATTTTTCTTAAGCTCACCTAATTCATCTTAGGATTACTTTGAAATTTAATAACTATCTCCGTCTCATTTGAAATTTTATTTTTTATGGTAAATTTTTCATATATATTATAACCATTTTTAATTATCAATTATGGTGAATGAATTATATTATTTTAAAAGTAGTTTATAAATATATATATTTAATTTAAAAAAATATTAAAAATTTTATGCGTAAAGTTTGATTCTTAAAACATAAAAGGTGTCATATATTTAGGGACAACGAGTTCTAAATGAACTTTGTGAATTGTAATTAGGTGCTATTAACAACAATTAACACGATTGCCACACGGATGGTTAGTGTAGTTTACATTCTCCGTGTAATTAGTAGCTATGTACTCTGTGTAATTAGTAGCTATGTACTCTGTGTGCATAAAATGCTCATCCTTAGACCGTGATAAAGATTGTTGCAGCTGCGAATCACCTAATCTTAAAAAAGAAAAAAAAACACGTTTGACTTTAGCCAAAGTAATTGACATTCCAATAGAGGAACATTACTATTTTCTTTTTGGTAGAAAAAGATGAGTTCCATTAATTAAAATAAAATAGTAGAGGGAGTAGATGGCCCTATTCTAGAAGTACAAAGAGAGGTTAGTGGCTTTGTAGGGTGAGATGCATTACATGCCTCACTAGTTAGACCATCAGTTGGTAAGTTACAAAAAGTTGTTTGTTGACAAAATGTGGTGCCTAGACTATCCGTTTCGACCATCGATTCTGTAAAAGGGGGTGGGCTATCAAAAAGTGTTATTGTAGCCAAAGCTCCAGTGTTTCATAGACTTGTCGAAGTGCAGACCTGCAATCAAGTAAAATATATTACTAGCATATTTTGCATTGGAAGATGATAGCAATGTGATTACCTCTTCTGCATCAATTTCCACTTGAACTGAAGATAGGTTCACAAGTATAGCTAAGCTTAGGCCATGGAATAGACCCTTTAGTTCAGCTTCAGTGATAGTAGTATATGGAATATGCATACAGTAGCCTAGTATCCAATGACCATCTGTGGTCCTATAAAACTCCTCCTATGCCTCCCCTATCCAACATATTTGTAAAGGCCCCATCAGTATTGAGTTTATAATAATTTGGTTTCGGGGGTATCTGCTTGAGTTGTAATTGGGTTCTAGGCACCTTTCCAGTGGATCCCCCCAGCCAAAAAATGATATTATGTGGCTTGTTGAGTAGCCCGTGTACATGAAATAGAAAGTTTTTTATTATTAAAGAGATTATCGTTCCTTGTTAACCAAATATGCCACACGTAGTAGGGAATTAAAGTTCCAGCTGAAGATGAGGGATTAATTATAATAATTAAAAGAACACTACCTTAGCTTTAGGGGATTAGTACTCATTTGACTCGTACAATGAGAATTCGACTCCACGAGAGATTGAACAAAAGGCTTTTTAATTAGCCTATATCGTGCGTGTACCAATTGAACTATTTTGGGTAAGTGAGAATCAACATGTTAAAACTTCTTATTTCATAGCTTTAGGCTTATATTGAGATTACTGCTTGTATAATCCCACTACTCTAATAATGTTGTATAATCCAATATTGTTGAGTGATCTACTTAATTATTTACCTTGTCTAAATATATGGACACTTTCTATTTGATTTCCTTGACTTCTAAATTTACTTTTATTTTAAACAAAGTTGCAAGGATTCAAAACTTACCGTTGCTGATTCCCCCATTGACATATAGTATGATATAATTACCTCTCCATGTATGACAAAGAGCTCTTAAACATTATAAATCATAATTGAGTTCAATGACAGAAATGGTACCCAGTCTC-AAAGACACTTGCTGAG-AAGGCTGCATGGGAATTTGCGG</genome_strand>
        <mrna_strand>CCCGGTTTGCGTCACCGGAGCCAACGGATTCATCGGTTCATGGGTGGTTCAGACGCTCCTCAACCGCGGCTACACCACCATCCACGCCGCCATCTTCCCCGGTACCGATCCTTCGCACCTCCACTCTCTCGCCGGCGCATCTAACCCCGGCGTGCGAATATTGGTTCACGAAGTCAACATCCTTGACGCCGATGCAGTCTCCAGAGCAATAGCAGGATGCGGCGGCGGCGGGGTTTTCCACGTGGCGTCGCCGTGTACGCTAGAGGATCCGGTGGACCCGCAGAAGGAGCTGGTTGAGCCGGCCGTACAGGGTACGATCAATGTGCTCACGGCGGCGAAGAGGTTTAATGTTCGGCGCGTGGTGCTCACTTCCTCCATTTCCGCCATGGTTCCCAATCCTGGTTGGCCGGAAAATAAGGTGTTCGATGAGTCGTCGTGGACTGATCTTGACTACTGCAAGTCTCGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTACCCAGTCTCAAAAGACACTTGCTGAGCAAGGCTGCATGGGAGTTTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E482090" ref_strand="+" ref_description="SGN-E482090 [cSTD-20-H14]">
      <seq>gtttgcgtcaccggagccaacggattcatcggttcatgggtggttcagacgctcctcaaccgcggctacaccaccatccacgccgccatcttacccggttccgatccttcgcacctccactctctcgccggcgcatctaaccccggcgtgcgaatattggttcacgaagtcaacatccttgacgccgatgcagtctccagagcaatagcaggatgcggcggcggcggggttttccacgtggcgtcgccgtgtacgctagaggatccggtggacccgcagaaggagctggttgagcctgccgtacagggtacgatcaatgtgctcacggcggcgaagaggtttaatgttcggcgcgtggtgctcacttcctccatttccgccatggttcccaatcctggttggccggaaaataaggtgttcgatgagtcgtcgtggactgatcttgagtactgcaagtctcgccagaaatggtacccagtctcaaagacacttgctgagaaggctgcatgggagtttgcggagaagaatggattggatgtggtagcaattaatccagctacatgtcttggtcaacttctgcaacctggactgaatgcaagctgcgctgttttgcaacaactgcttcagggatcaacagatacccaagagtatcattggttaggggctgtgcacgtcaaagatgtggcagcggcacagattttgttatttgagagccctcgtgcttctggaagatactatgtaccatgggcatttacagtttggtgattttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="96659" stop="99884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96959" g_stop="97423" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97424" i_stop="99274" i_length="1851">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.714" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99275" g_stop="99584" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="773" r_length="308" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E482090" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96959" e_stop="97423"/>
          <exon e_start="99275" e_stop="99584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCGTCACCGGAGCCAACGGATTCATTGGTTCATGGGTGGTTCAGACGCTCCTCAACCGCGGCTACACCGCCATTTACGCCGCCATCTTCCCCGGTTCCGATCCTTCGCACCTCCACTCTCTCGCCGGTGCGTCTAACCCCGGCGTGCGAATATTGGTTCACGAAGTCAACATCCTTGACGCTGATGCGGTCTCTAGGGCAATTGAGGGATGCGGTGGCGGCGGCGTCTTCCACGTGGCGTCGCCGTGTACGCTAGAGGATCCGGTGGACCCGCAGAAGGAGCTGGTGGGGCCTGCCGTACAGGGTACAATCAATGTGCTCACGGCGGCGAAGTTGTATAATGTTCGGCGCGTGGTGCTCACTTCCTCTATTTCGGCCATGGTCCCCAATCCTGGTTGGCCGGAAAACAAGGTCTTCGATGAGTTGTCGTGGACTGATCTTGACTACTGCAAGTCCCGCCAGGTGTCATTCTCTCACCAATATACACGTGATATCTATATTAATTTATTTTTCTTAAGCTCACCTAATTCATCTTAGGATTACTTTGAAATTTAATAACTATCTCCGTCTCATTTGAAATTTTATTTTTTATGGTAAATTTTTCATATATATTATAACCATTTTTAATTATCAATTATGGTGAATGAATTATATTATTTTAAAAGTAGTTTATAAATATATATATTTAATTTAAAAAAATATTAAAAATTTTATGCGTAAAGTTTGATTCTTAAAACATAAAAGGTGTCATATATTTAGGGACAACGAGTTCTAAATGAACTTTGTGAATTGTAATTAGGTGCTATTAACAACAATTAACACGATTGCCACACGGATGGTTAGTGTAGTTTACATTCTCCGTGTAATTAGTAGCTATGTACTCTGTGTAATTAGTAGCTATGTACTCTGTGTGCATAAAATGCTCATCCTTAGACCGTGATAAAGATTGTTGCAGCTGCGAATCACCTAATCTTAAAAAAGAAAAAAAAACACGTTTGACTTTAGCCAAAGTAATTGACATTCCAATAGAGGAACATTACTATTTTCTTTTTGGTAGAAAAAGATGAGTTCCATTAATTAAAATAAAATAGTAGAGGGAGTAGATGGCCCTATTCTAGAAGTACAAAGAGAGGTTAGTGGCTTTGTAGGGTGAGATGCATTACATGCCTCACTAGTTAGACCATCAGTTGGTAAGTTACAAAAAGTTGTTTGTTGACAAAATGTGGTGCCTAGACTATCCGTTTCGACCATCGATTCTGTAAAAGGGGGTGGGCTATCAAAAAGTGTTATTGTAGCCAAAGCTCCAGTGTTTCATAGACTTGTCGAAGTGCAGACCTGCAATCAAGTAAAATATATTACTAGCATATTTTGCATTGGAAGATGATAGCAATGTGATTACCTCTTCTGCATCAATTTCCACTTGAACTGAAGATAGGTTCACAAGTATAGCTAAGCTTAGGCCATGGAATAGACCCTTTAGTTCAGCTTCAGTGATAGTAGTATATGGAATATGCATACAGTAGCCTAGTATCCAATGACCATCTGTGGTCCTATAAAACTCCTCCTATGCCTCCCCTATCCAACATATTTGTAAAGGCCCCATCAGTATTGAGTTTATAATAATTTGGTTTCGGGGGTATCTGCTTGAGTTGTAATTGGGTTCTAGGCACCTTTCCAGTGGATCCCCCCAGCCAAAAAATGATATTATGTGGCTTGTTGAGTAGCCCGTGTACATGAAATAGAAAGTTTTTTATTATTAAAGAGATTATCGTTCCTTGTTAACCAAATATGCCACACGTAGTAGGGAATTAAAGTTCCAGCTGAAGATGAGGGATTAATTATAATAATTAAAAGAACACTACCTTAGCTTTAGGGGATTAGTACTCATTTGACTCGTACAATGAGAATTCGACTCCACGAGAGATTGAACAAAAGGCTTTTTAATTAGCCTATATCGTGCGTGTACCAATTGAACTATTTTGGGTAAGTGAGAATCAACATGTTAAAACTTCTTATTTCATAGCTTTAGGCTTATATTGAGATTACTGCTTGTATAATCCCACTACTCTAATAATGTTGTATAATCCAATATTGTTGAGTGATCTACTTAATTATTTACCTTGTCTAAATATATGGACACTTTCTATTTGATTTCCTTGACTTCTAAATTTACTTTTATTTTAAACAAAGTTGCAAGGATTCAAAACTTACCGTTGCTGATTCCCCCATTGACATATAGTATGATATAATTACCTCTCCATGTATGACAAAGAGCTCTTAAACATTATAAATCATAATTGAGTTCAATGACAGAAATGGTACCCAGTCTCAAAGACACTTGCTGAGAAGGCTGCATGGGAATTTGCGGAGAAGAATGGATTGGATGTGGTAGCAATTAATCCAGCTACATGTCTTGGTGAACTTCTGCAACCTGGACTGAATGCAAGCTGCGCTGTTTTGCAACAACTGCTTCAGGGATCAACAGATACCCAAGAGTATCATTGGTTAGGGGCTGTGCACGTCAAAGATGTGGCAGCGGCACAGATTTTGTTATTTGAGAGCCCCCGTGCTTCTGGAAGATACTTATGTACCAATGGCATTTACCAGTTTGGTGATTTTGCTG</genome_strand>
        <mrna_strand>GTTTGCGTCACCGGAGCCAACGGATTCATCGGTTCATGGGTGGTTCAGACGCTCCTCAACCGCGGCTACACCACCATCCACGCCGCCATCTTACCCGGTTCCGATCCTTCGCACCTCCACTCTCTCGCCGGCGCATCTAACCCCGGCGTGCGAATATTGGTTCACGAAGTCAACATCCTTGACGCCGATGCAGTCTCCAGAGCAATAGCAGGATGCGGCGGCGGCGGGGTTTTCCACGTGGCGTCGCCGTGTACGCTAGAGGATCCGGTGGACCCGCAGAAGGAGCTGGTTGAGCCTGCCGTACAGGGTACGATCAATGTGCTCACGGCGGCGAAGAGGTTTAATGTTCGGCGCGTGGTGCTCACTTCCTCCATTTCCGCCATGGTTCCCAATCCTGGTTGGCCGGAAAATAAGGTGTTCGATGAGTCGTCGTGGACTGATCTTGAGTACTGCAAGTCTCGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTACCCAGTCTCAAAGACACTTGCTGAGAAGGCTGCATGGGAGTTTGCGGAGAAGAATGGATTGGATGTGGTAGCAATTAATCCAGCTACATGTCTTGGTCAACTTCTGCAACCTGGACTGAATGCAAGCTGCGCTGTTTTGCAACAACTGCTTCAGGGATCAACAGATACCCAAGAGTATCATTGGTTAGGGGCTGTGCACGTCAAAGATGTGGCAGCGGCACAGATTTTGTTATTTGAGAGCCCTCGTGCTTCTGGAAGATAC-TATGTACCATGGGCATTTA-CAGTTTGGTGATTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486064" ref_strand="+" ref_description="SGN-E486064 [cSTE-20-H14]">
      <seq>gtttgcgtcaccggagccaacggattcatcggttcatgggtggttcagacgctcctcaaccgcggctacaccaccatccacgccgccatcttacccggttccgatccttcgcacctccactctctcgccggcgcatctaaccccggcgtgcgaatattggttcacgaagtcaacatccttgacgccgatgcagtctccagagcaatagcaggatgcggcggcggcggggttttccacgtggcgtcgccgtgtacgctagaggatccggtggacccgcagaaggagctggttgagcctgccgtacagggtacgatcaatgtgctcacggcggcgaagaggtttaatgttcggcgcgtggtgctcacttcctccatttccgccatggttcccaatcctggttggccggaaaataaggtgttcgatgagtcgtcgtggactgatcttgagtactgcaagtctcgccagaaatggtacccagtctcaaagacacttgctgagaaggctgcatgggagtttgcggagaagaatggattggatgtggtagccattaatccagctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="96659" stop="99669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96959" g_stop="97423" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97424" i_stop="99274" i_length="1851">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.714" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99275" g_stop="99369" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="560" r_length="95" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E486064" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96959" e_stop="97423"/>
          <exon e_start="99275" e_stop="99369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCGTCACCGGAGCCAACGGATTCATTGGTTCATGGGTGGTTCAGACGCTCCTCAACCGCGGCTACACCGCCATTTACGCCGCCATCTTCCCCGGTTCCGATCCTTCGCACCTCCACTCTCTCGCCGGTGCGTCTAACCCCGGCGTGCGAATATTGGTTCACGAAGTCAACATCCTTGACGCTGATGCGGTCTCTAGGGCAATTGAGGGATGCGGTGGCGGCGGCGTCTTCCACGTGGCGTCGCCGTGTACGCTAGAGGATCCGGTGGACCCGCAGAAGGAGCTGGTGGGGCCTGCCGTACAGGGTACAATCAATGTGCTCACGGCGGCGAAGTTGTATAATGTTCGGCGCGTGGTGCTCACTTCCTCTATTTCGGCCATGGTCCCCAATCCTGGTTGGCCGGAAAACAAGGTCTTCGATGAGTTGTCGTGGACTGATCTTGACTACTGCAAGTCCCGCCAGGTGTCATTCTCTCACCAATATACACGTGATATCTATATTAATTTATTTTTCTTAAGCTCACCTAATTCATCTTAGGATTACTTTGAAATTTAATAACTATCTCCGTCTCATTTGAAATTTTATTTTTTATGGTAAATTTTTCATATATATTATAACCATTTTTAATTATCAATTATGGTGAATGAATTATATTATTTTAAAAGTAGTTTATAAATATATATATTTAATTTAAAAAAATATTAAAAATTTTATGCGTAAAGTTTGATTCTTAAAACATAAAAGGTGTCATATATTTAGGGACAACGAGTTCTAAATGAACTTTGTGAATTGTAATTAGGTGCTATTAACAACAATTAACACGATTGCCACACGGATGGTTAGTGTAGTTTACATTCTCCGTGTAATTAGTAGCTATGTACTCTGTGTAATTAGTAGCTATGTACTCTGTGTGCATAAAATGCTCATCCTTAGACCGTGATAAAGATTGTTGCAGCTGCGAATCACCTAATCTTAAAAAAGAAAAAAAAACACGTTTGACTTTAGCCAAAGTAATTGACATTCCAATAGAGGAACATTACTATTTTCTTTTTGGTAGAAAAAGATGAGTTCCATTAATTAAAATAAAATAGTAGAGGGAGTAGATGGCCCTATTCTAGAAGTACAAAGAGAGGTTAGTGGCTTTGTAGGGTGAGATGCATTACATGCCTCACTAGTTAGACCATCAGTTGGTAAGTTACAAAAAGTTGTTTGTTGACAAAATGTGGTGCCTAGACTATCCGTTTCGACCATCGATTCTGTAAAAGGGGGTGGGCTATCAAAAAGTGTTATTGTAGCCAAAGCTCCAGTGTTTCATAGACTTGTCGAAGTGCAGACCTGCAATCAAGTAAAATATATTACTAGCATATTTTGCATTGGAAGATGATAGCAATGTGATTACCTCTTCTGCATCAATTTCCACTTGAACTGAAGATAGGTTCACAAGTATAGCTAAGCTTAGGCCATGGAATAGACCCTTTAGTTCAGCTTCAGTGATAGTAGTATATGGAATATGCATACAGTAGCCTAGTATCCAATGACCATCTGTGGTCCTATAAAACTCCTCCTATGCCTCCCCTATCCAACATATTTGTAAAGGCCCCATCAGTATTGAGTTTATAATAATTTGGTTTCGGGGGTATCTGCTTGAGTTGTAATTGGGTTCTAGGCACCTTTCCAGTGGATCCCCCCAGCCAAAAAATGATATTATGTGGCTTGTTGAGTAGCCCGTGTACATGAAATAGAAAGTTTTTTATTATTAAAGAGATTATCGTTCCTTGTTAACCAAATATGCCACACGTAGTAGGGAATTAAAGTTCCAGCTGAAGATGAGGGATTAATTATAATAATTAAAAGAACACTACCTTAGCTTTAGGGGATTAGTACTCATTTGACTCGTACAATGAGAATTCGACTCCACGAGAGATTGAACAAAAGGCTTTTTAATTAGCCTATATCGTGCGTGTACCAATTGAACTATTTTGGGTAAGTGAGAATCAACATGTTAAAACTTCTTATTTCATAGCTTTAGGCTTATATTGAGATTACTGCTTGTATAATCCCACTACTCTAATAATGTTGTATAATCCAATATTGTTGAGTGATCTACTTAATTATTTACCTTGTCTAAATATATGGACACTTTCTATTTGATTTCCTTGACTTCTAAATTTACTTTTATTTTAAACAAAGTTGCAAGGATTCAAAACTTACCGTTGCTGATTCCCCCATTGACATATAGTATGATATAATTACCTCTCCATGTATGACAAAGAGCTCTTAAACATTATAAATCATAATTGAGTTCAATGACAGAAATGGTACCCAGTCTCAAAGACACTTGCTGAGAAGGCTGCATGGGAATTTGCGGAGAAGAATGGATTGGATGTGGTAGCAATTAATCCAGCTAC</genome_strand>
        <mrna_strand>GTTTGCGTCACCGGAGCCAACGGATTCATCGGTTCATGGGTGGTTCAGACGCTCCTCAACCGCGGCTACACCACCATCCACGCCGCCATCTTACCCGGTTCCGATCCTTCGCACCTCCACTCTCTCGCCGGCGCATCTAACCCCGGCGTGCGAATATTGGTTCACGAAGTCAACATCCTTGACGCCGATGCAGTCTCCAGAGCAATAGCAGGATGCGGCGGCGGCGGGGTTTTCCACGTGGCGTCGCCGTGTACGCTAGAGGATCCGGTGGACCCGCAGAAGGAGCTGGTTGAGCCTGCCGTACAGGGTACGATCAATGTGCTCACGGCGGCGAAGAGGTTTAATGTTCGGCGCGTGGTGCTCACTTCCTCCATTTCCGCCATGGTTCCCAATCCTGGTTGGCCGGAAAATAAGGTGTTCGATGAGTCGTCGTGGACTGATCTTGAGTACTGCAAGTCTCGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTACCCAGTCTCAAAGACACTTGCTGAGAAGGCTGCATGGGAGTTTGCGGAGAAGAATGGATTGGATGTGGTAGCCATTAATCCAGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347762" ref_strand="+" ref_description="SGN-E347762 [cTOF-26-O12]">
      <seq>aacaatctaacattgtactttgatctaacaacccccacccccttctcaaccatatatattcatctatattttccctcattttgaggaacaaaactaaaataaaagctctcacatatccttttttttggtggctcaagatgagtaatcttacttctagtcctgcaccttgtagtagatcatggtcaattagtgaggactcattgagaagatatgtgttctatgcaagtgaaaattgcatccaggagttgttatcagcttcagattcaaaaagctgtaacgatggctggaaaatactcggcgtagataacggcgttgagatagctaaacgccgttcaggttcccttcacactttccgtagccgttggttactcaaatctgtttctcctcaacaattcatcactgtagctaacgccattgatgctgcaaggcaatgggacggggacttagtagaagcaagatacataaaggatttggaagataatttgagtattatacgtcttagatttggggaaaattcgaagcctttattcagaaacagagaattcattgtctatgaacgtcgtgaaactatggatgatggaacactggtagtagcagtagcttcacttccaaaagagatagcagcaggtttgcacccaaagcaaaacaatgcaataagaggtttattgttgcaatctggatgggttgttgagaaaattgatcatgattcttgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="103139" stop="104689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103439" g_stop="103619" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103620" i_stop="103704" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103705" g_stop="103951" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="428" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103952" i_stop="104019" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104020" g_stop="104178" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="587" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104179" i_stop="104260" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104261" g_stop="104389" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="716" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E347762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103439" e_stop="103619"/>
          <exon e_start="103705" e_stop="103951"/>
          <exon e_start="104020" e_stop="104178"/>
          <exon e_start="104261" e_stop="104389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATCTAACATTGTACTTTGATCTAACAACCCCCACCCCCTTCTCAACCATATATATTCATCTATATTTTCCCTCATTTTGAGGAACAAAACTAAAATAAAAGCTCTCACATATCCTTTTTTTTGGTGGCTCAAGATGAGTAATCTTACTTCTAGTCCTGCACCTTGTAGTAGATCATGGTAAATTATACTACTATACTTTTTTTATTTATTTATATCGTTCATTCTATTTTTCAGATTGTCATATCAGACTCGTTAATTACAGGTCAATTAGTGAGGACTCATTGAGAAGATATGTGTTCTATGCAAGTGAAAATTGCATCCAGGAGTTGTTATCAGCTTCAGATTCAAAAAGCTGTAACGATGGCTGGAAAATACTCGGCGTAGATAACGGCGTTGAGATAGCTAAACGCCGTTCAGGTTCCCTTCACACTTTCCGTAGCCGTTGGTTACTCAAATCTGTTTCTCCTCAACAATTCATCACTGTAGCTAACGCCATTGATGCTGCAAGGGTAAGTTTGAATTTAAATTATTTCTAAAATAATGATATAGAGGTGAATTGATGAAATTAAAATGACAGCAATGGGACGGGGACTTAGTAGAAGCAAGATACATAAAGGATTTGGAAGATAATTTGAGTATTATACGTCTTAGATTTGGGGAAAATTCGAAGCCTTTATTCAGAAACAGAGAATTCATTGTCTATGAACGTCGTGAAACTATGGATGATGGAACACTGGTACGTATTATTTTAAAATTGCAAGTTGATAATAAACGCACATTTGATTTTTTTTTTAAAAAAATGTTCATTAATGTTATAGGTAGTAGCAGTAGCTTCACTTCCAAAAGAGATAGCAGCAGGTTTGCACCCAAAGCAAAACAATGCAATAAGAGGTTTATTGTTGCAATCTGGATGGGTTGTTGAGAAAATTGATCATGATTCTTGCATG</genome_strand>
        <mrna_strand>AACAATCTAACATTGTACTTTGATCTAACAACCCCCACCCCCTTCTCAACCATATATATTCATCTATATTTTCCCTCATTTTGAGGAACAAAACTAAAATAAAAGCTCTCACATATCCTTTTTTTTGGTGGCTCAAGATGAGTAATCTTACTTCTAGTCCTGCACCTTGTAGTAGATCATG.....................................................................................GTCAATTAGTGAGGACTCATTGAGAAGATATGTGTTCTATGCAAGTGAAAATTGCATCCAGGAGTTGTTATCAGCTTCAGATTCAAAAAGCTGTAACGATGGCTGGAAAATACTCGGCGTAGATAACGGCGTTGAGATAGCTAAACGCCGTTCAGGTTCCCTTCACACTTTCCGTAGCCGTTGGTTACTCAAATCTGTTTCTCCTCAACAATTCATCACTGTAGCTAACGCCATTGATGCTGCAAGG....................................................................CAATGGGACGGGGACTTAGTAGAAGCAAGATACATAAAGGATTTGGAAGATAATTTGAGTATTATACGTCTTAGATTTGGGGAAAATTCGAAGCCTTTATTCAGAAACAGAGAATTCATTGTCTATGAACGTCGTGAAACTATGGATGATGGAACACTG..................................................................................GTAGTAGCAGTAGCTTCACTTCCAAAAGAGATAGCAGCAGGTTTGCACCCAAAGCAAAACAATGCAATAAGAGGTTTATTGTTGCAATCTGGATGGGTTGTTGAGAAAATTGATCATGATTCTTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732457" ref_strand="+" ref_description="SGN-E732457 [LB02AH08]">
      <seq>cacatatccttttttttggtggctcaagatgagtaatcttacttctagtcctgcaccttgtagtagatcatggtcaattagtgaggactcattgagaagatatgtgttctatgcaagtgaaaattgcatccaggagttgttatcagcttcagattcaaaaagctgtaacgatggctggaaaatactcggcgtagataacggcgttgagatagctaaacgccgttcaggttcccttcacactttccgtagccgttggttactcaaatctgtttctcctcaacaattcatcactgtagctaacgccattgatgctgcaaggcaatgggacggggacttagtagaagcaagatacataaaggatttggaagataatttgagtattatacgtcttagatttggggaaaattcgaagcctttattcagaaacagagaattcattgtctatgaacgtcgtgaaactatggatgatggaacactggtagtagcagtagcttcacttccaaaagagatagcagcaggtttgcacccaaagcaaaacaatgcaataagaggtttattgttgcaatctggatgggttgttgagaaaattgatcatgattcttgcatggtcacttacgttgtccagttggatccagcaggatggttaccaaaatgcttcgtgaatcggttgaacacaaagttggttatgatcattgataaccttaaaaagcaagtgctttctagccctaccaatagtgatgatagtacttgatttaattactacttttgtacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="103248" stop="105150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103548" g_stop="103619" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103620" i_stop="103704" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103705" g_stop="103951" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="319" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103952" i_stop="104019" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104020" g_stop="104178" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="478" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104179" i_stop="104260" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104261" g_stop="104407" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="625" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104408" i_stop="104694" i_length="287">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104695" g_stop="104850" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="781" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E732457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103548" e_stop="103619"/>
          <exon e_start="103705" e_stop="103951"/>
          <exon e_start="104020" e_stop="104178"/>
          <exon e_start="104261" e_stop="104407"/>
          <exon e_start="104695" e_stop="104850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATATCCTTTTTTTTGGTGGCTCAAGATGAGTAATCTTACTTCTAGTCCTGCACCTTGTAGTAGATCATGGTAAATTATACTACTATACTTTTTTTATTTATTTATATCGTTCATTCTATTTTTCAGATTGTCATATCAGACTCGTTAATTACAGGTCAATTAGTGAGGACTCATTGAGAAGATATGTGTTCTATGCAAGTGAAAATTGCATCCAGGAGTTGTTATCAGCTTCAGATTCAAAAAGCTGTAACGATGGCTGGAAAATACTCGGCGTAGATAACGGCGTTGAGATAGCTAAACGCCGTTCAGGTTCCCTTCACACTTTCCGTAGCCGTTGGTTACTCAAATCTGTTTCTCCTCAACAATTCATCACTGTAGCTAACGCCATTGATGCTGCAAGGGTAAGTTTGAATTTAAATTATTTCTAAAATAATGATATAGAGGTGAATTGATGAAATTAAAATGACAGCAATGGGACGGGGACTTAGTAGAAGCAAGATACATAAAGGATTTGGAAGATAATTTGAGTATTATACGTCTTAGATTTGGGGAAAATTCGAAGCCTTTATTCAGAAACAGAGAATTCATTGTCTATGAACGTCGTGAAACTATGGATGATGGAACACTGGTACGTATTATTTTAAAATTGCAAGTTGATAATAAACGCACATTTGATTTTTTTTTTAAAAAAATGTTCATTAATGTTATAGGTAGTAGCAGTAGCTTCACTTCCAAAAGAGATAGCAGCAGGTTTGCACCCAAAGCAAAACAATGCAATAAGAGGTTTATTGTTGCAATCTGGATGGGTTGTTGAGAAAATTGATCATGATTCTTGCATGGTCACTTACGTTGTCCAGGTAATGTTATTCACATGTATCTCGATTATTTCAAATTTTGAATATTATATATTACTTCTTAAAAAAGAAAAAATATGCACAGTGTGACTCTGTCCACCAAAATTTGGATAGATAAAGAGAAATTAATTATCTGATGGAGTATTTTTCTTTCTTTTTTGTCCTTGAAACGTGAATTATAGTTTTCATTGACTTAATTGACTATAGTTTACGCGTTTATTCATATATTTTGTAATTTTATTAAATAAAAATGGAAATTAAATTATCTTTTTTGGGATGAAAATTTGCAGTTGGATCCAGCAGGATGGTTACCAAAATGCTTCGTGAATCGGTTGAACACAAAGTTGGTTATGATCATTGATAACCTTAAAAAGCAAGTGCTTTCTAGCCCTACCAATAGTGATGATAGTACTTGATTTAATTACTACTTTTGTACAAAAAAAAAA</genome_strand>
        <mrna_strand>CACATATCCTTTTTTTTGGTGGCTCAAGATGAGTAATCTTACTTCTAGTCCTGCACCTTGTAGTAGATCATG.....................................................................................GTCAATTAGTGAGGACTCATTGAGAAGATATGTGTTCTATGCAAGTGAAAATTGCATCCAGGAGTTGTTATCAGCTTCAGATTCAAAAAGCTGTAACGATGGCTGGAAAATACTCGGCGTAGATAACGGCGTTGAGATAGCTAAACGCCGTTCAGGTTCCCTTCACACTTTCCGTAGCCGTTGGTTACTCAAATCTGTTTCTCCTCAACAATTCATCACTGTAGCTAACGCCATTGATGCTGCAAGG....................................................................CAATGGGACGGGGACTTAGTAGAAGCAAGATACATAAAGGATTTGGAAGATAATTTGAGTATTATACGTCTTAGATTTGGGGAAAATTCGAAGCCTTTATTCAGAAACAGAGAATTCATTGTCTATGAACGTCGTGAAACTATGGATGATGGAACACTG..................................................................................GTAGTAGCAGTAGCTTCACTTCCAAAAGAGATAGCAGCAGGTTTGCACCCAAAGCAAAACAATGCAATAAGAGGTTTATTGTTGCAATCTGGATGGGTTGTTGAGAAAATTGATCATGATTCTTGCATGGTCACTTACGTTGTCCAG...............................................................................................................................................................................................................................................................................................TTGGATCCAGCAGGATGGTTACCAAAATGCTTCGTGAATCGGTTGAACACAAAGTTGGTTATGATCATTGATAACCTTAAAAAGCAAGTGCTTTCTAGCCCTACCAATAGTGATGATAGTACTTGATTTAATTACTACTTTTGTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339785" ref_strand="+" ref_description="SGN-E339785 [cTOE-16-H8]">
      <seq>acatatccttttttttggtggctcaagatgagtaatcttacttctagtcctgcaccttgtagtagatcatggtcaattagtgaggactcattgagaagatatgtgttctatgcaagtgaaaattgcatccaggagttgttatcagcttcagattcaaaaagctgtaacgatggctggaaaatactcggcgtagataacggcgttgagatagctaaacgccgttcaggttcccttcacactttccgtagccgttggttactcaaatctgtttctcctcaacaattcatcactgtagctaacgccattgatgctgcaaggcaatgggacggggacttagtagaagcaagatacataaaggatttggaagataatttgagtattatacgtcttagatttggggaaaattcgaagcctttattcagaaacagagaattcattgtctatgaacgtcgtgaaactatggatgatggaacactggtagtagcagtagcttcacttccaaaagagatagcaacaagtttgcacccaaagcaaaacaatgcaataagaggtttattgttgcaatctggatgggttgttgagaaaattgatcatgattcttgcatggtcacttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="103249" stop="104699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103549" g_stop="103619" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103620" i_stop="103704" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103705" g_stop="103951" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="318" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103952" i_stop="104019" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104020" g_stop="104178" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="477" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104179" i_stop="104260" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104261" g_stop="104399" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="616" r_length="139" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E339785" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103549" e_stop="103619"/>
          <exon e_start="103705" e_stop="103951"/>
          <exon e_start="104020" e_stop="104178"/>
          <exon e_start="104261" e_stop="104399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATCCTTTTTTTTGGTGGCTCAAGATGAGTAATCTTACTTCTAGTCCTGCACCTTGTAGTAGATCATGGTAAATTATACTACTATACTTTTTTTATTTATTTATATCGTTCATTCTATTTTTCAGATTGTCATATCAGACTCGTTAATTACAGGTCAATTAGTGAGGACTCATTGAGAAGATATGTGTTCTATGCAAGTGAAAATTGCATCCAGGAGTTGTTATCAGCTTCAGATTCAAAAAGCTGTAACGATGGCTGGAAAATACTCGGCGTAGATAACGGCGTTGAGATAGCTAAACGCCGTTCAGGTTCCCTTCACACTTTCCGTAGCCGTTGGTTACTCAAATCTGTTTCTCCTCAACAATTCATCACTGTAGCTAACGCCATTGATGCTGCAAGGGTAAGTTTGAATTTAAATTATTTCTAAAATAATGATATAGAGGTGAATTGATGAAATTAAAATGACAGCAATGGGACGGGGACTTAGTAGAAGCAAGATACATAAAGGATTTGGAAGATAATTTGAGTATTATACGTCTTAGATTTGGGGAAAATTCGAAGCCTTTATTCAGAAACAGAGAATTCATTGTCTATGAACGTCGTGAAACTATGGATGATGGAACACTGGTACGTATTATTTTAAAATTGCAAGTTGATAATAAACGCACATTTGATTTTTTTTTTAAAAAAATGTTCATTAATGTTATAGGTAGTAGCAGTAGCTTCACTTCCAAAAGAGATAGCAGCAGGTTTGCACCCAAAGCAAAACAATGCAATAAGAGGTTTATTGTTGCAATCTGGATGGGTTGTTGAGAAAATTGATCATGATTCTTGCATGGTCACTTACG</genome_strand>
        <mrna_strand>ACATATCCTTTTTTTTGGTGGCTCAAGATGAGTAATCTTACTTCTAGTCCTGCACCTTGTAGTAGATCATG.....................................................................................GTCAATTAGTGAGGACTCATTGAGAAGATATGTGTTCTATGCAAGTGAAAATTGCATCCAGGAGTTGTTATCAGCTTCAGATTCAAAAAGCTGTAACGATGGCTGGAAAATACTCGGCGTAGATAACGGCGTTGAGATAGCTAAACGCCGTTCAGGTTCCCTTCACACTTTCCGTAGCCGTTGGTTACTCAAATCTGTTTCTCCTCAACAATTCATCACTGTAGCTAACGCCATTGATGCTGCAAGG....................................................................CAATGGGACGGGGACTTAGTAGAAGCAAGATACATAAAGGATTTGGAAGATAATTTGAGTATTATACGTCTTAGATTTGGGGAAAATTCGAAGCCTTTATTCAGAAACAGAGAATTCATTGTCTATGAACGTCGTGAAACTATGGATGATGGAACACTG..................................................................................GTAGTAGCAGTAGCTTCACTTCCAAAAGAGATAGCAACAAGTTTGCACCCAAAGCAAAACAATGCAATAAGAGGTTTATTGTTGCAATCTGGATGGGTTGTTGAGAAAATTGATCATGATTCTTGCATGGTCACTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620199" ref_strand="+" ref_description="SGN-E620199 [70897]">
      <seq>ttgtagtagatcatggtcaattagtgaggactcattgagaagatatgtgttctatgcaagtgaaaattgcatccaagaattattatcagcttcagattcaaaaagttgtaacgatggctggaaaatacttggcgtaataacggcgttgagatatctaaacgccgttcaggttcacttcacactttccgtagccgttggttactcaaatctgtctctcctgaacaattcatcaccgtagctaacgccatcgatgctgcaaggcaatgggacggggacttagtagaagcaagatacataaaggatttggaagataatttgagtattatacgtcttagatttggggaaaattcgaagcctttattcagaaacagagaatttattgtctatgaacgtcgtgaaactatggatgatggaacactggtagtagcagtagcttcacttccaaaagagatagcagcaggtttgcacccaaagcaaaaccaatgcaataagaggtttattgtgtgcaactctggatgggttgttgagaaaattgaccatgattcttgcatggtcacttacgttgtccagtttggatccagcaggatggttaccaaaatgcttcgtgaatcggttgaacacaaaagttggttatgatcattgacaacctttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="103392" stop="105077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103605" g_stop="103619" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103620" i_stop="103704" i_length="85">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103705" g_stop="103951" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="261" r_length="246" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103952" i_stop="104019" i_length="68">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104020" g_stop="104178" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="420" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104179" i_stop="104260" i_length="82">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104261" g_stop="104407" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="571" r_length="151" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104408" i_stop="104694" i_length="287">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104695" g_stop="104777" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="655" r_length="84" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E620199" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103605" e_stop="103619"/>
          <exon e_start="103705" e_stop="103951"/>
          <exon e_start="104020" e_stop="104178"/>
          <exon e_start="104261" e_stop="104407"/>
          <exon e_start="104695" e_stop="104777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAGTAGATCATGGTAAATTATACTACTATACTTTTTTTATTTATTTATATCGTTCATTCTATTTTTCAGATTGTCATATCAGACTCGTTAATTACAGGTCAATTAGTGAGGACTCATTGAGAAGATATGTGTTCTATGCAAGTGAAAATTGCATCCAGGAGTTGTTATCAGCTTCAGATTCAAAAAGCTGTAACGATGGCTGGAAAATACTCGGCGTAGATAACGGCGTTGAGATAGCTAAACGCCGTTCAGGTTCCCTTCACACTTTCCGTAGCCGTTGGTTACTCAAATCTGTTTCTCCTCAACAATTCATCACTGTAGCTAACGCCATTGATGCTGCAAGGGTAAGTTTGAATTTAAATTATTTCTAAAATAATGATATAGAGGTGAATTGATGAAATTAAAATGACAGCAATGGGACGGGGACTTAGTAGAAGCAAGATACATAAAGGATTTGGAAGATAATTTGAGTATTATACGTCTTAGATTTGGGGAAAATTCGAAGCCTTTATTCAGAAACAGAGAATTCATTGTCTATGAACGTCGTGAAACTATGGATGATGGAACACTGGTACGTATTATTTTAAAATTGCAAGTTGATAATAAACGCACATTTGATTTTTTTTTTAAAAAAATGTTCATTAATGTTATAGGTAGTAGCAGTAGCTTCACTTCCAAAAGAGATAGCAGCAGGTTTGCACCCAAAGCAAAA-CAATGCAATAAGAGGTTTATTGT-TGCAA-TCTGGATGGGTTGTTGAGAAAATTGATCATGATTCTTGCATGGTCACTTACGTTGTCCAG-GTAATGTTATTCACATGTATCTCGATTATTTCAAATTTTGAATATTATATATTACTTCTTAAAAAAGAAAAAATATGCACAGTGTGACTCTGTCCACCAAAATTTGGATAGATAAAGAGAAATTAATTATCTGATGGAGTATTTTTCTTTCTTTTTTGTCCTTGAAACGTGAATTATAGTTTTCATTGACTTAATTGACTATAGTTTACGCGTTTATTCATATATTTTGTAATTTTATTAAATAAAAATGGAAATTAAATTATCTTTTTTGGGATGAAAATTTGCAGTTGGATCCAGCAGGATGGTTACCAAAATGCTTCGTGAATCGGTTGAACAC-AAAGTTGGTTATGATCATTGATAACCTTAAAAA</genome_strand>
        <mrna_strand>TTGTAGTAGATCATG.....................................................................................GTCAATTAGTGAGGACTCATTGAGAAGATATGTGTTCTATGCAAGTGAAAATTGCATCCAAGAATTATTATCAGCTTCAGATTCAAAAAGTTGTAACGATGGCTGGAAAATACTTGGCGTA-ATAACGGCGTTGAGATATCTAAACGCCGTTCAGGTTCACTTCACACTTTCCGTAGCCGTTGGTTACTCAAATCTGTCTCTCCTGAACAATTCATCACCGTAGCTAACGCCATCGATGCTGCAAGG....................................................................CAATGGGACGGGGACTTAGTAGAAGCAAGATACATAAAGGATTTGGAAGATAATTTGAGTATTATACGTCTTAGATTTGGGGAAAATTCGAAGCCTTTATTCAGAAACAGAGAATTTATTGTCTATGAACGTCGTGAAACTATGGATGATGGAACACTG..................................................................................GTAGTAGCAGTAGCTTCACTTCCAAAAGAGATAGCAGCAGGTTTGCACCCAAAGCAAAACCAATGCAATAAGAGGTTTATTGTGTGCAACTCTGGATGGGTTGTTGAGAAAATTGACCATGATTCTTGCATGGTCACTTACGTTGTCCAGT...............................................................................................................................................................................................................................................................................................TTGGATCCAGCAGGATGGTTACCAAAATGCTTCGTGAATCGGTTGAACACAAAAGTTGGTTATGATCATTGACAACCTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239042" ref_strand="+" ref_description="SGN-E239042 [cLEL-9-F5](-)">
      <seq>atgggtgaggtagtgaaagagattgagaatatcatggaaatagatggattgaacagttgcgctgaatctagatcaacttctgtagccacgaaggaaccagcgcaacctttgatcatccttacagtgaggaaagcctaaatcgttacaatggggtcaccaattcgcgataaacatcaactcttctcatggaaccaggtgcattgtcatagaaatggaaagtcattcaagcaactgttgtgcttttgtgttagctgtgtacactctgtgcacctctgtcatatgtgtgcggcgtaaatagccttatactagaaatgattcaaaaatccatctaaggatcttcataaacagccttgtatgtttcaactgtttgcttctgataatccaggagctagactccgtggattcaaaatgagtgattttattgtattttggacttttagtcactcattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="109536" stop="108482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109236" g_stop="108787" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="466"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E239042" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109236" e_stop="108787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGTGAGGTAGTGAAAGAGATTGAGAATATCATGGAAATAGATGGATTGAACAGTTGCGCTGAATCTAGATCAACTTCTGTGAGCCACGAAGGAACCAGCGCAACCTTTGATCATCCTTACAGTGAGGAAAGCCTAAATCGTTACAATGGGGTCACCAATTCGCGATAAACATCAACTCTTCTCATGGAACCAGGTGCATTGTCATAGAAATGGAAAGTCATTCAAGCAACTGTTGTGCTTTTGTGTTAGCTGTGTACACTCTGTGCACCTCTGTCATATGTGTGCGGCGTAAATAGCCTTATACTAGAAATGATTCAAAAATCCATCTAAGGATCTTCATAAACAGCCTTGTATGTTTCAACTGTTTGCTTCTGATAATCCAGGAGCTAGACTCCGTGGATTCAAAATGAGTGATTTTATTGTATTTTGGACTTTTAGTCACTCATT</genome_strand>
        <mrna_strand>ATGGGTGAGGTAGTGAAAGAGATTGAGAATATCATGGAAATAGATGGATTGAACAGTTGCGCTGAATCTAGATCAACTTCTGT-AGCCACGAAGGAACCAGCGCAACCTTTGATCATCCTTACAGTGAGGAAAGCCTAAATCGTTACAATGGGGTCACCAATTCGCGATAAACATCAACTCTTCTCATGGAACCAGGTGCATTGTCATAGAAATGGAAAGTCATTCAAGCAACTGTTGTGCTTTTGTGTTAGCTGTGTACACTCTGTGCACCTCTGTCATATGTGTGCGGCGTAAATAGCCTTATACTAGAAATGATTCAAAAATCCATCTAAGGATCTTCATAAACAGCCTTGTATGTTTCAACTGTTTGCTTCTGATAATCCAGGAGCTAGACTCCGTGGATTCAAAATGAGTGATTTTATTGTATTTTGGACTTTTAGTCACTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238691" ref_strand="+" ref_description="SGN-E238691 [cLEL-9-F5](-)">
      <seq>gaatctagatcaacctctgtagccacgaaggaaccagcgcaacctttgatcatccttacagtgaggaaagcctaaatcgttacaatggggtcaccaattcgcgataaacatcaanctcttctcatggaaccaggtgcattgtcatagaaatggaaagtcattcaagcaactgttgtgcttttgtgttagctgtgtacactctgtgcacctctgtcatatgtgtgcggcgtaaatagccttatactagaaatgattcaaaaatccatctaaggatcttcataaacagccttgtatgtttcaactgtttgcttctgataatccaggagctagactccgtggattcaaaatgagtgattttattgtattttggacttttagtcactcattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="109473" stop="108482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109173" g_stop="108787" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="404"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E238691" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109173" e_stop="108787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTAGATCAACTTCTGTGAGCCACGAAGGAACCAGCGCAACCTTTGATCATCCTTACAGTGAGGAAAGCCTAAATCGTTACAATGGGGTCACCAATTCGCGATAAACATCAA-CTCTTCTCATGGAACCAGGTGCATTGTCATAGAAATGGAAAGTCATTCAAGCAACTGTTGTGCTTTTGTGTTAGCTGTGTACACTCTGTGCACCTCTGTCATATGTGTGCGGCGTAAATAGCCTTATACTAGAAATGATTCAAAAATCCATCTAAGGATCTTCATAAACAGCCTTGTATGTTTCAACTGTTTGCTTCTGATAATCCAGGAGCTAGACTCCGTGGATTCAAAATGAGTGATTTTATTGTATTTTGGACTTTTAGTCACTCATT</genome_strand>
        <mrna_strand>GAATCTAGATCAACCTCTGT-AGCCACGAAGGAACCAGCGCAACCTTTGATCATCCTTACAGTGAGGAAAGCCTAAATCGTTACAATGGGGTCACCAATTCGCGATAAACATCAANCTCTTCTCATGGAACCAGGTGCATTGTCATAGAAATGGAAAGTCATTCAAGCAACTGTTGTGCTTTTGTGTTAGCTGTGTACACTCTGTGCACCTCTGTCATATGTGTGCGGCGTAAATAGCCTTATACTAGAAATGATTCAAAAATCCATCTAAGGATCTTCATAAACAGCCTTGTATGTTTCAACTGTTTGCTTCTGATAATCCAGGAGCTAGACTCCGTGGATTCAAAATGAGTGATTTTATTGTATTTTGGACTTTTAGTCACTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347767" ref_strand="+" ref_description="SGN-E347767 [cTOF-26-B13]">
      <seq>ggctatgtcagcactcaggttaaaggaacaatgggctacatggatccagagtactacacaacacaacagttgactgagaagagtgatgtatatagctttggagttctgctgctggagcttataacagcacggagtcctattgtgagaggaaaatacattgtgaaggaattgaggcaagcaatagacaagtctaaagacatgtacaacattgatgagtttgttgatcctgctatcccctcaaacatgacacctataagcttcaggaagtttgttgatctagctttcatgtgcctcgaagatgcaggagctaataggccaacaatgggtgaggtagtgaaagagattgagaatatcatggaaatagatggattgaacagttgcgctgaatctagatcaacttctgtgagccacgaaggaaccagcgcaacctttgatcatccttacagtgaggaaagcctaaatcgttacaatggggtcaccaattcgcgataaacatcaactcttctcatggaaccaggtgcattgtcatagaaatggaaagtcattcaagcaactgttgtgcttttgtgttagctgtgtacactctgtgcacctctgtcatatgtgtgcggcgtaaatagccttatactagaaatgattcaaaaatccatctaaggatcttcataaacagccttgtaatgttcaactgtttgcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="110236" stop="108560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109936" g_stop="109904" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109903" i_stop="109525" i_length="379">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109524" g_stop="108860" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="698" r_length="665" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E347767" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109936" e_stop="109904"/>
          <exon e_start="109524" e_stop="108860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTATGTCAGCACTCAGGTTAAAGGAACAATGGTAAGTCCAGACTTTACAAATGTTGTCATATGGTAGCATTTCTCAGTTTCTATATTTCTGAAGTAACTGGAAACAATTGTCCTTTAATCGTTATAGACTAGTGATCGTTTAGGTTCAATTCCTTAAAGGTTTAACATTGAAGTCGCGTCCTGATCAAATTACACACTGTGCTGAACATATATGAGTGAGTTTATATACAATGAAAGGAGTACACCGGTTAAACTGCTTAAAAAGATTCAAACATCAGTTGACTTGTGATTTTCACAGAGTAATAACTTAGGAAACTTGAAACCTGAACACTTGATATCGACATTGTTGAATAATTTTGTAACTGAACAATTTAATTAATACGAGCTGCTTTGTACATTTATCGGCTTAGGGCTACATGGATCCAGAGTACTACACAACACAACAGTTGACTGAGAAGAGTGATGTATATAGCTTTGGAGTTCTGCTGCTGGAGCTTATAACAGCACGGAGTCCTATTGTGAGAGGAAAATACATTGTGAAGGAATTGAGGCAAGCAATAGACAAGTCTAAAGACATGTACAACATTGATGAGTTTGTTGATCCTGCTATCCCCTCAAACATGACACCTATAAGCTTCAGGAAGTTTGTTGATCTAGCTTTCATGTGCCTCGAAGATGCAGGAGCTAATAGGCCAACAATGGGTGAGGTAGTGAAAGAGATTGAGAATATCATGGAAATAGATGGATTGAACAGTTGCGCTGAATCTAGATCAACTTCTGTGAGCCACGAAGGAACCAGCGCAACCTTTGATCATCCTTACAGTGAGGAAAGCCTAAATCGTTACAATGGGGTCACCAATTCGCGATAAACATCAACTCTTCTCATGGAACCAGGTGCATTGTCATAGAAATGGAAAGTCATTCAAGCAACTGTTGTGCTTTTGTGTTAGCTGTGTACACTCTGTGCACCTCTGTCATATGTGTGCGGCGTAAATAGCCTTATACTAGAAATGATTCAAAAATCCATCTAAGGATCTTCATAAACAGCCTTGTATGTTTCAACTGTTTGCTTCTG</genome_strand>
        <mrna_strand>GGCTATGTCAGCACTCAGGTTAAAGGAACAATG...........................................................................................................................................................................................................................................................................................................................................................................................GGCTACATGGATCCAGAGTACTACACAACACAACAGTTGACTGAGAAGAGTGATGTATATAGCTTTGGAGTTCTGCTGCTGGAGCTTATAACAGCACGGAGTCCTATTGTGAGAGGAAAATACATTGTGAAGGAATTGAGGCAAGCAATAGACAAGTCTAAAGACATGTACAACATTGATGAGTTTGTTGATCCTGCTATCCCCTCAAACATGACACCTATAAGCTTCAGGAAGTTTGTTGATCTAGCTTTCATGTGCCTCGAAGATGCAGGAGCTAATAGGCCAACAATGGGTGAGGTAGTGAAAGAGATTGAGAATATCATGGAAATAGATGGATTGAACAGTTGCGCTGAATCTAGATCAACTTCTGTGAGCCACGAAGGAACCAGCGCAACCTTTGATCATCCTTACAGTGAGGAAAGCCTAAATCGTTACAATGGGGTCACCAATTCGCGATAAACATCAACTCTTCTCATGGAACCAGGTGCATTGTCATAGAAATGGAAAGTCATTCAAGCAACTGTTGTGCTTTTGTGTTAGCTGTGTACACTCTGTGCACCTCTGTCATATGTGTGCGGCGTAAATAGCCTTATACTAGAAATGATTCAAAAATCCATCTAAGGATCTTCATAAACAGCCTTGTAATGTTCAACTGTTTGCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614759" ref_strand="+" ref_description="SGN-E614759 [64550]">
      <seq>agatcttgaagctattagaaagagtaaccctttcgctacatgggattctataaaagacagcggtggtgttccacagttaaaaggtgtcaaatgtttcacatttgaagagttgaaaaaatacaccaataatttttcagaaagcaattacattggatctggtggttatgggaaggtatacaaaggcacacttccagatggacaacttattgcaattaaaagagcagaacaagcatctaatcaaggcgccctcgagtttaaaactgagattgagattctttcaaggtttcatcacaaaaatgttgtcagccttgtaggattttgtttcaggcaaggtgaacagatgctggtctatgagtttataccaaatggatccttgaaagagagtctttcaggaaagtccgggattaagttagattggaagaggagacttcggatagcccttggagcagccagaggtttgcaatatcttcatgatcatgttgaccctcctatcatccacagagatatcaaatcgaataacatcttgctggatgagcgcttgactgcaaaagttgctgattttggtctttccaagacgatgtatgagccagacaagggttacgtcagtactcaggttaaaggaacaatgggctacatggatccagagtactacacaagacaacagttgactgagaagagtgatgtctatagcttcggagttctgctgctagagctttataacagcacggaagtcctattgtggagaggcaaaatacattgtgaagggaattgaggccaagcgatagacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="111146" stop="109070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110846" g_stop="110812" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110811" i_stop="110732" i_length="80">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110731" g_stop="110595" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="172" r_length="137" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110594" i_stop="110448" i_length="147">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.664" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110447" g_stop="110228" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="392" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110227" i_stop="110140" i_length="88">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110139" g_stop="109904" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="628" r_length="236" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109903" i_stop="109525" i_length="379">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109524" g_stop="109370" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="789" r_length="161" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E614759" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110846" e_stop="110812"/>
          <exon e_start="110731" e_stop="110595"/>
          <exon e_start="110447" e_stop="110228"/>
          <exon e_start="110139" e_stop="109904"/>
          <exon e_start="109524" e_stop="109370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAAGAAGCTGTTAGAAAGAGTAACCCTTTCGGTGAGTTCTGCTACTGTTCTTTAGTGTTGCTTCTAACTTTTTATTTCGCTGATGGTTACCGTCTTTTTTTATCTGTCCAGCTACATGGGATTCTATTAAAGACAGCGGCGATGTTCCACAGTTAAAAGGTGTAAAATGTTTCACATTTGAAGAGCTGAAAAAATACACCAATAATTTTTCAGAAAGCAATTTTGTTGGATCTGGTGGTTATGGGAAGGTTAGTATCAATTGACTTTTGATAATACAATGTTATATCATGATGACTGATTTAAAAGCTGTTGCTTTAATTCAATCCATGCTATCTGCACCATGTTTCGGCAAGCTAAAGCCAGTTGATCACTTAAAACTTCTCGCAAACTTACAGGTGTACAAAGGCACACTTCCAGATGGACAACTTATTGCAATTAAAAGAGCAGGACAAGCATCTAAGCAAGGCGCCCTCGAGTTTAAAACTGAGATTGAGATTCTTTCAAGGTTTCATCACAAAAATGTTGTCAGCCTGGTAGGGTTTTGTTTCAGGCAAGGTGAACAGATGCTGGTCTATGAGTTTATACCAAATGGATCCTTGAAAGAGAGTCTTTCAGGTATTTTGCATTCTCATCGACTGTTGTTTTGAAAATCAGCTGTAGGTTGGAATGCCTGGCATTGATAAGTTAGTGTTAACTTCTGCAGGGAAGTCCGGGATTAAGTTAGATTGGAAGAGGAGACTTCGGATAGCCCTTGGAGCAGCCAGAGGTTTGCAATATCTTCATGATCATGTTGACCCCCCTATCATCCACAGAGATATCAAATCGAATAACATCTTGCTGGATGAGCGCTTGAATGCAAAAGTTGCTGATTTTGGTCTTTCCAAGACGATGTCTGAGCCAGACAAGGGCTATGTCAGCACTCAGGTTAAAGGAACAATGGTAAGTCCAGACTTTACAAATGTTGTCATATGGTAGCATTTCTCAGTTTCTATATTTCTGAAGTAACTGGAAACAATTGTCCTTTAATCGTTATAGACTAGTGATCGTTTAGGTTCAATTCCTTAAAGGTTTAACATTGAAGTCGCGTCCTGATCAAATTACACACTGTGCTGAACATATATGAGTGAGTTTATATACAATGAAAGGAGTACACCGGTTAAACTGCTTAAAAAGATTCAAACATCAGTTGACTTGTGATTTTCACAGAGTAATAACTTAGGAAACTTGAAACCTGAACACTTGATATCGACATTGTTGAATAATTTTGTAACTGAACAATTTAATTAATACGAGCTGCTTTGTACATTTATCGGCTTAGGGCTACATGGATCCAGAGTACTACACAACACAACAGTTGACTGAGAAGAGTGATGTATATAGCTTTGGAGTTCTGCTGCTGGAGC-TTATAACAGCACGG-AGTCCTATTGT-GAGAGG-AAAATACATTGTGAA-GGAATTGAGG-CAAGCAATAGACAA</genome_strand>
        <mrna_strand>AGATCTTGAAGCTATTAGAAAGAGTAACCCTTTCG................................................................................CTACATGGGATTCTATAAAAGACAGCGGTGGTGTTCCACAGTTAAAAGGTGTCAAATGTTTCACATTTGAAGAGTTGAAAAAATACACCAATAATTTTTCAGAAAGCAATTACATTGGATCTGGTGGTTATGGGAAG...................................................................................................................................................GTATACAAAGGCACACTTCCAGATGGACAACTTATTGCAATTAAAAGAGCAGAACAAGCATCTAATCAAGGCGCCCTCGAGTTTAAAACTGAGATTGAGATTCTTTCAAGGTTTCATCACAAAAATGTTGTCAGCCTTGTAGGATTTTGTTTCAGGCAAGGTGAACAGATGCTGGTCTATGAGTTTATACCAAATGGATCCTTGAAAGAGAGTCTTTCAG........................................................................................GAAAGTCCGGGATTAAGTTAGATTGGAAGAGGAGACTTCGGATAGCCCTTGGAGCAGCCAGAGGTTTGCAATATCTTCATGATCATGTTGACCCTCCTATCATCCACAGAGATATCAAATCGAATAACATCTTGCTGGATGAGCGCTTGACTGCAAAAGTTGCTGATTTTGGTCTTTCCAAGACGATGTATGAGCCAGACAAGGGTTACGTCAGTACTCAGGTTAAAGGAACAATG...........................................................................................................................................................................................................................................................................................................................................................................................GGCTACATGGATCCAGAGTACTACACAAGACAACAGTTGACTGAGAAGAGTGATGTCTATAGCTTCGGAGTTCTGCTGCTAGAGCTTTATAACAGCACGGAAGTCCTATTGTGGAGAGGCAAAATACATTGTGAAGGGAATTGAGGCCAAGCGATAGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406800" ref_strand="+" ref_description="SGN-E406800 [PPI-5-C15]">
      <seq>gctacatgggattctataaaagacagcggtggtgttccacagttaaaaggtgtcaaatgtttcacatttgaagagttgaaaaaatacaccaataatttttcagaaagcaattacattggatctggtggttatgggaaggtatacaaaggcacacttccagatggacaacttattgcaattaaaagagcagaacaagcatctaatcaaggcgccctcgagtttaaaactgagattgagattctttcaaggtttcatcacaaaaatgttgtcagccttgtaggattttgtttcaggcaaggtgaacagatgctggtctatgagtttataccaaatggatccttgaaagagagtctttcaggaaagtccgggattaagttagattggaagaggagacttcggatagcccttggagcatccagaggtttgcaatatcttcatgatcatgttgaccctcctatcatccacagagatatcaaatcgaataacatcttgctggatgagcgcttgactgcaaaagttgctgattttggtctttccaagacgatgtatgagccagacaagggttacgtcagtactcaggttaaaggaacaatgggctacatggatccagagtactacacaacacaacagttgactgagaagagtgatgtctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="111032" stop="109164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110732" g_stop="110595" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110594" i_stop="110448" i_length="147">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.664" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110447" g_stop="110228" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="358" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110227" i_stop="110140" i_length="88">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110139" g_stop="109904" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="594" r_length="236" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109903" i_stop="109525" i_length="379">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109524" g_stop="109464" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="655" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E406800" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110732" e_stop="110595"/>
          <exon e_start="110447" e_stop="110228"/>
          <exon e_start="110139" e_stop="109904"/>
          <exon e_start="109524" e_stop="109464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACATGGGATTCTATTAAAGACAGCGGCGATGTTCCACAGTTAAAAGGTGTAAAATGTTTCACATTTGAAGAGCTGAAAAAATACACCAATAATTTTTCAGAAAGCAATTTTGTTGGATCTGGTGGTTATGGGAAGGTTAGTATCAATTGACTTTTGATAATACAATGTTATATCATGATGACTGATTTAAAAGCTGTTGCTTTAATTCAATCCATGCTATCTGCACCATGTTTCGGCAAGCTAAAGCCAGTTGATCACTTAAAACTTCTCGCAAACTTACAGGTGTACAAAGGCACACTTCCAGATGGACAACTTATTGCAATTAAAAGAGCAGGACAAGCATCTAAGCAAGGCGCCCTCGAGTTTAAAACTGAGATTGAGATTCTTTCAAGGTTTCATCACAAAAATGTTGTCAGCCTGGTAGGGTTTTGTTTCAGGCAAGGTGAACAGATGCTGGTCTATGAGTTTATACCAAATGGATCCTTGAAAGAGAGTCTTTCAGGTATTTTGCATTCTCATCGACTGTTGTTTTGAAAATCAGCTGTAGGTTGGAATGCCTGGCATTGATAAGTTAGTGTTAACTTCTGCAGGGAAGTCCGGGATTAAGTTAGATTGGAAGAGGAGACTTCGGATAGCCCTTGGAGCAGCCAGAGGTTTGCAATATCTTCATGATCATGTTGACCCCCCTATCATCCACAGAGATATCAAATCGAATAACATCTTGCTGGATGAGCGCTTGAATGCAAAAGTTGCTGATTTTGGTCTTTCCAAGACGATGTCTGAGCCAGACAAGGGCTATGTCAGCACTCAGGTTAAAGGAACAATGGTAAGTCCAGACTTTACAAATGTTGTCATATGGTAGCATTTCTCAGTTTCTATATTTCTGAAGTAACTGGAAACAATTGTCCTTTAATCGTTATAGACTAGTGATCGTTTAGGTTCAATTCCTTAAAGGTTTAACATTGAAGTCGCGTCCTGATCAAATTACACACTGTGCTGAACATATATGAGTGAGTTTATATACAATGAAAGGAGTACACCGGTTAAACTGCTTAAAAAGATTCAAACATCAGTTGACTTGTGATTTTCACAGAGTAATAACTTAGGAAACTTGAAACCTGAACACTTGATATCGACATTGTTGAATAATTTTGTAACTGAACAATTTAATTAATACGAGCTGCTTTGTACATTTATCGGCTTAGGGCTACATGGATCCAGAGTACTACACAACACAACAGTTGACTGAGAAGAGTGATGTATATA</genome_strand>
        <mrna_strand>GCTACATGGGATTCTATAAAAGACAGCGGTGGTGTTCCACAGTTAAAAGGTGTCAAATGTTTCACATTTGAAGAGTTGAAAAAATACACCAATAATTTTTCAGAAAGCAATTACATTGGATCTGGTGGTTATGGGAAG...................................................................................................................................................GTATACAAAGGCACACTTCCAGATGGACAACTTATTGCAATTAAAAGAGCAGAACAAGCATCTAATCAAGGCGCCCTCGAGTTTAAAACTGAGATTGAGATTCTTTCAAGGTTTCATCACAAAAATGTTGTCAGCCTTGTAGGATTTTGTTTCAGGCAAGGTGAACAGATGCTGGTCTATGAGTTTATACCAAATGGATCCTTGAAAGAGAGTCTTTCAG........................................................................................GAAAGTCCGGGATTAAGTTAGATTGGAAGAGGAGACTTCGGATAGCCCTTGGAGCATCCAGAGGTTTGCAATATCTTCATGATCATGTTGACCCTCCTATCATCCACAGAGATATCAAATCGAATAACATCTTGCTGGATGAGCGCTTGACTGCAAAAGTTGCTGATTTTGGTCTTTCCAAGACGATGTATGAGCCAGACAAGGGTTACGTCAGTACTCAGGTTAAAGGAACAATG...........................................................................................................................................................................................................................................................................................................................................................................................GGCTACATGGATCCAGAGTACTACACAACACAACAGTTGACTGAGAAGAGTGATGTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476738" ref_strand="+" ref_description="SGN-E476738 [cSTB-45-H4]">
      <seq>ctttcttcccattagtcttttttttctctcttcattttagtacacatattggcccctaagaagaaacttaggttgcatggtggtggatttaaacaatggtccaaacaagaacaatccaactgatcatcctttgtctgcttattatttctatgcaagttttggtgcagctgggagcttcaacaaattctggtgactatgttgtgttagagtcactgaaggaagagtgggaaaacatacctccaagttggggtgggtctgatccttgtaacgatccatgggaaggcatcgactgcaacaattcacgtgttatttctataaaattatcaagcattaatctgaaaggggagctatctggagatatcgaaggcttgtctgaattgcagattttggatctatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="116204" stop="114019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115904" g_stop="115706" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115705" i_stop="115282" i_length="424">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115281" g_stop="115161" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="316" r_length="121" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115160" i_stop="114399" i_length="762">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114398" g_stop="114327" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="388" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E476738" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115904" e_stop="115706"/>
          <exon e_start="115281" e_stop="115161"/>
          <exon e_start="114398" e_stop="114327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTCCCATTAGTCTTTTTTTTTTCTCTCTTCATTTTATTATATTTGTTGGCTTCTAAGAAGAAACTTAGTTTAATTTGCATGGTGGATTTAAACAATGGTCCAAACAAGAACAGTCCAACTGATTATCTTTTGTCTGCTTATTATTTCTATGCAAGTTTTGATTCAGCTGGAAGCTTCAACAGATTCTGGTGACTGTAAGTCATAAATATCACATCTCTTTTCCTTTTATTTTTTTAACTCTATAATCATCGATTTAACTTATAAACACCATATCGCGAATAAAAAATAACGTTATACTAGTACCTACCATAATTTAACATGTTATATCGTAAGTTTTCTTTTGATCCAATCACTTATTGTAAATAATTATGTTTTAGATGATTTGAGTTGTGAAGGCAAATTGTTTTTATTTTTTTACTACGGAATATATTAATTTTCACTTTGATTCCTTTTTCGAGTTCATTACTTAAAAGGTCATTCGATTATTGGATACAGTAATATTTTTCGTTGTTTTGTGTTAGAAAAGCTAAATATGATTTTCTTAATCAATTTCGTTTCGTATATTCTGATTTTTTTAAAAAAATAATTAGGGTATGGTATTTTTTGGTTGAAAAATAGATGTTGTGTTAGAGTCACTGAAGGAAGAATGGGAAAACGTACCTCCAACTTGGGATGGGTCTGATCCTTGTGACGATCCATGGGAAGGAATCGACTGCAACAATTCACGTGTTATATCTATGTAAGTTTTTTTTTTTTTGTGATTAAATGAAAATTATTTAAATGAGAATCATATTAATTCAAATATTATTTTTTACAAAAATAAAAATATTACTACTTTAAATTATTATTCCTAGATTTATGATTAAAATGTTGAAAATACAAGTGCACTCGTCAAGAATTCCATTTTTCCTTAGCACGACAACGTCACATGTTTAATTCAATGTCCACCCACATCATTTGTGCCAGCTAATAATATTTTTTGCACAATTTTTTTAAAAGAAAAAATCAAATTTTTAATACAGTAGAGTCTAGAATAAATAACGGAATTATTTTCAAAAATCAGCAAAATAATTTATTTATTTTAAAAACTACATCGTAAGAAAAATACAAAATAGGTAACTGTCACTGTATTTGCTCTTCCATTTTGGTCAGTTGATCATGCGTATATATTTTTTAAAAAAAGAAGATTTGTTATCTGTGGCGCGTGAATTGAATGTTTCACTTCAACTCGAGTGTTTCATTCTACACTAAAGAATTTAGATTTAAAATTTATTTAGGGCTTCGATACGTGAGTGTTTACGCTTTAACTTAGAAGTTTCGGATTTGAAAATTTAGGGAGACTTCAGATACGAGCTGACGGGATGGGAAACCCAAAAAAATTTATTATCTAATGAAACTAGGTTAATATCAAACCTTATTAATTTTAATTATTAAATATTAAAATGGCATTGCTAATTGTCTTTGTAATTTTGAGGTACTAATTAATGATTGTGAATTTCAGAAAATTATCAAGCATTAATCTGAAAGGAGAGCTATCTGGAGATATCGAAGGCTTGTCTGAATTGCAGATACT</genome_strand>
        <mrna_strand>CTTTCTTCCCATTAGTC--TTTTTTTTCTCTCTTCATTTTAGTACACATATTGGCCCCTAAGAAGAAACTTAGGTTGCATGG--TGGTGGATTTAAACAATGGTCCAAACAAGAACAATCCAACTGATCATCCTTTGTCTGCTTATTATTTCTATGCAAGTTTTGGTGCAGCTGGGAGCTTCAACAAATTCTGGTGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGTTAGAGTCACTGAAGGAAGAGTGGGAAAACATACCTCCAAGTTGGGGTGGGTCTGATCCTTGTAACGATCCATGGGAAGGCATCGACTGCAACAATTCACGTGTTATTTCTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTATCAAGCATTAATCTGAAAGGGGAGCTATCTGGAGATATCGAAGGCTTGTCTGAATTGCAGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E575123" ref_strand="+" ref_description="SGN-E575123 [34697]">
      <seq>gcttgagatagttacaggaaaagtacctattgaaataaggaagatatattgtcagggaagtgaagagtgcaatggacaaatcaaaagacatgtataaccttcaagacattttggatcctgcagttcgcgcaggtgcaactcctagaagcttagagaagtttgtggatttagcactcaaatgtgttgaagaagaaggagccaacagaccttcaatgaatgaagtggtgaaagagattgaaaatatcatggagattgcgggactgaacccaaatgcagactctgcatcttcttcagcaacctatgaaggaccaaacaaaggcatgaaccatccatatactgatgaaagtctctttgtctatagtggagcatatcctaattcaaaggtagagccaaagtaagatcagtgtttttgtggtttttcttagcttgtggaattaagattgacacataatatgctttgccttgttacgtgcgtacaaatttgagagaatgattcaactaattttgtctttggagtatattattgtacaacagagaaatacttttttttttttttgaaacattttatttttaccttctgtaacaaagtgtgtaaattttttatgaatattgaattaggatgatcatttgtatatgagaattcaccatatttttcatcttaatataaattggtgcattcaatgttgttgcaaggctaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="120277" stop="118987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119977" g_stop="119289" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E575123" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119977" e_stop="119289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGAGATAGTTACAGGAAAAGTTCCTATTGAAA-AAGGAAGATATATTGTCAGGGAAGTGAAGACTGCAATGGACAGATCAAAAGACATGTATAACCTTCAAGACATTTTGGATCCTGCAGTTCGCGCAGGTGCAACTCCTAGAAGTTTAGAGAAGTTTGTGGATTTAGCACTCAAATGTGTTGAAGAAGAAGGAGCCAACAGACCTTCAATGAGTGAAGTGGTGAAAGAGATCGAAAATATCATGGAGATGGCGGGACTGAACCCGAATGCAGACTCTGCATCTTCTTCAGCAACTTATGAAGGACCAAACAAAGGCATGAACCATCCATATACTGATGAAAGTCTCTTTGTGTATAGTGGAGCATATCCTAATTCAAAGGTAGAGCCGAAGTAAGATCAGTGTTATTATGGTTTTTCTTAGCTTGTGGAATTAAGATTGACACATAACATGCTTTGGCCTGTTATGTGTGTACAAATTTGAGAGAATGCAGAATGATTCAACTAATTTTGTCATTGGAGTAAATTACTGTACAACAGTGAAGATATTGAGTTTATTTATTTTTGGGAACA-TTTACTTTTACCTTCTGTAA-AAACTGTGTAAACTTTTTTTTCTGATATCAATTAGGATGATCATTTGTATATGAGAATTCA-CATA-TTTTCATCCTAATATAAATT-GTGCATTCAAT</genome_strand>
        <mrna_strand>GCTTGAGATAGTTACAGGAAAAGTACCTATTGAAATAAGGAAGATATATTGTCAGGGAAGTGAAGAGTGCAATGGACAAATCAAAAGACATGTATAACCTTCAAGACATTTTGGATCCTGCAGTTCGCGCAGGTGCAACTCCTAGAAGCTTAGAGAAGTTTGTGGATTTAGCACTCAAATGTGTTGAAGAAGAAGGAGCCAACAGACCTTCAATGAATGAAGTGGTGAAAGAGATTGAAAATATCATGGAGATTGCGGGACTGAACCCAAATGCAGACTCTGCATCTTCTTCAGCAACCTATGAAGGACCAAACAAAGGCATGAACCATCCATATACTGATGAAAGTCTCTTTGTCTATAGTGGAGCATATCCTAATTCAAAGGTAGAGCCAAAGTAAGATCAGTGTTTTTGTGGTTTTTCTTAGCTTGTGGAATTAAGATTGACACATAATATGCTTTGCCTTGTTACGTGCGTACAAATTT----G-A-G-AGAATGATTCAACTAATTTTGTCTTTGGAGTATATTATTGTACAACAGAGAA-ATACT---TTT-TTTTTTTTTTGAAACATTTTATTTTTACCTTCTGTAACAAAGTGTGTAAATTTTTTATGAATAT-TGAATTAGGATGATCATTTGTATATGAGAATTCACCATATTTTTCATCTTAATATAAATTGGTGCATTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433544" ref_strand="+" ref_description="SGN-E433544 [STM-58-L11]">
      <seq>agaaaaaagtttacacactttttacagaaggtaaaaataaatgtttcaaaaaaaagaaaaatcagtatcttctctgttgtagaataatttactccaaagacaaaattagttgaatcattctctcaaatttgtacacacataacaggccaaagcatattatgtgtcaatcttaattccacaagctaagaaaaaccacaaaaacactgatcttactttggctctacctttgaattaggatatgctccactatagacaaagagactttcatcagtatatggatggttcatgcctttgtttggtccttcataggttgctgaagaagatgcagagtctgcattcgggttcagtcccgcgatctccatgatattttcaatctctttcaccacttcattcattgaaggtctgttggctccttcttcttcaacacatttgagtgctaaatccacaaacttctctaagcttctaggagttgcacctgcacgaactgcaggatccaaaatgtcttgaaggttatacatgtcttttgatttgtccattgcactcttcacttccctgacaatatatcttcctttttcaataggtacttttcctgtaactatttcaagcagcaccactccgaagctataaacatcactcttctcagtcagctggtttgtcatgtaatattcaggatccatgtatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="119066" stop="120355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119364" g_stop="120056" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E433544" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119364" e_stop="120056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTTACACAGTTTTTACAGAAGGTAAAAGTAAATGTTCCCAAAAATAAATAAACTCAATATCTTCACTGTTGTACAGTAATTTACTCCAATGACAAAATTAGTTGAATCATTCTGCATTCTCTCAAATTTGTACACACATAACAGGCCAAAGCATGTTATGTGTCAATCTTAATTCCACAAGCTAAGAAAAACCATAATAACACTGATCTTACTTCGGCTCTACCTTTGAATTAGGATATGCTCCACTATACACAAAGAGACTTTCATCAGTATATGGATGGTTCATGCCTTTGTTTGGTCCTTCATAAGTTGCTGAAGAAGATGCAGAGTCTGCATTCGGGTTCAGTCCCGCCATCTCCATGATATTTTCGATCTCTTTCACCACTTCACTCATTGAAGGTCTGTTGGCTCCTTCTTCTTCAACACATTTGAGTGCTAAATCCACAAACTTCTCTAAACTTCTAGGAGTTGCACCTGCGCGAACTGCAGGATCCAAAATGTCTTGAAGGTTATACATGTCTTTTGATCTGTCCATTGCAGTCTTCACTTCCCTGACAATATATCTTCCTTTTTCAATAGGAACTTTTCCTGTAACTATCTCAAGCAGCACCACTCCGAAACTATAAACATCACTCTTCTCAGTCAGCTGGTTTGTCATGTAATATTCAGGATCCATGTATCCCT</genome_strand>
        <mrna_strand>AGAAAAAAGTTTACACACTTTTTACAGAAGGTAAAAATAAATGTT-TCAAAAAAAAGAAAAATCAGTATCTTCTCTGTTGTAGAATAATTTACTCCAAAGACAAAATTAGTTG-A--A---T-CATTCTCTCAAATTTGTACACACATAACAGGCCAAAGCATATTATGTGTCAATCTTAATTCCACAAGCTAAGAAAAACCACAAAAACACTGATCTTACTTTGGCTCTACCTTTGAATTAGGATATGCTCCACTATAGACAAAGAGACTTTCATCAGTATATGGATGGTTCATGCCTTTGTTTGGTCCTTCATAGGTTGCTGAAGAAGATGCAGAGTCTGCATTCGGGTTCAGTCCCGCGATCTCCATGATATTTTCAATCTCTTTCACCACTTCATTCATTGAAGGTCTGTTGGCTCCTTCTTCTTCAACACATTTGAGTGCTAAATCCACAAACTTCTCTAAGCTTCTAGGAGTTGCACCTGCACGAACTGCAGGATCCAAAATGTCTTGAAGGTTATACATGTCTTTTGATTTGTCCATTGCACTCTTCACTTCCCTGACAATATATCTTCCTTTTTCAATAGGTACTTTTCCTGTAACTATTTCAAGCAGCACCACTCCGAAGCTATAAACATCACTCTTCTCAGTCAGCTGGTTTGTCATGTAATATTCAGGATCCATGTATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433543" ref_strand="+" ref_description="SGN-E433543 [STM-58-L11]">
      <seq>ggtgaagttgatagttaagaagtctgagtctatgtctatgctgttctccaggggcatcctccgaatcaaaaaaatcaagtagtacaggcattattattggagcagcagttggtggttctgtcattgcaattatagcactaatcattggagtttatgctttccggcaaaagaaaagagctgaagatgctgcaaagaggagcgatccttttgcatcctgggacgagaataaacatagtggtgctgttccacagttgacaggagctagatttttctcatttgaggagctcaaaaaatggaccaataatttttcagaaaccaacgatattggttgtggtggttatggaaaggtttacagaggaactcttccaaatggagaattggttgcaattaaaagagctctacaagggtctatgcagggtgcacatgagttcaaaactgagatagagcttctctctagagttcatcacaagaatgtcgttggccttgctggattttgtttcgatcaagctgaacagatgcttgtgtacgagtatattcctaatggcaccttaaaagacggtctttcaggcaagactggaatcaggttagattggatgaggagactgaggatagccgttggagcagccagaggtttgcagtatttgcatgaccttgtcaatcctcccatcatacacagggacatcaaatccaacaatatttttgctggatgatcgcctaaacgcaagagttgctgattttggcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="121740" stop="120036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121441" g_stop="121232" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121231" i_stop="121147" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121146" g_stop="121010" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="347" r_length="137" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121009" i_stop="120837" i_length="173">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120836" g_stop="120617" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="567" r_length="220" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120616" i_stop="120512" i_length="105">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120511" g_stop="120336" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="744" r_length="177" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E433543" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121441" e_stop="121232"/>
          <exon e_start="121146" e_stop="121010"/>
          <exon e_start="120836" e_stop="120617"/>
          <exon e_start="120511" e_stop="120336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAGTTGATAGTTAAGAAGTCTGAGTCTATGTATATGCTGTTCTCCAGGGGCATCCTCCGAATCAAAAAACTCAAGCAGTACAGGCATTATTATTGGAGCGGCAGTTGGTGGCTCTGTCATTGCAATTATAGCACTAATCATTGGAGTTTATGCTTTCCGGCAAAAGAAAAGAGCTGAAGATGCTGCAAAGAGGAGCGATCCTTTTGGTAAGATTTGGAACTATCTAATTAAATCATTTACTTATTACTTCAATCTTATGGTAGATGTTTGCTATCTTTCTTATTAATGCAGCATCCTGGGACTCGAACAAACATAGTGGTGCTGTACCACAGCTGACGGGAGCTAGATTTTTCTCATTTGAGGAGCTCAAAAAATGGACCAATAATTTTTCAGAAACCAATGATATTGGTTGTGGTGGTTATGGAAAGGTTAGCTTTTAGTGACATGCGCAACCCCCTCCCCACCACCGTCATCACAACTGACAATATCAATATATGAAGAAGTTTGTTTGTACCAGCTTCTCTCTCCCCTGAAAAGAAAATTTCTTGACTGCAATTGGAACTGTATTGAGTTTTTAAACTGTAGAAGTGTGCCTCTCCAGGTTTACAGAGGAACTCTTCCAAATGGAGAATTGGTTGCAATTAAAAGAGCTCTACAAGGGTCTATGCAGGGTGCACACGAGTTCAAAACTGAGATAGAGCTTCTCTCAAGGGTTCATCACAAGAACGTCGTTGGCCTTGCTGGCTTTTGTTTCGATCAAGCTGAACAGATGCTTGTGTACGAGTACATTCCTAATGGCACCTTAAAAGACGGTCTTTCAGGTATATGTTGGTCCCTTCTTATTTATTCACTGAATCTAGCTCCTTTTAACTAGATCAAAACAGAAAATGTACATTTCGAAAATGTAATGAAATTTGCACTTGTAGGCAAGACTGGCATCAGGTTAGATTGGATGAGGAGACTGAGGATAGCCGTTGGAGCAGCCAGAGGTTTGCAGTATTTGCATGACCTTGTCAATCCTCCCATCATACACAGGGACATCAAATCCAATAATA-TTTTGCTGGATGATCGCCTAAACGCAAGAGTTGCTGATTTTGGCCTG</genome_strand>
        <mrna_strand>GGTGAAGTTGATAGTTAAGAAGTCTGAGTCTATGTCTATGCTGTTCTCCAGGGGCATCCTCCGAATCAAAAAAATCAAGTAGTACAGGCATTATTATTGGAGCAGCAGTTGGTGGTTCTGTCATTGCAATTATAGCACTAATCATTGGAGTTTATGCTTTCCGGCAAAAGAAAAGAGCTGAAGATGCTGCAAAGAGGAGCGATCCTTTTG.....................................................................................CATCCTGGGACGAGAATAAACATAGTGGTGCTGTTCCACAGTTGACAGGAGCTAGATTTTTCTCATTTGAGGAGCTCAAAAAATGGACCAATAATTTTTCAGAAACCAACGATATTGGTTGTGGTGGTTATGGAAAG.............................................................................................................................................................................GTTTACAGAGGAACTCTTCCAAATGGAGAATTGGTTGCAATTAAAAGAGCTCTACAAGGGTCTATGCAGGGTGCACATGAGTTCAAAACTGAGATAGAGCTTCTCTCTAGAGTTCATCACAAGAATGTCGTTGGCCTTGCTGGATTTTGTTTCGATCAAGCTGAACAGATGCTTGTGTACGAGTATATTCCTAATGGCACCTTAAAAGACGGTCTTTCAG.........................................................................................................GCAAGACTGGAATCAGGTTAGATTGGATGAGGAGACTGAGGATAGCCGTTGGAGCAGCCAGAGGTTTGCAGTATTTGCATGACCTTGTCAATCCTCCCATCATACACAGGGACATCAAATCCAACAATATTTTTGCTGGATGATCGCCTAAACGCAAGAGTTGCTGATTTTGGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301013" ref_strand="+" ref_description="SGN-E301013 [cLEW-22-I5]">
      <seq>aaagaggagcgatccttttgcatcctgggactcgaacaaacatagtggtgctgtaccacagctgacgggagctagatttttctcatttgaggagctcaaaaaatggaccaataatttttcagaaaccaatgatattggttgtggtggttatggaaaggtttacagaggaactcttccaaatggagaattggttgcaattaaaagagctctacaagggtctatgcagggtgcacacgagttcaaaactgagatagagcttctctcaagggttcatcacaagaacgtcgttggccttgctggcttttgtttcgatcaagctgaacagatgcttgtgtacgagtacattcctaatggcaccttaaaagacggtctttcaggcaagactggcatcaggttagattggatgaggagactgaggatagccgttggagcagccagaggtttgcagtatttgcatgaccttgtcaatcctcccatcatacacaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="121551" stop="120100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121251" g_stop="121232" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121231" i_stop="121147" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121146" g_stop="121010" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="157" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121009" i_stop="120837" i_length="173">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120836" g_stop="120617" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="377" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120616" i_stop="120512" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120511" g_stop="120400" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="489" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E301013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121251" e_stop="121232"/>
          <exon e_start="121146" e_stop="121010"/>
          <exon e_start="120836" e_stop="120617"/>
          <exon e_start="120511" e_stop="120400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGAGCGATCCTTTTGGTAAGATTTGGAACTATCTAATTAAATCATTTACTTATTACTTCAATCTTATGGTAGATGTTTGCTATCTTTCTTATTAATGCAGCATCCTGGGACTCGAACAAACATAGTGGTGCTGTACCACAGCTGACGGGAGCTAGATTTTTCTCATTTGAGGAGCTCAAAAAATGGACCAATAATTTTTCAGAAACCAATGATATTGGTTGTGGTGGTTATGGAAAGGTTAGCTTTTAGTGACATGCGCAACCCCCTCCCCACCACCGTCATCACAACTGACAATATCAATATATGAAGAAGTTTGTTTGTACCAGCTTCTCTCTCCCCTGAAAAGAAAATTTCTTGACTGCAATTGGAACTGTATTGAGTTTTTAAACTGTAGAAGTGTGCCTCTCCAGGTTTACAGAGGAACTCTTCCAAATGGAGAATTGGTTGCAATTAAAAGAGCTCTACAAGGGTCTATGCAGGGTGCACACGAGTTCAAAACTGAGATAGAGCTTCTCTCAAGGGTTCATCACAAGAACGTCGTTGGCCTTGCTGGCTTTTGTTTCGATCAAGCTGAACAGATGCTTGTGTACGAGTACATTCCTAATGGCACCTTAAAAGACGGTCTTTCAGGTATATGTTGGTCCCTTCTTATTTATTCACTGAATCTAGCTCCTTTTAACTAGATCAAAACAGAAAATGTACATTTCGAAAATGTAATGAAATTTGCACTTGTAGGCAAGACTGGCATCAGGTTAGATTGGATGAGGAGACTGAGGATAGCCGTTGGAGCAGCCAGAGGTTTGCAGTATTTGCATGACCTTGTCAATCCTCCCATCATACACAGGGA</genome_strand>
        <mrna_strand>AAAGAGGAGCGATCCTTTTG.....................................................................................CATCCTGGGACTCGAACAAACATAGTGGTGCTGTACCACAGCTGACGGGAGCTAGATTTTTCTCATTTGAGGAGCTCAAAAAATGGACCAATAATTTTTCAGAAACCAATGATATTGGTTGTGGTGGTTATGGAAAG.............................................................................................................................................................................GTTTACAGAGGAACTCTTCCAAATGGAGAATTGGTTGCAATTAAAAGAGCTCTACAAGGGTCTATGCAGGGTGCACACGAGTTCAAAACTGAGATAGAGCTTCTCTCAAGGGTTCATCACAAGAACGTCGTTGGCCTTGCTGGCTTTTGTTTCGATCAAGCTGAACAGATGCTTGTGTACGAGTACATTCCTAATGGCACCTTAAAAGACGGTCTTTCAG.........................................................................................................GCAAGACTGGCATCAGGTTAGATTGGATGAGGAGACTGAGGATAGCCGTTGGAGCAGCCAGAGGTTTGCAGTATTTGCATGACCTTGTCAATCCTCCCATCATACACAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403730" ref_strand="+" ref_description="SGN-E403730 [PPC-11-F17]">
      <seq>ggtgaagttgatagttaagaagtctgagtctatgtctatgctgttctccaggggcatcctccgaatcaaaaaaatcaagtagtacaggcattattattggagcagcagttggtggttctgtcattgcaattatagcactaatcattggagtttatgctttccggcaaaagaaaagagctgaagatgctgcaaagaggagcgatccttttgcatcctgggacgagaataaacatagtggtgctgttccacagttgacaggagctagatttttctcatttgaggagctcaaaaaatggaccaataatttttcagaaaccaacgatattggttgtggtggttatggaaaggtttacagaggaactcttccaaatggagaattggttgcaattaaaagagctctacaagggtctatgcagggtgcacatgagttcaaaactgagatagagcttctctctagagttcatcacaagaatgtcgttggccttgctggattttgtttcgatcaagctgaacagatgcttgtgtacgagtatattcctaatggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="121740" stop="120337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121441" g_stop="121232" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121231" i_stop="121147" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121146" g_stop="121010" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="347" r_length="137" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121009" i_stop="120837" i_length="173">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120836" g_stop="120637" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="547" r_length="200" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E403730" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121441" e_stop="121232"/>
          <exon e_start="121146" e_stop="121010"/>
          <exon e_start="120836" e_stop="120637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAGTTGATAGTTAAGAAGTCTGAGTCTATGTATATGCTGTTCTCCAGGGGCATCCTCCGAATCAAAAAACTCAAGCAGTACAGGCATTATTATTGGAGCGGCAGTTGGTGGCTCTGTCATTGCAATTATAGCACTAATCATTGGAGTTTATGCTTTCCGGCAAAAGAAAAGAGCTGAAGATGCTGCAAAGAGGAGCGATCCTTTTGGTAAGATTTGGAACTATCTAATTAAATCATTTACTTATTACTTCAATCTTATGGTAGATGTTTGCTATCTTTCTTATTAATGCAGCATCCTGGGACTCGAACAAACATAGTGGTGCTGTACCACAGCTGACGGGAGCTAGATTTTTCTCATTTGAGGAGCTCAAAAAATGGACCAATAATTTTTCAGAAACCAATGATATTGGTTGTGGTGGTTATGGAAAGGTTAGCTTTTAGTGACATGCGCAACCCCCTCCCCACCACCGTCATCACAACTGACAATATCAATATATGAAGAAGTTTGTTTGTACCAGCTTCTCTCTCCCCTGAAAAGAAAATTTCTTGACTGCAATTGGAACTGTATTGAGTTTTTAAACTGTAGAAGTGTGCCTCTCCAGGTTTACAGAGGAACTCTTCCAAATGGAGAATTGGTTGCAATTAAAAGAGCTCTACAAGGGTCTATGCAGGGTGCACACGAGTTCAAAACTGAGATAGAGCTTCTCTCAAGGGTTCATCACAAGAACGTCGTTGGCCTTGCTGGCTTTTGTTTCGATCAAGCTGAACAGATGCTTGTGTACGAGTACATTCCTAATGGCAC</genome_strand>
        <mrna_strand>GGTGAAGTTGATAGTTAAGAAGTCTGAGTCTATGTCTATGCTGTTCTCCAGGGGCATCCTCCGAATCAAAAAAATCAAGTAGTACAGGCATTATTATTGGAGCAGCAGTTGGTGGTTCTGTCATTGCAATTATAGCACTAATCATTGGAGTTTATGCTTTCCGGCAAAAGAAAAGAGCTGAAGATGCTGCAAAGAGGAGCGATCCTTTTG.....................................................................................CATCCTGGGACGAGAATAAACATAGTGGTGCTGTTCCACAGTTGACAGGAGCTAGATTTTTCTCATTTGAGGAGCTCAAAAAATGGACCAATAATTTTTCAGAAACCAACGATATTGGTTGTGGTGGTTATGGAAAG.............................................................................................................................................................................GTTTACAGAGGAACTCTTCCAAATGGAGAATTGGTTGCAATTAAAAGAGCTCTACAAGGGTCTATGCAGGGTGCACATGAGTTCAAAACTGAGATAGAGCTTCTCTCTAGAGTTCATCACAAGAATGTCGTTGGCCTTGCTGGATTTTGTTTCGATCAAGCTGAACAGATGCTTGTGTACGAGTATATTCCTAATGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303006" ref_strand="+" ref_description="SGN-E303006 [cLEW-26-C8]">
      <seq>gactctccaaaagtccttgatgcaaacctttcaaaaccgtcaactgcccgtggaatcagtgggcctcagtaacccaacaaaaaatttggatgactaccttgtaatacacctgcaagtttttccatctacccaagattttttcaatcgaactggagtttctggaataggttttgtgcttagtaatcagactttcaagcccccatcatcatttggacctttcttcttcattggtgaaggctataaatactttgacggggcatcctccgaatcaaaaaactcaagcagtacaggcattattattggagcggcagttggtggctctgtcattgcaattatagcactaatcattggagtttatgctttccggcaaaagaaaagagctgaagatgctgcaaagaggagcgatccttttgcatcctgggactcgaacaaacatagtggtgctgtaccacagctgacgggagctagatttttctcatttgaggagctcaaaaaatggaccaataatttttcagaaaccaatgatattggttgtggtggttatggaaaggtttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="122109" stop="120707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121809" g_stop="121556" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121555" i_stop="121391" i_length="165">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121390" g_stop="121232" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="413" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121231" i_stop="121147" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121146" g_stop="121004" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="556" r_length="143" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E303006" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121809" e_stop="121556"/>
          <exon e_start="121390" e_stop="121232"/>
          <exon e_start="121146" e_stop="121004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCTCCAAAAGTCCTTGATGCAAACCTTTCAAAACCGTCAACTGCCCGTGGAATCAGTTTCCCTCAGTAACCCAACAAAAAATTTGGATGACTACCTTGTAATACACCTGCAAGTTTTTCCATCTACCCAAGATTTTTTCAATCGAACTGGAGTTTCTGGAATAGGTTTTGTGCTTAGTAATCAGACTTTCAAGCCCCCATCATCATTTGGACCTTTCTTCTTCATTGGTGAAGGCTATAAATACTTTGACGGTAATAAAACTAGTTCCTTTGCCTATTTATCACTCATCTCTCATCTACGACATATATGTGCAGCCTAATCTATAATTAATATAAATTGTAAGTGAGCCGTTGGAGCAGCATCTTAGTGAAGTTGATAGTTAAGAAGTCTGAGTCTATGTATATGCTGTTCTCCAGGGGCATCCTCCGAATCAAAAAACTCAAGCAGTACAGGCATTATTATTGGAGCGGCAGTTGGTGGCTCTGTCATTGCAATTATAGCACTAATCATTGGAGTTTATGCTTTCCGGCAAAAGAAAAGAGCTGAAGATGCTGCAAAGAGGAGCGATCCTTTTGGTAAGATTTGGAACTATCTAATTAAATCATTTACTTATTACTTCAATCTTATGGTAGATGTTTGCTATCTTTCTTATTAATGCAGCATCCTGGGACTCGAACAAACATAGTGGTGCTGTACCACAGCTGACGGGAGCTAGATTTTTCTCATTTGAGGAGCTCAAAAAATGGACCAATAATTTTTCAGAAACCAATGATATTGGTTGTGGTGGTTATGGAAAGGTTAGC</genome_strand>
        <mrna_strand>GACTCTCCAAAAGTCCTTGATGCAAACCTTTCAAAACCGTCAACTGCCCGTGGAATCAGTGGGCCTCAGTAACCCAACAAAAAATTTGGATGACTACCTTGTAATACACCTGCAAGTTTTTCCATCTACCCAAGATTTTTTCAATCGAACTGGAGTTTCTGGAATAGGTTTTGTGCTTAGTAATCAGACTTTCAAGCCCCCATCATCATTTGGACCTTTCTTCTTCATTGGTGAAGGCTATAAATACTTTGACG.....................................................................................................................................................................GGGCATCCTCCGAATCAAAAAACTCAAGCAGTACAGGCATTATTATTGGAGCGGCAGTTGGTGGCTCTGTCATTGCAATTATAGCACTAATCATTGGAGTTTATGCTTTCCGGCAAAAGAAAAGAGCTGAAGATGCTGCAAAGAGGAGCGATCCTTTTG.....................................................................................CATCCTGGGACTCGAACAAACATAGTGGTGCTGTACCACAGCTGACGGGAGCTAGATTTTTCTCATTTGAGGAGCTCAAAAAATGGACCAATAATTTTTCAGAAACCAATGATATTGGTTGTGGTGGTTATGGAAAGGTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367694" ref_strand="+" ref_description="SGN-E367694 [cLPT-14-J14]">
      <seq>cagctcattgatgtgcaaagaaatcttattgaatcatttactcaaagaccagggtacccctttcagataatgcttgcaggtaatcctttttgcaacgaaggaggagatgggacacaagattactgtgtcaaaactcaacaaactgagacatattcaaccccaccagagaattgcttgccaactgactgcagctctaatcgagtttctagtcctacctgtaaatgtgcttttccatatacaggaaacatagtcttcagagctccttccttttcaaacttgggaaatagaactacttatgagactctccaaaagtccttgatgcaaacctttcaaaaccgtcaactgcccgtggaatcagtttccctcagtaacccaacaaaaaatttggatgactaccttgtaatacacctgcaagtttttccatctacccaagattttttcaatcgaactggagtttctggaataggttctgtgcttagtaatcagactttcaagcccccatcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="122554" stop="121302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122254" g_stop="122184" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122183" i_stop="122038" i_length="146">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122037" g_stop="121602" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="507" r_length="436" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E367694" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122254" e_stop="122184"/>
          <exon e_start="122037" e_stop="121602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCATTGATGTGCAAAGAAATCTTATTGAATCATTTACTCAAAGACCAGGGTACCCCTTTCAGATAATGTAAGTTCTATTCCTTGATACTTCGAGCCATAAACCACTAAGTTGTTGAGAAACACATATGTTGGACAGTTCTGTTGCCTAGCTTATTATGAGATATGATTTATATCATTTTCATTAGCTCATTTCTTTACGTTTTCCCTCTGCAGGCTTGCAGGTAATCCTTTTTGCAACGAAGGAGGAGATGGGACACAAGATTACTGTGTCAAAACTCAACAAACTGAGACATATTCAACCCCACCAGAGAATTGCTTGCCAACTGACTGCAGCTCTAATCGAGTTTCTAGTCCTACCTGTAAATGTGCTTTTCCATATACAGGAAACATAGTCTTCAGAGCTCCTTCCTTTTCAAACTTGGGAAATAGAACTACTTATGAGACTCTCCAAAAGTCCTTGATGCAAACCTTTCAAAACCGTCAACTGCCCGTGGAATCAGTTTCCCTCAGTAACCCAACAAAAAATTTGGATGACTACCTTGTAATACACCTGCAAGTTTTTCCATCTACCCAAGATTTTTTCAATCGAACTGGAGTTTCTGGAATAGGTTTTGTGCTTAGTAATCAGACTTTCAAGCCCCCATCATCA</genome_strand>
        <mrna_strand>CAGCTCATTGATGTGCAAAGAAATCTTATTGAATCATTTACTCAAAGACCAGGGTACCCCTTTCAGATAAT..................................................................................................................................................GCTTGCAGGTAATCCTTTTTGCAACGAAGGAGGAGATGGGACACAAGATTACTGTGTCAAAACTCAACAAACTGAGACATATTCAACCCCACCAGAGAATTGCTTGCCAACTGACTGCAGCTCTAATCGAGTTTCTAGTCCTACCTGTAAATGTGCTTTTCCATATACAGGAAACATAGTCTTCAGAGCTCCTTCCTTTTCAAACTTGGGAAATAGAACTACTTATGAGACTCTCCAAAAGTCCTTGATGCAAACCTTTCAAAACCGTCAACTGCCCGTGGAATCAGTTTCCCTCAGTAACCCAACAAAAAATTTGGATGACTACCTTGTAATACACCTGCAAGTTTTTCCATCTACCCAAGATTTTTTCAATCGAACTGGAGTTTCTGGAATAGGTTCTGTGCTTAGTAATCAGACTTTCAAGCCCCCATCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413601" ref_strand="+" ref_description="SGN-E413601 [STM-18-K19]">
      <seq>aggagttgaaaggctctcttcctcagtcaattggaaaattgacaaagctatcaaatttgatccttgttggttgtggattttctggaccaataccagacaccataggatctctgacccggctggtttttctatctttgaactctaacaactttattggaggaatacctgctaccattggctatctgacagagctttattggctggatttagctgacaataggcttacaggaacaattccagtctctaatggaagcaatcctggtcttgatatgcttgttcacactaaacactttcactttgggaagaatcagctatccggtgaaattccagctagtcttttccattctaatctgtctctgatacatctgctagttgagaacaacaagtttactggaaatatccctgatacattaggacatgtccagacgatggaagtgcttcgtcttgacaggaattcatttagtggatctgtgccacaaaatctcaacaatctcacacatgtcaatgaactacacatgtcaaacaataattttaatggtcttttgccgaatctcactggcatgaatgtcctcaactacttggacatgagcaataattcatttaatgcatcagattttccatcatggatcccgaacctgatatctttaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="124846" stop="122445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124546" g_stop="124489" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124488" i_stop="124401" i_length="88">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124400" g_stop="124329" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="130" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124328" i_stop="123787" i_length="542">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123786" g_stop="123625" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="292" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123624" i_stop="123553" i_length="72">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123552" g_stop="123478" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="367" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123477" i_stop="123357" i_length="121">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123356" g_stop="123285" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="439" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123284" i_stop="123180" i_length="105">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.462" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123179" g_stop="123108" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="511" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123107" i_stop="123023" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123022" g_stop="122954" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="580" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="122953" i_stop="122816" i_length="138">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="122815" g_stop="122745" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="651" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E413601" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124546" e_stop="124489"/>
          <exon e_start="124400" e_stop="124329"/>
          <exon e_start="123786" e_stop="123625"/>
          <exon e_start="123552" e_stop="123478"/>
          <exon e_start="123356" e_stop="123285"/>
          <exon e_start="123179" e_stop="123108"/>
          <exon e_start="123022" e_stop="122954"/>
          <exon e_start="122815" e_stop="122745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTTGAAAGGATCTCTTCCTCAGTCTATTGGAAAATTGACAAAGCTATCAAATTTGTAAGTGAATGTGAATTAACATCTTGCATTCGTTTACCAGCTAATCTCGTGATGATATGCTAATGATCTTTTCTTAATTTCATGACAGGATCCTTGTTGGTTGTGGATTTTCGGGACCAATACCAGACACCATAGGATCTCTGACCCGGCTGGTTTTTCTGTAAGCATTCTGTGGTACTCGTTGTAGTTTGAATGCGTAACCAGTATGTGACATATCTTGCAAGAATGTAACGAAGTTTGCTCATTTATTTGGCTTAAGGTGTTTGACCTACATAAGATGATGGCTCAGGGATTTTATATTTATATCAGCTTAAACTATGATTTCTTAGCTTTTTTGTATTGTGTACATAAGACCTGATCATTTTTCATTTTTTGTTTGAACAAATGAAGTGATAAGCATCTCGAATGAACGATTTCATGACAGAAAAAGAAAATGGTCATAGATGAGCTGCTTAAAATGACTAATGTAATGTGTGCTTTGATGCTAGCTGTACTCAAAACTTTGGTTCATCTCTAAGAAAGGCAATACGATTTGAAACAGTGAAATCAGTTCATGAGGAGTTTAATTCATACTGCTTTTCTTGTGTTTACTAGCTTATCAAATCTGAATAGTTGTGTTTTTATCATATCTATCTGCATATGATTTCTTTCAATCCTTCTTCTCGTATACGCTCTAAAACAGTCCCACTCTGTACTCTGCAGATCTTTGAACTCTAACAACTTTATTGGAGGAATACCTGCTACCGTTGGCTATCTGACAGAGCTTTATTGGCTGGATTTAGCTGACAATAAGCTTACAGGAACAATTCCAGTCTCTAATGGGAGCAGTCCTGGTCTTGATTTGCTTGTTCACACTAAACACTTGTACGCTTCTCCTTTTTCTTGATATTGTTTTTGTCTCTCAACTGCATTTTCTAAGATTCTACATTTCTTCAGTCACTTTGGGAAGAATCAGCTATCCGGTGAAATTCCAGCTGGTCTTTTCCATTCTAATCTGTCCCTTATACATCTGTAAGTCCCAATCTTGTTTCTGAAAGTAGTCATGCGGAAGATCTTGATAATTATATCATAAAAAACTTTCCCTTCGACCATGCTTTCCGGTTTCCTCATGGTGGTATATTCTAACTTCTAGGCTAGTTGAGAACAACAAGTTTACTGGAAACATCCCGGATACATTAGGACTTGTCCAGACGATGGAAGTGCTGTAAGTATTGTTATCTTGTGCTTTCCCTTTGTACTCTAGTAAAGTTGCTTGACTCTATATACCTTATGAATTGTTTGTGAACTAAGCTACTGGTCCTGTCAATAGTCGTCTTGACAGGAATTCACTTAGTGGATCTGTGCCACAAAATCTCAACAATCTCACACACGTCAATGAACTGTAAGTAGAAACTGAAATAATTTTCTGAACTTACTGCATCTCCTTATGATTTCCTGATGTAGTATATATTGACTATATATTACAGACACATGTCGAACAATAATTTTAATGGTCTTTTGCCGAATCTTACTGGCATGAATGTCCTCAACTACTTGTAAGTTGCTTATCTTAAGTTTTTTGCCTTTATCCCTTTGAGTTGATTATCCATTATTCCTCAACGTTGCGCTGTAAATATTTCACCTCAATCTATTTGTTCTGTAAATATCACCATCACGGGAACTTATTTTTGCAGGGACATGAGCAATAATTCATTTAATGCTTCAGATTTTCCATCATGGATCCCGAACCTGATATCTTTAACAT</genome_strand>
        <mrna_strand>AGGAGTTGAAAGGCTCTCTTCCTCAGTCAATTGGAAAATTGACAAAGCTATCAAATTT........................................................................................GATCCTTGTTGGTTGTGGATTTTCTGGACCAATACCAGACACCATAGGATCTCTGACCCGGCTGGTTTTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGAACTCTAACAACTTTATTGGAGGAATACCTGCTACCATTGGCTATCTGACAGAGCTTTATTGGCTGGATTTAGCTGACAATAGGCTTACAGGAACAATTCCAGTCTCTAATGGAAGCAATCCTGGTCTTGATATGCTTGTTCACACTAAACACTT........................................................................TCACTTTGGGAAGAATCAGCTATCCGGTGAAATTCCAGCTAGTCTTTTCCATTCTAATCTGTCTCTGATACATCT.........................................................................................................................GCTAGTTGAGAACAACAAGTTTACTGGAAATATCCCTGATACATTAGGACATGTCCAGACGATGGAAGTGCT.........................................................................................................TCGTCTTGACAGGAATTCATTTAGTGGATCTGTGCCACAAAATCTCAACAATCTCACACATGTCAATGAACT.....................................................................................ACACATGTCAAACAATAATTTTAATGGTCTTTTGCCGAATCTCACTGGCATGAATGTCCTCAACTACTT..........................................................................................................................................GGACATGAGCAATAATTCATTTAATGCATCAGATTTTCCATCATGGATCCCGAACCTGATATCTTTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472382" ref_strand="+" ref_description="SGN-E472382 [cSTB-28-D15]">
      <seq>aggagttgaaaggatctcttcctcagtcaattggaaaattgacaaagctatcaaatttgatccttgttggttgtggattttctggaccaataccatacaccataggatctctgacccggctggtttttctatgtttgaactctaacaactttattggaggaatacctgctaccattggctatctgacacagctttattggctggatttacctgacaataggcttacaggaacaattccagtctctaatggaagcaatcctggtcttgatatgcttgttcacactaaacactttcactttgggaagaatcagctatccggtgaaattccagctagtctttaacattctaatctgtctctgatacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="124846" stop="123179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124546" g_stop="124489" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124488" i_stop="124401" i_length="88">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124400" g_stop="124329" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="130" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124328" i_stop="123787" i_length="542">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123786" g_stop="123625" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="292" r_length="162" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123624" i_stop="123553" i_length="72">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123552" g_stop="123479" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="366" r_length="74" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E472382" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124546" e_stop="124489"/>
          <exon e_start="124400" e_stop="124329"/>
          <exon e_start="123786" e_stop="123625"/>
          <exon e_start="123552" e_stop="123479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTTGAAAGGATCTCTTCCTCAGTCTATTGGAAAATTGACAAAGCTATCAAATTTGTAAGTGAATGTGAATTAACATCTTGCATTCGTTTACCAGCTAATCTCGTGATGATATGCTAATGATCTTTTCTTAATTTCATGACAGGATCCTTGTTGGTTGTGGATTTTCGGGACCAATACCAGACACCATAGGATCTCTGACCCGGCTGGTTTTTCTGTAAGCATTCTGTGGTACTCGTTGTAGTTTGAATGCGTAACCAGTATGTGACATATCTTGCAAGAATGTAACGAAGTTTGCTCATTTATTTGGCTTAAGGTGTTTGACCTACATAAGATGATGGCTCAGGGATTTTATATTTATATCAGCTTAAACTATGATTTCTTAGCTTTTTTGTATTGTGTACATAAGACCTGATCATTTTTCATTTTTTGTTTGAACAAATGAAGTGATAAGCATCTCGAATGAACGATTTCATGACAGAAAAAGAAAATGGTCATAGATGAGCTGCTTAAAATGACTAATGTAATGTGTGCTTTGATGCTAGCTGTACTCAAAACTTTGGTTCATCTCTAAGAAAGGCAATACGATTTGAAACAGTGAAATCAGTTCATGAGGAGTTTAATTCATACTGCTTTTCTTGTGTTTACTAGCTTATCAAATCTGAATAGTTGTGTTTTTATCATATCTATCTGCATATGATTTCTTTCAATCCTTCTTCTCGTATACGCTCTAAAACAGTCCCACTCTGTACTCTGCAGATCTTTGAACTCTAACAACTTTATTGGAGGAATACCTGCTACCGTTGGCTATCTGACAGAGCTTTATTGGCTGGATTTAGCTGACAATAAGCTTACAGGAACAATTCCAGTCTCTAATGGGAGCAGTCCTGGTCTTGATTTGCTTGTTCACACTAAACACTTGTACGCTTCTCCTTTTTCTTGATATTGTTTTTGTCTCTCAACTGCATTTTCTAAGATTCTACATTTCTTCAGTCACTTTGGGAAGAATCAGCTATCCGGTGAAATTCCAGCTGGTCTTTTCCATTCTAATCTGTCCCTTATACATC</genome_strand>
        <mrna_strand>AGGAGTTGAAAGGATCTCTTCCTCAGTCAATTGGAAAATTGACAAAGCTATCAAATTT........................................................................................GATCCTTGTTGGTTGTGGATTTTCTGGACCAATACCATACACCATAGGATCTCTGACCCGGCTGGTTTTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGAACTCTAACAACTTTATTGGAGGAATACCTGCTACCATTGGCTATCTGACACAGCTTTATTGGCTGGATTTACCTGACAATAGGCTTACAGGAACAATTCCAGTCTCTAATGGAAGCAATCCTGGTCTTGATATGCTTGTTCACACTAAACACTT........................................................................TCACTTTGGGAAGAATCAGCTATCCGGTGAAATTCCAGCTAGTCTTTAACATTCTAATCTGTCTCTGATACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478448" ref_strand="+" ref_description="SGN-E478448 [cSTD-4-N24]">
      <seq>gttattttgagagcaaaaaagtgcagtggctgtcccttagatgaaccaacaaagattggtggagagcctccaacaattccgccacattttgaaaacatgcatagcccagagagacctcttaactggcaaatctctgcataccctttacatcaaatcactcattccaccgtctacttacttctccaaccatttcatccttctctactctaagtgtggccttcttaccactgctcgcagggcttttgaagctacccctgaacccaatgtcttctccttcaatgctatccttaatgcctatgctaaagaagctcagccccaccttgcccaccagctgtttgataaaattccccaaccggatattgtttcttacaacacccttatatctgcttatgctgatcttggttacaccctgcctgctcttcggctctttcttgatttgaaggacacgggtcttgctatggatgggtttactctttcagctgctatcacggctgcgaatgacaatgttgatttcattacccagcttcattcattgtctatatccgctgggcttgactcttatgcttctgttaataatactctcatcacgtattatagcaaaaatgggcatcttgattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="134151" stop="132933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133851" g_stop="133233" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E478448" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133851" e_stop="133233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTTTGAGAGC-AAAAAGTGCAGTGACTGTCCCATAGATGAACCAACAAAGATTGGTGGAGAGCCTCCAACAATTCCGCCACATTTTGAAAACATGCATAGCCCAGAGAGACCTCTTTACCGGCAAATCTCTGCATACGCTTTACATCAAAGCACTCATTCCACCGTCTACTTACTTCTCCAACCATTTCATCCTTCTCTATTCTAAGTGTGGCCTTCTTACCGCTGCTCGCAGGGCTTTTGAAGCTACCCCTGAACCCAATGTTTTTTCCTTCAATGCTATCCTCAATGCATATGCTAAAGAAGCTCAGCCTCATCTTGCCCACCAGCTGTTTGATAAAATTCCCCAACCGGATATTGTTTCTTACAACACCCTTATATCTGCTTATGCTGATCTTGGTTACACCCTGCCTGCTCTTCGGCTCTTTCTTGATTTGAAGGACACGGGTCTTGTTATGGATGGATTTACTCTTTCAGCTGCTATCACGGCTGCTAATGACAATGTTGATTTCATTACTCAGCTTCACTCATTGTCTATATCTGCTGGGCTTGACTCTTATGCTTCTGTTAATAATACTCTCATCACGTATTATGGCAAAAATGGGCATCTTGATTATG</genome_strand>
        <mrna_strand>GTTATTTTGAGAGCAAAAAAGTGCAGTGGCTGTCCCTTAGATGAACCAACAAAGATTGGTGGAGAGCCTCCAACAATTCCGCCACATTTTGAAAACATGCATAGCCCAGAGAGACCTCTTAACTGGCAAATCTCTGCATACCCTTTACATCAAATCACTCATTCCACCGTCTACTTACTTCTCCAACCATTTCATCCTTCTCTACTCTAAGTGTGGCCTTCTTACCACTGCTCGCAGGGCTTTTGAAGCTACCCCTGAACCCAATGTCTTCTCCTTCAATGCTATCCTTAATGCCTATGCTAAAGAAGCTCAGCCCCACCTTGCCCACCAGCTGTTTGATAAAATTCCCCAACCGGATATTGTTTCTTACAACACCCTTATATCTGCTTATGCTGATCTTGGTTACACCCTGCCTGCTCTTCGGCTCTTTCTTGATTTGAAGGACACGGGTCTTGCTATGGATGGGTTTACTCTTTCAGCTGCTATCACGGCTGCGAATGACAATGTTGATTTCATTACCCAGCTTCATTCATTGTCTATATCCGCTGGGCTTGACTCTTATGCTTCTGTTAATAATACTCTCATCACGTATTATAGCAAAAATGGGCATCTTGATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543821" ref_strand="+" ref_description="SGN-E543821 [TUS-65-N10](-)">
      <seq>aaggtacattgggatatttggatcctgaatattacatgagccaacagttgactgagaaaagtgatgtatatagctttggggtggtgctgctcgagctgattactgcaagagctccaatagaacgaggaaaacacatcgtgagattggttgcagagaccatatatgattcaaaagataacagcaaactctaccaattaattgatccaagaataggtccaggttcaaaactcgaaggtgttgatagattattcacattgggaatgagatgtgtaaatgaatccggggctgagaggccttccatgggagaggctgtgaaagaaattgagagtattcttggactggccagcttgagcaagtatactgaaggcgacctcacttcgtctagctacgaggacacaactcaagtcagtcttgacgatttttataatgacaaggcttttgattacagtggtaaattcccttctggtggcatgaacaccacttattgaaactaccaacgactataaatttgagttacataagtttgttattattgagcatatgatgactatgaattacatttcgtttgattgtttattactagtgatgcttctgctctaatactagctatttcagaagtcagaattacaaatggcttcttcagattaagtgatcttcatattgatgtttgatcgatataaagtaagatcatatactgtacaggactacagatgagttttatagctcaaaactctaaactgtaacaaataaagaattttcttgttacactgccctttgcagctatgttaacaagcacaacaaatttggaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="135242" stop="133841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135016" g_stop="135006" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.727"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135005" i_stop="134939" i_length="67">
            <donor d_prob="0.063" d_score="0.00"/>
            <acceptor a_prob="0.480" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134938" g_stop="134145" g_length="794"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="805" r_length="794" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="808" polyA_stop="831"/>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E543821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135016" e_stop="135006"/>
          <exon e_start="134938" e_stop="134145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACATTTGTAATTCCATAATGCACCATCCATACTGCTTCGAAATCCCATTTTCTAAGAATGTTCCTATGTATAGGGATATTTGGATCCTGAATATTACATGAGCCAACAGTTGACTGAGAAAAGTGATGTATATAGCTTTGGGGTGGTGCTGCTCGAGCTGATTACTGCAAGAGCTCCAATAGAACGAGGAAAACACATCGTGAGATTGGTTGCAGAGACCATATATGATTCAAAAGATAACAGCAAACTCTACCAATTAATTGATCCAAGAATAGGTCCAGGTTCAAAACTCGAAGGTGTTGATAGATTATTCACATTGGGAATGAGATGTGTAAATGAATCCGGGGCTGAGAGGCCTTCCATGGGAGAGGCTGTGAAAGAAATTGAGAGTATTCTTGGACTGGCCAGCTTGAGCAAGTATACTGAAGGCGACCTCACTTCGTCTAGCTACGAGGACACAACTCAAGTCAGTCTTGACGATTTTTATAATGACAAGGCTTTTGATTACAGTGGTAAATTCCCTTCTGGTGGCATGAACACCACTTATTGAAACTACCAACGACTATAAATTTGAGTTACATAAGTTTGTTATTATTGAGCATATGATGACTATGAATTACATTTCGTTTGATTGTTTATTACTAGTGATGCTTCTGCTCTAATACTAGCTATTTCAGAAGTCAGAATTACAAATGGCTTCTTCAGATTAAGTGATCTTCATATTGATGTTTGATCGATATAAAGTAAGATCATATACTGTACAGGACTACAGATGAGTTTTATAGCTCAAAACTCTAAACTGTAACAAATAAAGAATTTTCTTGTTACACTGCCCTTTGCAGCTATGTTAACAAGCACAACAAATTT</genome_strand>
        <mrna_strand>AAGGTACATTG...................................................................GGATATTTGGATCCTGAATATTACATGAGCCAACAGTTGACTGAGAAAAGTGATGTATATAGCTTTGGGGTGGTGCTGCTCGAGCTGATTACTGCAAGAGCTCCAATAGAACGAGGAAAACACATCGTGAGATTGGTTGCAGAGACCATATATGATTCAAAAGATAACAGCAAACTCTACCAATTAATTGATCCAAGAATAGGTCCAGGTTCAAAACTCGAAGGTGTTGATAGATTATTCACATTGGGAATGAGATGTGTAAATGAATCCGGGGCTGAGAGGCCTTCCATGGGAGAGGCTGTGAAAGAAATTGAGAGTATTCTTGGACTGGCCAGCTTGAGCAAGTATACTGAAGGCGACCTCACTTCGTCTAGCTACGAGGACACAACTCAAGTCAGTCTTGACGATTTTTATAATGACAAGGCTTTTGATTACAGTGGTAAATTCCCTTCTGGTGGCATGAACACCACTTATTGAAACTACCAACGACTATAAATTTGAGTTACATAAGTTTGTTATTATTGAGCATATGATGACTATGAATTACATTTCGTTTGATTGTTTATTACTAGTGATGCTTCTGCTCTAATACTAGCTATTTCAGAAGTCAGAATTACAAATGGCTTCTTCAGATTAAGTGATCTTCATATTGATGTTTGATCGATATAAAGTAAGATCATATACTGTACAGGACTACAGATGAGTTTTATAGCTCAAAACTCTAAACTGTAACAAATAAAGAATTTTCTTGTTACACTGCCCTTTGCAGCTATGTTAACAAGCACAACAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543822" ref_strand="+" ref_description="SGN-E543822 [TUS-65-N10]">
      <seq>catttaactgcaaaagttgctgattttggcctatcaaaacttttgagagacgaagacaagggccatgtcaccactcaagtcaaaggtacattgggatatttggatcctgaatattacatgagccaacagttgactgagaaaagtgatgtatatagctttggggtggtgctgctcgagctgattactgcaagagctccaatagaacgaggaaaacacatcgtgagattggttgcagagaccatatatgattcaaaagataacagcaaactctaccaattaattgatccaagaataggtccaggttcaaaactcgaaggtgttgatagattattcacattgggaatgagatgtgtaaatgaatccggggctgagaggccttccatgggagaggctgtgaaagaaattgagagtattcttggactggccagcttgagcaagtatactgaaggcgacctcacttcgtctagctacgaggacacaactcaagtcagtcttgacgatttttataatgacaaggcttttgattacagtggtaaattcccttctggtggcatgaacaccacttattgaaactaccaacgactataaatttgagttacataagtttgttattattgagcatatgatgactatgaattacatttcgtttgattgtttattactagtgatgcttctgctctaatactagctatttcagaagtcagaattacaaatggcttcttcagattaagtgatcttcatattgatgtttgatcgatataaagtaagatcatatactgtacaggactacagatgagttttatagctcagaactctaaactgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="135653" stop="133908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135353" g_stop="135261" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135260" i_stop="134939" i_length="322">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.480" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134938" g_stop="134208" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="824" r_length="731" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E543822" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135353" e_stop="135261"/>
          <exon e_start="134938" e_stop="134208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTAACTGCAAAAGTTGCTGATTTTGGCCTATCAAAACTTTTGAGAGACGAAGACAAGGGCCATGTCACCACTCAAGTCAAAGGTACATTGGTGAGTATTACTACCTCAAACCTTGATGGATCAATTTGAGCTGTCTTATAATTCTTATGGATATGCATATATCAAACTCTACAACTTGAAGGCGATTGGTATATCTCCAAGGCTAATATTCTTGATCGTGAAATGACTGAACAACATGAAGAAGGATCATTTGGAATCCAATTAAAGAATTAGTCACCTCATGTTATTCATTGTTTAACATGGTGATATACTGATAAATGCAAATTTTGATTTCAAAGAACATTTGTAATTCCATAATGCACCATCCATACTGCTTCGAAATCCCATTTTCTAAGAATGTTCCTATGTATAGGGATATTTGGATCCTGAATATTACATGAGCCAACAGTTGACTGAGAAAAGTGATGTATATAGCTTTGGGGTGGTGCTGCTCGAGCTGATTACTGCAAGAGCTCCAATAGAACGAGGAAAACACATCGTGAGATTGGTTGCAGAGACCATATATGATTCAAAAGATAACAGCAAACTCTACCAATTAATTGATCCAAGAATAGGTCCAGGTTCAAAACTCGAAGGTGTTGATAGATTATTCACATTGGGAATGAGATGTGTAAATGAATCCGGGGCTGAGAGGCCTTCCATGGGAGAGGCTGTGAAAGAAATTGAGAGTATTCTTGGACTGGCCAGCTTGAGCAAGTATACTGAAGGCGACCTCACTTCGTCTAGCTACGAGGACACAACTCAAGTCAGTCTTGACGATTTTTATAATGACAAGGCTTTTGATTACAGTGGTAAATTCCCTTCTGGTGGCATGAACACCACTTATTGAAACTACCAACGACTATAAATTTGAGTTACATAAGTTTGTTATTATTGAGCATATGATGACTATGAATTACATTTCGTTTGATTGTTTATTACTAGTGATGCTTCTGCTCTAATACTAGCTATTTCAGAAGTCAGAATTACAAATGGCTTCTTCAGATTAAGTGATCTTCATATTGATGTTTGATCGATATAAAGTAAGATCATATACTGTACAGGACTACAGATGAGTTTTATAGCTCAAAACTCTAAACTGTA</genome_strand>
        <mrna_strand>CATTTAACTGCAAAAGTTGCTGATTTTGGCCTATCAAAACTTTTGAGAGACGAAGACAAGGGCCATGTCACCACTCAAGTCAAAGGTACATTG..................................................................................................................................................................................................................................................................................................................................GGATATTTGGATCCTGAATATTACATGAGCCAACAGTTGACTGAGAAAAGTGATGTATATAGCTTTGGGGTGGTGCTGCTCGAGCTGATTACTGCAAGAGCTCCAATAGAACGAGGAAAACACATCGTGAGATTGGTTGCAGAGACCATATATGATTCAAAAGATAACAGCAAACTCTACCAATTAATTGATCCAAGAATAGGTCCAGGTTCAAAACTCGAAGGTGTTGATAGATTATTCACATTGGGAATGAGATGTGTAAATGAATCCGGGGCTGAGAGGCCTTCCATGGGAGAGGCTGTGAAAGAAATTGAGAGTATTCTTGGACTGGCCAGCTTGAGCAAGTATACTGAAGGCGACCTCACTTCGTCTAGCTACGAGGACACAACTCAAGTCAGTCTTGACGATTTTTATAATGACAAGGCTTTTGATTACAGTGGTAAATTCCCTTCTGGTGGCATGAACACCACTTATTGAAACTACCAACGACTATAAATTTGAGTTACATAAGTTTGTTATTATTGAGCATATGATGACTATGAATTACATTTCGTTTGATTGTTTATTACTAGTGATGCTTCTGCTCTAATACTAGCTATTTCAGAAGTCAGAATTACAAATGGCTTCTTCAGATTAAGTGATCTTCATATTGATGTTTGATCGATATAAAGTAAGATCATATACTGTACAGGACTACAGATGAGTTTTATAGCTCAGAACTCTAAACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306588" ref_strand="+" ref_description="SGN-E306588 [cLEX-13-L24]">
      <seq>atttaactgcaaaagttgctgattttggcctatcaaaacttttgagagacgaagacaagggccatgtcaccactcaagtcaaaggtacattgggatatttggatcctgaatattacatgagccaacagttgactgagaaaagtgatgtatatagctttggggtggtgctgctcgagctgattactgcaagagctccaatagaacgaggaaaacacatcgtgagattggttgcagagaccatatatgattcaaaagataacagcaaactctaccaattaattgatccaagaataggtccaggttcaaaactcgaaggtgttgatagattattcacattgggaatgagatgtgtaaatgaatccggggctgagaggccttccatgggagaggctgtgaaagaaattgagagtattcttggactggccagcttgagcaagtatactgaaggcgacctcacttcgtctagctacgaggacacaactcaagtcagtcttgacgatttttataatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="135652" stop="134220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135352" g_stop="135261" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135260" i_stop="134939" i_length="322">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.480" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134938" g_stop="134520" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="511" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E306588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135352" e_stop="135261"/>
          <exon e_start="134938" e_stop="134520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAACTGCAAAAGTTGCTGATTTTGGCCTATCAAAACTTTTGAGAGACGAAGACAAGGGCCATGTCACCACTCAAGTCAAAGGTACATTGGTGAGTATTACTACCTCAAACCTTGATGGATCAATTTGAGCTGTCTTATAATTCTTATGGATATGCATATATCAAACTCTACAACTTGAAGGCGATTGGTATATCTCCAAGGCTAATATTCTTGATCGTGAAATGACTGAACAACATGAAGAAGGATCATTTGGAATCCAATTAAAGAATTAGTCACCTCATGTTATTCATTGTTTAACATGGTGATATACTGATAAATGCAAATTTTGATTTCAAAGAACATTTGTAATTCCATAATGCACCATCCATACTGCTTCGAAATCCCATTTTCTAAGAATGTTCCTATGTATAGGGATATTTGGATCCTGAATATTACATGAGCCAACAGTTGACTGAGAAAAGTGATGTATATAGCTTTGGGGTGGTGCTGCTCGAGCTGATTACTGCAAGAGCTCCAATAGAACGAGGAAAACACATCGTGAGATTGGTTGCAGAGACCATATATGATTCAAAAGATAACAGCAAACTCTACCAATTAATTGATCCAAGAATAGGTCCAGGTTCAAAACTCGAAGGTGTTGATAGATTATTCACATTGGGAATGAGATGTGTAAATGAATCCGGGGCTGAGAGGCCTTCCATGGGAGAGGCTGTGAAAGAAATTGAGAGTATTCTTGGACTGGCCAGCTTGAGCAAGTATACTGAAGGCGACCTCACTTCGTCTAGCTACGAGGACACAACTCAAGTCAGTCTTGACGATTTTTATAATGA</genome_strand>
        <mrna_strand>ATTTAACTGCAAAAGTTGCTGATTTTGGCCTATCAAAACTTTTGAGAGACGAAGACAAGGGCCATGTCACCACTCAAGTCAAAGGTACATTG..................................................................................................................................................................................................................................................................................................................................GGATATTTGGATCCTGAATATTACATGAGCCAACAGTTGACTGAGAAAAGTGATGTATATAGCTTTGGGGTGGTGCTGCTCGAGCTGATTACTGCAAGAGCTCCAATAGAACGAGGAAAACACATCGTGAGATTGGTTGCAGAGACCATATATGATTCAAAAGATAACAGCAAACTCTACCAATTAATTGATCCAAGAATAGGTCCAGGTTCAAAACTCGAAGGTGTTGATAGATTATTCACATTGGGAATGAGATGTGTAAATGAATCCGGGGCTGAGAGGCCTTCCATGGGAGAGGCTGTGAAAGAAATTGAGAGTATTCTTGGACTGGCCAGCTTGAGCAAGTATACTGAAGGCGACCTCACTTCGTCTAGCTACGAGGACACAACTCAAGTCAGTCTTGACGATTTTTATAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576585" ref_strand="+" ref_description="SGN-E576585 [59828]">
      <seq>gttacctgctcaaccggaatcctttccaactccaatattttggaccctttgtctttacttctgaaagttattgttgctttgcagacggaaagaagaagtcatcatcacgtactggtatcatcattggagtatcggttggttgtgcagtgcttgtgctcttaacactttgtgctggcctttatgcttttcgccagagaaaaatggcaaaaagagctggtcatagcagtaacccttttgaatcttgggaccgtgatacgagtggtgctgttccacaacttaaaggagcaagatggttctcatttgatgagattaggaagtgcacaaacaatttttcagaatctaactgcattggatctgggggctatgggaaggtctacaaaggaactcttactgctggggaggtagttgcaattaaaagagcacagcatggatcaatgcagggggcttttgagttcaaaacagagattgagctattgtcaaggatacatcacaagaatgttgtaagcctggttggattttgttatgagcaaggcgaacaaatgctggtttatgagtacattccaaagggtactctaagggaaagtctctcagtcaagccaaaattccaattggagtggacgaggagacttaggatagcccttgatgctgctagaggtttagcatacttgcatgagcttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="-" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="138079" stop="135108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137779" g_stop="137696" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137695" i_stop="137575" i_length="121">
            <donor d_prob="0.570" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137574" g_stop="137422" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="237" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137421" i_stop="137318" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137317" g_stop="137184" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="371" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137183" i_stop="136111" i_length="1073">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136110" g_stop="135891" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="591" r_length="220" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135890" i_stop="135497" i_length="394">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135496" g_stop="135408" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="680" r_length="89" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="-" ref_id="SGN-E576585" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137779" e_stop="137696"/>
          <exon e_start="137574" e_stop="137422"/>
          <exon e_start="137317" e_stop="137184"/>
          <exon e_start="136110" e_stop="135891"/>
          <exon e_start="135496" e_stop="135408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACCTGCTCAACCGGAATCCTTTCCAACTCCAATATTTTGGACCCTTTTTCTTTACTTCTGAAAGTTATTGTTGCTTTGCAGGTGACTGAACATGGTTTTAGCAAAAAGAAACAATCTTTTCTCTTTTTCTTCTCAAATTCTTTTCTGGATAGATATGCGATTCTTATCTAGCTTAACATGTTTACTTATTTTTATGATTTAGACGGAAATAAGAAGTCATCATCACATACTGGTATCATCATTGGAGTATCGGTTGGTTGTGCAGTGCTTGTGCTCTTAACATTTTGTGCTGGCCTTTATGCCTTTCGCCAGAGAAAAATGGCAAAAAGAGCTGGTCATAGCAGTAACCCTTTTGGTAAGATCAGTTTTTCTTAGATCTGCACCATTTCGACATTACTATTTTTTAGCATTTTAGTGGTGTTATTTTTTCCTCCCAATGATGTCATCATGTGAATACAGAATCTTGGGACCGTGATACAAGTGGTGCTGTGCCACAACTTAAAGGAGCAAGATGGTTCTCATTTGATGAGATTAGGAAGTGCACAAACAATTTTTCAGAATCTAACTGCATTGGATCTGGGGGCTATGGGAAGGTTTACAATTTCTCTCTTTCTTTGAGCTGTTCCTGCTATAAAGTTCAGCACATATTTAGTGTACTTAAGGTCTTACCTTTTCCCCATACCAACGAATGAACAACATATTGCCCATCTTATGACACAGTGGCATAAATTCGCTCTAACTACCATTTTAAAATGCAACGATGGTCACAAGCTCTTGACTTGTTTGATCTTTGCTCCAACTAGGGGTGGGCAGTGTATGTGTTTTTAAAATGTTTGGTAATCGGTTTTCATATGAAGAATATCGAAATACCGGATACCATATCGAAGTACATAGTTACATATACAATTTATATATCTTATATAGTACTAGCAAATATATAAAATAGTATTAGTACAAAACTAATTATTCAGACGTTGGAACTTCGACTATCTTTATTGAAATGTCCTTTTTGTATAATTGATTAACGAAGGGAATTGCATGTTTTTACTTTCTTTCAATATTTCTACATGTGTAAGGTGTTAGTATGGTATAATTGAGATGGTTTTGAAAAGCCGAAGTCATAATTATGAGTATACGTAAGTTGAGTCGAACAAACTATGGTTACGGATTTACTATACTCAAAAATACCGAAATCCAACTTAAAAATACCAAACCATACCGAATTAGTTTGGTATGGTAATGGTATAGATTATATTTTTAATAACCAAAGTTACTGAACCGCAGTTTCCGATATTGTACCATGCCCCACCCCTAGCTCCAACTATCATACTAAATAAACCTGTAGAATTTTTAGACAGTAAGTACATTTAAACATCTGGTACACATAAATGAGCAGATGACGAGGAAATTTTTTGAATGAAGTAGTTATATGTCGATATGGCATTAGCATCTTGCACATGGGATCACAAACTTCCTCTATAGATTCACATATTCTAAAGAAAAGTACGCGTTGCCTATATGGTGAAATAGGTAGAAGTGTTTAAGTGAATGCCACAATCTACACTAACTCTTTGCATGGTACTTAAATACTGCATCTTTCACACTTTTTTGCTAATTTATTTGTAGCATGTCAAATTTTCCAGACTGATACATGTTGCATCAACAGGTCTTCAAAGGAACTCTTACTGCTGGGGAGGTAGTTGCAATTAAAAGAGCACAACATGGATCAATGCAGGGGGCTTTTGAGTTCAAAACAGAGATTGAGCTATTGTCGAGGATACATCACAAGAATGTTGTAAGCCTGGTTGGATTTTGTTATGAGCAAGGCGAACAAATGCTGGTTTATGAGTACATTCCAAAGGGTACTCTAAGGGAAAGTCTCTCAGGTAAAAATATTTTTCTGCATTCATCATTTCATATGTTTGCTTCTGAGGAAGCAGATGCTAAGTCCAGTCCAATCTGGCAAATAAGAAAGATTGATTGTTCTTCACTAAAACAATATCGATCTGTCCACTGAACTGTCTTGTTCATACAGCGGAAAGTGTTTTATTTACCTTTGTGTAAAATTGAATTCATTATATTGCTTCAACTCCTTTATCAGACCTGCTAATTTATATGTTTATTCAGCCATTGTCCTCCAAGGAATAACATTCCTAACTGAAACTCTCTCCATCACCATCATGGATTTTCTCTAGTATGATACGAGAATTAATATCACAGTGTTTGGGCGTATATAAAAATTTAATTTGGTTATTCTTAATCTGCATATGGCTCTTGCAGTCAAGCCAAAATTCCAGTTGGAGTGGACAAGGAGACTTAAGATAGCCCTTGATGCTGCTAGAGGTTTAGCATACTTGCATGAGCTTGCA</genome_strand>
        <mrna_strand>GTTACCTGCTCAACCGGAATCCTTTCCAACTCCAATATTTTGGACCCTTTGTCTTTACTTCTGAAAGTTATTGTTGCTTTGCAG.........................................................................................................................ACGGAAAGAAGAAGTCATCATCACGTACTGGTATCATCATTGGAGTATCGGTTGGTTGTGCAGTGCTTGTGCTCTTAACACTTTGTGCTGGCCTTTATGCTTTTCGCCAGAGAAAAATGGCAAAAAGAGCTGGTCATAGCAGTAACCCTTTTG........................................................................................................AATCTTGGGACCGTGATACGAGTGGTGCTGTTCCACAACTTAAAGGAGCAAGATGGTTCTCATTTGATGAGATTAGGAAGTGCACAAACAATTTTTCAGAATCTAACTGCATTGGATCTGGGGGCTATGGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACAAAGGAACTCTTACTGCTGGGGAGGTAGTTGCAATTAAAAGAGCACAGCATGGATCAATGCAGGGGGCTTTTGAGTTCAAAACAGAGATTGAGCTATTGTCAAGGATACATCACAAGAATGTTGTAAGCCTGGTTGGATTTTGTTATGAGCAAGGCGAACAAATGCTGGTTTATGAGTACATTCCAAAGGGTACTCTAAGGGAAAGTCTCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................TCAAGCCAAAATTCCAATTGGAGTGGACGAGGAGACTTAGGATAGCCCTTGATGCTGCTAGAGGTTTAGCATACTTGCATGAGCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708874" ref_strand="+" ref_description="SGN-E708874 [FA42AA09]">
      <seq>cgatttgcagcaccggcaagagatcgatcgccaccgcagcgtggtggtggagctaccactcgaagacggaaacggatactgcgcctcattcgatttggaaaaagcagtatgtagccacggcttattcatgatggccccaaaccgatgggacactctctccaaaaccctagaacgcccactacgcctctccgaaaacattaacgatgatgatcacgaacaatcggttctcgtccaaattactcaaccgtcggattatcctcattccctccttctacgtgttctcgatactgattccctttctactatacaccaacgctctctgctgggtcaagtgaggcgaatggtgagattatcagtggaagagaataaaagagtgaaattgtttcaggagatctgtggagaagcaaaggagagaggatttgggagagtgtttagatcgccgacattgtttgaggacatggtgaagtgtatgctgctctgcaattgccagtggtcaaggacgttgagcatggctgaagcattatgtgagcttcagttggagctgaactgtccctcgtcagctgcatcttttcctgatcctgataatcaaaatcagttgaagggcgtaacttccaagtcagagcatttcactccaagaacaccagcaggaaaagaattacggaaaagagctggagcttatggatgttccagaaacttgttggagaggcttaacgaagtcgaagaaattgtagatatagataaaccgggtgtaactgtgacacctgcattttcagttggtgaagaggttctccaaaaaagtaatctttgtcaggatactactgaggtttgggaaagttagtgtaagtgcaccactcaatcctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="145861" stop="147669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146156" g_stop="146480" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146481" i_stop="146580" i_length="100">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146581" g_stop="146744" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="489" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146745" i_stop="146995" i_length="251">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146996" g_stop="147369" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="864" r_length="375" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E708874" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146156" e_stop="146480"/>
          <exon e_start="146581" e_stop="146744"/>
          <exon e_start="146996" e_stop="147369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGCAGCACCGGCAAGAGATCGATCGCCACCGCAGCGTGGTGGTGGAGCTACCACTCGAAGACGGAAACGGATACTGCGCCTCATTCGATTTGGAAAAAGCAGTATGTAGCCACGGCTTATTCATGATGGCCCCAAACCGATGGGACACTCTCTCCAAAACCCTAGAACGCCCACTACGCCTCTCCGAAAACATTAACGATGATGATCACGAACAATCGGTTCTCGTCCAAATTACTCAACCGTCGGATTATCCTCATTCCCTCCTTCTACGTGTTCTCGATACTGATTCCCTTTCTACTATACACCAACGCTCTCTGCTGGTACTCCTTTTTCCGAAAGTATTGGTGTAAATTTTGTACCTTATGCAATTCCTTGTGTGGCTTTGTTTATTGGCTGGGTTTTACTTTTACTGTTATGTAGGGTCAAGTGAGGCGAATGGTGAGATTATCAGTGGAAGAGAATAAAAGAGTGAAATTGTTTCAGGAGATCTGTGGAGAAGCAAAGGAGAGAGGATTTGGGAGAGTGTTTAGATCGCCGACATTGTTTGAGGACATGGTGAAGTGTATGCTGCTCTGCAATTGCCAGTGAGTAGTTGAATTTAGTAGCTGTATTAACGGACAATATAGTATAAACCTATGCTAAGAATTTTTCTAGTCGACCCAGTGATGCTATGCAAGCTGAGTAGGGAAGTCAAGATTTTGAAGAAACCAAGAGAATGATCCAATTGTTTAATGAAAGGTGAAATTGTGGACATGTAGCCCGGGTAGCAGCTTGGTATGGTGTTTGGATAATATATATGTGCCTTTTTCTTATAATCTTTGCTTCCTCTGTGTAGGTGGTCAAGGACGTTGAGCATGGCTGAAGCATTATGTGAGCTTCAGTTGGAGCTGAACTGTCCCTCGTCAGCTGCATCTTTTCCTGATCCTGATAATCAAAATCAGTTGAAGGGCGTAACTTCCAAGTCAGAGCATTTCACTCCAAGAACACCAGCAGGAAAAGAATTACGGAAAAGAGCTGGAGCTTATGGATGTTCCAGAAACTTGTTGGAGAGGCTTAACGAAGTCGAAGAAATTGTAGATATAGATAAACCGGGTGTAACTGTGACACCTGCATTTTCAGTTGGTGAAGAGGTTCTCCAAAAAAGTAATCTTTGTCAGGATACTACTGAGGTTTGGG-AAGTTAGTGTAAGTGCACCACTCAATCCTGATC</genome_strand>
        <mrna_strand>CGATTTGCAGCACCGGCAAGAGATCGATCGCCACCGCAGCGTGGTGGTGGAGCTACCACTCGAAGACGGAAACGGATACTGCGCCTCATTCGATTTGGAAAAAGCAGTATGTAGCCACGGCTTATTCATGATGGCCCCAAACCGATGGGACACTCTCTCCAAAACCCTAGAACGCCCACTACGCCTCTCCGAAAACATTAACGATGATGATCACGAACAATCGGTTCTCGTCCAAATTACTCAACCGTCGGATTATCCTCATTCCCTCCTTCTACGTGTTCTCGATACTGATTCCCTTTCTACTATACACCAACGCTCTCTGCTG....................................................................................................GGTCAAGTGAGGCGAATGGTGAGATTATCAGTGGAAGAGAATAAAAGAGTGAAATTGTTTCAGGAGATCTGTGGAGAAGCAAAGGAGAGAGGATTTGGGAGAGTGTTTAGATCGCCGACATTGTTTGAGGACATGGTGAAGTGTATGCTGCTCTGCAATTGCCA...........................................................................................................................................................................................................................................................GTGGTCAAGGACGTTGAGCATGGCTGAAGCATTATGTGAGCTTCAGTTGGAGCTGAACTGTCCCTCGTCAGCTGCATCTTTTCCTGATCCTGATAATCAAAATCAGTTGAAGGGCGTAACTTCCAAGTCAGAGCATTTCACTCCAAGAACACCAGCAGGAAAAGAATTACGGAAAAGAGCTGGAGCTTATGGATGTTCCAGAAACTTGTTGGAGAGGCTTAACGAAGTCGAAGAAATTGTAGATATAGATAAACCGGGTGTAACTGTGACACCTGCATTTTCAGTTGGTGAAGAGGTTCTCCAAAAAAGTAATCTTTGTCAGGATACTACTGAGGTTTGGGAAAGTTAGTGTAAGTGCACCACTCAATCCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341880" ref_strand="+" ref_description="SGN-E341880 [cTOF-9-L20]">
      <seq>agagatcgatcgccaccgcagcgtggtggtggagctaccactcgaagacggaaacggatactgcgcctcattcgatttggaaaaagcagtatgtagccacggcttattcatgatggccccaaaccgatgggacactctctccaaaaccctagaacgcccactacgcctctccgaaaacattaacgatgatgatcacgaacaatcggttctcgtccaaattactcaaccgtcggattatcctcattccctccttctacgtgttctcgatactgattccctttctactatacaccaacgctctctgctgggtcaagtgaggcgaatggtgagattatcagtggaagagaataaaagagtgaaattgtttcaggagatctgtggagaagcaaaggagagaggatttgggagagtgtttagatcgccgacattgtttgaggacatggtgaagtgtatgctgctctgcaattgccagtggtcaaggacgttgagcatggctgaagcatttatgtgagcttcagttggagctgaactgtccctcgtcagctgcatcttttcctgatcctgataatcaaaaatcagttgaaggggcgtaacttccaagtcagagcatttcactccaagaacaccagcaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="145874" stop="147457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146174" g_stop="146480" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146481" i_stop="146580" i_length="100">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146581" g_stop="146744" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="471" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146745" i_stop="146995" i_length="251">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="146996" g_stop="147157" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="636" r_length="165" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E341880" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146174" e_stop="146480"/>
          <exon e_start="146581" e_stop="146744"/>
          <exon e_start="146996" e_stop="147157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATCGATCGCCACCGCAGCGTGGTGGTGGAGCTACCACTCGAAGACGGAAACGGATACTGCGCCTCATTCGATTTGGAAAAAGCAGTATGTAGCCACGGCTTATTCATGATGGCCCCAAACCGATGGGACACTCTCTCCAAAACCCTAGAACGCCCACTACGCCTCTCCGAAAACATTAACGATGATGATCACGAACAATCGGTTCTCGTCCAAATTACTCAACCGTCGGATTATCCTCATTCCCTCCTTCTACGTGTTCTCGATACTGATTCCCTTTCTACTATACACCAACGCTCTCTGCTGGTACTCCTTTTTCCGAAAGTATTGGTGTAAATTTTGTACCTTATGCAATTCCTTGTGTGGCTTTGTTTATTGGCTGGGTTTTACTTTTACTGTTATGTAGGGTCAAGTGAGGCGAATGGTGAGATTATCAGTGGAAGAGAATAAAAGAGTGAAATTGTTTCAGGAGATCTGTGGAGAAGCAAAGGAGAGAGGATTTGGGAGAGTGTTTAGATCGCCGACATTGTTTGAGGACATGGTGAAGTGTATGCTGCTCTGCAATTGCCAGTGAGTAGTTGAATTTAGTAGCTGTATTAACGGACAATATAGTATAAACCTATGCTAAGAATTTTTCTAGTCGACCCAGTGATGCTATGCAAGCTGAGTAGGGAAGTCAAGATTTTGAAGAAACCAAGAGAATGATCCAATTGTTTAATGAAAGGTGAAATTGTGGACATGTAGCCCGGGTAGCAGCTTGGTATGGTGTTTGGATAATATATATGTGCCTTTTTCTTATAATCTTTGCTTCCTCTGTGTAGGTGGTCAAGGACGTTGAGCATGGCTGAAGCA-TTATGTGAGCTTCAGTTGGAGCTGAACTGTCCCTCGTCAGCTGCATCTTTTCCTGATCCTGATAATC-AAAATCAGTTGAA-GGGCGTAACTTCCAAGTCAGAGCATTTCACTCCAAGAACACCAGCAGGAAA</genome_strand>
        <mrna_strand>AGAGATCGATCGCCACCGCAGCGTGGTGGTGGAGCTACCACTCGAAGACGGAAACGGATACTGCGCCTCATTCGATTTGGAAAAAGCAGTATGTAGCCACGGCTTATTCATGATGGCCCCAAACCGATGGGACACTCTCTCCAAAACCCTAGAACGCCCACTACGCCTCTCCGAAAACATTAACGATGATGATCACGAACAATCGGTTCTCGTCCAAATTACTCAACCGTCGGATTATCCTCATTCCCTCCTTCTACGTGTTCTCGATACTGATTCCCTTTCTACTATACACCAACGCTCTCTGCTG....................................................................................................GGTCAAGTGAGGCGAATGGTGAGATTATCAGTGGAAGAGAATAAAAGAGTGAAATTGTTTCAGGAGATCTGTGGAGAAGCAAAGGAGAGAGGATTTGGGAGAGTGTTTAGATCGCCGACATTGTTTGAGGACATGGTGAAGTGTATGCTGCTCTGCAATTGCCA...........................................................................................................................................................................................................................................................GTGGTCAAGGACGTTGAGCATGGCTGAAGCATTTATGTGAGCTTCAGTTGGAGCTGAACTGTCCCTCGTCAGCTGCATCTTTTCCTGATCCTGATAATCAAAAATCAGTTGAAGGGGCGTAACTTCCAAGTCAGAGCATTTCACTCCAAGAACACCAGCAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470595" ref_strand="+" ref_description="SGN-E470595 [cSTB-19-D14]">
      <seq>gacgttgagcatggctgaagcattatgtgagcttcagttggagtggaactgtccctcgtcagctgcatcttttcctgatcctgataatcaaaatcagttgaagggcgtaacttccaagtcagagcatttcactccacaaacaccagcaggaaaagaatcacggaaaagagctggagcttatggatgttccagaaacttgttggagaggcttaccaaagttgaagaaatcgtagatatagggaaaccgggtgtaactgtgacacctgcattttcagttggtgaagaggttctccaaaaaagtaatctttgtcgggatactactgaggtttgcgaagttggtacaagtgcaccattcaatcctgatccttcagaagatagaaagctgagctcttttaatcagcttgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0043D23-HpjBJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0043D23.2" temp_strand="+" temp_description="C01HBa0043D23.2  AC238508.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0043D23 upload_account_name:manual">
        <position start="146705" stop="147712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147005" g_stop="147412" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0043D23.2" gen_strand="+" ref_id="SGN-E470595" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0043D23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="147005" e_stop="147412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTTGAGCATGGCTGAAGCATTATGTGAGCTTCAGTTGGAGCTGAACTGTCCCTCGTCAGCTGCATCTTTTCCTGATCCTGATAATCAAAATCAGTTGAAGGGCGTAACTTCCAAGTCAGAGCATTTCACTCCAAGAACACCAGCAGGAAAAGAATTACGGAAAAGAGCTGGAGCTTATGGATGTTCCAGAAACTTGTTGGAGAGGCTTAACGAAGTCGAAGAAATTGTAGATATAGATAAACCGGGTGTAACTGTGACACCTGCATTTTCAGTTGGTGAAGAGGTTCTCCAAAAAAGTAATCTTTGTCAGGATACTACTGAGGTTTGGGAAGTTAGTGTAAGTGCACCACTCAATCCTGATCCTTCAGAAGATAGAAAGCTGAGCTCTTTTAATCAGCTTGGGAA</genome_strand>
        <mrna_strand>GACGTTGAGCATGGCTGAAGCATTATGTGAGCTTCAGTTGGAGTGGAACTGTCCCTCGTCAGCTGCATCTTTTCCTGATCCTGATAATCAAAATCAGTTGAAGGGCGTAACTTCCAAGTCAGAGCATTTCACTCCACAAACACCAGCAGGAAAAGAATCACGGAAAAGAGCTGGAGCTTATGGATGTTCCAGAAACTTGTTGGAGAGGCTTACCAAAGTTGAAGAAATCGTAGATATAGGGAAACCGGGTGTAACTGTGACACCTGCATTTTCAGTTGGTGAAGAGGTTCTCCAAAAAAGTAATCTTTGTCGGGATACTACTGAGGTTTGCGAAGTTGGTACAAGTGCACCATTCAATCCTGATCCTTCAGAAGATAGAAAGCTGAGCTCTTTTAATCAGCTTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>153</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2445" PGL_stop="3164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2445" e_stop="3164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="2445" e_stop="3164" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2445" stop="3164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2445" stop="3132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGGATCACATGATGATAATCTTATTGCAATTTGCGGGATGAGCGGAATCGGGAAGACAACTGTTGCCAAATATGTTTTCACTACAAACTTTAGAAGATTTGAAGGTAGTAGTTTTCTTGCAAATATCCAAGATATTTCTCAGCAAAATGATGGCTTAATTCGCTTACAAAAGCAGCTCCTTTATGATTTAACTGGGAAAAAGAGTAAAATACAAGATACTGATGAAGGGATCATCAAGATAAGAGATGCTATATGTTTTAAAAGAGTTCTAGTCATATTGGATGACATTGATCAAATAGAACAAATTCATGCTATAATTGGAATGAAAAATTGGTTCTGTCCAGGAAGTAAAATAATCATAACAACTAAGAATTCATGTTTGCTGAAGGTTGAAGAAATTCAAAAAGTCCATAAAGTCAGGGAAATGGGTAATGATGAATCACTGGAGCTTTTCAGTTGGCATTCCTTTGGGGAGGACCACCCAGCTGATGACTACATGGAACTATCAAAAAGGGTGGTAAAGCATTGTGGAGGGCTTCCTCTGGCACTTCAAGTTTTGGGTTCTTCTCTTTGTGGGAGAAGTATCGATGTATGGAAGAGTGCATTAGACAAGTTGGAAGCGATTCCTGCAAGTCAGGTCATTAAAAAACTAAAATTTGGGTATGACTCATTAAAAGATGATCATGATAAGAATTTGTTCCTTGACATTGCCTGCTTC</gDNA_template>
            <first_frame> D  G  S  H  D  D  N  L  I  A  I  C  G  M  S  G  I  G  K  T  T  V  A  K  Y  V  F  T  T  N  F  R  R  F  E  G  S  S  F  L  A  N  I  Q  D  I  S  Q  Q  N  D  G  L  I  R  L  Q  K  Q  L  L  Y  D  L  T  G  K  K  S  K  I  Q  D  T  D  E  G  I  I  K  I  R  D  A  I  C  F  K  R  V  L  V  I  L  D  D  I  D  Q  I  E  Q  I  H  A  I  I  G  M  K  N  W  F  C  P  G  S  K  I  I  I  T  T  K  N  S  C  L  L  K  V  E  E  I  Q  K  V  H  K  V  R  E  M  G  N  D  E  S  L  E  L  F  S  W  H  S  F  G  E  D  H  P  A  D  D  Y  M  E  L  S  K  R  V  V  K  H  C  G  G  L  P  L  A  L  Q  V  L  G  S  S  L  C  G  R  S  I  D  V  W  K  S  A  L  D  K  L  E  A  I  P  A  S  Q  V  I  K  K  L  K  F  G  Y  D  S  L  K  D  D  H  D  K  N  L  F  L  D  I  A  C  F </first_frame>
            <second_frame>  M  D  H  M  M  I  I  L  L  Q  F  A  G  *  A  E  S  G  R  Q  L  L  P  N  M  F  S  L  Q  T  L  E  D  L  K  V  V  V  F  L  Q  I  S  K  I  F  L  S  K  M  M  A  *  F  A  Y  K  S  S  S  F  M  I  *  L  G  K  R  V  K  Y  K  I  L  M  K  G  S  S  R  *  E  M  L  Y  V  L  K  E  F  *  S  Y  W  M  T  L  I  K  *  N  K  F  M  L  *  L  E  *  K  I  G  S  V  Q  E  V  K  *  S  *  Q  L  R  I  H  V  C  *  R  L  K  K  F  K  K  S  I  K  S  G  K  W  V  M  M  N  H  W  S  F  S  V  G  I  P  L  G  R  T  T  Q  L  M  T  T  W  N  Y  Q  K  G  W  *  S  I  V  E  G  F  L  W  H  F  K  F  W  V  L  L  F  V  G  E  V  S  M  Y  G  R  V  H  *  T  S  W  K  R  F  L  Q  V  R  S  L  K  N  *  N  L  G  M  T  H  *  K  M  I  M  I  R  I  C  S  L  T  L  P  A   </second_frame>
            <third_frame>   W  I  T  *  *  *  S  Y  C  N  L  R  D  E  R  N  R  E  D  N  C  C  Q  I  C  F  H  Y  K  L  *  K  I  *  R  *  *  F  S  C  K  Y  P  R  Y  F  S  A  K  *  W  L  N  S  L  T  K  A  A  P  L  *  F  N  W  E  K  E  *  N  T  R  Y  *  *  R  D  H  Q  D  K  R  C  Y  M  F  *  K  S  S  S  H  I  G  *  H  *  S  N  R  T  N  S  C  Y  N  W  N  E  K  L  V  L  S  R  K  *  N  N  H  N  N  *  E  F  M  F  A  E  G  *  R  N  S  K  S  P  *  S  Q  G  N  G  *  *  *  I  T  G  A  F  Q  L  A  F  L  W  G  G  P  P  S  *  *  L  H  G  T  I  K  K  G  G  K  A  L  W  R  A  S  S  G  T  S  S  F  G  F  F  S  L  W  E  K  Y  R  C  M  E  E  C  I  R  Q  V  G  S  D  S  C  K  S  G  H  *  K  T  K  I  W  V  *  L  I  K  R  *  S  *  *  E  F  V  P  *  H  C  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2445" stop="3164"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGSHDDNLIAICGMSGIGKTTVAKYVFTTNFRRFEGSSFLANIQDISQQNDGLIRLQKQLLYDLTGKKSKIQDTDEGIIKIRDAICFKRVLVILDDIDQIEQIHAIIGMKNWFCPGSKIIITTKNSCLLKVEEIQKVHKVREMGNDESLELFSWHSFGEDHPADDYMELSKRVVKHCGGLPLALQVLGSSLCGRSIDVWKSALDKLEAIPASQVIKKLKFGYDSLKDDHDKNLFLDIACF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4262" PGL_stop="5618"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4262" e_stop="4891"/>
            <exon e_start="5033" e_stop="5618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.903"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="4262" e_stop="4891" e_length="630"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4892" i_stop="5032" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="5033" e_stop="5618" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4262" stop="4806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4264" stop="4891"/>
              <exon start="5033" stop="5060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4375" stop="4891"/>
              <exon start="5033" stop="5295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4376" stop="4863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4658" stop="4891"/>
              <exon start="5033" stop="5618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTTGTGGAGGATGCAATCCTTGGAAGTGTTTCTTGCAAATGAAATTCCAATGTGTCAATTACCCTCTAAGAGAAAACAGAACTCAATATGGCATGCACTTATCCAGTCTTGGCTTCCGAAGCCGAGAAAAGTTCTAGATCTTCCATGGGTTTCTTTACCAAAATCTTTGGTTAATTTAAGTCTATCTGGGTGCAATCTATCTGACGTTGCTTTTCCAAGGGATTTCAGTAATTTAATGTTGTTGCAGAACCTAGACCTCAGTAAAAATCCAATCAGTTGTCTTCCAGATTGCGTCAGAACTCTGTCCAGGCTCAACAGTCTTGAATTAGGTTCTTGTACAATGCTTAAATTACTCATAGACCTACCTCGCATCCACAATTTGAGGTTGGGACACTGCACTTCCCTAGAAAGAGTAACATATCTATCAGAAGTGTGCCGTGCAGTAGTTTACCATTTAAATGGCTGTAAAGCACTCACTGATATGGAGGGAAACTTCAAGTTGGAAGCCATGGGAGGAATTGAGATAGAAAAGAAGTCATTGGAATTAAGCATGTGGGATTCTGTCGGAAGCTCCGAAGTGAAATTGTATAACAATTCAACTAATACAGAAAGTAGAGGACCAGTAAAG : GTGTTGTTTGAAAGGGGGATGATCAGCATATATCTTCCGGGGAGCAAGGTTCCTAATTGGTTTTGTTACAAGAGTGCTGGAGCAACTCTATCTTTCGCTGTCCCTTCACCTCCTGATCTCAAGATCCAGGGCATAACTGTGTGCTCAGTGTACACAATTGACTGGAAAGTCTGGATTGCGGGTATCGAATTTTATTTGATAATCCATAATGAGCAGAAGAATGTGAAGCTGATTTATAGCCCGACTTGCTATGGTCTTCCTGAAGCCCAAAACGAAATGTTATGGTTCACCCATTTGATATTTCTGAGTCAGCTGGATGCTGGTGACACCTTGAATGTCTCAGTTGTTACTATGGAGGGTTTTAGCATCAAGGAAATGGGTATTCACTTGATGCATGATGAGCAAGTAGACATGATTTTGAACTCAAACAGTCATGAAATGCAGAAAGATTATCCTTATCAGGGGATGACGCCTGCCAAACGTCAAGGGCTTGTAGATTTATACTGTTTTGGCCATATCGGGCCTGGATTGGACTACATTTTGCCATATATACCTTGAGATCCATGAATGGGAATTCTTTGAAGAA</gDNA_template>
            <first_frame> D  L  W  R  M  Q  S  L  E  V  F  L  A  N  E  I  P  M  C  Q  L  P  S  K  R  K  Q  N  S  I  W  H  A  L  I  Q  S  W  L  P  K  P  R  K  V  L  D  L  P  W  V  S  L  P  K  S  L  V  N  L  S  L  S  G  C  N  L  S  D  V  A  F  P  R  D  F  S  N  L  M  L  L  Q  N  L  D  L  S  K  N  P  I  S  C  L  P  D  C  V  R  T  L  S  R  L  N  S  L  E  L  G  S  C  T  M  L  K  L  L  I  D  L  P  R  I  H  N  L  R  L  G  H  C  T  S  L  E  R  V  T  Y  L  S  E  V  C  R  A  V  V  Y  H  L  N  G  C  K  A  L  T  D  M  E  G  N  F  K  L  E  A  M  G  G  I  E  I  E  K  K  S  L  E  L  S  M  W  D  S  V  G  S  S  E  V  K  L  Y  N  N  S  T  N  T  E  S  R  G  P  V  K  :  V  L  F  E  R  G  M  I  S  I  Y  L  P  G  S  K  V  P  N  W  F  C  Y  K  S  A  G  A  T  L  S  F  A  V  P  S  P  P  D  L  K  I  Q  G  I  T  V  C  S  V  Y  T  I  D  W  K  V  W  I  A  G  I  E  F  Y  L  I  I  H  N  E  Q  K  N  V  K  L  I  Y  S  P  T  C  Y  G  L  P  E  A  Q  N  E  M  L  W  F  T  H  L  I  F  L  S  Q  L  D  A  G  D  T  L  N  V  S  V  V  T  M  E  G  F  S  I  K  E  M  G  I  H  L  M  H  D  E  Q  V  D  M  I  L  N  S  N  S  H  E  M  Q  K  D  Y  P  Y  Q  G  M  T  P  A  K  R  Q  G  L  V  D  L  Y  C  F  G  H  I  G  P  G  L  D  Y  I  L  P  Y  I  P  *  D  P  *  M  G  I  L  *  R  </first_frame>
            <second_frame>  T  C  G  G  C  N  P  W  K  C  F  L  Q  M  K  F  Q  C  V  N  Y  P  L  R  E  N  R  T  Q  Y  G  M  H  L  S  S  L  G  F  R  S  R  E  K  F  *  I  F  H  G  F  L  Y  Q  N  L  W  L  I  *  V  Y  L  G  A  I  Y  L  T  L  L  F  Q  G  I  S  V  I  *  C  C  C  R  T  *  T  S  V  K  I  Q  S  V  V  F  Q  I  A  S  E  L  C  P  G  S  T  V  L  N  *  V  L  V  Q  C  L  N  Y  S  *  T  Y  L  A  S  T  I  *  G  W  D  T  A  L  P  *  K  E  *  H  I  Y  Q  K  C  A  V  Q  *  F  T  I  *  M  A  V  K  H  S  L  I  W  R  E  T  S  S  W  K  P  W  E  E  L  R  *  K  R  S  H  W  N  *  A  C  G  I  L  S  E  A  P  K  *  N  C  I  T  I  Q  L  I  Q  K  V  E  D  Q  *  R :   C  C  L  K  G  G  *  S  A  Y  I  F  R  G  A  R  F  L  I  G  F  V  T  R  V  L  E  Q  L  Y  L  S  L  S  L  H  L  L  I  S  R  S  R  A  *  L  C  A  Q  C  T  Q  L  T  G  K  S  G  L  R  V  S  N  F  I  *  *  S  I  M  S  R  R  M  *  S  *  F  I  A  R  L  A  M  V  F  L  K  P  K  T  K  C  Y  G  S  P  I  *  Y  F  *  V  S  W  M  L  V  T  P  *  M  S  Q  L  L  L  W  R  V  L  A  S  R  K  W  V  F  T  *  C  M  M  S  K  *  T  *  F  *  T  Q  T  V  M  K  C  R  K  I  I  L  I  R  G  *  R  L  P  N  V  K  G  L  *  I  Y  T  V  L  A  I  S  G  L  D  W  T  T  F  C  H  I  Y  L  E  I  H  E  W  E  F  F  E  E </second_frame>
            <third_frame>   L  V  E  D  A  I  L  G  S  V  S  C  K  *  N  S  N  V  S  I  T  L  *  E  K  T  E  L  N  M  A  C  T  Y  P  V  L  A  S  E  A  E  K  S  S  R  S  S  M  G  F  F  T  K  I  F  G  *  F  K  S  I  W  V  Q  S  I  *  R  C  F  S  K  G  F  Q  *  F  N  V  V  A  E  P  R  P  Q  *  K  S  N  Q  L  S  S  R  L  R  Q  N  S  V  Q  A  Q  Q  S  *  I  R  F  L  Y  N  A  *  I  T  H  R  P  T  S  H  P  Q  F  E  V  G  T  L  H  F  P  R  K  S  N  I  S  I  R  S  V  P  C  S  S  L  P  F  K  W  L  *  S  T  H  *  Y  G  G  K  L  Q  V  G  S  H  G  R  N  *  D  R  K  E  V  I  G  I  K  H  V  G  F  C  R  K  L  R  S  E  I  V  *  Q  F  N  *  Y  R  K  *  R  T  S  K   : G  V  V  *  K  G  D  D  Q  H  I  S  S  G  E  Q  G  S  *  L  V  L  L  Q  E  C  W  S  N  S  I  F  R  C  P  F  T  S  *  S  Q  D  P  G  H  N  C  V  L  S  V  H  N  *  L  E  S  L  D  C  G  Y  R  I  L  F  D  N  P  *  *  A  E  E  C  E  A  D  L  *  P  D  L  L  W  S  S  *  S  P  K  R  N  V  M  V  H  P  F  D  I  S  E  S  A  G  C  W  *  H  L  E  C  L  S  C  Y  Y  G  G  F  *  H  Q  G  N  G  Y  S  L  D  A  *  *  A  S  R  H  D  F  E  L  K  Q  S  *  N  A  E  R  L  S  L  S  G  D  D  A  C  Q  T  S  R  A  C  R  F  I  L  F  W  P  Y  R  A  W  I  G  L  H  F  A  I  Y  T  L  R  S  M  N  G  N  S  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4262" stop="4891"/>
                    <exon start="5033" stop="5590"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1185</number_coding_nucleotides>
                  <number_encoded_amino_acids>395</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLWRMQSLEVFLANEIPMCQLPSKRKQNSIWHALIQSWLPKPRKVLDLPWVSLPKSLVNLSLSGCNLSDVAFPRDFSNLMLLQNLDLSKNPISCLPDCVRTLSRLNSLELGSCTMLKLLIDLPRIHNLRLGHCTSLERVTYLSEVCRAVVYHLNGCKALTDMEGNFKLEAMGGIEIEKKSLELSMWDSVGSSEVKLYNNSTNTESRGPVKVLFERGMISIYLPGSKVPNWFCYKSAGATLSFAVPSPPDLKIQGITVCSVYTIDWKVWIAGIEFYLIIHNEQKNVKLIYSPTCYGLPEAQNEMLWFTHLIFLSQLDAGDTLNVSVVTMEGFSIKEMGIHLMHDEQVDMILNSNSHEMQKDYPYQGMTPAKRQGLVDLYCFGHIGPGLDYILPYIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16329" PGL_stop="15474"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16329" e_stop="15474"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="16329" e_stop="15474" e_length="856"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16329" stop="15474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16245" stop="15851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGCCTCTCTCCCCTTGAGAGATGAATCTTGCTCCAATCTCATTCAATGTCTCATCTTCTACAGTTCCAAGTTTCCATATAGCTTCTTCACATTCACAGTCCTTGTCGTTGAGGAGGAGTATTACTCCTTTAGCAATTGTATCCAGAAAAGTTATTCCAGCGCGAGACCGAGTCATAGATTTTGGAAAATACAAAGGTAAAATGCTGGGAACACTCCCATCTAAGTACCTCAAATGGGTGACAAAGAATCTCCGAGCTCGAGATTTTGAAGAATGGGCTCAGCTAGCAGATCAAGTCCTCTCTGACCCTATCTATAGGGACCGAATTGAATGGGAGTTTGCCCAAAATCTCCTCAACGGCGACGTTTCACCGGCACGGACGCAGAGTTCCGTTTCGGAGTTGCTGGAAATCAGCACCAGATTCCGTTGGGACAATGAGGATAAGTTGGGTTGGAGCAAAATTGATTTTGAGTTACTTGGGACCTCTAAAGGTGGTCGAATACCAAGGCTTTCTGATTCCCCCAATAATTCAATTAGGGTTGAAGATAAAAAAAGGGTACAGATGGAGTTGATAGTAGTCAGGATGATGGCGAAAAAGACAATAGGGAGAGAAGACGGGAAAGGATAAAGTTACAGAGGAGACCGAATGAATCTGGCCAACGTTCAACTAGTGTTACACAGAGAAGAGCGAATTCTGATCATTTCAATCCACTCAAATCAGACCCAATTGGCGCCACTAATAATAACACTAGTAGCGGCAGAACGGAAACTCCGAGTCGTTTTCCGGGTCGTGAATCCCTGTTGAAGAAAGCATTGTCCAGAAAAAATACCTCAAATTAATGAATTTCTGATACCT</gDNA_template>
            <first_frame> A  A  S  L  P  L  R  D  E  S  C  S  N  L  I  Q  C  L  I  F  Y  S  S  K  F  P  Y  S  F  F  T  F  T  V  L  V  V  E  E  E  Y  Y  S  F  S  N  C  I  Q  K  S  Y  S  S  A  R  P  S  H  R  F  W  K  I  Q  R  *  N  A  G  N  T  P  I  *  V  P  Q  M  G  D  K  E  S  P  S  S  R  F  *  R  M  G  S  A  S  R  S  S  P  L  *  P  Y  L  *  G  P  N  *  M  G  V  C  P  K  S  P  Q  R  R  R  F  T  G  T  D  A  E  F  R  F  G  V  A  G  N  Q  H  Q  I  P  L  G  Q  *  G  *  V  G  L  E  Q  N  *  F  *  V  T  W  D  L  *  R  W  S  N  T  K  A  F  *  F  P  Q  *  F  N  *  G  *  R  *  K  K  G  T  D  G  V  D  S  S  Q  D  D  G  E  K  D  N  R  E  R  R  R  E  R  I  K  L  Q  R  R  P  N  E  S  G  Q  R  S  T  S  V  T  Q  R  R  A  N  S  D  H  F  N  P  L  K  S  D  P  I  G  A  T  N  N  N  T  S  S  G  R  T  E  T  P  S  R  F  P  G  R  E  S  L  L  K  K  A  L  S  R  K  N  T  S  N  *  *  I  S  D  T  </first_frame>
            <second_frame>  Q  P  L  S  P  *  E  M  N  L  A  P  I  S  F  N  V  S  S  S  T  V  P  S  F  H  I  A  S  S  H  S  Q  S  L  S  L  R  R  S  I  T  P  L  A  I  V  S  R  K  V  I  P  A  R  D  R  V  I  D  F  G  K  Y  K  G  K  M  L  G  T  L  P  S  K  Y  L  K  W  V  T  K  N  L  R  A  R  D  F  E  E  W  A  Q  L  A  D  Q  V  L  S  D  P  I  Y  R  D  R  I  E  W  E  F  A  Q  N  L  L  N  G  D  V  S  P  A  R  T  Q  S  S  V  S  E  L  L  E  I  S  T  R  F  R  W  D  N  E  D  K  L  G  W  S  K  I  D  F  E  L  L  G  T  S  K  G  G  R  I  P  R  L  S  D  S  P  N  N  S  I  R  V  E  D  K  K  R  V  Q  M  E  L  I  V  V  R  M  M  A  K  K  T  I  G  R  E  D  G  K  G  *  S  Y  R  G  D  R  M  N  L  A  N  V  Q  L  V  L  H  R  E  E  R  I  L  I  I  S  I  H  S  N  Q  T  Q  L  A  P  L  I  I  T  L  V  A  A  E  R  K  L  R  V  V  F  R  V  V  N  P  C  *  R  K  H  C  P  E  K  I  P  Q  I  N  E  F  L  I  P </second_frame>
            <third_frame>   S  L  S  P  L  E  R  *  I  L  L  Q  S  H  S  M  S  H  L  L  Q  F  Q  V  S  I  *  L  L  H  I  H  S  P  C  R  *  G  G  V  L  L  L  *  Q  L  Y  P  E  K  L  F  Q  R  E  T  E  S  *  I  L  E  N  T  K  V  K  C  W  E  H  S  H  L  S  T  S  N  G  *  Q  R  I  S  E  L  E  I  L  K  N  G  L  S  *  Q  I  K  S  S  L  T  L  S  I  G  T  E  L  N  G  S  L  P  K  I  S  S  T  A  T  F  H  R  H  G  R  R  V  P  F  R  S  C  W  K  S  A  P  D  S  V  G  T  M  R  I  S  W  V  G  A  K  L  I  L  S  Y  L  G  P  L  K  V  V  E  Y  Q  G  F  L  I  P  P  I  I  Q  L  G  L  K  I  K  K  G  Y  R  W  S  *  *  *  S  G  *  W  R  K  R  Q  *  G  E  K  T  G  K  D  K  V  T  E  E  T  E  *  I  W  P  T  F  N  *  C  Y  T  E  K  S  E  F  *  S  F  Q  S  T  Q  I  R  P  N  W  R  H  *  *  *  H  *  *  R  Q  N  G  N  S  E  S  F  S  G  S  *  I  P  V  E  E  S  I  V  Q  K  K  Y  L  K  L  M  N  F  *  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16310" stop="15702"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMNLAPISFNVSSSTVPSFHIASSHSQSLSLRRSITPLAIVSRKVIPARDRVIDFGKYKGKMLGTLPSKYLKWVTKNLRARDFEEWAQLADQVLSDPIYRDRIEWEFAQNLLNGDVSPARTQSSVSELLEISTRFRWDNEDKLGWSKIDFELLGTSKGGRIPRLSDSPNNSIRVEDKKRVQMELIVVRMMAKKTIGREDGKG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23836" PGL_stop="22990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23836" e_stop="23697"/>
            <exon e_start="23607" e_stop="22990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.931" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23836" e_stop="23697" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.931" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23696" i_stop="23608" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23607" e_stop="22990" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23836" stop="23697"/>
              <exon start="23607" stop="23519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23794" stop="23697"/>
              <exon start="23607" stop="22990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23775" stop="23697"/>
              <exon start="23607" stop="22994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATAAGGTGATGATGCCTCCACTTATTCAGGACATGGGGAAAGAAATTATTCGTCGAGAATCACAAGATGATCCCGAGAGATTGTTGTGCAAATGGTTGAACCAATGCGGTCTGTCACATGACTTGACAGAAAACAGT : GGAACTGATGCAGATGGAGTAGACCTCCAAGGCACGCATCTGCCAGAAGATGGTCTTGTCCCAGCACTTGGTCCTAATGCTGCAAAAAGACCATATTATCAAGATTTTCCAGAAATAGCTGTTCTGCCATACCTAGGTAATTCGTTGAAAAGGCGTTTTGTTGGACTTCTTTCGACATTCCCCTTATCTGGTGGCCTCAAAAGATTCTTCCCATGATGAGAAAAGTACTTGTGAAGACGCCTTCTTTCTTTCGGAAAAACCAACATTTTACTACTTAATCTTGTGGAGCTAGAAGATATACATGAGTGTTGTGTGAGGCGGCGGGGCTTCAATAAGGATCATTATCTGATAATATCTGAGCATTTCTTTTGCTTGACATACTGTCTTAGTTGCACAAATTTGTTAGTTGCAGATGTATATTCTGTCCTGTTCTTTTTCATCAGCTTCAGGTGGGCAATGGTGTAAATTATGTTTTATTAACTCATTGTACAGTCATAGGATCATTTCTTGCTAGCTGCATAGTTTACTTCAGCAAACAGTTCACTGGAAGGAACTAAAAATGTAATCTTTAACCATTCCTTTTTAGTCTCTCAAAAAATATCTGAAGTTTTACCATTC</gDNA_template>
            <first_frame> K  I  R  *  *  C  L  H  L  F  R  T  W  G  K  K  L  F  V  E  N  H  K  M  I  P  R  D  C  C  A  N  G  *  T  N  A  V  C  H  M  T  *  Q  K  T  V :   E  L  M  Q  M  E  *  T  S  K  A  R  I  C  Q  K  M  V  L  S  Q  H  L  V  L  M  L  Q  K  D  H  I  I  K  I  F  Q  K  *  L  F  C  H  T  *  V  I  R  *  K  G  V  L  L  D  F  F  R  H  S  P  Y  L  V  A  S  K  D  S  S  H  D  E  K  S  T  C  E  D  A  F  F  L  S  E  K  P  T  F  Y  Y  L  I  L  W  S  *  K  I  Y  M  S  V  V  *  G  G  G  A  S  I  R  I  I  I  *  *  Y  L  S  I  S  F  A  *  H  T  V  L  V  A  Q  I  C  *  L  Q  M  Y  I  L  S  C  S  F  S  S  A  S  G  G  Q  W  C  K  L  C  F  I  N  S  L  Y  S  H  R  I  I  S  C  *  L  H  S  L  L  Q  Q  T  V  H  W  K  E  L  K  M  *  S  L  T  I  P  F  *  S  L  K  K  Y  L  K  F  Y  H   </first_frame>
            <second_frame>  K  *  G  D  D  A  S  T  Y  S  G  H  G  E  R  N  Y  S  S  R  I  T  R  *  S  R  E  I  V  V  Q  M  V  E  P  M  R  S  V  T  *  L  D  R  K  Q   : W  N  *  C  R  W  S  R  P  P  R  H  A  S  A  R  R  W  S  C  P  S  T  W  S  *  C  C  K  K  T  I  L  S  R  F  S  R  N  S  C  S  A  I  P  R  *  F  V  E  K  A  F  C  W  T  S  F  D  I  P  L  I  W  W  P  Q  K  I  L  P  M  M  R  K  V  L  V  K  T  P  S  F  F  R  K  N  Q  H  F  T  T  *  S  C  G  A  R  R  Y  T  *  V  L  C  E  A  A  G  L  Q  *  G  S  L  S  D  N  I  *  A  F  L  L  L  D  I  L  S  *  L  H  K  F  V  S  C  R  C  I  F  C  P  V  L  F  H  Q  L  Q  V  G  N  G  V  N  Y  V  L  L  T  H  C  T  V  I  G  S  F  L  A  S  C  I  V  Y  F  S  K  Q  F  T  G  R  N  *  K  C  N  L  *  P  F  L  F  S  L  S  K  N  I  *  S  F  T  I  </second_frame>
            <third_frame>   N  K  V  M  M  P  P  L  I  Q  D  M  G  K  E  I  I  R  R  E  S  Q  D  D  P  E  R  L  L  C  K  W  L  N  Q  C  G  L  S  H  D  L  T  E  N  S  :  G  T  D  A  D  G  V  D  L  Q  G  T  H  L  P  E  D  G  L  V  P  A  L  G  P  N  A  A  K  R  P  Y  Y  Q  D  F  P  E  I  A  V  L  P  Y  L  G  N  S  L  K  R  R  F  V  G  L  L  S  T  F  P  L  S  G  G  L  K  R  F  F  P  *  *  E  K  Y  L  *  R  R  L  L  S  F  G  K  T  N  I  L  L  L  N  L  V  E  L  E  D  I  H  E  C  C  V  R  R  R  G  F  N  K  D  H  Y  L  I  I  S  E  H  F  F  C  L  T  Y  C  L  S  C  T  N  L  L  V  A  D  V  Y  S  V  L  F  F  F  I  S  F  R  W  A  M  V  *  I  M  F  Y  *  L  I  V  Q  S  *  D  H  F  L  L  A  A  *  F  T  S  A  N  S  S  L  E  G  T  K  N  V  I  F  N  H  S  F  L  V  S  Q  K  I  S  E  V  L  P  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23834" stop="23697"/>
                    <exon start="23607" stop="23392"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKVMMPPLIQDMGKEIIRRESQDDPERLLCKWLNQCGLSHDLTENSGTDADGVDLQGTHLPEDGLVPALGPNAAKRPYYQDFPEIAVLPYLGNSLKRRFVGLLSTFPLSGGLKRFFP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23373" stop="23143"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLLSFGKTNILLLNLVELEDIHECCVRRRGFNKDHYLIISEHFFCLTYCLSCTNLLVADVYSVLFFFISFRWAMV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="27993" PGL_stop="24211"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27993" e_stop="27438"/>
            <exon e_start="24801" e_stop="24249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.917" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27993" e_stop="27438" e_length="556"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.917">
            <gDNA_intron_boundary i_start="27437" i_stop="24802" i_length="2636"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24801" e_stop="24249" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27993" stop="27750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27874" stop="27438"/>
              <exon start="24801" stop="24771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27564" stop="27438"/>
              <exon start="24801" stop="24249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27564" stop="27438"/>
              <exon start="24801" stop="24343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27536" stop="27438"/>
              <exon start="24801" stop="24255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209975" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGTCTTTGCATCAACTCTCAGTTGTGTCATCGTTTTCTTGGACTTTTTTCAATGGCAACCCCACAAAACCGTTATTCTTTCCATGTTTTCTTGAGTTTTAGAGGCGAAGACACCCGGAAAAACTTTACTGATCATCTCTACACAGCTCTCATCAACGCTGGAATTCGAACTTTTCGAGATGATGACGAAATCCGCAGGGGAGAAAACATAGAATCTGAACTGCAAAAGGGTATTCGAGAATCCAAGATTTCACTAATTGTCTTCTCTAAAGACTACGCTTCTTCAAGATGGTGTCTTGATGAGCTTGTCAACATTCTTGATCGAAGAAAGAAAGAGGGTCATACTGTCTTGCCTGTTTTTTACACTGTCAGCCCTGAGGATGTTCAGAACCAAAGTGGAAGTTTTGCTGAAGCTTTTGTGAATCATGAAAAGAGAGGAAATGCAGAGAGTGGAGAGAAAAGAAAGGAATGGATGGAGAAGATGGAGAAATGGAGATTAGCTCTGAAGGAAGTTGCTGAATTGGAAGGAATGTGCTTAGCCAAAGAAGTAGACGG : GCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCAGCTGGATGTCTTAGATTCACTTATTGGAACAAGGGATTGGTTTTATCCGGGGAGTAAAATTCTCATTACGACAAGGTGTGAGAAACTATTGAAGTCCTATGAGAGGCACATGCTATTCAAG</gDNA_template>
            <first_frame> F  V  F  A  S  T  L  S  C  V  I  V  F  L  D  F  F  Q  W  Q  P  H  K  T  V  I  L  S  M  F  S  *  V  L  E  A  K  T  P  G  K  T  L  L  I  I  S  T  Q  L  S  S  T  L  E  F  E  L  F  E  M  M  T  K  S  A  G  E  K  T  *  N  L  N  C  K  R  V  F  E  N  P  R  F  H  *  L  S  S  L  K  T  T  L  L  Q  D  G  V  L  M  S  L  S  T  F  L  I  E  E  R  K  R  V  I  L  S  C  L  F  F  T  L  S  A  L  R  M  F  R  T  K  V  E  V  L  L  K  L  L  *  I  M  K  R  E  E  M  Q  R  V  E  R  K  E  R  N  G  W  R  R  W  R  N  G  D  *  L  *  R  K  L  L  N  W  K  E  C  A  *  P  K  K  *  T   : G  M  R  Q  N  S  S  K  R  S  L  R  R  Y  S  K  D  *  I  A  Q  Y  L  V  Y  L  H  T  Q  L  D  *  R  L  E  *  R  T  L  T  H  G  Y  R  M  N  P  V  K  L  A  L  G  *  S  V  D  L  V  A  L  E  R  L  L  L  L  K  *  L  T  T  L  I  M  I  D  L  M  G  V  A  F  L  Q  M  S  E  K  S  L  R  N  I  Q  M  V  R  F  I  C  K  N  K  F  S  K  V  F  *  K  A  E  R  K  K  Y  T  M  L  M  K  E  L  S  K  *  K  M  L  L  A  T  K  R  F  L  L  Y  L  M  M  W  I  S  W  M  S  *  I  H  L  L  E  Q  G  I  G  F  I  R  G  V  K  F  S  L  R  Q  G  V  R  N  Y  *  S  P  M  R  G  T  C  Y  S   </first_frame>
            <second_frame>  L  S  L  H  Q  L  S  V  V  S  S  F  S  W  T  F  F  N  G  N  P  T  K  P  L  F  F  P  C  F  L  E  F  *  R  R  R  H  P  E  K  L  Y  *  S  S  L  H  S  S  H  Q  R  W  N  S  N  F  S  R  *  *  R  N  P  Q  G  R  K  H  R  I  *  T  A  K  G  Y  S  R  I  Q  D  F  T  N  C  L  L  *  R  L  R  F  F  K  M  V  S  *  *  A  C  Q  H  S  *  S  K  K  E  R  G  S  Y  C  L  A  C  F  L  H  C  Q  P  *  G  C  S  E  P  K  W  K  F  C  *  S  F  C  E  S  *  K  E  R  K  C  R  E  W  R  E  K  K  G  M  D  G  E  D  G  E  M  E  I  S  S  E  G  S  C  *  I  G  R  N  V  L  S  Q  R  S  R  R  :  A  *  G  K  I  H  P  K  D  H  *  G  D  T  Q  K  I  E  S  H  S  T  *  C  T  F  I  H  S  W  T  R  G  S  S  E  G  H  *  L  M  V  T  G  *  I  Q  *  S  W  H  W  D  D  L  W  T  W  W  R  W  K  D  Y  C  C  *  S  S  L  Q  L  *  L  *  *  I  *  W  E  L  L  S  C  K  C  Q  R  N  L  *  E  T  S  K  W  S  G  L  F  A  K  T  N  F  R  K  Y  F  E  R  Q  K  G  K  N  I  Q  C  *  *  R  N  C  Q  N  E  R  C  Y  W  Q  Q  K  G  F  Y  C  I  *  *  C  G  S  A  G  C  L  R  F  T  Y  W  N  K  G  L  V  L  S  G  E  *  N  S  H  Y  D  K  V  *  E  T  I  E  V  L  *  E  A  H  A  I  Q  </second_frame>
            <third_frame>   C  L  C  I  N  S  Q  L  C  H  R  F  L  G  L  F  S  M  A  T  P  Q  N  R  Y  S  F  H  V  F  L  S  F  R  G  E  D  T  R  K  N  F  T  D  H  L  Y  T  A  L  I  N  A  G  I  R  T  F  R  D  D  D  E  I  R  R  G  E  N  I  E  S  E  L  Q  K  G  I  R  E  S  K  I  S  L  I  V  F  S  K  D  Y  A  S  S  R  W  C  L  D  E  L  V  N  I  L  D  R  R  K  K  E  G  H  T  V  L  P  V  F  Y  T  V  S  P  E  D  V  Q  N  Q  S  G  S  F  A  E  A  F  V  N  H  E  K  R  G  N  A  E  S  G  E  K  R  K  E  W  M  E  K  M  E  K  W  R  L  A  L  K  E  V  A  E  L  E  G  M  C  L  A  K  E  V  D  G :   H  E  A  K  F  I  Q  K  I  I  K  E  I  L  K  R  L  N  R  T  V  L  S  V  P  S  Y  T  V  G  L  E  A  R  V  K  D  I  N  S  W  L  Q  D  E  S  S  E  V  G  I  G  M  I  C  G  L  G  G  V  G  K  T  T  V  A  K  V  A  Y  N  S  N  Y  D  R  F  D  G  S  C  F  L  A  N  V  R  E  I  S  E  K  H  P  N  G  Q  V  Y  L  Q  K  Q  I  F  E  S  I  L  K  G  R  K  E  K  I  Y  N  A  D  E  G  I  V  K  M  K  D  A  I  G  N  K  K  V  F  I  V  F  D  D  V  D  Q  L  D  V  L  D  S  L  I  G  T  R  D  W  F  Y  P  G  S  K  I  L  I  T  T  R  C  E  K  L  L  K  S  Y  E  R  H  M  L  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27991" stop="27438"/>
                    <exon start="24801" stop="24249"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1107</number_coding_nucleotides>
                  <number_encoded_amino_acids>369</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLCINSQLCHRFLGLFSMATPQNRYSFHVFLSFRGEDTRKNFTDHLYTALINAGIRTFRDDDEIRRGENIESELQKGIRESKISLIVFSKDYASSRWCLDELVNILDRRKKEGHTVLPVFYTVSPEDVQNQSGSFAEAFVNHEKRGNAESGEKRKEWMEKMEKWRLALKEVAELEGMCLAKEVDGHEAKFIQKIIKEILKRLNRTVLSVPSYTVGLEARVKDINSWLQDESSEVGIGMICGLGGVGKTTVAKVAYNSNYDRFDGSCFLANVREISEKHPNGQVYLQKQIFESILKGRKEKIYNADEGIVKMKDAIGNKKVFIVFDDVDQLDVLDSLIGTRDWFYPGSKILITTRCEKLLKSYERHMLFK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25055" e_stop="24211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="25055" e_stop="24211" e_length="845"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25055" stop="24211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705163" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAAAATTCATTGATTTAGCATTAAGAGATTGCTTCAAAGTATACTTTCACATGTTCTCTTAACTAGGCACCTAACCAGGTTATTTTGTTTATTGATGATTAATATGACAGATCATCTTGGTGTGTTATATTTGCTCTAAAAGTATTACCATATCAGTGAACTCTTTTTATTTATTGTCCAGTACTTGGCAAGTTGCAGTGCTTTACTGAATTTTCATCTTGTTTTGTCTCTGACATTTACACTGCACCTCAGGCATGAGGCAAAATTCATCCAAAAGATCATTAAGGAGATACTCAAAAGATTGAATCGCACAGTACTTAGTGTACCTTCATACACAGTTGGACTAGAGGCTCGAGTGAAGGACATTAACTCATGGTTACAGGATGAATCCAGTGAAGTTGGCATTGGGATGATCTGTGGACTTGGTGGCGTTGGAAAGACTACTGTTGCTAAAGTAGCTTACAACTCTAATTATGATAGATTTGATGGGAGTTGCTTTCTTGCAAATGTCAGAGAAATCTCTGAGAAACATCCAAATGGTCAGGTTTATTTGCAAAAACAAATTTTCGAAAGTATTTTGAAAGGCAGAAAGGAAAAAATATACAATGCTGATGAAGGAATTGTCAAAATGAAAGATGCTATTGGCAACAAAAAGGTTTTTATTGTATTTGATGATGTGGATCAGCTGGATGTCTTAGATTCACTTATTGGAACAAGGGATTGGTTTTATCCGGGGAGTAAAATTCTCATTACGACAAGGTGTGAGAAACTATTGAAGTCCTATGAGAGGCACATGCTATTCAAGATAAAGGAACTTGGAGATGACGAGTCTCTAAAGCTCTT</gDNA_template>
            <first_frame> C  K  I  H  *  F  S  I  K  R  L  L  Q  S  I  L  S  H  V  L  L  T  R  H  L  T  R  L  F  C  L  L  M  I  N  M  T  D  H  L  G  V  L  Y  L  L  *  K  Y  Y  H  I  S  E  L  F  L  F  I  V  Q  Y  L  A  S  C  S  A  L  L  N  F  H  L  V  L  S  L  T  F  T  L  H  L  R  H  E  A  K  F  I  Q  K  I  I  K  E  I  L  K  R  L  N  R  T  V  L  S  V  P  S  Y  T  V  G  L  E  A  R  V  K  D  I  N  S  W  L  Q  D  E  S  S  E  V  G  I  G  M  I  C  G  L  G  G  V  G  K  T  T  V  A  K  V  A  Y  N  S  N  Y  D  R  F  D  G  S  C  F  L  A  N  V  R  E  I  S  E  K  H  P  N  G  Q  V  Y  L  Q  K  Q  I  F  E  S  I  L  K  G  R  K  E  K  I  Y  N  A  D  E  G  I  V  K  M  K  D  A  I  G  N  K  K  V  F  I  V  F  D  D  V  D  Q  L  D  V  L  D  S  L  I  G  T  R  D  W  F  Y  P  G  S  K  I  L  I  T  T  R  C  E  K  L  L  K  S  Y  E  R  H  M  L  F  K  I  K  E  L  G  D  D  E  S  L  K  L   </first_frame>
            <second_frame>  V  K  F  I  D  L  A  L  R  D  C  F  K  V  Y  F  H  M  F  S  *  L  G  T  *  P  G  Y  F  V  Y  *  *  L  I  *  Q  I  I  L  V  C  Y  I  C  S  K  S  I  T  I  S  V  N  S  F  Y  L  L  S  S  T  W  Q  V  A  V  L  Y  *  I  F  I  L  F  C  L  *  H  L  H  C  T  S  G  M  R  Q  N  S  S  K  R  S  L  R  R  Y  S  K  D  *  I  A  Q  Y  L  V  Y  L  H  T  Q  L  D  *  R  L  E  *  R  T  L  T  H  G  Y  R  M  N  P  V  K  L  A  L  G  *  S  V  D  L  V  A  L  E  R  L  L  L  L  K  *  L  T  T  L  I  M  I  D  L  M  G  V  A  F  L  Q  M  S  E  K  S  L  R  N  I  Q  M  V  R  F  I  C  K  N  K  F  S  K  V  F  *  K  A  E  R  K  K  Y  T  M  L  M  K  E  L  S  K  *  K  M  L  L  A  T  K  R  F  L  L  Y  L  M  M  W  I  S  W  M  S  *  I  H  L  L  E  Q  G  I  G  F  I  R  G  V  K  F  S  L  R  Q  G  V  R  N  Y  *  S  P  M  R  G  T  C  Y  S  R  *  R  N  L  E  M  T  S  L  *  S  S  </second_frame>
            <third_frame>   *  N  S  L  I  *  H  *  E  I  A  S  K  Y  T  F  T  C  S  L  N  *  A  P  N  Q  V  I  L  F  I  D  D  *  Y  D  R  S  S  W  C  V  I  F  A  L  K  V  L  P  Y  Q  *  T  L  F  I  Y  C  P  V  L  G  K  L  Q  C  F  T  E  F  S  S  C  F  V  S  D  I  Y  T  A  P  Q  A  *  G  K  I  H  P  K  D  H  *  G  D  T  Q  K  I  E  S  H  S  T  *  C  T  F  I  H  S  W  T  R  G  S  S  E  G  H  *  L  M  V  T  G  *  I  Q  *  S  W  H  W  D  D  L  W  T  W  W  R  W  K  D  Y  C  C  *  S  S  L  Q  L  *  L  *  *  I  *  W  E  L  L  S  C  K  C  Q  R  N  L  *  E  T  S  K  W  S  G  L  F  A  K  T  N  F  R  K  Y  F  E  R  Q  K  G  K  N  I  Q  C  *  *  R  N  C  Q  N  E  R  C  Y  W  Q  Q  K  G  F  Y  C  I  *  *  C  G  S  A  G  C  L  R  F  T  Y  W  N  K  G  L  V  L  S  G  E  *  N  S  H  Y  D  K  V  *  E  T  I  E  V  L  *  E  A  H  A  I  Q  D  K  G  T  W  R  *  R  V  S  K  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24914" stop="24213"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYYHISELFLFIVQYLASCSALLNFHLVLSLTFTLHLRHEAKFIQKIIKEILKRLNRTVLSVPSYTVGLEARVKDINSWLQDESSEVGIGMICGLGGVGKTTVAKVAYNSNYDRFDGSCFLANVREISEKHPNGQVYLQKQIFESILKGRKEKIYNADEGIVKMKDAIGNKKVFIVFDDVDQLDVLDSLIGTRDWFYPGSKILITTRCEKLLKSYERHMLFKIKELGDDESLKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="31580" PGL_stop="28505"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31580" e_stop="31261"/>
            <exon e_start="28709" e_stop="28505"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31580" e_stop="31261" e_length="320"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.991">
            <gDNA_intron_boundary i_start="31260" i_stop="28710" i_length="2551"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28709" e_stop="28505" e_length="205"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31580" stop="31261"/>
              <exon start="28709" stop="28505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31569" stop="31261"/>
              <exon start="28709" stop="28546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31566" stop="31261"/>
              <exon start="28709" stop="28542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31558" stop="31261"/>
              <exon start="28709" stop="28540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31558" stop="31261"/>
              <exon start="28709" stop="28544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31550" stop="31360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31549" stop="31261"/>
              <exon start="28709" stop="28554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31548" stop="31261"/>
              <exon start="28709" stop="28519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31548" stop="31261"/>
              <exon start="28709" stop="28529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31547" stop="31261"/>
              <exon start="28709" stop="28520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31547" stop="31261"/>
              <exon start="28709" stop="28529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31542" stop="31261"/>
              <exon start="28709" stop="28562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279292" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31542" stop="31261"/>
              <exon start="28709" stop="28571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277245" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31541" stop="31261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31539" stop="31261"/>
              <exon start="28709" stop="28505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31539" stop="31261"/>
              <exon start="28709" stop="28505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31535" stop="31261"/>
              <exon start="28709" stop="28544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31535" stop="31261"/>
              <exon start="28709" stop="28544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31535" stop="31363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31534" stop="31261"/>
              <exon start="28709" stop="28505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31519" stop="31261"/>
              <exon start="28709" stop="28550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31512" stop="31261"/>
              <exon start="28709" stop="28529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31496" stop="31261"/>
              <exon start="28709" stop="28529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31456" stop="31261"/>
              <exon start="28709" stop="28529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGTGCTCCAAATCAATTTGGGTGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTG : GTGAGGTGGTAGTGCTACAACTGGGATGACTATACAGTTCAGTCGTGTTTTTTTCTCAGTAATCATCAATCAATAAGATACTTAACAAACATGTCCACATGTTGCCTCAATTTTTTTGAGACTTGTGTTGTAACAAGATTAATGAGCAGTTTGCTTTACTATTTATGTTCTGGTTTTCTATATATCTACTCTCTACTTTCTCTCC</gDNA_template>
            <first_frame> Q  C  S  K  S  I  W  V  K  I  K  K  R  K  K  N  R  S  K  M  G  K  P  L  G  T  T  G  E  F  F  R  R  R  D  E  W  R  K  H  P  M  L  S  N  Q  F  R  H  A  F  P  G  L  G  I  A  V  V  A  F  S  I  Y  C  V  G  E  F  A  Y  N  K  M  S  T  P  S  H  S  T  S  S  A  A  A  S  H  S  H  *  D  S  K  W  V  V  L  V  V  N  P  N  C  L  F  W :   *  G  G  S  A  T  T  G  M  T  I  Q  F  S  R  V  F  F  S  V  I  I  N  Q  *  D  T  *  Q  T  C  P  H  V  A  S  I  F  L  R  L  V  L  *  Q  D  *  *  A  V  C  F  T  I  Y  V  L  V  F  Y  I  S  T  L  Y  F  L  S </first_frame>
            <second_frame>  S  A  P  N  Q  F  G  *  K  S  R  R  G  R  R  T  D  R  K  W  G  S  H  W  E  P  P  E  S  F  S  G  E  G  T  S  G  G  S  I  L  C  C  P  I  S  S  A  T  L  S  L  V  L  A  S  L  L  *  P  S  V  S  I  V  S  A  N  L  P  I  T  R  C  L  L  L  L  T  P  P  L  P  P  L  L  L  T  L  T  E  I  R  N  G  S  C  L  *  *  T  P  I  V  S  F   : G  E  V  V  V  L  Q  L  G  *  L  Y  S  S  V  V  F  F  S  Q  *  S  S  I  N  K  I  L  N  K  H  V  H  M  L  P  Q  F  F  *  D  L  C  C  N  K  I  N  E  Q  F  A  L  L  F  M  F  W  F  S  I  Y  L  L  S  T  F  S   </second_frame>
            <third_frame>   V  L  Q  I  N  L  G  E  N  Q  E  E  E  E  E  Q  I  E  N  G  E  A  I  G  N  H  R  R  V  F  Q  E  K  G  R  V  E  E  A  S  Y  V  V  Q  S  V  P  P  R  F  P  W  S  W  H  R  C  C  S  L  Q  Y  L  L  C  R  R  I  C  L  *  Q  D  V  Y  S  F  S  L  H  L  F  R  R  C  F  S  L  S  L  R  F  E  M  G  R  A  C  S  E  P  Q  L  S  L  L  :  V  R  W  *  C  Y  N  W  D  D  Y  T  V  Q  S  C  F  F  L  S  N  H  Q  S  I  R  Y  L  T  N  M  S  T  C  C  L  N  F  F  E  T  C  V  V  T  R  L  M  S  S  L  L  Y  Y  L  C  S  G  F  L  Y  I  Y  S  L  L  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31580" stop="31308"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QCSKSIWVKIKKRKKNRSKMGKPLGTTGEFFRRRDEWRKHPMLSNQFRHAFPGLGIAVVAFSIYCVGEFAYNKMSTPSHSTSSAAASHSH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31578" stop="31366"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLQINLGENQEEEEEQIENGEAIGNHRRVFQEKGRVEEASYVVQSVPPRFPWSWHRCCSLQYLLCRRICL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28697" stop="28506"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CYNWDDYTVQSCFFLSNHQSIRYLTNMSTCCLNFFETCVVTRLMSSLLYYLCSGFLYIYSLLSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31558" e_stop="31094"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="31558" e_stop="31094" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31558" stop="31094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31550" stop="31360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31541" stop="31261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31535" stop="31363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAAATCAAGAAGAGGAAGAAGAACAGATCGAAAATGGGGAAGCCATTGGGAACCACCGGAGAGTTTTTCAGGAGAAGGGACGAGTGGAGGAAGCATCCTATGTTGTCCAATCAGTTCCGCCACGCTTTCCCTGGTCTTGGCATCGCTGTTGTAGCCTTCAGTATCTATTGTGTCGGCGAATTTGCCTATAACAAGATGTCTACTCCTTCTCACTCCACCTCTTCCGCCGCTGCTTCTCACTCTCACTGAGATTCGAAATGGGTCGTGCTTGTAGTGAACCCCAATTGTCTCTTTTGGTACGACCTCTTTCTGATTTTGTGATTCTTTATTATCTCAACCAACTGTTTGAAGTCTGTGTTTCGTGGAATACAATTTGATGTGCTTGAAAGAAGTGGGGTTTGTGAATTTTATTACTTTTATGAAATGGGTCTCATTGATATGCTAATGATCCGAATGGGGGTCA</gDNA_template>
            <first_frame> *  K  S  R  R  G  R  R  T  D  R  K  W  G  S  H  W  E  P  P  E  S  F  S  G  E  G  T  S  G  G  S  I  L  C  C  P  I  S  S  A  T  L  S  L  V  L  A  S  L  L  *  P  S  V  S  I  V  S  A  N  L  P  I  T  R  C  L  L  L  L  T  P  P  L  P  P  L  L  L  T  L  T  E  I  R  N  G  S  C  L  *  *  T  P  I  V  S  F  G  T  T  S  F  *  F  C  D  S  L  L  S  Q  P  T  V  *  S  L  C  F  V  E  Y  N  L  M  C  L  K  E  V  G  F  V  N  F  I  T  F  M  K  W  V  S  L  I  C  *  *  S  E  W  G  S </first_frame>
            <second_frame>  E  N  Q  E  E  E  E  E  Q  I  E  N  G  E  A  I  G  N  H  R  R  V  F  Q  E  K  G  R  V  E  E  A  S  Y  V  V  Q  S  V  P  P  R  F  P  W  S  W  H  R  C  C  S  L  Q  Y  L  L  C  R  R  I  C  L  *  Q  D  V  Y  S  F  S  L  H  L  F  R  R  C  F  S  L  S  L  R  F  E  M  G  R  A  C  S  E  P  Q  L  S  L  L  V  R  P  L  S  D  F  V  I  L  Y  Y  L  N  Q  L  F  E  V  C  V  S  W  N  T  I  *  C  A  *  K  K  W  G  L  *  I  L  L  L  L  *  N  G  S  H  *  Y  A  N  D  P  N  G  G   </second_frame>
            <third_frame>   K  I  K  K  R  K  K  N  R  S  K  M  G  K  P  L  G  T  T  G  E  F  F  R  R  R  D  E  W  R  K  H  P  M  L  S  N  Q  F  R  H  A  F  P  G  L  G  I  A  V  V  A  F  S  I  Y  C  V  G  E  F  A  Y  N  K  M  S  T  P  S  H  S  T  S  S  A  A  A  S  H  S  H  *  D  S  K  W  V  V  L  V  V  N  P  N  C  L  F  W  Y  D  L  F  L  I  L  *  F  F  I  I  S  T  N  C  L  K  S  V  F  R  G  I  Q  F  D  V  L  E  R  S  G  V  C  E  F  Y  Y  F  Y  E  M  G  L  I  D  M  L  M  I  R  M  G  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31556" stop="31308"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIKKRKKNRSKMGKPLGTTGEFFRRRDEWRKHPMLSNQFRHAFPGLGIAVVAFSIYCVGEFAYNKMSTPSHSTSSAAASHSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="35445" PGL_stop="40601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35445" e_stop="35716"/>
            <exon e_start="35799" e_stop="35876"/>
            <exon e_start="36111" e_stop="36166"/>
            <exon e_start="36731" e_stop="36810"/>
            <exon e_start="36973" e_stop="37055"/>
            <exon e_start="37810" e_stop="37887"/>
            <exon e_start="38129" e_stop="38197"/>
            <exon e_start="39114" e_stop="39182"/>
            <exon e_start="39254" e_stop="39300"/>
            <exon e_start="40156" e_stop="40246"/>
            <exon e_start="40356" e_stop="40601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.822" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.578" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.767" acc_prob="0.016" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35445" e_stop="35716" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="0.822" acc_prob="0.985">
            <gDNA_intron_boundary i_start="35717" i_stop="35798" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35799" e_stop="35876" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.892" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35877" i_stop="36110" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36111" e_stop="36166" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="36167" i_stop="36730" i_length="564"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36731" e_stop="36810" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.578" acc_prob="0.981">
            <gDNA_intron_boundary i_start="36811" i_stop="36972" i_length="162"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36973" e_stop="37055" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="37056" i_stop="37809" i_length="754"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="37810" e_stop="37887" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.948">
            <gDNA_intron_boundary i_start="37888" i_stop="38128" i_length="241"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38129" e_stop="38197" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38198" i_stop="39113" i_length="916"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39114" e_stop="39182" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.767" acc_prob="0.016">
            <gDNA_intron_boundary i_start="39183" i_stop="39253" i_length="71"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="39254" e_stop="39300" e_length="47"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39301" i_stop="40155" i_length="855"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="40156" e_stop="40246" e_length="91"/>
          </exon>
          <intron i_serial="10" don_prob="0.941" acc_prob="1.000">
            <gDNA_intron_boundary i_start="40247" i_stop="40355" i_length="109"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="40356" e_stop="40601" e_length="246"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35445" stop="35716"/>
              <exon start="35799" stop="35876"/>
              <exon start="36111" stop="36166"/>
              <exon start="36731" stop="36810"/>
              <exon start="36973" stop="37011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35451" stop="35716"/>
              <exon start="35799" stop="35876"/>
              <exon start="36111" stop="36166"/>
              <exon start="36731" stop="36810"/>
              <exon start="36973" stop="37055"/>
              <exon start="37810" stop="37887"/>
              <exon start="38129" stop="38135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35455" stop="35716"/>
              <exon start="35799" stop="35876"/>
              <exon start="36111" stop="36166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35456" stop="35716"/>
              <exon start="35799" stop="35876"/>
              <exon start="36111" stop="36166"/>
              <exon start="36731" stop="36810"/>
              <exon start="36973" stop="37055"/>
              <exon start="37810" stop="37853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35466" stop="35716"/>
              <exon start="35799" stop="35876"/>
              <exon start="36111" stop="36166"/>
              <exon start="36731" stop="36810"/>
              <exon start="36973" stop="37055"/>
              <exon start="37810" stop="37887"/>
              <exon start="38129" stop="38197"/>
              <exon start="39114" stop="39173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35494" stop="35716"/>
              <exon start="35799" stop="35876"/>
              <exon start="36111" stop="36166"/>
              <exon start="36731" stop="36810"/>
              <exon start="36973" stop="37055"/>
              <exon start="37810" stop="37887"/>
              <exon start="38129" stop="38197"/>
              <exon start="39114" stop="39171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35583" stop="35716"/>
              <exon start="35799" stop="35876"/>
              <exon start="36111" stop="36166"/>
              <exon start="36731" stop="36810"/>
              <exon start="36973" stop="37055"/>
              <exon start="37810" stop="37887"/>
              <exon start="38129" stop="38197"/>
              <exon start="39114" stop="39182"/>
              <exon start="39254" stop="39270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35583" stop="35716"/>
              <exon start="35799" stop="35876"/>
              <exon start="36111" stop="36166"/>
              <exon start="36731" stop="36807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35583" stop="35716"/>
              <exon start="35799" stop="35876"/>
              <exon start="36111" stop="36132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35594" stop="35716"/>
              <exon start="35799" stop="35876"/>
              <exon start="36111" stop="36166"/>
              <exon start="36731" stop="36810"/>
              <exon start="36973" stop="37055"/>
              <exon start="37810" stop="37887"/>
              <exon start="38129" stop="38147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35847" stop="35876"/>
              <exon start="36111" stop="36166"/>
              <exon start="36731" stop="36810"/>
              <exon start="36973" stop="37055"/>
              <exon start="37810" stop="37887"/>
              <exon start="38129" stop="38197"/>
              <exon start="39114" stop="39182"/>
              <exon start="39254" stop="39300"/>
              <exon start="40156" stop="40246"/>
              <exon start="40356" stop="40571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36143" stop="36166"/>
              <exon start="36731" stop="36810"/>
              <exon start="36973" stop="37055"/>
              <exon start="37810" stop="37887"/>
              <exon start="38129" stop="38197"/>
              <exon start="39114" stop="39182"/>
              <exon start="39254" stop="39300"/>
              <exon start="40156" stop="40209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38158" stop="38197"/>
              <exon start="39114" stop="39182"/>
              <exon start="39254" stop="39300"/>
              <exon start="40156" stop="40246"/>
              <exon start="40356" stop="40569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38179" stop="38197"/>
              <exon start="39114" stop="39182"/>
              <exon start="39254" stop="39300"/>
              <exon start="40156" stop="40246"/>
              <exon start="40356" stop="40601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374673" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTATTTTCATTCATTTTCAGTTTTCTCTCTTTGAACTGAGGGAGTAAAGTACAACAACATGTCTACTCTTCAATTGGGTATCATCCTTTCATCTTCCTCTCCAATGTTCTTGGCAAGTAATTCTCATATACCCAAGAATGTATTGCCTTCTATCTCACTTTTCCCCACCTACTTTGTAAAGAATCCTTGCAGAAGAACCTACAGTCATGCTGACCCAAGAAGGGGTCTTTTCAAGATTTCTTGTTCTTCCACCTCAGAAAATCTTAACAAG : GAGTCAGATGTAGTGGTGGTGGAGGAGAAAAGTGTTTCTGTGATTCTTCTTGCTGGAGGAAAGGGGAAAAGAATGGGT : GCAAGCATGCCAAAGCAGTATCTTCCACTTCTAGGCCAGCCAATTGCATTGTACAG : TTTCTACACTTTCTCCAAGATGCCTCAGGTGAAGGAAATTATTGTTGTATGTGATCCTTCTTATCAAGACATTTTTGAAG : ATGCCAAAGAGTATATCCAAGTCGACTTAAAATTTGCATTGCCTGGGAAGGAAAGACAAGATTCTGTATACAGCGGACTTCAG : GAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAG : GTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAG : GCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAG : ATAATCAAACCTGAGTTGCTTAAGAAGGGTTTCGAGCTTGTCAACAG : GGAAGGACTTGAAGTAACAGATGATGTATCAATAGTGGAGCACCTTAAACATCCAGTATATATTACTGAAGGCTCTTACACTAACATAAAG : GTTACAACGCCTGATGATTTGCTTCTTGCAGAAAGAATATTGAATATTGAAGAATCTTAGGGTTTTCAATTTTCTTAGGCTTTTTTTTTGTTCAAACATTATAATTCCCTGGAAATTTGTATTCTGAATAGGTGAAGTTAACCTTCCACAAGAGTTCCTCAGAAAATTGAGTCTTGTAAACTTATTGGCAAAAGAAAGCAACATTCTTTTCAAGGTTTTCAGCTCATGACTGAGACTTTGACAAAA</gDNA_template>
            <first_frame> S  I  F  I  H  F  Q  F  S  L  F  E  L  R  E  *  S  T  T  T  C  L  L  F  N  W  V  S  S  F  H  L  P  L  Q  C  S  W  Q  V  I  L  I  Y  P  R  M  Y  C  L  L  S  H  F  S  P  P  T  L  *  R  I  L  A  E  E  P  T  V  M  L  T  Q  E  G  V  F  S  R  F  L  V  L  P  P  Q  K  I  L  T  R :   S  Q  M  *  W  W  W  R  R  K  V  F  L  *  F  F  L  L  E  E  R  G  K  E  W  V :   Q  A  C  Q  S  S  I  F  H  F  *  A  S  Q  L  H  C  T   : V  S  T  L  S  P  R  C  L  R  *  R  K  L  L  L  Y  V  I  L  L  I  K  T  F  L  K  :  M  P  K  S  I  S  K  S  T  *  N  L  H  C  L  G  R  K  D  K  I  L  Y  T  A  D  F  R :   K  L  I  Q  T  P  N  S  H  A  S  M  T  L  Q  D  L  L  Y  K  L  K  M  *  K  R :   S  *  R  M  V  G  W  L  E  Q  Q  F  L  V  F  L  P  K  L  Q  S  K  R :   Q  T  V  N  L  S  L  *  R  L  L  T  G  K  H  F  G  K  C  R  H  L  R :   *  S  N  L  S  C  L  R  R  V  S  S  L  S  T   : G  K  D  L  K  *  Q  M  M  Y  Q  *  W  S  T  L  N  I  Q  Y  I  L  L  K  A  L  T  L  T  *  R :   L  Q  R  L  M  I  C  F  L  Q  K  E  Y  *  I  L  K  N  L  R  V  F  N  F  L  R  L  F  F  C  S  N  I  I  I  P  W  K  F  V  F  *  I  G  E  V  N  L  P  Q  E  F  L  R  K  L  S  L  V  N  L  L  A  K  E  S  N  I  L  F  K  V  F  S  S  *  L  R  L  *  Q   </first_frame>
            <second_frame>  L  F  S  F  I  F  S  F  L  S  L  N  *  G  S  K  V  Q  Q  H  V  Y  S  S  I  G  Y  H  P  F  I  F  L  S  N  V  L  G  K  *  F  S  Y  T  Q  E  C  I  A  F  Y  L  T  F  P  H  L  L  C  K  E  S  L  Q  K  N  L  Q  S  C  *  P  K  K  G  S  F  Q  D  F  L  F  F  H  L  R  K  S  *  Q   : G  V  R  C  S  G  G  G  G  E  K  C  F  C  D  S  S  C  W  R  K  G  E  K  N  G   : C  K  H  A  K  A  V  S  S  T  S  R  P  A  N  C  I  V  Q  :  F  L  H  F  L  Q  D  A  S  G  E  G  N  Y  C  C  M  *  S  F  L  S  R  H  F  *  R :   C  Q  R  V  Y  P  S  R  L  K  I  C  I  A  W  E  G  K  T  R  F  C  I  Q  R  T  S   : G  S  *  F  K  L  Q  T  R  M  H  P  *  L  C  K  T  S  C  T  N  *  R  C  R  K   : G  P  E  G  W  L  A  G  W  S  S  S  S  W  C  S  C  Q  S  Y  N  Q  R   : G  K  Q  *  I  F  R  C  E  D  S  *  Q  E  N  T  L  G  N  A  D  T  S   : D  N  Q  T  *  V  A  *  E  G  F  R  A  C  Q  Q  :  G  R  T  *  S  N  R  *  C  I  N  S  G  A  P  *  T  S  S  I  Y  Y  *  R  L  L  H  *  H  K   : G  Y  N  A  *  *  F  A  S  C  R  K  N  I  E  Y  *  R  I  L  G  F  S  I  F  L  G  F  F  F  V  Q  T  L  *  F  P  G  N  L  Y  S  E  *  V  K  L  T  F  H  K  S  S  S  E  N  *  V  L  *  T  Y  W  Q  K  K  A  T  F  F  S  R  F  S  A  H  D  *  D  F  D  K  </second_frame>
            <third_frame>   Y  F  H  S  F  S  V  F  S  L  *  T  E  G  V  K  Y  N  N  M  S  T  L  Q  L  G  I  I  L  S  S  S  S  P  M  F  L  A  S  N  S  H  I  P  K  N  V  L  P  S  I  S  L  F  P  T  Y  F  V  K  N  P  C  R  R  T  Y  S  H  A  D  P  R  R  G  L  F  K  I  S  C  S  S  T  S  E  N  L  N  K  :  E  S  D  V  V  V  V  E  E  K  S  V  S  V  I  L  L  A  G  G  K  G  K  R  M  G  :  A  S  M  P  K  Q  Y  L  P  L  L  G  Q  P  I  A  L  Y  S :   F  Y  T  F  S  K  M  P  Q  V  K  E  I  I  V  V  C  D  P  S  Y  Q  D  I  F  E   : D  A  K  E  Y  I  Q  V  D  L  K  F  A  L  P  G  K  E  R  Q  D  S  V  Y  S  G  L  Q  :  E  V  D  S  N  S  K  L  A  C  I  H  D  S  A  R  P  L  V  Q  I  E  D  V  E  K  :  V  L  K  D  G  W  L  V  G  A  A  V  L  G  V  P  A  K  A  T  I  K  E  :  A  N  S  E  S  F  V  V  K  T  L  D  R  K  T  L  W  E  M  Q  T  P  Q  :  I  I  K  P  E  L  L  K  K  G  F  E  L  V  N  R :   E  G  L  E  V  T  D  D  V  S  I  V  E  H  L  K  H  P  V  Y  I  T  E  G  S  Y  T  N  I  K  :  V  T  T  P  D  D  L  L  L  A  E  R  I  L  N  I  E  E  S  *  G  F  Q  F  S  *  A  F  F  L  F  K  H  Y  N  S  L  E  I  C  I  L  N  R  *  S  *  P  S  T  R  V  P  Q  K  I  E  S  C  K  L  I  G  K  R  K  Q  H  S  F  Q  G  F  Q  L  M  T  E  T  L  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35480" stop="35716"/>
                    <exon start="35799" stop="35876"/>
                    <exon start="36111" stop="36166"/>
                    <exon start="36731" stop="36810"/>
                    <exon start="36973" stop="37055"/>
                    <exon start="37810" stop="37887"/>
                    <exon start="38129" stop="38197"/>
                    <exon start="39114" stop="39182"/>
                    <exon start="39254" stop="39300"/>
                    <exon start="40156" stop="40246"/>
                    <exon start="40356" stop="40415"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEGVKYNNMSTLQLGIILSSSSPMFLASNSHIPKNVLPSISLFPTYFVKNPCRRTYSHADPRRGLFKISCSSTSENLNKESDVVVVEEKSVSVILLAGGKGKRMGASMPKQYLPLLGQPIALYSFYTFSKMPQVKEIIVVCDPSYQDIFEDAKEYIQVDLKFALPGKERQDSVYSGLQEVDSNSKLACIHDSARPLVQIEDVEKVLKDGWLVGAAVLGVPAKATIKEANSESFVVKTLDRKTLWEMQTPQIIKPELLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLLAERILNIEES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37806" e_stop="37887"/>
            <exon e_start="38129" e_stop="38197"/>
            <exon e_start="39114" e_stop="39182"/>
            <exon e_start="39254" e_stop="39300"/>
            <exon e_start="40156" e_stop="40246"/>
            <exon e_start="40356" e_stop="40601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.948" e_score="0.951"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.767" acc_prob="0.016" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="37806" e_stop="37887" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.948">
            <gDNA_intron_boundary i_start="37888" i_stop="38128" i_length="241"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38129" e_stop="38197" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38198" i_stop="39113" i_length="916"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39114" e_stop="39182" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.767" acc_prob="0.016">
            <gDNA_intron_boundary i_start="39183" i_stop="39253" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39254" e_stop="39300" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39301" i_stop="40155" i_length="855"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40156" e_stop="40246" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.941" acc_prob="1.000">
            <gDNA_intron_boundary i_start="40247" i_stop="40355" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40356" e_stop="40601" e_length="246"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37806" stop="37887"/>
              <exon start="38129" stop="38197"/>
              <exon start="39114" stop="39182"/>
              <exon start="39254" stop="39300"/>
              <exon start="40156" stop="40236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280064" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38158" stop="38197"/>
              <exon start="39114" stop="39182"/>
              <exon start="39254" stop="39300"/>
              <exon start="40156" stop="40246"/>
              <exon start="40356" stop="40569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38179" stop="38197"/>
              <exon start="39114" stop="39182"/>
              <exon start="39254" stop="39300"/>
              <exon start="40156" stop="40246"/>
              <exon start="40356" stop="40601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374673" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGGAAGTTGATTCAAACTCCAAACTCGCATGCATCCATGACTCTGCAAGACCTCTTGTACAAATTGAAGATGTAGAAAAG : GTCCTGAAGGATGGTTGGCTGGTTGGAGCAGCAGTTCTTGGTGTTCCTGCCAAAGCTACAATCAAAGAG : GCAAACAGTGAATCTTTCGTTGTGAAGACTCTTGACAGGAAAACACTTTGGGAAATGCAGACACCTCAG : ATAATCAAACCTGAGTTGCTTAAGAAGGGTTTCGAGCTTGTCAACAG : GGAAGGACTTGAAGTAACAGATGATGTATCAATAGTGGAGCACCTTAAACATCCAGTATATATTACTGAAGGCTCTTACACTAACATAAAG : GTTACAACGCCTGATGATTTGCTTCTTGCAGAAAGAATATTGAATATTGAAGAATCTTAGGGTTTTCAATTTTCTTAGGCTTTTTTTTTGTTCAAACATTATAATTCCCTGGAAATTTGTATTCTGAATAGGTGAAGTTAACCTTCCACAAGAGTTCCTCAGAAAATTGAGTCTTGTAAACTTATTGGCAAAAGAAAGCAACATTCTTTTCAAGGTTTTCAGCTCATGACTGAGACTTTGACAAAA</gDNA_template>
            <first_frame> P  G  S  *  F  K  L  Q  T  R  M  H  P  *  L  C  K  T  S  C  T  N  *  R  C  R  K   : G  P  E  G  W  L  A  G  W  S  S  S  S  W  C  S  C  Q  S  Y  N  Q  R   : G  K  Q  *  I  F  R  C  E  D  S  *  Q  E  N  T  L  G  N  A  D  T  S   : D  N  Q  T  *  V  A  *  E  G  F  R  A  C  Q  Q  :  G  R  T  *  S  N  R  *  C  I  N  S  G  A  P  *  T  S  S  I  Y  Y  *  R  L  L  H  *  H  K   : G  Y  N  A  *  *  F  A  S  C  R  K  N  I  E  Y  *  R  I  L  G  F  S  I  F  L  G  F  F  F  V  Q  T  L  *  F  P  G  N  L  Y  S  E  *  V  K  L  T  F  H  K  S  S  S  E  N  *  V  L  *  T  Y  W  Q  K  K  A  T  F  F  S  R  F  S  A  H  D  *  D  F  D  K  </first_frame>
            <second_frame>  Q  E  V  D  S  N  S  K  L  A  C  I  H  D  S  A  R  P  L  V  Q  I  E  D  V  E  K  :  V  L  K  D  G  W  L  V  G  A  A  V  L  G  V  P  A  K  A  T  I  K  E  :  A  N  S  E  S  F  V  V  K  T  L  D  R  K  T  L  W  E  M  Q  T  P  Q  :  I  I  K  P  E  L  L  K  K  G  F  E  L  V  N  R :   E  G  L  E  V  T  D  D  V  S  I  V  E  H  L  K  H  P  V  Y  I  T  E  G  S  Y  T  N  I  K  :  V  T  T  P  D  D  L  L  L  A  E  R  I  L  N  I  E  E  S  *  G  F  Q  F  S  *  A  F  F  L  F  K  H  Y  N  S  L  E  I  C  I  L  N  R  *  S  *  P  S  T  R  V  P  Q  K  I  E  S  C  K  L  I  G  K  R  K  Q  H  S  F  Q  G  F  Q  L  M  T  E  T  L  T  K </second_frame>
            <third_frame>   R  K  L  I  Q  T  P  N  S  H  A  S  M  T  L  Q  D  L  L  Y  K  L  K  M  *  K  R :   S  *  R  M  V  G  W  L  E  Q  Q  F  L  V  F  L  P  K  L  Q  S  K  R :   Q  T  V  N  L  S  L  *  R  L  L  T  G  K  H  F  G  K  C  R  H  L  R :   *  S  N  L  S  C  L  R  R  V  S  S  L  S  T   : G  K  D  L  K  *  Q  M  M  Y  Q  *  W  S  T  L  N  I  Q  Y  I  L  L  K  A  L  T  L  T  *  R :   L  Q  R  L  M  I  C  F  L  Q  K  E  Y  *  I  L  K  N  L  R  V  F  N  F  L  R  L  F  F  C  S  N  I  I  I  P  W  K  F  V  F  *  I  G  E  V  N  L  P  Q  E  F  L  R  K  L  S  L  V  N  L  L  A  K  E  S  N  I  L  F  K  V  F  S  S  *  L  R  L  *  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37807" stop="37887"/>
                    <exon start="38129" stop="38197"/>
                    <exon start="39114" stop="39182"/>
                    <exon start="39254" stop="39300"/>
                    <exon start="40156" stop="40246"/>
                    <exon start="40356" stop="40415"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QEVDSNSKLACIHDSARPLVQIEDVEKVLKDGWLVGAAVLGVPAKATIKEANSESFVVKTLDRKTLWEMQTPQIIKPELLKKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLLAERILNIEES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="44943" PGL_stop="40872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44943" e_stop="44836"/>
            <exon e_start="44748" e_stop="44532"/>
            <exon e_start="43978" e_stop="43460"/>
            <exon e_start="42651" e_stop="41928"/>
            <exon e_start="41320" e_stop="41248"/>
            <exon e_start="41164" e_stop="40872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.849" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.887" e_score="0.945"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44943" e_stop="44836" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.849" acc_prob="0.987">
            <gDNA_intron_boundary i_start="44835" i_stop="44749" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44748" e_stop="44532" e_length="217"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.802">
            <gDNA_intron_boundary i_start="44531" i_stop="43979" i_length="553"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43978" e_stop="43460" e_length="519"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.923">
            <gDNA_intron_boundary i_start="43459" i_stop="42652" i_length="808"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42651" e_stop="41928" e_length="724"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41927" i_stop="41321" i_length="607"/>
          </intron>
          <exon e_serial="5" e_score="0.945">
            <gDNA_exon_boundary e_start="41320" e_stop="41248" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.887">
            <gDNA_intron_boundary i_start="41247" i_stop="41165" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="0.943">
            <gDNA_exon_boundary e_start="41164" e_stop="40872" e_length="293"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44943" stop="44836"/>
              <exon start="44748" stop="44532"/>
              <exon start="43978" stop="43587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44742" stop="44532"/>
              <exon start="43978" stop="43460"/>
              <exon start="42651" stop="42559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44679" stop="44532"/>
              <exon start="43978" stop="43460"/>
              <exon start="42651" stop="42554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44679" stop="44532"/>
              <exon start="43978" stop="43460"/>
              <exon start="42651" stop="42622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43568" stop="43460"/>
              <exon start="42651" stop="41943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42283" stop="41928"/>
              <exon start="41320" stop="41248"/>
              <exon start="41164" stop="40872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433270" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42075" stop="41928"/>
              <exon start="41320" stop="41248"/>
              <exon start="41164" stop="40900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTGATTGCTCTAAATGCAGATGGATCACTTCGAGATGCAGAAACTATGTTAGACCAGCTCAGTTTGTTGGGGAAACGAATCACTACCTCTTTGGTTAATGATCTG : ATTGGTGTGGTTTCAGATGAGAAGTTACTGGAACTTTTAGAGCTAGCCATGTCATCAGACACTGCAGAAACAGTGAAAAGAGCCCGGGAATTGTTGGATTCAGGTGTTGATCCAATAGTTTTGATGTCTCAATTGGCTACTCTCATCATGGATATAATTGCTGGAACTCATCCAATACTTGATGCAAAGCAAACTGATATCTCTGGCGGTAAAAGTT : TGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCCACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGATCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCATGTAAGTCAGGTTCTCCCTCATCTTTTGCGAAAGCCAACCGTCGAAACTCAGCAAGTAGAGAATTGACACTTTCATCAATGAATGGGGAGCCATTGGGTGGTCCACATAATGACACTAAGGACAGCAAGACAGCATCTAGGTGCCCCAACACAAACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAG : GTGGTTTTGTTGCTCATATTGCCTTTCGTGATAGCAAGGTTAAATTGAGAGCAGAGAGGTTTCTTAGCAGTATCACGAATTCATTTGAAACTATTTTAAGGAGCAATGTAGAGGTTAGACTTGTTCTGCTACCAGATGCGGAGACATCTGATGACAGTGGAAAGCCAATTACATTGATCAATTCTGGAGGTTTGAAACAGATGGGTTCGCAAAATAATATGGTGAAGAGGGAAATAGCAGTTAGCTCAAATCAGGATCCGCTGCAGGTATCAAGAAGTAGCTTTAATGATCCTGAAAGCAAGATGGTTGAAACTTTTGAGTCAGCAAGTGGAAATGCTGGAACGAGTAGTTCTAAAGAGAGAATCTCAGAAATTCCAGTGCAGAGAATAGAATCCATCATACGTGAGCAGAGGTTAGAAACAGCATGGTTACAAGCAATGGAGAAAGGCACTCCTGGATCAATGAGTCGCCTGAAACCTGAGAGGAACCAAGTCCTGCCACAAGATGGTCTTTATCATAACAACCAACTAGAACCAATTAATTCAAGGGAACTGTTCTCCCAGCATTGGCATGATGATCTAAATGAGGAAATTAGAAGTCTGAAGATGATTGACGGAAAGGCTGTTCAGAAGGATCAAACCAGTAAAAAGGGCGACAGTTATCCCATTTCACCAAGTTTGTTGCATAATGGCATATATGGCAGTAATTTCAGCAAAGAGAGCAT : GGGTTATGAATCAGGATCTGGAGCTGGAGGTTGTTTCTGTTGGAACAACAGCAGACCCCAAAGAAGGGGCAAG : GTTAAACAAGGGACCCCTGTGAGACCTCCTAAAGGTGGACGGTTCTTATGGTTTGGGGAGTGTGCAAAACCAAGGAGAACAGAGAGTAGATTGAGAAGATAGCATTGAAGCTCCAGATTAAGAATGTTCATTTTCTTTTAGTTGGTCTACTGTATTTATTCCATCTGCTGGGGCCATTCTATTCTTTCATGGATATCAAGCTCATTAAAGGATTATGTAAAGTTGTTGCTCTGGGCTTCTGAAATTTCATTTAGTCCACTCAGTTCAATGAAATTAATAAAAGGTCATTTAGG</gDNA_template>
            <first_frame> D  L  I  A  L  N  A  D  G  S  L  R  D  A  E  T  M  L  D  Q  L  S  L  L  G  K  R  I  T  T  S  L  V  N  D  L  :  I  G  V  V  S  D  E  K  L  L  E  L  L  E  L  A  M  S  S  D  T  A  E  T  V  K  R  A  R  E  L  L  D  S  G  V  D  P  I  V  L  M  S  Q  L  A  T  L  I  M  D  I  I  A  G  T  H  P  I  L  D  A  K  Q  T  D  I  S  G  G  K  S   : L  N  E  T  E  L  D  R  L  K  H  A  L  K  L  L  S  E  A  E  K  Q  L  R  V  S  S  E  R  S  T  W  F  T  A  T  L  L  Q  L  G  S  A  T  S  L  D  R  T  H  S  G  S  S  H  R  L  S  S  K  T  T  E  E  D  P  S  S  T  S  R  E  A  I  S  L  R  Q  R  T  D  I  H  H  A  P  C  K  S  G  S  P  S  S  F  A  K  A  N  R  R  N  S  A  S  R  E  L  T  L  S  S  M  N  G  E  P  L  G  G  P  H  N  D  T  K  D  S  K  T  A  S  R  C  P  N  T  N  V  L  D  D  I  W  I  R  C  I  D  K  C  H  S  N  T  L  K  Q  L  L  H  T  C  G  T  L  L  S  I  S  E  V  E   : G  G  F  V  A  H  I  A  F  R  D  S  K  V  K  L  R  A  E  R  F  L  S  S  I  T  N  S  F  E  T  I  L  R  S  N  V  E  V  R  L  V  L  L  P  D  A  E  T  S  D  D  S  G  K  P  I  T  L  I  N  S  G  G  L  K  Q  M  G  S  Q  N  N  M  V  K  R  E  I  A  V  S  S  N  Q  D  P  L  Q  V  S  R  S  S  F  N  D  P  E  S  K  M  V  E  T  F  E  S  A  S  G  N  A  G  T  S  S  S  K  E  R  I  S  E  I  P  V  Q  R  I  E  S  I  I  R  E  Q  R  L  E  T  A  W  L  Q  A  M  E  K  G  T  P  G  S  M  S  R  L  K  P  E  R  N  Q  V  L  P  Q  D  G  L  Y  H  N  N  Q  L  E  P  I  N  S  R  E  L  F  S  Q  H  W  H  D  D  L  N  E  E  I  R  S  L  K  M  I  D  G  K  A  V  Q  K  D  Q  T  S  K  K  G  D  S  Y  P  I  S  P  S  L  L  H  N  G  I  Y  G  S  N  F  S  K  E  S  M :   G  Y  E  S  G  S  G  A  G  G  C  F  C  W  N  N  S  R  P  Q  R  R  G  K  :  V  K  Q  G  T  P  V  R  P  P  K  G  G  R  F  L  W  F  G  E  C  A  K  P  R  R  T  E  S  R  L  R  R  *  H  *  S  S  R  L  R  M  F  I  F  F  *  L  V  Y  C  I  Y  S  I  C  W  G  H  S  I  L  S  W  I  S  S  S  L  K  D  Y  V  K  L  L  L  W  A  S  E  I  S  F  S  P  L  S  S  M  K  L  I  K  G  H  L   </first_frame>
            <second_frame>  I  *  L  L  *  M  Q  M  D  H  F  E  M  Q  K  L  C  *  T  S  S  V  C  W  G  N  E  S  L  P  L  W  L  M  I  * :   L  V  W  F  Q  M  R  S  Y  W  N  F  *  S  *  P  C  H  Q  T  L  Q  K  Q  *  K  E  P  G  N  C  W  I  Q  V  L  I  Q  *  F  *  C  L  N  W  L  L  S  S  W  I  *  L  L  E  L  I  Q  Y  L  M  Q  S  K  L  I  S  L  A  V  K  V  :  *  T  R  Q  N  W  I  D  *  S  M  H  *  S  F  F  L  R  Q  R  N  N  *  G  F  Q  V  N  V  R  L  G  L  Q  Q  P  C  C  S  W  V  L  P  L  H  *  I  E  L  I  Q  E  A  V  T  G  *  V  L  R  Q  Q  R  K  I  L  L  V  H  L  E  K  L  Y  P  *  G  R  E  L  I  F  T  M  H  H  V  S  Q  V  L  P  H  L  L  R  K  P  T  V  E  T  Q  Q  V  E  N  *  H  F  H  Q  *  M  G  S  H  W  V  V  H  I  M  T  L  R  T  A  R  Q  H  L  G  A  P  T  Q  T  C  W  M  I  S  G  S  D  A  L  I  N  A  T  P  T  L  *  S  N  C  F  I  L  V  E  H  F  C  R  S  L  K  L  K  :  V  V  L  L  L  I  L  P  F  V  I  A  R  L  N  *  E  Q  R  G  F  L  A  V  S  R  I  H  L  K  L  F  *  G  A  M  *  R  L  D  L  F  C  Y  Q  M  R  R  H  L  M  T  V  E  S  Q  L  H  *  S  I  L  E  V  *  N  R  W  V  R  K  I  I  W  *  R  G  K  *  Q  L  A  Q  I  R  I  R  C  R  Y  Q  E  V  A  L  M  I  L  K  A  R  W  L  K  L  L  S  Q  Q  V  E  M  L  E  R  V  V  L  K  R  E  S  Q  K  F  Q  C  R  E  *  N  P  S  Y  V  S  R  G  *  K  Q  H  G  Y  K  Q  W  R  K  A  L  L  D  Q  *  V  A  *  N  L  R  G  T  K  S  C  H  K  M  V  F  I  I  T  T  N  *  N  Q  L  I  Q  G  N  C  S  P  S  I  G  M  M  I  *  M  R  K  L  E  V  *  R  *  L  T  E  R  L  F  R  R  I  K  P  V  K  R  A  T  V  I  P  F  H  Q  V  C  C  I  M  A  Y  M  A  V  I  S  A  K  R  A   : W  V  M  N  Q  D  L  E  L  E  V  V  S  V  G  T  T  A  D  P  K  E  G  A  R :   L  N  K  G  P  L  *  D  L  L  K  V  D  G  S  Y  G  L  G  S  V  Q  N  Q  G  E  Q  R  V  D  *  E  D  S  I  E  A  P  D  *  E  C  S  F  S  F  S  W  S  T  V  F  I  P  S  A  G  A  I  L  F  F  H  G  Y  Q  A  H  *  R  I  M  *  S  C  C  S  G  L  L  K  F  H  L  V  H  S  V  Q  *  N  *  *  K  V  I  *  </second_frame>
            <third_frame>   F  D  C  S  K  C  R  W  I  T  S  R  C  R  N  Y  V  R  P  A  Q  F  V  G  E  T  N  H  Y  L  F  G  *  *  S   : D  W  C  G  F  R  *  E  V  T  G  T  F  R  A  S  H  V  I  R  H  C  R  N  S  E  K  S  P  G  I  V  G  F  R  C  *  S  N  S  F  D  V  S  I  G  Y  S  H  H  G  Y  N  C  W  N  S  S  N  T  *  C  K  A  N  *  Y  L  W  R  *  K  F :   E  R  D  R  T  G  *  I  E  A  C  T  K  A  S  F  *  G  R  E  T  T  K  G  F  K  *  T  F  D  L  V  Y  S  N  P  A  A  V  G  F  C  H  F  T  R  S  N  S  F  R  K  Q  S  Q  A  E  F  *  D  N  R  G  R  S  F  *  Y  I  *  R  S  Y  I  P  E  A  E  N  *  Y  S  P  C  T  M  *  V  R  F  S  L  I  F  C  E  S  Q  P  S  K  L  S  K  *  R  I  D  T  F  I  N  E  W  G  A  I  G  W  S  T  *  *  H  *  G  Q  Q  D  S  I  *  V  P  Q  H  K  R  V  G  *  Y  L  D  Q  M  H  *  *  M  P  L  Q  H  F  E  A  I  A  S  Y  L  W  N  T  S  V  D  L  *  S  *  R :   W  F  C  C  S  Y  C  L  S  *  *  Q  G  *  I  E  S  R  E  V  S  *  Q  Y  H  E  F  I  *  N  Y  F  K  E  Q  C  R  G  *  T  C  S  A  T  R  C  G  D  I  *  *  Q  W  K  A  N  Y  I  D  Q  F  W  R  F  E  T  D  G  F  A  K  *  Y  G  E  E  G  N  S  S  *  L  K  S  G  S  A  A  G  I  K  K  *  L  *  *  S  *  K  Q  D  G  *  N  F  *  V  S  K  W  K  C  W  N  E  *  F  *  R  E  N  L  R  N  S  S  A  E  N  R  I  H  H  T  *  A  E  V  R  N  S  M  V  T  S  N  G  E  R  H  S  W  I  N  E  S  P  E  T  *  E  E  P  S  P  A  T  R  W  S  L  S  *  Q  P  T  R  T  N  *  F  K  G  T  V  L  P  A  L  A  *  *  S  K  *  G  N  *  K  S  E  D  D  *  R  K  G  C  S  E  G  S  N  Q  *  K  G  R  Q  L  S  H  F  T  K  F  V  A  *  W  H  I  W  Q  *  F  Q  Q  R  E  H  :  G  L  *  I  R  I  W  S  W  R  L  F  L  L  E  Q  Q  Q  T  P  K  K  G  Q   : G  *  T  R  D  P  C  E  T  S  *  R  W  T  V  L  M  V  W  G  V  C  K  T  K  E  N  R  E  *  I  E  K  I  A  L  K  L  Q  I  K  N  V  H  F  L  L  V  G  L  L  Y  L  F  H  L  L  G  P  F  Y  S  F  M  D  I  K  L  I  K  G  L  C  K  V  V  A  L  G  F  *  N  F  I  *  S  T  Q  F  N  E  I  N  K  R  S  F  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44943" stop="44836"/>
                    <exon start="44748" stop="44532"/>
                    <exon start="43978" stop="43460"/>
                    <exon start="42651" stop="41928"/>
                    <exon start="41320" stop="41248"/>
                    <exon start="41164" stop="41063"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1740</number_coding_nucleotides>
                  <number_encoded_amino_acids>580</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIALNADGSLRDAETMLDQLSLLGKRITTSLVNDLIGVVSDEKLLELLELAMSSDTAETVKRARELLDSGVDPIVLMSQLATLIMDIIAGTHPILDAKQTDISGGKSLNETELDRLKHALKLLSEAEKQLRVSSERSTWFTATLLQLGSATSLDRTHSGSSHRLSSKTTEEDPSSTSREAISLRQRTDIHHAPCKSGSPSSFAKANRRNSASRELTLSSMNGEPLGGPHNDTKDSKTASRCPNTNVLDDIWIRCIDKCHSNTLKQLLHTCGTLLSISEVEGGFVAHIAFRDSKVKLRAERFLSSITNSFETILRSNVEVRLVLLPDAETSDDSGKPITLINSGGLKQMGSQNNMVKREIAVSSNQDPLQVSRSSFNDPESKMVETFESASGNAGTSSSKERISEIPVQRIESIIREQRLETAWLQAMEKGTPGSMSRLKPERNQVLPQDGLYHNNQLEPINSRELFSQHWHDDLNEEIRSLKMIDGKAVQKDQTSKKGDSYPISPSLLHNGIYGSNFSKESMGYESGSGAGGCFCWNNSRPQRRGKVKQGTPVRPPKGGRFLWFGECAKPRRTESRLRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43978" e_stop="43721"/>
            <exon e_start="43624" e_stop="43460"/>
            <exon e_start="42651" e_stop="41928"/>
            <exon e_start="41320" e_stop="41248"/>
            <exon e_start="41164" e_stop="40872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.991" acc_prob="0.923" e_score="0.988"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.887" e_score="0.945"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="43978" e_stop="43721" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43720" i_stop="43625" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="43624" e_stop="43460" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.923">
            <gDNA_intron_boundary i_start="43459" i_stop="42652" i_length="808"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42651" e_stop="41928" e_length="724"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41927" i_stop="41321" i_length="607"/>
          </intron>
          <exon e_serial="4" e_score="0.945">
            <gDNA_exon_boundary e_start="41320" e_stop="41248" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.887">
            <gDNA_intron_boundary i_start="41247" i_stop="41165" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.943">
            <gDNA_exon_boundary e_start="41164" e_stop="40872" e_length="293"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43978" stop="43721"/>
              <exon start="43624" stop="43460"/>
              <exon start="42651" stop="42401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43978" stop="43721"/>
              <exon start="43624" stop="43460"/>
              <exon start="42651" stop="42470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43568" stop="43460"/>
              <exon start="42651" stop="41943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42283" stop="41928"/>
              <exon start="41320" stop="41248"/>
              <exon start="41164" stop="40872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433270" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42075" stop="41928"/>
              <exon start="41320" stop="41248"/>
              <exon start="41164" stop="40900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAACGAGACAGAACTGGATAGATTGAAGCATGCACTAAAGCTTCTTTCTGAGGCAGAGAAACAACTAAGGGTTTCAAGTGAACGTTCGACTTGGTTTACAGCAACCCTGCTGCAGTTGGGTTCTGCCACTTCACTAGATCGAACTCATTCAGGAAGCAGTCACAGGCTGAGTTCTAAGACAACAGAGGAAGATCCTTCTAGTACATCTAGAGAAGCTATATCCCTGAGGCAGAGAACTGATATTCACCATGCACCAT : GTGGTCCACATAATGACACTAAGGACAGCAAGACAGCATCTAGGTGCCCCAACACAAACGTGTTGGATGATATCTGGATCAGATGCATTGATAAATGCCACTCCAACACTTTGAAGCAATTGCTTCATACTTGTGGAACACTTCTGTCGATCTCTGAAGTTGAAG : GTGGTTTTGTTGCTCATATTGCCTTTCGTGATAGCAAGGTTAAATTGAGAGCAGAGAGGTTTCTTAGCAGTATCACGAATTCATTTGAAACTATTTTAAGGAGCAATGTAGAGGTTAGACTTGTTCTGCTACCAGATGCGGAGACATCTGATGACAGTGGAAAGCCAATTACATTGATCAATTCTGGAGGTTTGAAACAGATGGGTTCGCAAAATAATATGGTGAAGAGGGAAATAGCAGTTAGCTCAAATCAGGATCCGCTGCAGGTATCAAGAAGTAGCTTTAATGATCCTGAAAGCAAGATGGTTGAAACTTTTGAGTCAGCAAGTGGAAATGCTGGAACGAGTAGTTCTAAAGAGAGAATCTCAGAAATTCCAGTGCAGAGAATAGAATCCATCATACGTGAGCAGAGGTTAGAAACAGCATGGTTACAAGCAATGGAGAAAGGCACTCCTGGATCAATGAGTCGCCTGAAACCTGAGAGGAACCAAGTCCTGCCACAAGATGGTCTTTATCATAACAACCAACTAGAACCAATTAATTCAAGGGAACTGTTCTCCCAGCATTGGCATGATGATCTAAATGAGGAAATTAGAAGTCTGAAGATGATTGACGGAAAGGCTGTTCAGAAGGATCAAACCAGTAAAAAGGGCGACAGTTATCCCATTTCACCAAGTTTGTTGCATAATGGCATATATGGCAGTAATTTCAGCAAAGAGAGCAT : GGGTTATGAATCAGGATCTGGAGCTGGAGGTTGTTTCTGTTGGAACAACAGCAGACCCCAAAGAAGGGGCAAG : GTTAAACAAGGGACCCCTGTGAGACCTCCTAAAGGTGGACGGTTCTTATGGTTTGGGGAGTGTGCAAAACCAAGGAGAACAGAGAGTAGATTGAGAAGATAGCATTGAAGCTCCAGATTAAGAATGTTCATTTTCTTTTAGTTGGTCTACTGTATTTATTCCATCTGCTGGGGCCATTCTATTCTTTCATGGATATCAAGCTCATTAAAGGATTATGTAAAGTTGTTGCTCTGGGCTTCTGAAATTTCATTTAGTCCACTCAGTTCAATGAAATTAATAAAAGGTCATTTAGG</gDNA_template>
            <first_frame> *  T  R  Q  N  W  I  D  *  S  M  H  *  S  F  F  L  R  Q  R  N  N  *  G  F  Q  V  N  V  R  L  G  L  Q  Q  P  C  C  S  W  V  L  P  L  H  *  I  E  L  I  Q  E  A  V  T  G  *  V  L  R  Q  Q  R  K  I  L  L  V  H  L  E  K  L  Y  P  *  G  R  E  L  I  F  T  M  H  H  :  V  V  H  I  M  T  L  R  T  A  R  Q  H  L  G  A  P  T  Q  T  C  W  M  I  S  G  S  D  A  L  I  N  A  T  P  T  L  *  S  N  C  F  I  L  V  E  H  F  C  R  S  L  K  L  K  :  V  V  L  L  L  I  L  P  F  V  I  A  R  L  N  *  E  Q  R  G  F  L  A  V  S  R  I  H  L  K  L  F  *  G  A  M  *  R  L  D  L  F  C  Y  Q  M  R  R  H  L  M  T  V  E  S  Q  L  H  *  S  I  L  E  V  *  N  R  W  V  R  K  I  I  W  *  R  G  K  *  Q  L  A  Q  I  R  I  R  C  R  Y  Q  E  V  A  L  M  I  L  K  A  R  W  L  K  L  L  S  Q  Q  V  E  M  L  E  R  V  V  L  K  R  E  S  Q  K  F  Q  C  R  E  *  N  P  S  Y  V  S  R  G  *  K  Q  H  G  Y  K  Q  W  R  K  A  L  L  D  Q  *  V  A  *  N  L  R  G  T  K  S  C  H  K  M  V  F  I  I  T  T  N  *  N  Q  L  I  Q  G  N  C  S  P  S  I  G  M  M  I  *  M  R  K  L  E  V  *  R  *  L  T  E  R  L  F  R  R  I  K  P  V  K  R  A  T  V  I  P  F  H  Q  V  C  C  I  M  A  Y  M  A  V  I  S  A  K  R  A   : W  V  M  N  Q  D  L  E  L  E  V  V  S  V  G  T  T  A  D  P  K  E  G  A  R :   L  N  K  G  P  L  *  D  L  L  K  V  D  G  S  Y  G  L  G  S  V  Q  N  Q  G  E  Q  R  V  D  *  E  D  S  I  E  A  P  D  *  E  C  S  F  S  F  S  W  S  T  V  F  I  P  S  A  G  A  I  L  F  F  H  G  Y  Q  A  H  *  R  I  M  *  S  C  C  S  G  L  L  K  F  H  L  V  H  S  V  Q  *  N  *  *  K  V  I  *  </first_frame>
            <second_frame>  E  R  D  R  T  G  *  I  E  A  C  T  K  A  S  F  *  G  R  E  T  T  K  G  F  K  *  T  F  D  L  V  Y  S  N  P  A  A  V  G  F  C  H  F  T  R  S  N  S  F  R  K  Q  S  Q  A  E  F  *  D  N  R  G  R  S  F  *  Y  I  *  R  S  Y  I  P  E  A  E  N  *  Y  S  P  C  T  M :   W  S  T  *  *  H  *  G  Q  Q  D  S  I  *  V  P  Q  H  K  R  V  G  *  Y  L  D  Q  M  H  *  *  M  P  L  Q  H  F  E  A  I  A  S  Y  L  W  N  T  S  V  D  L  *  S  *  R :   W  F  C  C  S  Y  C  L  S  *  *  Q  G  *  I  E  S  R  E  V  S  *  Q  Y  H  E  F  I  *  N  Y  F  K  E  Q  C  R  G  *  T  C  S  A  T  R  C  G  D  I  *  *  Q  W  K  A  N  Y  I  D  Q  F  W  R  F  E  T  D  G  F  A  K  *  Y  G  E  E  G  N  S  S  *  L  K  S  G  S  A  A  G  I  K  K  *  L  *  *  S  *  K  Q  D  G  *  N  F  *  V  S  K  W  K  C  W  N  E  *  F  *  R  E  N  L  R  N  S  S  A  E  N  R  I  H  H  T  *  A  E  V  R  N  S  M  V  T  S  N  G  E  R  H  S  W  I  N  E  S  P  E  T  *  E  E  P  S  P  A  T  R  W  S  L  S  *  Q  P  T  R  T  N  *  F  K  G  T  V  L  P  A  L  A  *  *  S  K  *  G  N  *  K  S  E  D  D  *  R  K  G  C  S  E  G  S  N  Q  *  K  G  R  Q  L  S  H  F  T  K  F  V  A  *  W  H  I  W  Q  *  F  Q  Q  R  E  H  :  G  L  *  I  R  I  W  S  W  R  L  F  L  L  E  Q  Q  Q  T  P  K  K  G  Q   : G  *  T  R  D  P  C  E  T  S  *  R  W  T  V  L  M  V  W  G  V  C  K  T  K  E  N  R  E  *  I  E  K  I  A  L  K  L  Q  I  K  N  V  H  F  L  L  V  G  L  L  Y  L  F  H  L  L  G  P  F  Y  S  F  M  D  I  K  L  I  K  G  L  C  K  V  V  A  L  G  F  *  N  F  I  *  S  T  Q  F  N  E  I  N  K  R  S  F  R </second_frame>
            <third_frame>   N  E  T  E  L  D  R  L  K  H  A  L  K  L  L  S  E  A  E  K  Q  L  R  V  S  S  E  R  S  T  W  F  T  A  T  L  L  Q  L  G  S  A  T  S  L  D  R  T  H  S  G  S  S  H  R  L  S  S  K  T  T  E  E  D  P  S  S  T  S  R  E  A  I  S  L  R  Q  R  T  D  I  H  H  A  P   : C  G  P  H  N  D  T  K  D  S  K  T  A  S  R  C  P  N  T  N  V  L  D  D  I  W  I  R  C  I  D  K  C  H  S  N  T  L  K  Q  L  L  H  T  C  G  T  L  L  S  I  S  E  V  E   : G  G  F  V  A  H  I  A  F  R  D  S  K  V  K  L  R  A  E  R  F  L  S  S  I  T  N  S  F  E  T  I  L  R  S  N  V  E  V  R  L  V  L  L  P  D  A  E  T  S  D  D  S  G  K  P  I  T  L  I  N  S  G  G  L  K  Q  M  G  S  Q  N  N  M  V  K  R  E  I  A  V  S  S  N  Q  D  P  L  Q  V  S  R  S  S  F  N  D  P  E  S  K  M  V  E  T  F  E  S  A  S  G  N  A  G  T  S  S  S  K  E  R  I  S  E  I  P  V  Q  R  I  E  S  I  I  R  E  Q  R  L  E  T  A  W  L  Q  A  M  E  K  G  T  P  G  S  M  S  R  L  K  P  E  R  N  Q  V  L  P  Q  D  G  L  Y  H  N  N  Q  L  E  P  I  N  S  R  E  L  F  S  Q  H  W  H  D  D  L  N  E  E  I  R  S  L  K  M  I  D  G  K  A  V  Q  K  D  Q  T  S  K  K  G  D  S  Y  P  I  S  P  S  L  L  H  N  G  I  Y  G  S  N  F  S  K  E  S  M :   G  Y  E  S  G  S  G  A  G  G  C  F  C  W  N  N  S  R  P  Q  R  R  G  K  :  V  K  Q  G  T  P  V  R  P  P  K  G  G  R  F  L  W  F  G  E  C  A  K  P  R  R  T  E  S  R  L  R  R  *  H  *  S  S  R  L  R  M  F  I  F  F  *  L  V  Y  C  I  Y  S  I  C  W  G  H  S  I  L  S  W  I  S  S  S  L  K  D  Y  V  K  L  L  L  W  A  S  E  I  S  F  S  P  L  S  S  M  K  L  I  K  G  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43976" stop="43721"/>
                    <exon start="43624" stop="43460"/>
                    <exon start="42651" stop="41928"/>
                    <exon start="41320" stop="41248"/>
                    <exon start="41164" stop="41063"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1317</number_coding_nucleotides>
                  <number_encoded_amino_acids>439</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NETELDRLKHALKLLSEAEKQLRVSSERSTWFTATLLQLGSATSLDRTHSGSSHRLSSKTTEEDPSSTSREAISLRQRTDIHHAPCGPHNDTKDSKTASRCPNTNVLDDIWIRCIDKCHSNTLKQLLHTCGTLLSISEVEGGFVAHIAFRDSKVKLRAERFLSSITNSFETILRSNVEVRLVLLPDAETSDDSGKPITLINSGGLKQMGSQNNMVKREIAVSSNQDPLQVSRSSFNDPESKMVETFESASGNAGTSSSKERISEIPVQRIESIIREQRLETAWLQAMEKGTPGSMSRLKPERNQVLPQDGLYHNNQLEPINSRELFSQHWHDDLNEEIRSLKMIDGKAVQKDQTSKKGDSYPISPSLLHNGIYGSNFSKESMGYESGSGAGGCFCWNNSRPQRRGKVKQGTPVRPPKGGRFLWFGECAKPRRTESRLRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="54821" PGL_stop="52007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54821" e_stop="54649"/>
            <exon e_start="54235" e_stop="54101"/>
            <exon e_start="53898" e_stop="53620"/>
            <exon e_start="53003" e_stop="52863"/>
            <exon e_start="52425" e_stop="52007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="0.983"/>
          <exon-intron don_prob="0.834" acc_prob="0.986" e_score="0.985"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="0.978"/>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="0.986"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="54821" e_stop="54649" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="54648" i_stop="54236" i_length="413"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="54235" e_stop="54101" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.834" acc_prob="0.986">
            <gDNA_intron_boundary i_start="54100" i_stop="53899" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="53898" e_stop="53620" e_length="279"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53619" i_stop="53004" i_length="616"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="53003" e_stop="52863" e_length="141"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="52862" i_stop="52426" i_length="437"/>
          </intron>
          <exon e_serial="5" e_score="0.928">
            <gDNA_exon_boundary e_start="52425" e_stop="52007" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54821" stop="54649"/>
              <exon start="54235" stop="54101"/>
              <exon start="53898" stop="53620"/>
              <exon start="53003" stop="52947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53859" stop="53620"/>
              <exon start="53003" stop="52924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53735" stop="53620"/>
              <exon start="53003" stop="52863"/>
              <exon start="52425" stop="52007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTATCAGATAGCTAAGGTGTACAGAAGAGATAATCCATCTAAGGGTAGATATCGTGAATTTTACCAGTGTGATTTTGACATAGCTGGTCAATTTGAGAAGATGATGCCTGATTTTGAGGTCATAAAGATTTTGACCGAGTTGTTAGATGAGCTTGATATTGGAGAGTATGAG : GTAAAGCTTAATCACAGAAAGCTGCTTGATGGTATGTTGGCTATATGTGGGGTGCCACAAGAGAAGTTCAGAACCATTTGTTCAAGCATTGACAAGCTAGATAAACAATCCTTTGAGCAGATAAAAAAAGAAATG : GTGGATGAGAAAGGCTTAAGTAATGAGATATCAGACAGAATTGGTACATTTGTCAAATGGAGGGGACCTCCAGTGGAATTATTATCTAAGCTCAAGCAAGAACGCAGTTTTCTGGAGAACAATGAATCTTCACTTGCTTTGGATGAATTAGAGATTATGTTTAAAGCTCTGGAGAAGTCCAAGTGTATTGACAGAGTGGTTTTTGACTTGAGCCTTGCAAGAGGCCTTGATTACTACACAGGAGTCATATTTGAAGCAGTCTTCAAAGGAGCTGCTCAG : GTTGGTTCGATTGCTGCTGGTGGACGTTATGACAACCTGATAGGGATGTTTGGGACACGGCAGGTTCCTTCTGTTGGGATCAGTCTGGGAATAGAGAGAGTATTTGCAATCATGGAACAGCTTCAGAAAGACAAAAATCAG : GAAATTCGAGCCACTGAAACTCAAGTTCTCGTTAGCATTCTTGGTGATGACAGTGCTTTGGCTGCTGAGCTAGCTGGTGAATTGTGGAATGCTAAAGTGAAAGCAGAATTCATGATCCATAAAAAAGTGATGAAGCACATTGATCGGGCCAGAGATTCGAGGATCCCTTGGATGGTACTTGTTGGTGAACGCGAACTTAGTGAAGGAGTTGTAAAATTGAAGGATGTTGTTGCAGCTATTGACTATGAGATTCCCAGAGGTAAGCTCGTGGACGATCTATGCAAACGATTAGGCATGTAATATCTTAAGCTCTTTGTATTGGTAGATTGAATAATTTTTTAGCAAGATTCCATTTTTGGGGGGTTTAAAATCCACCATGTTGGTGGAGGGTTAGACATTGACCCTTGTCCATTAATCCA</gDNA_template>
            <first_frame> V  I  R  *  L  R  C  T  E  E  I  I  H  L  R  V  D  I  V  N  F  T  S  V  I  L  T  *  L  V  N  L  R  R  *  C  L  I  L  R  S  *  R  F  *  P  S  C  *  M  S  L  I  L  E  S  M  R :   *  S  L  I  T  E  S  C  L  M  V  C  W  L  Y  V  G  C  H  K  R  S  S  E  P  F  V  Q  A  L  T  S  *  I  N  N  P  L  S  R  *  K  K  K  W :   W  M  R  K  A  *  V  M  R  Y  Q  T  E  L  V  H  L  S  N  G  G  D  L  Q  W  N  Y  Y  L  S  S  S  K  N  A  V  F  W  R  T  M  N  L  H  L  L  W  M  N  *  R  L  C  L  K  L  W  R  S  P  S  V  L  T  E  W  F  L  T  *  A  L  Q  E  A  L  I  T  T  Q  E  S  Y  L  K  Q  S  S  K  E  L  L  R :   L  V  R  L  L  L  V  D  V  M  T  T  *  *  G  C  L  G  H  G  R  F  L  L  L  G  S  V  W  E  *  R  E  Y  L  Q  S  W  N  S  F  R  K  T  K  I  R :   K  F  E  P  L  K  L  K  F  S  L  A  F  L  V  M  T  V  L  W  L  L  S  *  L  V  N  C  G  M  L  K  *  K  Q  N  S  *  S  I  K  K  *  *  S  T  L  I  G  P  E  I  R  G  S  L  G  W  Y  L  L  V  N  A  N  L  V  K  E  L  *  N  *  R  M  L  L  Q  L  L  T  M  R  F  P  E  V  S  S  W  T  I  Y  A  N  D  *  A  C  N  I  L  S  S  L  Y  W  *  I  E  *  F  F  S  K  I  P  F  L  G  G  L  K  S  T  M  L  V  E  G  *  T  L  T  L  V  H  *  S  </first_frame>
            <second_frame>  L  S  D  S  *  G  V  Q  K  R  *  S  I  *  G  *  I  S  *  I  L  P  V  *  F  *  H  S  W  S  I  *  E  D  D  A  *  F  *  G  H  K  D  F  D  R  V  V  R  *  A  *  Y  W  R  V  *   : G  K  A  *  S  Q  K  A  A  *  W  Y  V  G  Y  M  W  G  A  T  R  E  V  Q  N  H  L  F  K  H  *  Q  A  R  *  T  I  L  *  A  D  K  K  R  N   : G  G  *  E  R  L  K  *  *  D  I  R  Q  N  W  Y  I  C  Q  M  E  G  T  S  S  G  I  I  I  *  A  Q  A  R  T  Q  F  S  G  E  Q  *  I  F  T  C  F  G  *  I  R  D  Y  V  *  S  S  G  E  V  Q  V  Y  *  Q  S  G  F  *  L  E  P  C  K  R  P  *  L  L  H  R  S  H  I  *  S  S  L  Q  R  S  C  S   : G  W  F  D  C  C  W  W  T  L  *  Q  P  D  R  D  V  W  D  T  A  G  S  F  C  W  D  Q  S  G  N  R  E  S  I  C  N  H  G  T  A  S  E  R  Q  K  S   : G  N  S  S  H  *  N  S  S  S  R  *  H  S  W  *  *  Q  C  F  G  C  *  A  S  W  *  I  V  E  C  *  S  E  S  R  I  H  D  P  *  K  S  D  E  A  H  *  S  G  Q  R  F  E  D  P  L  D  G  T  C  W  *  T  R  T  *  *  R  S  C  K  I  E  G  C  C  C  S  Y  *  L  *  D  S  Q  R  *  A  R  G  R  S  M  Q  T  I  R  H  V  I  S  *  A  L  C  I  G  R  L  N  N  F  L  A  R  F  H  F  W  G  V  *  N  P  P  C  W  W  R  V  R  H  *  P  L  S  I  N  P </second_frame>
            <third_frame>   Y  Q  I  A  K  V  Y  R  R  D  N  P  S  K  G  R  Y  R  E  F  Y  Q  C  D  F  D  I  A  G  Q  F  E  K  M  M  P  D  F  E  V  I  K  I  L  T  E  L  L  D  E  L  D  I  G  E  Y  E  :  V  K  L  N  H  R  K  L  L  D  G  M  L  A  I  C  G  V  P  Q  E  K  F  R  T  I  C  S  S  I  D  K  L  D  K  Q  S  F  E  Q  I  K  K  E  M  :  V  D  E  K  G  L  S  N  E  I  S  D  R  I  G  T  F  V  K  W  R  G  P  P  V  E  L  L  S  K  L  K  Q  E  R  S  F  L  E  N  N  E  S  S  L  A  L  D  E  L  E  I  M  F  K  A  L  E  K  S  K  C  I  D  R  V  V  F  D  L  S  L  A  R  G  L  D  Y  Y  T  G  V  I  F  E  A  V  F  K  G  A  A  Q  :  V  G  S  I  A  A  G  G  R  Y  D  N  L  I  G  M  F  G  T  R  Q  V  P  S  V  G  I  S  L  G  I  E  R  V  F  A  I  M  E  Q  L  Q  K  D  K  N  Q  :  E  I  R  A  T  E  T  Q  V  L  V  S  I  L  G  D  D  S  A  L  A  A  E  L  A  G  E  L  W  N  A  K  V  K  A  E  F  M  I  H  K  K  V  M  K  H  I  D  R  A  R  D  S  R  I  P  W  M  V  L  V  G  E  R  E  L  S  E  G  V  V  K  L  K  D  V  V  A  A  I  D  Y  E  I  P  R  G  K  L  V  D  D  L  C  K  R  L  G  M  *  Y  L  K  L  F  V  L  V  D  *  I  I  F  *  Q  D  S  I  F  G  G  F  K  I  H  H  V  G  G  G  L  D  I  D  P  C  P  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54819" stop="54649"/>
                    <exon start="54235" stop="54101"/>
                    <exon start="53898" stop="53620"/>
                    <exon start="53003" stop="52863"/>
                    <exon start="52425" stop="52126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQIAKVYRRDNPSKGRYREFYQCDFDIAGQFEKMMPDFEVIKILTELLDELDIGEYEVKLNHRKLLDGMLAICGVPQEKFRTICSSIDKLDKQSFEQIKKEMVDEKGLSNEISDRIGTFVKWRGPPVELLSKLKQERSFLENNESSLALDELEIMFKALEKSKCIDRVVFDLSLARGLDYYTGVIFEAVFKGAAQVGSIAAGGRYDNLIGMFGTRQVPSVGISLGIERVFAIMEQLQKDKNQEIRATETQVLVSILGDDSALAAELAGELWNAKVKAEFMIHKKVMKHIDRARDSRIPWMVLVGERELSEGVVKLKDVVAAIDYEIPRGKLVDDLCKRLGM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54235" e_stop="54101"/>
            <exon e_start="53898" e_stop="53620"/>
            <exon e_start="53003" e_stop="52967"/>
            <exon e_start="52411" e_stop="52282"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.834" acc_prob="0.986" e_score="0.985"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="0.982"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.973"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="54235" e_stop="54101" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.834" acc_prob="0.986">
            <gDNA_intron_boundary i_start="54100" i_stop="53899" i_length="202"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="53898" e_stop="53620" e_length="279"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53619" i_stop="53004" i_length="616"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="53003" e_stop="52967" e_length="37"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52966" i_stop="52412" i_length="555"/>
          </intron>
          <exon e_serial="4" e_score="0.954">
            <gDNA_exon_boundary e_start="52411" e_stop="52282" e_length="130"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54235" stop="54101"/>
              <exon start="53898" stop="53620"/>
              <exon start="53003" stop="52967"/>
              <exon start="52411" stop="52282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486397" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAAAGCTTAATCACAGAAAGCTGCTTGATGGTATGTTGGCTATATGTGGGGTGCCACAAGAGAAGTTCAGAACCATTTGTTCAAGCATTGACAAGCTAGATAAACAATCCTTTGAGCAGATAAAAAAAGAAATG : GTGGATGAGAAAGGCTTAAGTAATGAGATATCAGACAGAATTGGTACATTTGTCAAATGGAGGGGACCTCCAGTGGAATTATTATCTAAGCTCAAGCAAGAACGCAGTTTTCTGGAGAACAATGAATCTTCACTTGCTTTGGATGAATTAGAGATTATGTTTAAAGCTCTGGAGAAGTCCAAGTGTATTGACAGAGTGGTTTTTGACTTGAGCCTTGCAAGAGGCCTTGATTACTACACAGGAGTCATATTTGAAGCAGTCTTCAAAGGAGCTGCTCAG : GTTGGTTCGATTGCTGCTGGTGGACGTTATGACAACC : TGAAACTCAAGTTCTCGTTAGCATTCTTGGTGATGACAGTGCTTTGGCTGCTGAGCTAGCTGGTGAATTGTGGAATGCTAAAGTGAAAGCAGAATTCATGATCCATAAAAAAGTGATGAAGCACATTGAT</gDNA_template>
            <first_frame> V  K  L  N  H  R  K  L  L  D  G  M  L  A  I  C  G  V  P  Q  E  K  F  R  T  I  C  S  S  I  D  K  L  D  K  Q  S  F  E  Q  I  K  K  E  M  :  V  D  E  K  G  L  S  N  E  I  S  D  R  I  G  T  F  V  K  W  R  G  P  P  V  E  L  L  S  K  L  K  Q  E  R  S  F  L  E  N  N  E  S  S  L  A  L  D  E  L  E  I  M  F  K  A  L  E  K  S  K  C  I  D  R  V  V  F  D  L  S  L  A  R  G  L  D  Y  Y  T  G  V  I  F  E  A  V  F  K  G  A  A  Q  :  V  G  S  I  A  A  G  G  R  Y  D  N   : L  K  L  K  F  S  L  A  F  L  V  M  T  V  L  W  L  L  S  *  L  V  N  C  G  M  L  K  *  K  Q  N  S  *  S  I  K  K  *  *  S  T  L   </first_frame>
            <second_frame>  *  S  L  I  T  E  S  C  L  M  V  C  W  L  Y  V  G  C  H  K  R  S  S  E  P  F  V  Q  A  L  T  S  *  I  N  N  P  L  S  R  *  K  K  K  W :   W  M  R  K  A  *  V  M  R  Y  Q  T  E  L  V  H  L  S  N  G  G  D  L  Q  W  N  Y  Y  L  S  S  S  K  N  A  V  F  W  R  T  M  N  L  H  L  L  W  M  N  *  R  L  C  L  K  L  W  R  S  P  S  V  L  T  E  W  F  L  T  *  A  L  Q  E  A  L  I  T  T  Q  E  S  Y  L  K  Q  S  S  K  E  L  L  R :   L  V  R  L  L  L  V  D  V  M  T  T  :  *  N  S  S  S  R  *  H  S  W  *  *  Q  C  F  G  C  *  A  S  W  *  I  V  E  C  *  S  E  S  R  I  H  D  P  *  K  S  D  E  A  H  *  </second_frame>
            <third_frame>   K  A  *  S  Q  K  A  A  *  W  Y  V  G  Y  M  W  G  A  T  R  E  V  Q  N  H  L  F  K  H  *  Q  A  R  *  T  I  L  *  A  D  K  K  R  N   : G  G  *  E  R  L  K  *  *  D  I  R  Q  N  W  Y  I  C  Q  M  E  G  T  S  S  G  I  I  I  *  A  Q  A  R  T  Q  F  S  G  E  Q  *  I  F  T  C  F  G  *  I  R  D  Y  V  *  S  S  G  E  V  Q  V  Y  *  Q  S  G  F  *  L  E  P  C  K  R  P  *  L  L  H  R  S  H  I  *  S  S  L  Q  R  S  C  S   : G  W  F  D  C  C  W  W  T  L  *  Q  P :   E  T  Q  V  L  V  S  I  L  G  D  D  S  A  L  A  A  E  L  A  G  E  L  W  N  A  K  V  K  A  E  F  M  I  H  K  K  V  M  K  H  I  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54235" stop="54101"/>
                    <exon start="53898" stop="53620"/>
                    <exon start="53003" stop="52967"/>
                    <exon start="52411" stop="52353"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKLNHRKLLDGMLAICGVPQEKFRTICSSIDKLDKQSFEQIKKEMVDEKGLSNEISDRIGTFVKWRGPPVELLSKLKQERSFLENNESSLALDELEIMFKALEKSKCIDRVVFDLSLARGLDYYTGVIFEAVFKGAAQVGSIAAGGRYDNLKLKFSLAFLVMTVLWLLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="68219" PGL_stop="62026"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68219" e_stop="67709"/>
            <exon e_start="67569" e_stop="67537"/>
            <exon e_start="65714" e_stop="65486"/>
            <exon e_start="62874" e_stop="62754"/>
            <exon e_start="62661" e_stop="62189"/>
            <exon e_start="62034" e_stop="62026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.961"/>
          <exon-intron don_prob="0.490" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.663" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.089" e_score="0.996"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="68219" e_stop="67709" e_length="511"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67708" i_stop="67570" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67569" e_stop="67537" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.490" acc_prob="0.960">
            <gDNA_intron_boundary i_start="67536" i_stop="65715" i_length="1822"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65714" e_stop="65486" e_length="229"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.994">
            <gDNA_intron_boundary i_start="65485" i_stop="62875" i_length="2611"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62874" e_stop="62754" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.663">
            <gDNA_intron_boundary i_start="62753" i_stop="62662" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="62661" e_stop="62189" e_length="473"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.089">
            <gDNA_intron_boundary i_start="62188" i_stop="62035" i_length="154"/>
          </intron>
          <exon e_serial="6" e_score="0.778">
            <gDNA_exon_boundary e_start="62034" e_stop="62026" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68219" stop="67709"/>
              <exon start="67569" stop="67537"/>
              <exon start="65714" stop="65499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68083" stop="67709"/>
              <exon start="67569" stop="67537"/>
              <exon start="65714" stop="65486"/>
              <exon start="62874" stop="62796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68065" stop="67709"/>
              <exon start="67569" stop="67537"/>
              <exon start="65714" stop="65625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68052" stop="67709"/>
              <exon start="67569" stop="67537"/>
              <exon start="65714" stop="65486"/>
              <exon start="62874" stop="62754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68027" stop="67709"/>
              <exon start="67569" stop="67537"/>
              <exon start="65714" stop="65486"/>
              <exon start="62874" stop="62754"/>
              <exon start="62661" stop="62591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65707" stop="65486"/>
              <exon start="62874" stop="62754"/>
              <exon start="62661" stop="62362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65706" stop="65486"/>
              <exon start="62874" stop="62754"/>
              <exon start="62661" stop="62444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65597" stop="65486"/>
              <exon start="62874" stop="62754"/>
              <exon start="62661" stop="62189"/>
              <exon start="62034" stop="62026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62806" stop="62754"/>
              <exon start="62661" stop="62265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413482" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62601" stop="62250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62579" stop="62202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62579" stop="62202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62569" stop="62193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62549" stop="62193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62544" stop="62193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTCTCTGCCACAATTTTTTTTTTTCATAATTTTTGAAAGAACCAATAGATCCAAGTACTCGTACACTAGTGCTACATGTATCTATTTACCAAAAAAGAAACTCAAATAAATGCTGCTACTAAAACCCTTTCCCCACCACCCCACTTTCCTCTTTCTTCATGCTCTTCTCTCTCTCTCTCTATATATCCGTTTCTTACAATTTCTCTACTTGCTTCTCACAATTTCTCATGAAAATTTGAGCTTTTCTCTTTATGAATCTTCATTTTTCACAGCACATAGCAAGCTATTTTTAAAGTTTTGGGCAACATGAAGAGGAAACCCTAGTTCTTTGGGGAAAAAACCCTAATTTTCTTGTTTTTTTTCAAAGACTCGATTTTTTTCTTGTGGGGTTGTTAAAAATTGAGTGAAGAGAAGGATAATATGGAAAATACGGTACCTAGGACTGTAGAAGAAGTATTCAACGATTTCAAAGGTCGTAGAGCTGGTTTAATTAAAGCACTAACTACAG : ATGTCGAGAAGTTCTATCAGTCGTGTGATCCTG : AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCTGTTGAGGAGGTGCCTCCAGAACTTCCGGAGCCAGCATTAGGCATAAACTTTGCACGTGATGGAATGCAAGAGAAAGACTGGTTATCACTTGTTGCTGTTCATAGTGATTCATGGCTGCTTTCTGTTGCATTCTACTTTGGCGCACGGTTTGGGTTTGGCAAGAGTGAAAG : GAAGAGGCTTTTCCAAATGACAAATGATCTCCCAACAGTGTTTGAGGTTGTTACTGGAGCTGCTAAGCAGGCACGCGATGCCGCTCACAACAATAGCAGCAAAAGCAAATCAAGTGGAAAG : CCTCGACAGCCAGAGCCCCAGCCCAAGGAAGTAAAGGTGTCTCCACCTACAATGGAGGATGAAAGTGGGGAGGAGGAGGAAGAAGAAGAAGAAGAACAAGGGGCAACTCTCTGTGGAGCCTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGTGAGAGATGGTTCCATGGCAAATGTGTGAAGATTACCCCAGCAAAAGCTGAGCATATCAAGCAGTACAAGTGTCCCAGCTGCAGTAGCAAGAGAGCTAGAGTTTAAAATTTGTGGGACTTTTAGATCAACATCAATTAAGTGGAGATGTTGGAAGGTCTAGGACTTTTAGCTCAGTTATCAAATGTAAGCTATGTCAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTCATGAACATTTGCTTTCTGTTATCTTGCTTTCGGATTGTGTTTTAGATGAAATTTGTGCCTGTTATCA : AAAATCAAA</gDNA_template>
            <first_frame> S  L  S  A  T  I  F  F  F  H  N  F  *  K  N  Q  *  I  Q  V  L  V  H  *  C  Y  M  Y  L  F  T  K  K  E  T  Q  I  N  A  A  T  K  T  L  S  P  P  P  H  F  P  L  S  S  C  S  S  L  S  L  S  I  Y  P  F  L  T  I  S  L  L  A  S  H  N  F  S  *  K  F  E  L  F  S  L  *  I  F  I  F  H  S  T  *  Q  A  I  F  K  V  L  G  N  M  K  R  K  P  *  F  F  G  E  K  T  L  I  F  L  F  F  F  K  D  S  I  F  F  L  W  G  C  *  K  L  S  E  E  K  D  N  M  E  N  T  V  P  R  T  V  E  E  V  F  N  D  F  K  G  R  R  A  G  L  I  K  A  L  T  T   : D  V  E  K  F  Y  Q  S  C  D  P   : E  K  E  N  L  C  L  Y  G  L  P  N  E  T  W  E  V  N  L  P  V  E  E  V  P  P  E  L  P  E  P  A  L  G  I  N  F  A  R  D  G  M  Q  E  K  D  W  L  S  L  V  A  V  H  S  D  S  W  L  L  S  V  A  F  Y  F  G  A  R  F  G  F  G  K  S  E  R :   K  R  L  F  Q  M  T  N  D  L  P  T  V  F  E  V  V  T  G  A  A  K  Q  A  R  D  A  A  H  N  N  S  S  K  S  K  S  S  G  K  :  P  R  Q  P  E  P  Q  P  K  E  V  K  V  S  P  P  T  M  E  D  E  S  G  E  E  E  E  E  E  E  E  E  Q  G  A  T  L  C  G  A  C  G  D  N  Y  A  T  D  E  F  W  I  C  C  D  I  C  E  R  W  F  H  G  K  C  V  K  I  T  P  A  K  A  E  H  I  K  Q  Y  K  C  P  S  C  S  S  K  R  A  R  V  *  N  L  W  D  F  *  I  N  I  N  *  V  E  M  L  E  G  L  G  L  L  A  Q  L  S  N  V  S  Y  V  K  V  K  C  L  L  M  E  L  G  C  P  F  H  E  H  L  L  S  V  I  L  L  S  D  C  V  L  D  E  I  C  A  C  Y  Q :   K  S   </first_frame>
            <second_frame>  L  S  L  P  Q  F  F  F  F  I  I  F  E  R  T  N  R  S  K  Y  S  Y  T  S  A  T  C  I  Y  L  P  K  K  K  L  K  *  M  L  L  L  K  P  F  P  H  H  P  T  F  L  F  L  H  A  L  L  S  L  S  L  Y  I  R  F  L  Q  F  L  Y  L  L  L  T  I  S  H  E  N  L  S  F  S  L  Y  E  S  S  F  F  T  A  H  S  K  L  F  L  K  F  W  A  T  *  R  G  N  P  S  S  L  G  K  K  P  *  F  S  C  F  F  S  K  T  R  F  F  S  C  G  V  V  K  N  *  V  K  R  R  I  I  W  K  I  R  Y  L  G  L  *  K  K  Y  S  T  I  S  K  V  V  E  L  V  *  L  K  H  *  L  Q  :  M  S  R  S  S  I  S  R  V  I  L  :  K  R  R  T  C  V  S  M  G  F  L  M  K  H  G  K  *  T  S  L  L  R  R  C  L  Q  N  F  R  S  Q  H  *  A  *  T  L  H  V  M  E  C  K  R  K  T  G  Y  H  L  L  L  F  I  V  I  H  G  C  F  L  L  H  S  T  L  A  H  G  L  G  L  A  R  V  K   : G  R  G  F  S  K  *  Q  M  I  S  Q  Q  C  L  R  L  L  L  E  L  L  S  R  H  A  M  P  L  T  T  I  A  A  K  A  N  Q  V  E  S :   L  D  S  Q  S  P  S  P  R  K  *  R  C  L  H  L  Q  W  R  M  K  V  G  R  R  R  K  K  K  K  K  N  K  G  Q  L  S  V  E  P  V  V  I  I  M  R  L  M  N  S  G  F  A  V  I  F  V  R  D  G  S  M  A  N  V  *  R  L  P  Q  Q  K  L  S  I  S  S  S  T  S  V  P  A  A  V  A  R  E  L  E  F  K  I  C  G  T  F  R  S  T  S  I  K  W  R  C  W  K  V  *  D  F  *  L  S  Y  Q  M  *  A  M  S  K  L  N  V  C  *  W  N  W  D  V  H  F  M  N  I  C  F  L  L  S  C  F  R  I  V  F  *  M  K  F  V  P  V  I   : K  N  Q  </second_frame>
            <third_frame>   S  L  C  H  N  F  F  F  S  *  F  L  K  E  P  I  D  P  S  T  R  T  L  V  L  H  V  S  I  Y  Q  K  R  N  S  N  K  C  C  Y  *  N  P  F  P  T  T  P  L  S  S  F  F  M  L  F  S  L  S  L  Y  I  S  V  S  Y  N  F  S  T  C  F  S  Q  F  L  M  K  I  *  A  F  L  F  M  N  L  H  F  S  Q  H  I  A  S  Y  F  *  S  F  G  Q  H  E  E  E  T  L  V  L  W  G  K  N  P  N  F  L  V  F  F  Q  R  L  D  F  F  L  V  G  L  L  K  I  E  *  R  E  G  *  Y  G  K  Y  G  T  *  D  C  R  R  S  I  Q  R  F  Q  R  S  *  S  W  F  N  *  S  T  N  Y  R :   C  R  E  V  L  S  V  V  *  S  * :   K  G  E  L  V  S  L  W  A  S  *  *  N  M  G  S  K  P  P  C  *  G  G  A  S  R  T  S  G  A  S  I  R  H  K  L  C  T  *  W  N  A  R  E  R  L  V  I  T  C  C  C  S  *  *  F  M  A  A  F  C  C  I  L  L  W  R  T  V  W  V  W  Q  E  *  K  :  E  E  A  F  P  N  D  K  *  S  P  N  S  V  *  G  C  Y  W  S  C  *  A  G  T  R  C  R  S  Q  Q  *  Q  Q  K  Q  I  K  W  K   : A  S  T  A  R  A  P  A  Q  G  S  K  G  V  S  T  Y  N  G  G  *  K  W  G  G  G  G  R  R  R  R  R  T  R  G  N  S  L  W  S  L  W  *  *  L  C  D  *  *  I  L  D  L  L  *  Y  L  *  E  M  V  P  W  Q  M  C  E  D  Y  P  S  K  S  *  A  Y  Q  A  V  Q  V  S  Q  L  Q  *  Q  E  S  *  S  L  K  F  V  G  L  L  D  Q  H  Q  L  S  G  D  V  G  R  S  R  T  F  S  S  V  I  K  C  K  L  C  Q  S  *  M  F  A  D  G  I  G  M  S  I  S  *  T  F  A  F  C  Y  L  A  F  G  L  C  F  R  *  N  L  C  L  L  S  :  K  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67820" stop="67709"/>
                    <exon start="67569" stop="67537"/>
                    <exon start="65714" stop="65486"/>
                    <exon start="62874" stop="62754"/>
                    <exon start="62661" stop="62386"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLSEEKDNMENTVPRTVEEVFNDFKGRRAGLIKALTTDVEKFYQSCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFGKSERKRLFQMTNDLPTVFEVVTGAAKQARDAAHNNSSKSKSSGKPRQPEPQPKEVKVSPPTMEDESGEEEEEEEEEQGATLCGACGDNYATDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSSKRARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68107" stop="67907"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLLLKPFPHHPTFLFLHALLSLSLYIRFLQFLYLLLTISHENLSFSLYESSFFTAHSKLFLKFWAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="62201" PGL_stop="62579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62201" e_stop="62579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="62201" e_stop="62579" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62201" stop="62579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTTCATCTAAAACACAATCCGAAAGCAAGATAACAGAAAGCAAATGTTCATGAAATGGACATCCCAATTCCATCAGCAAACATTTAACTTTGACATAGCTTACATTTGATAACTGAGCTAAAAGTCCTAGACCTTCCAACATCTCCACTTAATTGATGTTGATCTAAAAGTCCCACAAATTTTAAACTCTAGCTCTCTTGCTACTGCAGCTGGGACACTTGTACTGCTTGATATGCTCAGCTTTTGCTGGGGTAATCTTCACACATTTGCCATGGAACCATCTCTCACAAATATCACAGCAAATCCAGAATTCATCAGTCGCATAATTATCACCACAGGCTCCACAGAGAGTTGCCCCTTGTTCTTCTTCTTCTT</gDNA_template>
            <first_frame> Q  I  S  S  K  T  Q  S  E  S  K  I  T  E  S  K  C  S  *  N  G  H  P  N  S  I  S  K  H  L  T  L  T  *  L  T  F  D  N  *  A  K  S  P  R  P  S  N  I  S  T  *  L  M  L  I  *  K  S  H  K  F  *  T  L  A  L  L  L  L  Q  L  G  H  L  Y  C  L  I  C  S  A  F  A  G  V  I  F  T  H  L  P  W  N  H  L  S  Q  I  S  Q  Q  I  Q  N  S  S  V  A  *  L  S  P  Q  A  P  Q  R  V  A  P  C  S  S  S  S  </first_frame>
            <second_frame>  K  F  H  L  K  H  N  P  K  A  R  *  Q  K  A  N  V  H  E  M  D  I  P  I  P  S  A  N  I  *  L  *  H  S  L  H  L  I  T  E  L  K  V  L  D  L  P  T  S  P  L  N  *  C  *  S  K  S  P  T  N  F  K  L  *  L  S  C  Y  C  S  W  D  T  C  T  A  *  Y  A  Q  L  L  L  G  *  S  S  H  I  C  H  G  T  I  S  H  K  Y  H  S  K  S  R  I  H  Q  S  H  N  Y  H  H  R  L  H  R  E  L  P  L  V  L  L  L  L </second_frame>
            <third_frame>   N  F  I  *  N  T  I  R  K  Q  D  N  R  K  Q  M  F  M  K  W  T  S  Q  F  H  Q  Q  T  F  N  F  D  I  A  Y  I  *  *  L  S  *  K  S  *  T  F  Q  H  L  H  L  I  D  V  D  L  K  V  P  Q  I  L  N  S  S  S  L  A  T  A  A  G  T  L  V  L  L  D  M  L  S  F  C  W  G  N  L  H  T  F  A  M  E  P  S  L  T  N  I  T  A  N  P  E  F  I  S  R  I  I  I  T  T  G  S  T  E  S  C  P  L  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62335" stop="62577"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFQHLHLIDVDLKVPQILNSSSLATAAGTLVLLDMLSFCWGNLHTFAMEPSLTNITANPEFISRIIITTGSTESCPLFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="74976" PGL_stop="69554"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74976" e_stop="74605"/>
            <exon e_start="74474" e_stop="74442"/>
            <exon e_start="72537" e_stop="72309"/>
            <exon e_start="70275" e_stop="70155"/>
            <exon e_start="70054" e_stop="69554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="0.995"/>
          <exon-intron don_prob="0.932" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="74976" e_stop="74605" e_length="372"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74474" e_stop="74442" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.932" acc_prob="0.981">
            <gDNA_intron_boundary i_start="74441" i_stop="72538" i_length="1904"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72537" e_stop="72309" e_length="229"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="72308" i_stop="70276" i_length="2033"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70275" e_stop="70155" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70154" i_stop="70055" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="70054" e_stop="69554" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74976" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72309"/>
              <exon start="70275" stop="70155"/>
              <exon start="70054" stop="69608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74975" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74955" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74953" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72309"/>
              <exon start="70275" stop="70155"/>
              <exon start="70054" stop="70046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74951" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72309"/>
              <exon start="70275" stop="70155"/>
              <exon start="70054" stop="70044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74951" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72309"/>
              <exon start="70275" stop="70246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74951" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74951" stop="74605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74945" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74931" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74930" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72309"/>
              <exon start="70275" stop="70155"/>
              <exon start="70054" stop="70030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74926" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72309"/>
              <exon start="70275" stop="70219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74912" stop="74609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74899" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72309"/>
              <exon start="70275" stop="70155"/>
              <exon start="70054" stop="70034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74899" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72309"/>
              <exon start="70275" stop="70163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74889" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74815" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72537" stop="72309"/>
              <exon start="70275" stop="70246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72361" stop="72309"/>
              <exon start="70275" stop="70155"/>
              <exon start="70054" stop="69616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398429" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70268" stop="70155"/>
              <exon start="70054" stop="69617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201140" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70051" stop="69563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70031" stop="69579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70024" stop="69608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70024" stop="69608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69981" stop="69608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69957" stop="69608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69950" stop="69554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69838" stop="69575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCAAAAACCCTTTCCCTCTCTTCCCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG : ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG : AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAG : GAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAG : CCTCGGCAGCCAGAGTCCCAACTCAAGGCAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTTATCATCTTGTGTTTGAAGATCCATTTTCACTTTTTACTTGTGTATTTATTATGA</gDNA_template>
            <first_frame> Y  Q  K  P  F  P  S  L  P  A  V  C  S  L  S  L  S  T  I  S  A  T  L  L  L  T  I  S  K  L  F  P  Y  Q  I  F  I  F  T  A  H  S  K  L  I  F  K  F  W  A  T  *  S  G  K  F  S  S  W  G  E  T  L  F  Y  F  N  P  L  L  V  F  F  L  F  Q  R  L  N  F  F  S  C  G  F  V  R  N  C  V  *  T  R  L  L  W  K  I  R  Y  P  G  L  *  K  K  Y  S  A  I  S  K  V  V  E  L  L  *  L  K  H  L  P  Q  :  M  L  R  S  F  I  S  S  V  I  L  :  K  R  R  T  C  V  S  M  G  F  L  M  K  H  G  K  *  T  S  R  W  K  R  C  L  Q  N  F  L  N  Q  H  W  A  *  I  L  H  V  M  E  C  K  K  K  T  G  Y  H  L  L  L  F  T  V  I  R  G  C  F  L  L  H  F  T  L  A  Q  G  L  G  S  A  R  V  I   : G  R  G  F  S  K  *  *  M  I  S  Q  Q  C  L  K  L  L  L  E  L  L  N  K  H  V  M  L  L  T  T  I  A  T  K  A  N  Q  V  E  S :   L  G  S  Q  S  P  N  S  R  Q  *  R  C  L  H  L  K  W  R  T  T  V  V  R  R  K  K  K  K  K  R  M  N  K  A  Q  L  C  V  E  L  V  V  I  I  M  R  L  M  N  S  G  F  A  V  I  F  A  R  D  G  S  M  E  N  V  *  R  L  L  Q  L  K  L  S  I  S  N  S  T  S  V  L  V  A  V  A  R  E  L  K  S  K  N  C  G  K  D  N  *  V  V  M  L  E  G  V  G  V  L  A  Q  L  S  N  V  K  S  *  M  F  A  D  G  I  G  M  S  I  C  F  L  L  S  C  F  R  I  A  F  *  I  L  K  K  L  C  L  L  S  S  C  V  *  R  S  I  F  T  F  Y  L  C  I  Y  Y   </first_frame>
            <second_frame>  T  K  N  P  F  P  L  F  P  L  F  V  L  F  L  S  L  Q  S  L  P  L  Y  F  L  Q  F  L  S  F  F  L  I  K  S  S  F  S  L  H  I  A  N  *  F  S  N  F  G  Q  H  E  V  E  S  L  V  L  G  G  K  P  Y  F  I  S  T  H  F  L  F  F  F  F  S  K  D  S  I  F  F  L  V  D  L  L  E  I  A  C  R  Q  G  Y  Y  G  K  F  G  T  Q  D  C  R  R  S  I  Q  R  F  Q  K  S  *  S  C  F  D  *  S  T  Y  H  R :   C  *  E  V  L  S  A  V  *  S  * :   K  G  E  L  V  S  L  W  A  S  *  *  N  M  G  S  K  P  P  G  G  R  G  A  S  R  T  S  *  T  S  I  G  H  K  F  C  T  *  W  N  A  R  K  R  L  V  I  T  C  C  C  S  Q  *  F  V  A  A  F  C  C  I  L  L  W  R  K  V  W  V  R  Q  E  *  *  :  E  E  A  F  P  N  D  K  *  S  P  N  S  V  *  S  C  Y  W  S  C  *  T  N  T  *  C  S  S  Q  Q  *  Q  Q  K  Q  I  K  W  K   : A  S  A  A  R  V  P  T  Q  G  S  K  G  V  S  T  *  N  G  E  R  Q  W  *  G  G  R  R  R  R  R  G  *  T  R  R  N  S  V  W  S  L  W  *  *  L  C  D  *  *  I  L  D  L  L  *  Y  L  R  E  M  V  P  W  K  M  C  E  D  Y  S  S  *  S  *  A  Y  Q  T  V  Q  V  S  *  L  Q  *  Q  E  S  *  S  L  K  I  A  A  R  T  I  K  W  *  C  W  K  V  *  E  F  *  L  S  Y  Q  M  S  K  V  K  C  L  L  M  E  L  G  C  P  F  A  F  C  Y  L  A  F  G  L  R  F  R  F  *  R  N  C  A  C  Y  H  L  V  F  E  D  P  F  S  L  F  T  C  V  F  I  M  </second_frame>
            <third_frame>   P  K  T  L  S  L  S  S  R  C  L  F  S  F  S  L  Y  N  L  C  H  F  T  S  Y  N  F  *  A  F  S  L  S  N  L  H  F  H  C  T  *  Q  T  N  F  Q  I  L  G  N  M  K  W  K  V  *  F  L  G  G  N  P  I  L  F  Q  P  T  S  C  F  F  S  F  P  K  T  Q  F  F  F  L  W  I  C  *  K  L  R  V  D  K  V  I  M  E  N  S  V  P  R  T  V  E  E  V  F  S  D  F  K  S  R  R  A  A  L  I  K  A  L  T  T   : D  V  E  K  F  Y  Q  Q  C  D  P   : E  K  E  N  L  C  L  Y  G  L  P  N  E  T  W  E  V  N  L  P  V  E  E  V  P  P  E  L  P  E  P  A  L  G  I  N  F  A  R  D  G  M  Q  E  K  D  W  L  S  L  V  A  V  H  S  D  S  W  L  L  S  V  A  F  Y  F  G  A  R  F  G  F  G  K  S  D  R :   K  R  L  F  Q  M  I  N  D  L  P  T  V  F  E  V  V  T  G  A  A  K  Q  T  R  D  A  P  H  N  N  S  N  K  S  K  S  S  G  K  :  P  R  Q  P  E  S  Q  L  K  A  V  K  V  S  P  P  K  M  E  N  D  S  G  E  E  E  E  E  E  E  E  D  E  Q  G  A  T  L  C  G  A  C  G  D  N  Y  A  T  D  E  F  W  I  C  C  D  I  C  E  R  W  F  H  G  K  C  V  K  I  T  P  A  K  A  E  H  I  K  Q  Y  K  C  P  S  C  S  S  K  R  A  K  V  *  K  L  R  Q  G  Q  L  S  G  D  V  G  R  C  R  S  F  S  S  V  I  K  C  Q  K  L  N  V  C  *  W  N  W  D  V  H  L  L  S  V  I  L  L  S  D  C  V  L  D  F  K  E  I  V  P  V  I  I  L  C  L  K  I  H  F  H  F  L  L  V  Y  L  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74716" stop="74605"/>
                    <exon start="74474" stop="74442"/>
                    <exon start="72537" stop="72309"/>
                    <exon start="70275" stop="70155"/>
                    <exon start="70054" stop="69776"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLRVDKVIMENSVPRTVEEVFSDFKSRRAALIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFGKSDRKRLFQMINDLPTVFEVVTGAAKQTRDAPHNNSNKSKSSGKPRQPESQLKAVKVSPPKMENDSGEEEEEEEEDEQGATLCGACGDNYATDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSSKRAKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74951" e_stop="74605"/>
            <exon e_start="74474" e_stop="74442"/>
            <exon e_start="72532" e_stop="72309"/>
            <exon e_start="70275" e_stop="70155"/>
            <exon e_start="70054" e_stop="69554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="0.965"/>
          <exon-intron don_prob="0.932" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="74951" e_stop="74605" e_length="347"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74474" e_stop="74442" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.932" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74441" i_stop="72533" i_length="1909"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72532" e_stop="72309" e_length="224"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="72308" i_stop="70276" i_length="2033"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70275" e_stop="70155" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70154" i_stop="70055" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="70054" e_stop="69554" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74951" stop="74605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74912" stop="74609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74894" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="72532" stop="72309"/>
              <exon start="70275" stop="70155"/>
              <exon start="70054" stop="69940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72361" stop="72309"/>
              <exon start="70275" stop="70155"/>
              <exon start="70054" stop="69616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398429" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70268" stop="70155"/>
              <exon start="70054" stop="69617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201140" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70051" stop="69563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70031" stop="69579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70024" stop="69608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70024" stop="69608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69981" stop="69608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69957" stop="69608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69950" stop="69554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69838" stop="69575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG : ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG : GAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGGAAGTAAACCTCCCGGTGGAAGAGGTGCCTCCAGAACTTCCTGAACCAGCATTGGGCATAAATTTTGCACGTGATGGAATGCAAGAAAAAGACTGGTTATCACTTGTTGCTGTTCACAGTGATTCGTGGCTGCTTTCTGTTGCATTTTACTTTGGCGCAAGGTTTGGGTTCGGCAAGAGTGATAG : GAAGAGGCTTTTCCAAATGATAAATGATCTCCCAACAGTGTTTGAAGTTGTTACTGGAGCTGCTAAACAAACACGTGATGCTCCTCACAACAATAGCAACAAAAGCAAATCAAGTGGAAAG : CCTCGGCAGCCAGAGTCCCAACTCAAGGCAGTAAAGGTGTCTCCACCTAAAATGGAGAACGACAGTGGTGAGGAGGAAGAAGAAGAAGAAGAGGATGAACAAGGCGCAACTCTGTGTGGAGCTTGTGGTGATAATTATGCGACTGATGAATTCTGGATTTGCTGTGATATTTGCGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCAGCTAAAGCTGAGCATATCAAACAGTACAAGTGTCCTAGTTGCAGTAGCAAGAGAGCTAAAGTCTAAAAATTGCGGCAAGGACAATTAAGTGGTGATGTTGGAAGGTGTAGGAGTTTTAGCTCAGTTATCAAATGTCAAAAGTTAAATGTTTGCTGATGGAATTGGGATGTCCATTTGCTTTCTGTTATCTTGCTTTCGGATTGCGTTTTAGATTTTAAAGAAATTGTGCCTGTTATCATCTTGTGTTTGAAGATCCATTTTCACTTTTTACTTGTGTATTTATTATGA</gDNA_template>
            <first_frame> P  L  F  V  L  F  L  S  L  Q  S  L  P  L  Y  F  L  Q  F  L  S  F  F  L  I  K  S  S  F  S  L  H  I  A  N  *  F  S  N  F  G  Q  H  E  V  E  S  L  V  L  G  G  K  P  Y  F  I  S  T  H  F  L  F  F  F  F  S  K  D  S  I  F  F  L  V  D  L  L  E  I  A  C  R  Q  G  Y  Y  G  K  F  G  T  Q  D  C  R  R  S  I  Q  R  F  Q  K  S  *  S  C  F  D  *  S  T  Y  H  R :   C  *  E  V  L  S  A  V  *  S  W :   R  T  C  V  S  M  G  F  L  M  K  H  G  K  *  T  S  R  W  K  R  C  L  Q  N  F  L  N  Q  H  W  A  *  I  L  H  V  M  E  C  K  K  K  T  G  Y  H  L  L  L  F  T  V  I  R  G  C  F  L  L  H  F  T  L  A  Q  G  L  G  S  A  R  V  I   : G  R  G  F  S  K  *  *  M  I  S  Q  Q  C  L  K  L  L  L  E  L  L  N  K  H  V  M  L  L  T  T  I  A  T  K  A  N  Q  V  E  S :   L  G  S  Q  S  P  N  S  R  Q  *  R  C  L  H  L  K  W  R  T  T  V  V  R  R  K  K  K  K  K  R  M  N  K  A  Q  L  C  V  E  L  V  V  I  I  M  R  L  M  N  S  G  F  A  V  I  F  A  R  D  G  S  M  E  N  V  *  R  L  L  Q  L  K  L  S  I  S  N  S  T  S  V  L  V  A  V  A  R  E  L  K  S  K  N  C  G  K  D  N  *  V  V  M  L  E  G  V  G  V  L  A  Q  L  S  N  V  K  S  *  M  F  A  D  G  I  G  M  S  I  C  F  L  L  S  C  F  R  I  A  F  *  I  L  K  K  L  C  L  L  S  S  C  V  *  R  S  I  F  T  F  Y  L  C  I  Y  Y   </first_frame>
            <second_frame>  R  C  L  F  S  F  S  L  Y  N  L  C  H  F  T  S  Y  N  F  *  A  F  S  L  S  N  L  H  F  H  C  T  *  Q  T  N  F  Q  I  L  G  N  M  K  W  K  V  *  F  L  G  G  N  P  I  L  F  Q  P  T  S  C  F  F  S  F  P  K  T  Q  F  F  F  L  W  I  C  *  K  L  R  V  D  K  V  I  M  E  N  S  V  P  R  T  V  E  E  V  F  S  D  F  K  S  R  R  A  A  L  I  K  A  L  T  T   : D  V  E  K  F  Y  Q  Q  C  D  P   : G  E  L  V  S  L  W  A  S  *  *  N  M  G  S  K  P  P  G  G  R  G  A  S  R  T  S  *  T  S  I  G  H  K  F  C  T  *  W  N  A  R  K  R  L  V  I  T  C  C  C  S  Q  *  F  V  A  A  F  C  C  I  L  L  W  R  K  V  W  V  R  Q  E  *  *  :  E  E  A  F  P  N  D  K  *  S  P  N  S  V  *  S  C  Y  W  S  C  *  T  N  T  *  C  S  S  Q  Q  *  Q  Q  K  Q  I  K  W  K   : A  S  A  A  R  V  P  T  Q  G  S  K  G  V  S  T  *  N  G  E  R  Q  W  *  G  G  R  R  R  R  R  G  *  T  R  R  N  S  V  W  S  L  W  *  *  L  C  D  *  *  I  L  D  L  L  *  Y  L  R  E  M  V  P  W  K  M  C  E  D  Y  S  S  *  S  *  A  Y  Q  T  V  Q  V  S  *  L  Q  *  Q  E  S  *  S  L  K  I  A  A  R  T  I  K  W  *  C  W  K  V  *  E  F  *  L  S  Y  Q  M  S  K  V  K  C  L  L  M  E  L  G  C  P  F  A  F  C  Y  L  A  F  G  L  R  F  R  F  *  R  N  C  A  C  Y  H  L  V  F  E  D  P  F  S  L  F  T  C  V  F  I  M  </second_frame>
            <third_frame>   A  V  C  S  L  S  L  S  T  I  S  A  T  L  L  L  T  I  S  K  L  F  P  Y  Q  I  F  I  F  T  A  H  S  K  L  I  F  K  F  W  A  T  *  S  G  K  F  S  S  W  G  E  T  L  F  Y  F  N  P  L  L  V  F  F  L  F  Q  R  L  N  F  F  S  C  G  F  V  R  N  C  V  *  T  R  L  L  W  K  I  R  Y  P  G  L  *  K  K  Y  S  A  I  S  K  V  V  E  L  L  *  L  K  H  L  P  Q  :  M  L  R  S  F  I  S  S  V  I  L  :  E  N  L  C  L  Y  G  L  P  N  E  T  W  E  V  N  L  P  V  E  E  V  P  P  E  L  P  E  P  A  L  G  I  N  F  A  R  D  G  M  Q  E  K  D  W  L  S  L  V  A  V  H  S  D  S  W  L  L  S  V  A  F  Y  F  G  A  R  F  G  F  G  K  S  D  R :   K  R  L  F  Q  M  I  N  D  L  P  T  V  F  E  V  V  T  G  A  A  K  Q  T  R  D  A  P  H  N  N  S  N  K  S  K  S  S  G  K  :  P  R  Q  P  E  S  Q  L  K  A  V  K  V  S  P  P  K  M  E  N  D  S  G  E  E  E  E  E  E  E  E  D  E  Q  G  A  T  L  C  G  A  C  G  D  N  Y  A  T  D  E  F  W  I  C  C  D  I  C  E  R  W  F  H  G  K  C  V  K  I  T  P  A  K  A  E  H  I  K  Q  Y  K  C  P  S  C  S  S  K  R  A  K  V  *  K  L  R  Q  G  Q  L  S  G  D  V  G  R  C  R  S  F  S  S  V  I  K  C  Q  K  L  N  V  C  *  W  N  W  D  V  H  L  L  S  V  I  L  L  S  D  C  V  L  D  F  K  E  I  V  P  V  I  I  L  C  L  K  I  H  F  H  F  L  L  V  Y  L  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74622" stop="74605"/>
                    <exon start="74474" stop="74442"/>
                    <exon start="72532" stop="72309"/>
                    <exon start="70275" stop="70155"/>
                    <exon start="70054" stop="69776"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKHLPQMLRSFISSVILENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFGKSDRKRLFQMINDLPTVFEVVTGAAKQTRDAPHNNSNKSKSSGKPRQPESQLKAVKVSPPKMENDSGEEEEEEEEDEQGATLCGACGDNYATDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSSKRAKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74843" stop="74634"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSNFGQHEVESLVLGGKPYFISTHFLFFFFSKDSIFFLVDLLEIACRQGYYGKFGTQDCRRSIQRFQKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="74951" e_stop="74605"/>
            <exon e_start="74474" e_stop="74442"/>
            <exon e_start="74161" e_stop="73958"/>
            <exon e_start="72537" e_stop="72502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="0.988"/>
          <exon-intron don_prob="0.932" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.569" acc_prob="0.981" e_score="0.985"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="74951" e_stop="74605" e_length="347"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74474" e_stop="74442" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.932" acc_prob="0.961">
            <gDNA_intron_boundary i_start="74441" i_stop="74162" i_length="280"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="74161" e_stop="73958" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.569" acc_prob="0.981">
            <gDNA_intron_boundary i_start="73957" i_stop="72538" i_length="1420"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="72537" e_stop="72502" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74951" stop="74605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74941" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="74161" stop="73958"/>
              <exon start="72537" stop="72502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395311" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74912" stop="74609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470941" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG : ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG : GGAGTGGCCTAAACCTTATGGTTAGAGGTTTCTGATTGTTGGAATCATTTTGTCATTCAATGTTCTTCTTTGGGTGTTATGCAGGAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAA : AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATG</gDNA_template>
            <first_frame> P  L  F  V  L  F  L  S  L  Q  S  L  P  L  Y  F  L  Q  F  L  S  F  F  L  I  K  S  S  F  S  L  H  I  A  N  *  F  S  N  F  G  Q  H  E  V  E  S  L  V  L  G  G  K  P  Y  F  I  S  T  H  F  L  F  F  F  F  S  K  D  S  I  F  F  L  V  D  L  L  E  I  A  C  R  Q  G  Y  Y  G  K  F  G  T  Q  D  C  R  R  S  I  Q  R  F  Q  K  S  *  S  C  F  D  *  S  T  Y  H  R :   C  *  E  V  L  S  A  V  *  S  W :   E  W  P  K  P  Y  G  *  R  F  L  I  V  G  I  I  L  S  F  N  V  L  L  W  V  L  C  R  N  G  K  I  V  F  L  *  S  S  L  S  L  Q  S  K  K  Q  F  F  C  M  Y  N  R  I  I  M  I  S  N  C  I  P  Q  H  E  L  *  K :   K  G  E  L  V  S  L  W  A  S  *   </first_frame>
            <second_frame>  R  C  L  F  S  F  S  L  Y  N  L  C  H  F  T  S  Y  N  F  *  A  F  S  L  S  N  L  H  F  H  C  T  *  Q  T  N  F  Q  I  L  G  N  M  K  W  K  V  *  F  L  G  G  N  P  I  L  F  Q  P  T  S  C  F  F  S  F  P  K  T  Q  F  F  F  L  W  I  C  *  K  L  R  V  D  K  V  I  M  E  N  S  V  P  R  T  V  E  E  V  F  S  D  F  K  S  R  R  A  A  L  I  K  A  L  T  T   : D  V  E  K  F  Y  Q  Q  C  D  P   : G  S  G  L  N  L  M  V  R  G  F  *  L  L  E  S  F  C  H  S  M  F  F  F  G  C  Y  A  G  M  G  R  L  Y  F  C  E  V  V  Y  R  F  N  Q  K  S  N  S  S  A  C  T  T  E  L  S  *  F  Q  T  A  F  H  N  M  N  C  K   : K  K  E  N  L  C  L  Y  G  L  P  N  </second_frame>
            <third_frame>   A  V  C  S  L  S  L  S  T  I  S  A  T  L  L  L  T  I  S  K  L  F  P  Y  Q  I  F  I  F  T  A  H  S  K  L  I  F  K  F  W  A  T  *  S  G  K  F  S  S  W  G  E  T  L  F  Y  F  N  P  L  L  V  F  F  L  F  Q  R  L  N  F  F  S  C  G  F  V  R  N  C  V  *  T  R  L  L  W  K  I  R  Y  P  G  L  *  K  K  Y  S  A  I  S  K  V  V  E  L  L  *  L  K  H  L  P  Q  :  M  L  R  S  F  I  S  S  V  I  L  :  G  V  A  *  T  L  W  L  E  V  S  D  C  W  N  H  F  V  I  Q  C  S  S  L  G  V  M  Q  E  W  E  D  C  I  F  V  K  *  F  I  A  S  I  K  K  A  I  L  L  H  V  Q  Q  N  Y  H  D  F  K  L  H  S  T  T  *  I  V  K  :  K  R  R  T  C  V  S  M  G  F  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74843" stop="74634"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSNFGQHEVESLVLGGKPYFISTHFLFFFFSKDSIFFLVDLLEIACRQGYYGKFGTQDCRRSIQRFQKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="74951" e_stop="74605"/>
            <exon e_start="74474" e_stop="74442"/>
            <exon e_start="74077" e_stop="73958"/>
            <exon e_start="72537" e_stop="72493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="0.991"/>
          <exon-intron don_prob="0.932" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.569" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="74951" e_stop="74605" e_length="347"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="74604" i_stop="74475" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74474" e_stop="74442" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.932" acc_prob="0.990">
            <gDNA_intron_boundary i_start="74441" i_stop="74078" i_length="364"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74077" e_stop="73958" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.569" acc_prob="0.981">
            <gDNA_intron_boundary i_start="73957" i_stop="72538" i_length="1420"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72537" e_stop="72493" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74951" stop="74605"/>
              <exon start="74474" stop="74442"/>
              <exon start="74077" stop="73958"/>
              <exon start="72537" stop="72493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74951" stop="74605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74912" stop="74609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470941" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGCTGTTTGTTCTCTTTCTCTCTCTACAATCTCTGCCACTTTACTTCTTACAATTTCTAAGCTTTTTCCTTATCAAATCTTCATTTTCACTGCACATAGCAAACTAATTTTCAAATTTTGGGCAACATGAAGTGGAAAGTTTAGTTCTTGGGGGGAAACCCTATTTTATTTCAACCCACTTCTTGTTTTTTTTCTTTTCCAAAGACTCAATTTTTTTTCTTGTGGATTTGTTAGAAATTGCGTGTAGACAAGGTTATTATGGAAAATTCGGTACCCAGGACTGTAGAAGAAGTATTCAGCGATTTCAAAAGTCGTAGAGCTGCTTTGATTAAAGCACTTACCACAG : ATGTTGAGAAGTTTTATCAGCAGTGTGATCCTG : GAATGGGAAGATTGTATTTTTGTGAAGTAGTTTATCGCTTCAATCAAAAAAGCAATTCTTCTGCATGTACAACAGAATTATCATGATTTCAAACTGCATTCCACAACATGAATTGTAAAA : AAAAGGAGAACTTGTGTCTCTATGGGCTTCCTAATGAAACATGGG</gDNA_template>
            <first_frame> P  L  F  V  L  F  L  S  L  Q  S  L  P  L  Y  F  L  Q  F  L  S  F  F  L  I  K  S  S  F  S  L  H  I  A  N  *  F  S  N  F  G  Q  H  E  V  E  S  L  V  L  G  G  K  P  Y  F  I  S  T  H  F  L  F  F  F  F  S  K  D  S  I  F  F  L  V  D  L  L  E  I  A  C  R  Q  G  Y  Y  G  K  F  G  T  Q  D  C  R  R  S  I  Q  R  F  Q  K  S  *  S  C  F  D  *  S  T  Y  H  R :   C  *  E  V  L  S  A  V  *  S  W :   N  G  K  I  V  F  L  *  S  S  L  S  L  Q  S  K  K  Q  F  F  C  M  Y  N  R  I  I  M  I  S  N  C  I  P  Q  H  E  L  *  K :   K  G  E  L  V  S  L  W  A  S  *  *  N  M   </first_frame>
            <second_frame>  R  C  L  F  S  F  S  L  Y  N  L  C  H  F  T  S  Y  N  F  *  A  F  S  L  S  N  L  H  F  H  C  T  *  Q  T  N  F  Q  I  L  G  N  M  K  W  K  V  *  F  L  G  G  N  P  I  L  F  Q  P  T  S  C  F  F  S  F  P  K  T  Q  F  F  F  L  W  I  C  *  K  L  R  V  D  K  V  I  M  E  N  S  V  P  R  T  V  E  E  V  F  S  D  F  K  S  R  R  A  A  L  I  K  A  L  T  T   : D  V  E  K  F  Y  Q  Q  C  D  P   : G  M  G  R  L  Y  F  C  E  V  V  Y  R  F  N  Q  K  S  N  S  S  A  C  T  T  E  L  S  *  F  Q  T  A  F  H  N  M  N  C  K   : K  K  E  N  L  C  L  Y  G  L  P  N  E  T  W  </second_frame>
            <third_frame>   A  V  C  S  L  S  L  S  T  I  S  A  T  L  L  L  T  I  S  K  L  F  P  Y  Q  I  F  I  F  T  A  H  S  K  L  I  F  K  F  W  A  T  *  S  G  K  F  S  S  W  G  E  T  L  F  Y  F  N  P  L  L  V  F  F  L  F  Q  R  L  N  F  F  S  C  G  F  V  R  N  C  V  *  T  R  L  L  W  K  I  R  Y  P  G  L  *  K  K  Y  S  A  I  S  K  V  V  E  L  L  *  L  K  H  L  P  Q  :  M  L  R  S  F  I  S  S  V  I  L  :  E  W  E  D  C  I  F  V  K  *  F  I  A  S  I  K  K  A  I  L  L  H  V  Q  Q  N  Y  H  D  F  K  L  H  S  T  T  *  I  V  K  :  K  R  R  T  C  V  S  M  G  F  L  M  K  H  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74716" stop="74605"/>
                    <exon start="74474" stop="74442"/>
                    <exon start="74077" stop="73992"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLRVDKVIMENSVPRTVEEVFSDFKSRRAALIKALTTDVEKFYQQCDPGMGRLYFCEVVYRFNQKSNSSACTTELS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74843" stop="74634"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSNFGQHEVESLVLGGKPYFISTHFLFFFFSKDSIFFLVDLLEIACRQGYYGKFGTQDCRRSIQRFQKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="82011" PGL_stop="81329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82011" e_stop="81329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="82011" e_stop="81329" e_length="683"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82011" stop="81348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81741" stop="81329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351497" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAGCATCATGTTGCTACATCACTCGGGCTCAATTCCCTCTCAAATTCCTACACTAACATCGCGCTAGACCCTATTGGGGAGCGCGGTTAATATCACTACATCAACCTTAACACCTTTCACATCATTAGTAGCAACAACAAATAATACCACTGATGATCTCCATAGACTAATAAACTTAGACCAAGTCGTCGCGTTTCATAATAATCAACACCATTTTCATCCTCCTCCTGGTGTTGTGCCCCAACAATATCCTCCTCCATTATTACTGCAACAACCACAATCTTTACTTCATCAAGGATCACTTCCATCTTCCGCGGCCGCGGCTTTTTCAGACAGATTGTGGGAGTGGAATTCAATTAATCAAACAGATGGAAGCTGCAAAGATGATCATTATGATCAAGGCAATAATCCCTTCAAGTAATTTCATCATCACTAAACTGCACATATACATATCATATATATATATCTACTGATATTTATAATTTTACTAGCTAGCTAGCTAGCTCTATGATCAAATTAAATAATGTGTGTGTGGGATCTTATTGTTAGGGTTTTGGTTAGTTCTAATTAGTTAGGGTACTATTATTAAGCTATTGTAATCTTTCTAATTACTTTTCTGTACTTGATGAAATTAGATATGTGCTAATTAAGTTAGCTCTACAGTTCAATTCATCTTCTTAG</gDNA_template>
            <first_frame> I  S  I  M  L  L  H  H  S  G  S  I  P  S  Q  I  P  T  L  T  S  R  *  T  L  L  G  S  A  V  N  I  T  T  S  T  L  T  P  F  T  S  L  V  A  T  T  N  N  T  T  D  D  L  H  R  L  I  N  L  D  Q  V  V  A  F  H  N  N  Q  H  H  F  H  P  P  P  G  V  V  P  Q  Q  Y  P  P  P  L  L  L  Q  Q  P  Q  S  L  L  H  Q  G  S  L  P  S  S  A  A  A  A  F  S  D  R  L  W  E  W  N  S  I  N  Q  T  D  G  S  C  K  D  D  H  Y  D  Q  G  N  N  P  F  K  *  F  H  H  H  *  T  A  H  I  H  I  I  Y  I  Y  L  L  I  F  I  I  L  L  A  S  *  L  A  L  *  S  N  *  I  M  C  V  W  D  L  I  V  R  V  L  V  S  S  N  *  L  G  Y  Y  Y  *  A  I  V  I  F  L  I  T  F  L  Y  L  M  K  L  D  M  C  *  L  S  *  L  Y  S  S  I  H  L  L   </first_frame>
            <second_frame>  S  A  S  C  C  Y  I  T  R  A  Q  F  P  L  K  F  L  H  *  H  R  A  R  P  Y  W  G  A  R  L  I  S  L  H  Q  P  *  H  L  S  H  H  *  *  Q  Q  Q  I  I  P  L  M  I  S  I  D  *  *  T  *  T  K  S  S  R  F  I  I  I  N  T  I  F  I  L  L  L  V  L  C  P  N  N  I  L  L  H  Y  Y  C  N  N  H  N  L  Y  F  I  K  D  H  F  H  L  P  R  P  R  L  F  Q  T  D  C  G  S  G  I  Q  L  I  K  Q  M  E  A  A  K  M  I  I  M  I  K  A  I  I  P  S  S  N  F  I  I  T  K  L  H  I  Y  I  S  Y  I  Y  I  Y  *  Y  L  *  F  Y  *  L  A  S  *  L  Y  D  Q  I  K  *  C  V  C  G  I  L  L  L  G  F  W  L  V  L  I  S  *  G  T  I  I  K  L  L  *  S  F  *  L  L  F  C  T  *  *  N  *  I  C  A  N  *  V  S  S  T  V  Q  F  I  F  L  </second_frame>
            <third_frame>   Q  H  H  V  A  T  S  L  G  L  N  S  L  S  N  S  Y  T  N  I  A  L  D  P  I  G  E  R  G  *  Y  H  Y  I  N  L  N  T  F  H  I  I  S  S  N  N  K  *  Y  H  *  *  S  P  *  T  N  K  L  R  P  S  R  R  V  S  *  *  S  T  P  F  S  S  S  S  W  C  C  A  P  T  I  S  S  S  I  I  T  A  T  T  T  I  F  T  S  S  R  I  T  S  I  F  R  G  R  G  F  F  R  Q  I  V  G  V  E  F  N  *  S  N  R  W  K  L  Q  R  *  S  L  *  S  R  Q  *  S  L  Q  V  I  S  S  S  L  N  C  T  Y  T  Y  H  I  Y  I  S  T  D  I  Y  N  F  T  S  *  L  A  S  S  M  I  K  L  N  N  V  C  V  G  S  Y  C  *  G  F  G  *  F  *  L  V  R  V  L  L  L  S  Y  C  N  L  S  N  Y  F  S  V  L  D  E  I  R  Y  V  L  I  K  L  A  L  Q  F  N  S  S  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81942" stop="81589"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLLGSAVNITTSTLTPFTSLVATTNNTTDDLHRLINLDQVVAFHNNQHHFHPPPGVVPQQYPPPLLLQQPQSLLHQGSLPSSAAAAFSDRLWEWNSINQTDGSCKDDHYDQGNNPFK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81830" stop="81537"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKSSRFIIINTIFILLLVLCPNNILLHYYCNNHNLYFIKDHFHLPRPRLFQTDCGSGIQLIKQMEAAKMIIMIKAIIPSSNFIITKLHIYISYIYIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="83347" PGL_stop="82230"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83347" e_stop="83033"/>
            <exon e_start="82648" e_stop="82380"/>
            <exon e_start="82273" e_stop="82230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.290" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="83347" e_stop="83033" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="83032" i_stop="82649" i_length="384"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="82648" e_stop="82380" e_length="269"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.290">
            <gDNA_intron_boundary i_start="82379" i_stop="82274" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82273" e_stop="82230" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83347" stop="83033"/>
              <exon start="82648" stop="82380"/>
              <exon start="82273" stop="82230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83347" stop="83033"/>
              <exon start="82648" stop="82518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTTATACTATCTTTTTTTTTTTATGGCAATTGTCCCTTTTATTACTACAAACATGAGTCAATCCCAACAACAACATCAACAACAACAAGATGATGATGATAACAACAACATCAACAACACTATTAAAGGAGATGATAATGATGATGACGATGATCATGAACACGACATGGTCATGCCTGGTTTTCGATTTCATCCTACTGAGGAAGAGCTTGTAGTAGTTTTATCTTCGCCGTAAGGTTGAAGGAAAACGTTTTAATGTGGAACTCATCACTTTTCTTGATCTTTATCGTTATGACCCTTGGGAGCTTCCTG : CTTTGGCAGCAATTGGAGAGAAGGAGTGGTATTTCTATGTGCCAAGAGATAGAAAGTATAGAAATGGAGATAGGCCAAATAGGGTTACAACATCAGGGTATTGGAAGGCTACTGGAGCTGATAGAATGATTAGAACGGAGAATTCGCGGTCCATTGGCCTGAAAAAGACATTGGTTTTCTACTCAGGGAAGGCTCCTAAAGGCATAAGAAGTAGTTGGATTATGAATGAATATCGTCTTCCACATCATGAAACTGAACGCCTACAAAAG : GCAGAAATTTCACTTTGTCGTGTCTATAAAAGAGCTGGAGTGGA</gDNA_template>
            <first_frame> K  V  I  L  S  F  F  F  Y  G  N  C  P  F  Y  Y  Y  K  H  E  S  I  P  T  T  T  S  T  T  T  R  *  *  *  *  Q  Q  H  Q  Q  H  Y  *  R  R  *  *  *  *  *  R  *  S  *  T  R  H  G  H  A  W  F  S  I  S  S  Y  *  G  R  A  C  S  S  F  I  F  A  V  R  L  K  E  N  V  L  M  W  N  S  S  L  F  L  I  F  I  V  M  T  L  G  S  F  L  :  L  W  Q  Q  L  E  R  R  S  G  I  S  M  C  Q  E  I  E  S  I  E  M  E  I  G  Q  I  G  L  Q  H  Q  G  I  G  R  L  L  E  L  I  E  *  L  E  R  R  I  R  G  P  L  A  *  K  R  H  W  F  S  T  Q  G  R  L  L  K  A  *  E  V  V  G  L  *  M  N  I  V  F  H  I  M  K  L  N  A  Y  K  R :   Q  K  F  H  F  V  V  S  I  K  E  L  E  W  </first_frame>
            <second_frame>  K  L  Y  Y  L  F  F  F  M  A  I  V  P  F  I  T  T  N  M  S  Q  S  Q  Q  Q  H  Q  Q  Q  Q  D  D  D  D  N  N  N  I  N  N  T  I  K  G  D  D  N  D  D  D  D  D  H  E  H  D  M  V  M  P  G  F  R  F  H  P  T  E  E  E  L  V  V  V  L  S  S  P  *  G  *  R  K  T  F  *  C  G  T  H  H  F  S  *  S  L  S  L  *  P  L  G  A  S  C :   F  G  S  N  W  R  E  G  V  V  F  L  C  A  K  R  *  K  V  *  K  W  R  *  A  K  *  G  Y  N  I  R  V  L  E  G  Y  W  S  *  *  N  D  *  N  G  E  F  A  V  H  W  P  E  K  D  I  G  F  L  L  R  E  G  S  *  R  H  K  K  *  L  D  Y  E  *  I  S  S  S  T  S  *  N  *  T  P  T  K   : G  R  N  F  T  L  S  C  L  *  K  S  W  S  G </second_frame>
            <third_frame>   S  Y  T  I  F  F  F  L  W  Q  L  S  L  L  L  L  Q  T  *  V  N  P  N  N  N  I  N  N  N  K  M  M  M  I  T  T  T  S  T  T  L  L  K  E  M  I  M  M  M  T  M  I  M  N  T  T  W  S  C  L  V  F  D  F  I  L  L  R  K  S  L  *  *  F  Y  L  R  R  K  V  E  G  K  R  F  N  V  E  L  I  T  F  L  D  L  Y  R  Y  D  P  W  E  L  P   : A  L  A  A  I  G  E  K  E  W  Y  F  Y  V  P  R  D  R  K  Y  R  N  G  D  R  P  N  R  V  T  T  S  G  Y  W  K  A  T  G  A  D  R  M  I  R  T  E  N  S  R  S  I  G  L  K  K  T  L  V  F  Y  S  G  K  A  P  K  G  I  R  S  S  W  I  M  N  E  Y  R  L  P  H  H  E  T  E  R  L  Q  K  :  A  E  I  S  L  C  R  V  Y  K  R  A  G  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83126" stop="83033"/>
                    <exon start="82648" stop="82380"/>
                    <exon start="82273" stop="82232"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENSRSIGLKKTLVFYSGKAPKGIRSSWIMNEYRLPHHETERLQKAEISLCRVYKRAGV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83346" stop="83110"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLYYLFFFMAIVPFITTNMSQSQQQHQQQQDDDDNNNINNTIKGDDNDDDDDHEHDMVMPGFRFHPTEEELVVVLSSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="96915" PGL_stop="99584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96915" e_stop="97423"/>
            <exon e_start="99275" e_stop="99584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.714" e_score="0.914"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="96915" e_stop="97423" e_length="509"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.714">
            <gDNA_intron_boundary i_start="97424" i_stop="99274" i_length="1851"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="99275" e_stop="99584" e_length="310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96915" stop="97423"/>
              <exon start="99275" stop="99303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96929" stop="97284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96955" stop="97423"/>
              <exon start="99275" stop="99329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96959" stop="97423"/>
              <exon start="99275" stop="99584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96959" stop="97423"/>
              <exon start="99275" stop="99369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATTTGTTACGCAATTCCAGCAATGTCTACCGAAAAACCACCGGTTTGCGTCACCGGAGCCAACGGATTCATTGGTTCATGGGTGGTTCAGACGCTCCTCAACCGCGGCTACACCGCCATTTACGCCGCCATCTTCCCCGGTTCCGATCCTTCGCACCTCCACTCTCTCGCCGGTGCGTCTAACCCCGGCGTGCGAATATTGGTTCACGAAGTCAACATCCTTGACGCTGATGCGGTCTCTAGGGCAATTGAGGGATGCGGTGGCGGCGGCGTCTTCCACGTGGCGTCGCCGTGTACGCTAGAGGATCCGGTGGACCCGCAGAAGGAGCTGGTGGGGCCTGCCGTACAGGGTACAATCAATGTGCTCACGGCGGCGAAGTTGTATAATGTTCGGCGCGTGGTGCTCACTTCCTCTATTTCGGCCATGGTCCCCAATCCTGGTTGGCCGGAAAACAAGGTCTTCGATGAGTTGTCGTGGACTGATCTTGACTACTGCAAGTCCCGCCAG : AAATGGTACCCAGTCTCAAAGACACTTGCTGAGAAGGCTGCATGGGAATTTGCGGAGAAGAATGGATTGGATGTGGTAGCAATTAATCCAGCTACATGTCTTGGTGAACTTCTGCAACCTGGACTGAATGCAAGCTGCGCTGTTTTGCAACAACTGCTTCAGGGATCAACAGATACCCAAGAGTATCATTGGTTAGGGGCTGTGCACGTCAAAGATGTGGCAGCGGCACAGATTTTGTTATTTGAGAGCCCCCGTGCTTCTGGAAGATACTTATGTACCAATGGCATTTACCAGTTTGGTGATTTTGCTG</gDNA_template>
            <first_frame> R  F  V  T  Q  F  Q  Q  C  L  P  K  N  H  R  F  A  S  P  E  P  T  D  S  L  V  H  G  W  F  R  R  S  S  T  A  A  T  P  P  F  T  P  P  S  S  P  V  P  I  L  R  T  S  T  L  S  P  V  R  L  T  P  A  C  E  Y  W  F  T  K  S  T  S  L  T  L  M  R  S  L  G  Q  L  R  D  A  V  A  A  A  S  S  T  W  R  R  R  V  R  *  R  I  R  W  T  R  R  R  S  W  W  G  L  P  Y  R  V  Q  S  M  C  S  R  R  R  S  C  I  M  F  G  A  W  C  S  L  P  L  F  R  P  W  S  P  I  L  V  G  R  K  T  R  S  S  M  S  C  R  G  L  I  L  T  T  A  S  P  A  R :   N  G  T  Q  S  Q  R  H  L  L  R  R  L  H  G  N  L  R  R  R  M  D  W  M  W  *  Q  L  I  Q  L  H  V  L  V  N  F  C  N  L  D  *  M  Q  A  A  L  F  C  N  N  C  F  R  D  Q  Q  I  P  K  S  I  I  G  *  G  L  C  T  S  K  M  W  Q  R  H  R  F  C  Y  L  R  A  P  V  L  L  E  D  T  Y  V  P  M  A  F  T  S  L  V  I  L  L </first_frame>
            <second_frame>  D  L  L  R  N  S  S  N  V  Y  R  K  T  T  G  L  R  H  R  S  Q  R  I  H  W  F  M  G  G  S  D  A  P  Q  P  R  L  H  R  H  L  R  R  H  L  P  R  F  R  S  F  A  P  P  L  S  R  R  C  V  *  P  R  R  A  N  I  G  S  R  S  Q  H  P  *  R  *  C  G  L  *  G  N  *  G  M  R  W  R  R  R  L  P  R  G  V  A  V  Y  A  R  G  S  G  G  P  A  E  G  A  G  G  A  C  R  T  G  Y  N  Q  C  A  H  G  G  E  V  V  *  C  S  A  R  G  A  H  F  L  Y  F  G  H  G  P  Q  S  W  L  A  G  K  Q  G  L  R  *  V  V  V  D  *  S  *  L  L  Q  V  P  P   : E  M  V  P  S  L  K  D  T  C  *  E  G  C  M  G  I  C  G  E  E  W  I  G  C  G  S  N  *  S  S  Y  M  S  W  *  T  S  A  T  W  T  E  C  K  L  R  C  F  A  T  T  A  S  G  I  N  R  Y  P  R  V  S  L  V  R  G  C  A  R  Q  R  C  G  S  G  T  D  F  V  I  *  E  P  P  C  F  W  K  I  L  M  Y  Q  W  H  L  P  V  W  *  F  C   </second_frame>
            <third_frame>   I  C  Y  A  I  P  A  M  S  T  E  K  P  P  V  C  V  T  G  A  N  G  F  I  G  S  W  V  V  Q  T  L  L  N  R  G  Y  T  A  I  Y  A  A  I  F  P  G  S  D  P  S  H  L  H  S  L  A  G  A  S  N  P  G  V  R  I  L  V  H  E  V  N  I  L  D  A  D  A  V  S  R  A  I  E  G  C  G  G  G  G  V  F  H  V  A  S  P  C  T  L  E  D  P  V  D  P  Q  K  E  L  V  G  P  A  V  Q  G  T  I  N  V  L  T  A  A  K  L  Y  N  V  R  R  V  V  L  T  S  S  I  S  A  M  V  P  N  P  G  W  P  E  N  K  V  F  D  E  L  S  W  T  D  L  D  Y  C  K  S  R  Q  :  K  W  Y  P  V  S  K  T  L  A  E  K  A  A  W  E  F  A  E  K  N  G  L  D  V  V  A  I  N  P  A  T  C  L  G  E  L  L  Q  P  G  L  N  A  S  C  A  V  L  Q  Q  L  L  Q  G  S  T  D  T  Q  E  Y  H  W  L  G  A  V  H  V  K  D  V  A  A  A  Q  I  L  L  F  E  S  P  R  A  S  G  R  Y  L  C  T  N  G  I  Y  Q  F  G  D  F  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96917" stop="97423"/>
                    <exon start="99275" stop="99583"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICYAIPAMSTEKPPVCVTGANGFIGSWVVQTLLNRGYTAIYAAIFPGSDPSHLHSLAGASNPGVRILVHEVNILDADAVSRAIEGCGGGGVFHVASPCTLEDPVDPQKELVGPAVQGTINVLTAAKLYNVRRVVLTSSISAMVPNPGWPENKVFDELSWTDLDYCKSRQKWYPVSKTLAEKAAWEFAEKNGLDVVAINPATCLGELLQPGLNASCAVLQQLLQGSTDTQEYHWLGAVHVKDVAAAQILLFESPRASGRYLCTNGIYQFGDFA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="103439" PGL_stop="104850"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103439" e_stop="103619"/>
            <exon e_start="103705" e_stop="103951"/>
            <exon e_start="104020" e_stop="104178"/>
            <exon e_start="104261" e_stop="104407"/>
            <exon e_start="104695" e_stop="104850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103439" e_stop="103619" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.923">
            <gDNA_intron_boundary i_start="103620" i_stop="103704" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103705" e_stop="103951" e_length="247"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="103952" i_stop="104019" i_length="68"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104020" e_stop="104178" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104179" i_stop="104260" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="104261" e_stop="104407" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104408" i_stop="104694" i_length="287"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="104695" e_stop="104850" e_length="156"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103439" stop="103619"/>
              <exon start="103705" stop="103951"/>
              <exon start="104020" stop="104178"/>
              <exon start="104261" stop="104389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103548" stop="103619"/>
              <exon start="103705" stop="103951"/>
              <exon start="104020" stop="104178"/>
              <exon start="104261" stop="104407"/>
              <exon start="104695" stop="104850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103549" stop="103619"/>
              <exon start="103705" stop="103951"/>
              <exon start="104020" stop="104178"/>
              <exon start="104261" stop="104399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103605" stop="103619"/>
              <exon start="103705" stop="103951"/>
              <exon start="104020" stop="104178"/>
              <exon start="104261" stop="104407"/>
              <exon start="104695" stop="104777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAATCTAACATTGTACTTTGATCTAACAACCCCCACCCCCTTCTCAACCATATATATTCATCTATATTTTCCCTCATTTTGAGGAACAAAACTAAAATAAAAGCTCTCACATATCCTTTTTTTTGGTGGCTCAAGATGAGTAATCTTACTTCTAGTCCTGCACCTTGTAGTAGATCATG : GTCAATTAGTGAGGACTCATTGAGAAGATATGTGTTCTATGCAAGTGAAAATTGCATCCAGGAGTTGTTATCAGCTTCAGATTCAAAAAGCTGTAACGATGGCTGGAAAATACTCGGCGTAGATAACGGCGTTGAGATAGCTAAACGCCGTTCAGGTTCCCTTCACACTTTCCGTAGCCGTTGGTTACTCAAATCTGTTTCTCCTCAACAATTCATCACTGTAGCTAACGCCATTGATGCTGCAAGG : CAATGGGACGGGGACTTAGTAGAAGCAAGATACATAAAGGATTTGGAAGATAATTTGAGTATTATACGTCTTAGATTTGGGGAAAATTCGAAGCCTTTATTCAGAAACAGAGAATTCATTGTCTATGAACGTCGTGAAACTATGGATGATGGAACACTG : GTAGTAGCAGTAGCTTCACTTCCAAAAGAGATAGCAGCAGGTTTGCACCCAAAGCAAAACAATGCAATAAGAGGTTTATTGTTGCAATCTGGATGGGTTGTTGAGAAAATTGATCATGATTCTTGCATGGTCACTTACGTTGTCCAG : TTGGATCCAGCAGGATGGTTACCAAAATGCTTCGTGAATCGGTTGAACACAAAGTTGGTTATGATCATTGATAACCTTAAAAAGCAAGTGCTTTCTAGCCCTACCAATAGTGATGATAGTACTTGATTTAATTACTACTTTTGTACAAAAAAAAAA</gDNA_template>
            <first_frame> N  N  L  T  L  Y  F  D  L  T  T  P  T  P  F  S  T  I  Y  I  H  L  Y  F  P  S  F  *  G  T  K  L  K  *  K  L  S  H  I  L  F  F  G  G  S  R  *  V  I  L  L  L  V  L  H  L  V  V  D  H   : G  Q  L  V  R  T  H  *  E  D  M  C  S  M  Q  V  K  I  A  S  R  S  C  Y  Q  L  Q  I  Q  K  A  V  T  M  A  G  K  Y  S  A  *  I  T  A  L  R  *  L  N  A  V  Q  V  P  F  T  L  S  V  A  V  G  Y  S  N  L  F  L  L  N  N  S  S  L  *  L  T  P  L  M  L  Q  G :   N  G  T  G  T  *  *  K  Q  D  T  *  R  I  W  K  I  I  *  V  L  Y  V  L  D  L  G  K  I  R  S  L  Y  S  E  T  E  N  S  L  S  M  N  V  V  K  L  W  M  M  E  H  W :   *  *  Q  *  L  H  F  Q  K  R  *  Q  Q  V  C  T  Q  S  K  T  M  Q  *  E  V  Y  C  C  N  L  D  G  L  L  R  K  L  I  M  I  L  A  W  S  L  T  L  S  S :   W  I  Q  Q  D  G  Y  Q  N  A  S  *  I  G  *  T  Q  S  W  L  *  S  L  I  T  L  K  S  K  C  F  L  A  L  P  I  V  M  I  V  L  D  L  I  T  T  F  V  Q  K  K   </first_frame>
            <second_frame>  T  I  *  H  C  T  L  I  *  Q  P  P  P  P  S  Q  P  Y  I  F  I  Y  I  F  P  H  F  E  E  Q  N  *  N  K  S  S  H  I  S  F  F  L  V  A  Q  D  E  *  S  Y  F  *  S  C  T  L  *  *  I  M  :  V  N  *  *  G  L  I  E  K  I  C  V  L  C  K  *  K  L  H  P  G  V  V  I  S  F  R  F  K  K  L  *  R  W  L  E  N  T  R  R  R  *  R  R  *  D  S  *  T  P  F  R  F  P  S  H  F  P  *  P  L  V  T  Q  I  C  F  S  S  T  I  H  H  C  S  *  R  H  *  C  C  K   : A  M  G  R  G  L  S  R  S  K  I  H  K  G  F  G  R  *  F  E  Y  Y  T  S  *  I  W  G  K  F  E  A  F  I  Q  K  Q  R  I  H  C  L  *  T  S  *  N  Y  G  *  W  N  T   : G  S  S  S  S  F  T  S  K  R  D  S  S  R  F  A  P  K  A  K  Q  C  N  K  R  F  I  V  A  I  W  M  G  C  *  E  N  *  S  *  F  L  H  G  H  L  R  C  P   : V  G  S  S  R  M  V  T  K  M  L  R  E  S  V  E  H  K  V  G  Y  D  H  *  *  P  *  K  A  S  A  F  *  P  Y  Q  *  *  *  *  Y  L  I  *  L  L  L  L  Y  K  K  K  </second_frame>
            <third_frame>   Q  S  N  I  V  L  *  S  N  N  P  H  P  L  L  N  H  I  Y  S  S  I  F  S  L  I  L  R  N  K  T  K  I  K  A  L  T  Y  P  F  F  W  W  L  K  M  S  N  L  T  S  S  P  A  P  C  S  R  S  W :   S  I  S  E  D  S  L  R  R  Y  V  F  Y  A  S  E  N  C  I  Q  E  L  L  S  A  S  D  S  K  S  C  N  D  G  W  K  I  L  G  V  D  N  G  V  E  I  A  K  R  R  S  G  S  L  H  T  F  R  S  R  W  L  L  K  S  V  S  P  Q  Q  F  I  T  V  A  N  A  I  D  A  A  R  :  Q  W  D  G  D  L  V  E  A  R  Y  I  K  D  L  E  D  N  L  S  I  I  R  L  R  F  G  E  N  S  K  P  L  F  R  N  R  E  F  I  V  Y  E  R  R  E  T  M  D  D  G  T  L  :  V  V  A  V  A  S  L  P  K  E  I  A  A  G  L  H  P  K  Q  N  N  A  I  R  G  L  L  L  Q  S  G  W  V  V  E  K  I  D  H  D  S  C  M  V  T  Y  V  V  Q  :  L  D  P  A  G  W  L  P  K  C  F  V  N  R  L  N  T  K  L  V  M  I  I  D  N  L  K  K  Q  V  L  S  S  P  T  N  S  D  D  S  T  *  F  N  Y  Y  F  C  T  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103462" stop="103619"/>
                    <exon start="103705" stop="103951"/>
                    <exon start="104020" stop="104178"/>
                    <exon start="104261" stop="104407"/>
                    <exon start="104695" stop="104820"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNNPHPLLNHIYSSIFSLILRNKTKIKALTYPFFWWLKMSNLTSSPAPCSRSWSISEDSLRRYVFYASENCIQELLSASDSKSCNDGWKILGVDNGVEIAKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAARQWDGDLVEARYIKDLEDNLSIIRLRFGENSKPLFRNREFIVYERRETMDDGTLVVAVASLPKEIAAGLHPKQNNAIRGLLLQSGWVVEKIDHDSCMVTYVVQLDPAGWLPKCFVNRLNTKLVMIIDNLKKQVLSSPTNSDDST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="110846" PGL_stop="108787"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110732" e_stop="110595"/>
            <exon e_start="110447" e_stop="110228"/>
            <exon e_start="110139" e_stop="109904"/>
            <exon e_start="109524" e_stop="108787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.664" e_score="0.942"/>
          <exon-intron don_prob="0.949" acc_prob="0.885" e_score="0.977"/>
          <exon-intron don_prob="0.998" acc_prob="0.965" e_score="0.966"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="110732" e_stop="110595" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.664">
            <gDNA_intron_boundary i_start="110594" i_stop="110448" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="110447" e_stop="110228" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.885">
            <gDNA_intron_boundary i_start="110227" i_stop="110140" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="110139" e_stop="109904" e_length="236"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.965">
            <gDNA_intron_boundary i_start="109903" i_stop="109525" i_length="379"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="109524" e_stop="108787" e_length="738"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110732" stop="110595"/>
              <exon start="110447" stop="110228"/>
              <exon start="110139" stop="109904"/>
              <exon start="109524" stop="109464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109936" stop="109904"/>
              <exon start="109524" stop="108860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109236" stop="108787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109173" stop="108787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238691" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTACATGGGATTCTATTAAAGACAGCGGCGATGTTCCACAGTTAAAAGGTGTAAAATGTTTCACATTTGAAGAGCTGAAAAAATACACCAATAATTTTTCAGAAAGCAATTTTGTTGGATCTGGTGGTTATGGGAAG : GTGTACAAAGGCACACTTCCAGATGGACAACTTATTGCAATTAAAAGAGCAGGACAAGCATCTAAGCAAGGCGCCCTCGAGTTTAAAACTGAGATTGAGATTCTTTCAAGGTTTCATCACAAAAATGTTGTCAGCCTGGTAGGGTTTTGTTTCAGGCAAGGTGAACAGATGCTGGTCTATGAGTTTATACCAAATGGATCCTTGAAAGAGAGTCTTTCAG : GGAAGTCCGGGATTAAGTTAGATTGGAAGAGGAGACTTCGGATAGCCCTTGGAGCAGCCAGAGGTTTGCAATATCTTCATGATCATGTTGACCCCCCTATCATCCACAGAGATATCAAATCGAATAACATCTTGCTGGATGAGCGCTTGAATGCAAAAGTTGCTGATTTTGGTCTTTCCAAGACGATGTCTGAGCCAGACAAGGGCTATGTCAGCACTCAGGTTAAAGGAACAATG : GGCTACATGGATCCAGAGTACTACACAACACAACAGTTGACTGAGAAGAGTGATGTATATAGCTTTGGAGTTCTGCTGCTGGAGCTTATAACAGCACGGAGTCCTATTGTGAGAGGAAAATACATTGTGAAGGAATTGAGGCAAGCAATAGACAAGTCTAAAGACATGTACAACATTGATGAGTTTGTTGATCCTGCTATCCCCTCAAACATGACACCTATAAGCTTCAGGAAGTTTGTTGATCTAGCTTTCATGTGCCTCGAAGATGCAGGAGCTAATAGGCCAACAATGGGTGAGGTAGTGAAAGAGATTGAGAATATCATGGAAATAGATGGATTGAACAGTTGCGCTGAATCTAGATCAACTTCTGTGAGCCACGAAGGAACCAGCGCAACCTTTGATCATCCTTACAGTGAGGAAAGCCTAAATCGTTACAATGGGGTCACCAATTCGCGATAAACATCAACTCTTCTCATGGAACCAGGTGCATTGTCATAGAAATGGAAAGTCATTCAAGCAACTGTTGTGCTTTTGTGTTAGCTGTGTACACTCTGTGCACCTCTGTCATATGTGTGCGGCGTAAATAGCCTTATACTAGAAATGATTCAAAAATCCATCTAAGGATCTTCATAAACAGCCTTGTATGTTTCAACTGTTTGCTTCTGATAATCCAGGAGCTAGACTCCGTGGATTCAAAATGAGTGATTTTATTGTATTTTGGACTTTTAGTCACTCATT</gDNA_template>
            <first_frame> A  T  W  D  S  I  K  D  S  G  D  V  P  Q  L  K  G  V  K  C  F  T  F  E  E  L  K  K  Y  T  N  N  F  S  E  S  N  F  V  G  S  G  G  Y  G  K  :  V  Y  K  G  T  L  P  D  G  Q  L  I  A  I  K  R  A  G  Q  A  S  K  Q  G  A  L  E  F  K  T  E  I  E  I  L  S  R  F  H  H  K  N  V  V  S  L  V  G  F  C  F  R  Q  G  E  Q  M  L  V  Y  E  F  I  P  N  G  S  L  K  E  S  L  S   : G  K  S  G  I  K  L  D  W  K  R  R  L  R  I  A  L  G  A  A  R  G  L  Q  Y  L  H  D  H  V  D  P  P  I  I  H  R  D  I  K  S  N  N  I  L  L  D  E  R  L  N  A  K  V  A  D  F  G  L  S  K  T  M  S  E  P  D  K  G  Y  V  S  T  Q  V  K  G  T  M  :  G  Y  M  D  P  E  Y  Y  T  T  Q  Q  L  T  E  K  S  D  V  Y  S  F  G  V  L  L  L  E  L  I  T  A  R  S  P  I  V  R  G  K  Y  I  V  K  E  L  R  Q  A  I  D  K  S  K  D  M  Y  N  I  D  E  F  V  D  P  A  I  P  S  N  M  T  P  I  S  F  R  K  F  V  D  L  A  F  M  C  L  E  D  A  G  A  N  R  P  T  M  G  E  V  V  K  E  I  E  N  I  M  E  I  D  G  L  N  S  C  A  E  S  R  S  T  S  V  S  H  E  G  T  S  A  T  F  D  H  P  Y  S  E  E  S  L  N  R  Y  N  G  V  T  N  S  R  *  T  S  T  L  L  M  E  P  G  A  L  S  *  K  W  K  V  I  Q  A  T  V  V  L  L  C  *  L  C  T  L  C  A  P  L  S  Y  V  C  G  V  N  S  L  I  L  E  M  I  Q  K  S  I  *  G  S  S  *  T  A  L  Y  V  S  T  V  C  F  *  *  S  R  S  *  T  P  W  I  Q  N  E  *  F  Y  C  I  L  D  F  *  S  L  I </first_frame>
            <second_frame>  L  H  G  I  L  L  K  T  A  A  M  F  H  S  *  K  V  *  N  V  S  H  L  K  S  *  K  N  T  P  I  I  F  Q  K  A  I  L  L  D  L  V  V  M  G  R :   C  T  K  A  H  F  Q  M  D  N  L  L  Q  L  K  E  Q  D  K  H  L  S  K  A  P  S  S  L  K  L  R  L  R  F  F  Q  G  F  I  T  K  M  L  S  A  W  *  G  F  V  S  G  K  V  N  R  C  W  S  M  S  L  Y  Q  M  D  P  *  K  R  V  F  Q  :  G  S  P  G  L  S  *  I  G  R  G  D  F  G  *  P  L  E  Q  P  E  V  C  N  I  F  M  I  M  L  T  P  L  S  S  T  E  I  S  N  R  I  T  S  C  W  M  S  A  *  M  Q  K  L  L  I  L  V  F  P  R  R  C  L  S  Q  T  R  A  M  S  A  L  R  L  K  E  Q  W :   A  T  W  I  Q  S  T  T  Q  H  N  S  *  L  R  R  V  M  Y  I  A  L  E  F  C  C  W  S  L  *  Q  H  G  V  L  L  *  E  E  N  T  L  *  R  N  *  G  K  Q  *  T  S  L  K  T  C  T  T  L  M  S  L  L  I  L  L  S  P  Q  T  *  H  L  *  A  S  G  S  L  L  I  *  L  S  C  A  S  K  M  Q  E  L  I  G  Q  Q  W  V  R  *  *  K  R  L  R  I  S  W  K  *  M  D  *  T  V  A  L  N  L  D  Q  L  L  *  A  T  K  E  P  A  Q  P  L  I  I  L  T  V  R  K  A  *  I  V  T  M  G  S  P  I  R  D  K  H  Q  L  F  S  W  N  Q  V  H  C  H  R  N  G  K  S  F  K  Q  L  L  C  F  C  V  S  C  V  H  S  V  H  L  C  H  M  C  A  A  *  I  A  L  Y  *  K  *  F  K  N  P  S  K  D  L  H  K  Q  P  C  M  F  Q  L  F  A  S  D  N  P  G  A  R  L  R  G  F  K  M  S  D  F  I  V  F  W  T  F  S  H  S   </second_frame>
            <third_frame>   Y  M  G  F  Y  *  R  Q  R  R  C  S  T  V  K  R  C  K  M  F  H  I  *  R  A  E  K  I  H  Q  *  F  F  R  K  Q  F  C  W  I  W  W  L  W  E   : G  V  Q  R  H  T  S  R  W  T  T  Y  C  N  *  K  S  R  T  S  I  *  A  R  R  P  R  V  *  N  *  D  *  D  S  F  K  V  S  S  Q  K  C  C  Q  P  G  R  V  L  F  Q  A  R  *  T  D  A  G  L  *  V  Y  T  K  W  I  L  E  R  E  S  F  R :   E  V  R  D  *  V  R  L  E  E  E  T  S  D  S  P  W  S  S  Q  R  F  A  I  S  S  *  S  C  *  P  P  Y  H  P  Q  R  Y  Q  I  E  *  H  L  A  G  *  A  L  E  C  K  S  C  *  F  W  S  F  Q  D  D  V  *  A  R  Q  G  L  C  Q  H  S  G  *  R  N  N   : G  L  H  G  S  R  V  L  H  N  T  T  V  D  *  E  E  *  C  I  *  L  W  S  S  A  A  G  A  Y  N  S  T  E  S  Y  C  E  R  K  I  H  C  E  G  I  E  A  S  N  R  Q  V  *  R  H  V  Q  H  *  *  V  C  *  S  C  Y  P  L  K  H  D  T  Y  K  L  Q  E  V  C  *  S  S  F  H  V  P  R  R  C  R  S  *  *  A  N  N  G  *  G  S  E  R  D  *  E  Y  H  G  N  R  W  I  E  Q  L  R  *  I  *  I  N  F  C  E  P  R  R  N  Q  R  N  L  *  S  S  L  Q  *  G  K  P  K  S  L  Q  W  G  H  Q  F  A  I  N  I  N  S  S  H  G  T  R  C  I  V  I  E  M  E  S  H  S  S  N  C  C  A  F  V  L  A  V  Y  T  L  C  T  S  V  I  C  V  R  R  K  *  P  Y  T  R  N  D  S  K  I  H  L  R  I  F  I  N  S  L  V  C  F  N  C  L  L  L  I  I  Q  E  L  D  S  V  D  S  K  *  V  I  L  L  Y  F  G  L  L  V  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110732" stop="110595"/>
                    <exon start="110447" stop="110228"/>
                    <exon start="110139" stop="109904"/>
                    <exon start="109524" stop="109066"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATWDSIKDSGDVPQLKGVKCFTFEELKKYTNNFSESNFVGSGGYGKVYKGTLPDGQLIAIKRAGQASKQGALEFKTEIEILSRFHHKNVVSLVGFCFRQGEQMLVYEFIPNGSLKESLSGKSGIKLDWKRRLRIALGAARGLQYLHDHVDPPIIHRDIKSNNILLDERLNAKVADFGLSKTMSEPDKGYVSTQVKGTMGYMDPEYYTTQQLTEKSDVYSFGVLLLELITARSPIVRGKYIVKELRQAIDKSKDMYNIDEFVDPAIPSNMTPISFRKFVDLAFMCLEDAGANRPTMGEVVKEIENIMEIDGLNSCAESRSTSVSHEGTSATFDHPYSEESLNRYNGVTNSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="110846" e_stop="110812"/>
            <exon e_start="110731" e_stop="110595"/>
            <exon e_start="110447" e_stop="110228"/>
            <exon e_start="110139" e_stop="109904"/>
            <exon e_start="109524" e_stop="108787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.992" e_score="0.886"/>
          <exon-intron don_prob="0.992" acc_prob="0.664" e_score="0.942"/>
          <exon-intron don_prob="0.949" acc_prob="0.885" e_score="0.977"/>
          <exon-intron don_prob="0.998" acc_prob="0.965" e_score="0.970"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.886">
            <gDNA_exon_boundary e_start="110846" e_stop="110812" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.992">
            <gDNA_intron_boundary i_start="110811" i_stop="110732" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="110731" e_stop="110595" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.664">
            <gDNA_intron_boundary i_start="110594" i_stop="110448" i_length="147"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="110447" e_stop="110228" e_length="220"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.885">
            <gDNA_intron_boundary i_start="110227" i_stop="110140" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="0.970">
            <gDNA_exon_boundary e_start="110139" e_stop="109904" e_length="236"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.965">
            <gDNA_intron_boundary i_start="109903" i_stop="109525" i_length="379"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="109524" e_stop="108787" e_length="738"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110846" stop="110812"/>
              <exon start="110731" stop="110595"/>
              <exon start="110447" stop="110228"/>
              <exon start="110139" stop="109904"/>
              <exon start="109524" stop="109370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109936" stop="109904"/>
              <exon start="109524" stop="108860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109236" stop="108787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109173" stop="108787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238691" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTCAAGAAGCTGTTAGAAAGAGTAACCCTTTCG : CTACATGGGATTCTATTAAAGACAGCGGCGATGTTCCACAGTTAAAAGGTGTAAAATGTTTCACATTTGAAGAGCTGAAAAAATACACCAATAATTTTTCAGAAAGCAATTTTGTTGGATCTGGTGGTTATGGGAAG : GTGTACAAAGGCACACTTCCAGATGGACAACTTATTGCAATTAAAAGAGCAGGACAAGCATCTAAGCAAGGCGCCCTCGAGTTTAAAACTGAGATTGAGATTCTTTCAAGGTTTCATCACAAAAATGTTGTCAGCCTGGTAGGGTTTTGTTTCAGGCAAGGTGAACAGATGCTGGTCTATGAGTTTATACCAAATGGATCCTTGAAAGAGAGTCTTTCAG : GGAAGTCCGGGATTAAGTTAGATTGGAAGAGGAGACTTCGGATAGCCCTTGGAGCAGCCAGAGGTTTGCAATATCTTCATGATCATGTTGACCCCCCTATCATCCACAGAGATATCAAATCGAATAACATCTTGCTGGATGAGCGCTTGAATGCAAAAGTTGCTGATTTTGGTCTTTCCAAGACGATGTCTGAGCCAGACAAGGGCTATGTCAGCACTCAGGTTAAAGGAACAATG : GGCTACATGGATCCAGAGTACTACACAACACAACAGTTGACTGAGAAGAGTGATGTATATAGCTTTGGAGTTCTGCTGCTGGAGCTTATAACAGCACGGAGTCCTATTGTGAGAGGAAAATACATTGTGAAGGAATTGAGGCAAGCAATAGACAAGTCTAAAGACATGTACAACATTGATGAGTTTGTTGATCCTGCTATCCCCTCAAACATGACACCTATAAGCTTCAGGAAGTTTGTTGATCTAGCTTTCATGTGCCTCGAAGATGCAGGAGCTAATAGGCCAACAATGGGTGAGGTAGTGAAAGAGATTGAGAATATCATGGAAATAGATGGATTGAACAGTTGCGCTGAATCTAGATCAACTTCTGTGAGCCACGAAGGAACCAGCGCAACCTTTGATCATCCTTACAGTGAGGAAAGCCTAAATCGTTACAATGGGGTCACCAATTCGCGATAAACATCAACTCTTCTCATGGAACCAGGTGCATTGTCATAGAAATGGAAAGTCATTCAAGCAACTGTTGTGCTTTTGTGTTAGCTGTGTACACTCTGTGCACCTCTGTCATATGTGTGCGGCGTAAATAGCCTTATACTAGAAATGATTCAAAAATCCATCTAAGGATCTTCATAAACAGCCTTGTATGTTTCAACTGTTTGCTTCTGATAATCCAGGAGCTAGACTCCGTGGATTCAAAATGAGTGATTTTATTGTATTTTGGACTTTTAGTCACTCATT</gDNA_template>
            <first_frame> S  S  R  S  C  *  K  E  *  P  F  R :   Y  M  G  F  Y  *  R  Q  R  R  C  S  T  V  K  R  C  K  M  F  H  I  *  R  A  E  K  I  H  Q  *  F  F  R  K  Q  F  C  W  I  W  W  L  W  E   : G  V  Q  R  H  T  S  R  W  T  T  Y  C  N  *  K  S  R  T  S  I  *  A  R  R  P  R  V  *  N  *  D  *  D  S  F  K  V  S  S  Q  K  C  C  Q  P  G  R  V  L  F  Q  A  R  *  T  D  A  G  L  *  V  Y  T  K  W  I  L  E  R  E  S  F  R :   E  V  R  D  *  V  R  L  E  E  E  T  S  D  S  P  W  S  S  Q  R  F  A  I  S  S  *  S  C  *  P  P  Y  H  P  Q  R  Y  Q  I  E  *  H  L  A  G  *  A  L  E  C  K  S  C  *  F  W  S  F  Q  D  D  V  *  A  R  Q  G  L  C  Q  H  S  G  *  R  N  N   : G  L  H  G  S  R  V  L  H  N  T  T  V  D  *  E  E  *  C  I  *  L  W  S  S  A  A  G  A  Y  N  S  T  E  S  Y  C  E  R  K  I  H  C  E  G  I  E  A  S  N  R  Q  V  *  R  H  V  Q  H  *  *  V  C  *  S  C  Y  P  L  K  H  D  T  Y  K  L  Q  E  V  C  *  S  S  F  H  V  P  R  R  C  R  S  *  *  A  N  N  G  *  G  S  E  R  D  *  E  Y  H  G  N  R  W  I  E  Q  L  R  *  I  *  I  N  F  C  E  P  R  R  N  Q  R  N  L  *  S  S  L  Q  *  G  K  P  K  S  L  Q  W  G  H  Q  F  A  I  N  I  N  S  S  H  G  T  R  C  I  V  I  E  M  E  S  H  S  S  N  C  C  A  F  V  L  A  V  Y  T  L  C  T  S  V  I  C  V  R  R  K  *  P  Y  T  R  N  D  S  K  I  H  L  R  I  F  I  N  S  L  V  C  F  N  C  L  L  L  I  I  Q  E  L  D  S  V  D  S  K  *  V  I  L  L  Y  F  G  L  L  V  T  H  </first_frame>
            <second_frame>  A  Q  E  A  V  R  K  S  N  P  F   : A  T  W  D  S  I  K  D  S  G  D  V  P  Q  L  K  G  V  K  C  F  T  F  E  E  L  K  K  Y  T  N  N  F  S  E  S  N  F  V  G  S  G  G  Y  G  K  :  V  Y  K  G  T  L  P  D  G  Q  L  I  A  I  K  R  A  G  Q  A  S  K  Q  G  A  L  E  F  K  T  E  I  E  I  L  S  R  F  H  H  K  N  V  V  S  L  V  G  F  C  F  R  Q  G  E  Q  M  L  V  Y  E  F  I  P  N  G  S  L  K  E  S  L  S   : G  K  S  G  I  K  L  D  W  K  R  R  L  R  I  A  L  G  A  A  R  G  L  Q  Y  L  H  D  H  V  D  P  P  I  I  H  R  D  I  K  S  N  N  I  L  L  D  E  R  L  N  A  K  V  A  D  F  G  L  S  K  T  M  S  E  P  D  K  G  Y  V  S  T  Q  V  K  G  T  M  :  G  Y  M  D  P  E  Y  Y  T  T  Q  Q  L  T  E  K  S  D  V  Y  S  F  G  V  L  L  L  E  L  I  T  A  R  S  P  I  V  R  G  K  Y  I  V  K  E  L  R  Q  A  I  D  K  S  K  D  M  Y  N  I  D  E  F  V  D  P  A  I  P  S  N  M  T  P  I  S  F  R  K  F  V  D  L  A  F  M  C  L  E  D  A  G  A  N  R  P  T  M  G  E  V  V  K  E  I  E  N  I  M  E  I  D  G  L  N  S  C  A  E  S  R  S  T  S  V  S  H  E  G  T  S  A  T  F  D  H  P  Y  S  E  E  S  L  N  R  Y  N  G  V  T  N  S  R  *  T  S  T  L  L  M  E  P  G  A  L  S  *  K  W  K  V  I  Q  A  T  V  V  L  L  C  *  L  C  T  L  C  A  P  L  S  Y  V  C  G  V  N  S  L  I  L  E  M  I  Q  K  S  I  *  G  S  S  *  T  A  L  Y  V  S  T  V  C  F  *  *  S  R  S  *  T  P  W  I  Q  N  E  *  F  Y  C  I  L  D  F  *  S  L  I </second_frame>
            <third_frame>   L  K  K  L  L  E  R  V  T  L  S  :  L  H  G  I  L  L  K  T  A  A  M  F  H  S  *  K  V  *  N  V  S  H  L  K  S  *  K  N  T  P  I  I  F  Q  K  A  I  L  L  D  L  V  V  M  G  R :   C  T  K  A  H  F  Q  M  D  N  L  L  Q  L  K  E  Q  D  K  H  L  S  K  A  P  S  S  L  K  L  R  L  R  F  F  Q  G  F  I  T  K  M  L  S  A  W  *  G  F  V  S  G  K  V  N  R  C  W  S  M  S  L  Y  Q  M  D  P  *  K  R  V  F  Q  :  G  S  P  G  L  S  *  I  G  R  G  D  F  G  *  P  L  E  Q  P  E  V  C  N  I  F  M  I  M  L  T  P  L  S  S  T  E  I  S  N  R  I  T  S  C  W  M  S  A  *  M  Q  K  L  L  I  L  V  F  P  R  R  C  L  S  Q  T  R  A  M  S  A  L  R  L  K  E  Q  W :   A  T  W  I  Q  S  T  T  Q  H  N  S  *  L  R  R  V  M  Y  I  A  L  E  F  C  C  W  S  L  *  Q  H  G  V  L  L  *  E  E  N  T  L  *  R  N  *  G  K  Q  *  T  S  L  K  T  C  T  T  L  M  S  L  L  I  L  L  S  P  Q  T  *  H  L  *  A  S  G  S  L  L  I  *  L  S  C  A  S  K  M  Q  E  L  I  G  Q  Q  W  V  R  *  *  K  R  L  R  I  S  W  K  *  M  D  *  T  V  A  L  N  L  D  Q  L  L  *  A  T  K  E  P  A  Q  P  L  I  I  L  T  V  R  K  A  *  I  V  T  M  G  S  P  I  R  D  K  H  Q  L  F  S  W  N  Q  V  H  C  H  R  N  G  K  S  F  K  Q  L  L  C  F  C  V  S  C  V  H  S  V  H  L  C  H  M  C  A  A  *  I  A  L  Y  *  K  *  F  K  N  P  S  K  D  L  H  K  Q  P  C  M  F  Q  L  F  A  S  D  N  P  G  A  R  L  R  G  F  K  M  S  D  F  I  V  F  W  T  F  S  H  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110845" stop="110812"/>
                    <exon start="110731" stop="110595"/>
                    <exon start="110447" stop="110228"/>
                    <exon start="110139" stop="109904"/>
                    <exon start="109524" stop="109066"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1083</number_coding_nucleotides>
                  <number_encoded_amino_acids>361</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQEAVRKSNPFATWDSIKDSGDVPQLKGVKCFTFEELKKYTNNFSESNFVGSGGYGKVYKGTLPDGQLIAIKRAGQASKQGALEFKTEIEILSRFHHKNVVSLVGFCFRQGEQMLVYEFIPNGSLKESLSGKSGIKLDWKRRLRIALGAARGLQYLHDHVDPPIIHRDIKSNNILLDERLNAKVADFGLSKTMSEPDKGYVSTQVKGTMGYMDPEYYTTQQLTEKSDVYSFGVLLLELITARSPIVRGKYIVKELRQAIDKSKDMYNIDEFVDPAIPSNMTPISFRKFVDLAFMCLEDAGANRPTMGEVVKEIENIMEIDGLNSCAESRSTSVSHEGTSATFDHPYSEESLNRYNGVTNSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="115904" PGL_stop="114327"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115904" e_stop="115706"/>
            <exon e_start="115281" e_stop="115161"/>
            <exon e_start="114398" e_stop="114327"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.884"/>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="0.942"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.884">
            <gDNA_exon_boundary e_start="115904" e_stop="115706" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="115705" i_stop="115282" i_length="424"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="115281" e_stop="115161" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="115160" i_stop="114399" i_length="762"/>
          </intron>
          <exon e_serial="3" e_score="0.958">
            <gDNA_exon_boundary e_start="114398" e_stop="114327" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115904" stop="115706"/>
              <exon start="115281" stop="115161"/>
              <exon start="114398" stop="114327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476738" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTTCCCATTAGTCTTTTTTTTTTCTCTCTTCATTTTATTATATTTGTTGGCTTCTAAGAAGAAACTTAGTTTAATTTGCATGGTGGATTTAAACAATGGTCCAAACAAGAACAGTCCAACTGATTATCTTTTGTCTGCTTATTATTTCTATGCAAGTTTTGATTCAGCTGGAAGCTTCAACAGATTCTGGTGACT : ATGTTGTGTTAGAGTCACTGAAGGAAGAATGGGAAAACGTACCTCCAACTTGGGATGGGTCTGATCCTTGTGACGATCCATGGGAAGGAATCGACTGCAACAATTCACGTGTTATATCTAT : AAAATTATCAAGCATTAATCTGAAAGGAGAGCTATCTGGAGATATCGAAGGCTTGTCTGAATTGCAGATACT</gDNA_template>
            <first_frame> L  S  S  H  *  S  F  F  F  L  S  S  F  Y  Y  I  C  W  L  L  R  R  N  L  V  *  F  A  W  W  I  *  T  M  V  Q  T  R  T  V  Q  L  I  I  F  C  L  L  I  I  S  M  Q  V  L  I  Q  L  E  A  S  T  D  S  G  D   : Y  V  V  L  E  S  L  K  E  E  W  E  N  V  P  P  T  W  D  G  S  D  P  C  D  D  P  W  E  G  I  D  C  N  N  S  R  V  I  S  I :   K  L  S  S  I  N  L  K  G  E  L  S  G  D  I  E  G  L  S  E  L  Q  I   </first_frame>
            <second_frame>  F  L  P  I  S  L  F  F  F  S  L  H  F  I  I  F  V  G  F  *  E  E  T  *  F  N  L  H  G  G  F  K  Q  W  S  K  Q  E  Q  S  N  *  L  S  F  V  C  L  L  F  L  C  K  F  *  F  S  W  K  L  Q  Q  I  L  V  T  :  M  L  C  *  S  H  *  R  K  N  G  K  T  Y  L  Q  L  G  M  G  L  I  L  V  T  I  H  G  K  E  S  T  A  T  I  H  V  L  Y  L   : *  N  Y  Q  A  L  I  *  K  E  S  Y  L  E  I  S  K  A  C  L  N  C  R  Y  </second_frame>
            <third_frame>   F  F  P  L  V  F  F  F  S  L  F  I  L  L  Y  L  L  A  S  K  K  K  L  S  L  I  C  M  V  D  L  N  N  G  P  N  K  N  S  P  T  D  Y  L  L  S  A  Y  Y  F  Y  A  S  F  D  S  A  G  S  F  N  R  F  W  *  L :   C  C  V  R  V  T  E  G  R  M  G  K  R  T  S  N  L  G  W  V  *  S  L  *  R  S  M  G  R  N  R  L  Q  Q  F  T  C  Y  I  Y  :  K  I  I  K  H  *  S  E  R  R  A  I  W  R  Y  R  R  L  V  *  I  A  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115808" stop="115706"/>
                    <exon start="115281" stop="115161"/>
                    <exon start="114398" stop="114329"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMVQTRTVQLIIFCLLIISMQVLIQLEASTDSGDYVVLESLKEEWENVPPTWDGSDPCDDPWEGIDCNNSRVISIKLSSINLKGELSGDIEGLSELQI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="119977" PGL_stop="119289"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119977" e_stop="119289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="119977" e_stop="119289" e_length="689"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119977" stop="119289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTGAGATAGTTACAGGAAAAGTTCCTATTGAAAAAGGAAGATATATTGTCAGGGAAGTGAAGACTGCAATGGACAGATCAAAAGACATGTATAACCTTCAAGACATTTTGGATCCTGCAGTTCGCGCAGGTGCAACTCCTAGAAGTTTAGAGAAGTTTGTGGATTTAGCACTCAAATGTGTTGAAGAAGAAGGAGCCAACAGACCTTCAATGAGTGAAGTGGTGAAAGAGATCGAAAATATCATGGAGATGGCGGGACTGAACCCGAATGCAGACTCTGCATCTTCTTCAGCAACTTATGAAGGACCAAACAAAGGCATGAACCATCCATATACTGATGAAAGTCTCTTTGTGTATAGTGGAGCATATCCTAATTCAAAGGTAGAGCCGAAGTAAGATCAGTGTTATTATGGTTTTTCTTAGCTTGTGGAATTAAGATTGACACATAACATGCTTTGGCCTGTTATGTGTGTACAAATTTGAGAGAATGCAGAATGATTCAACTAATTTTGTCATTGGAGTAAATTACTGTACAACAGTGAAGATATTGAGTTTATTTATTTTTGGGAACATTTACTTTTACCTTCTGTAAAAACTGTGTAAACTTTTTTTTCTGATATCAATTAGGATGATCATTTGTATATGAGAATTCACATATTTTCATCCTAATATAAATTGTGCATTCAAT</gDNA_template>
            <first_frame> A  *  D  S  Y  R  K  S  S  Y  *  K  R  K  I  Y  C  Q  G  S  E  D  C  N  G  Q  I  K  R  H  V  *  P  S  R  H  F  G  S  C  S  S  R  R  C  N  S  *  K  F  R  E  V  C  G  F  S  T  Q  M  C  *  R  R  R  S  Q  Q  T  F  N  E  *  S  G  E  R  D  R  K  Y  H  G  D  G  G  T  E  P  E  C  R  L  C  I  F  F  S  N  L  *  R  T  K  Q  R  H  E  P  S  I  Y  *  *  K  S  L  C  V  *  W  S  I  S  *  F  K  G  R  A  E  V  R  S  V  L  L  W  F  F  L  A  C  G  I  K  I  D  T  *  H  A  L  A  C  Y  V  C  T  N  L  R  E  C  R  M  I  Q  L  I  L  S  L  E  *  I  T  V  Q  Q  *  R  Y  *  V  Y  L  F  L  G  T  F  T  F  T  F  C  K  N  C  V  N  F  F  F  *  Y  Q  L  G  *  S  F  V  Y  E  N  S  H  I  F  I  L  I  *  I  V  H  S   </first_frame>
            <second_frame>  L  E  I  V  T  G  K  V  P  I  E  K  G  R  Y  I  V  R  E  V  K  T  A  M  D  R  S  K  D  M  Y  N  L  Q  D  I  L  D  P  A  V  R  A  G  A  T  P  R  S  L  E  K  F  V  D  L  A  L  K  C  V  E  E  E  G  A  N  R  P  S  M  S  E  V  V  K  E  I  E  N  I  M  E  M  A  G  L  N  P  N  A  D  S  A  S  S  S  A  T  Y  E  G  P  N  K  G  M  N  H  P  Y  T  D  E  S  L  F  V  Y  S  G  A  Y  P  N  S  K  V  E  P  K  *  D  Q  C  Y  Y  G  F  S  *  L  V  E  L  R  L  T  H  N  M  L  W  P  V  M  C  V  Q  I  *  E  N  A  E  *  F  N  *  F  C  H  W  S  K  L  L  Y  N  S  E  D  I  E  F  I  Y  F  W  E  H  L  L  L  P  S  V  K  T  V  *  T  F  F  S  D  I  N  *  D  D  H  L  Y  M  R  I  H  I  F  S  S  *  Y  K  L  C  I  Q  </second_frame>
            <third_frame>   L  R  *  L  Q  E  K  F  L  L  K  K  E  D  I  L  S  G  K  *  R  L  Q  W  T  D  Q  K  T  C  I  T  F  K  T  F  W  I  L  Q  F  A  Q  V  Q  L  L  E  V  *  R  S  L  W  I  *  H  S  N  V  L  K  K  K  E  P  T  D  L  Q  *  V  K  W  *  K  R  S  K  I  S  W  R  W  R  D  *  T  R  M  Q  T  L  H  L  L  Q  Q  L  M  K  D  Q  T  K  A  *  T  I  H  I  L  M  K  V  S  L  C  I  V  E  H  I  L  I  Q  R  *  S  R  S  K  I  S  V  I  M  V  F  L  S  L  W  N  *  D  *  H  I  T  C  F  G  L  L  C  V  Y  K  F  E  R  M  Q  N  D  S  T  N  F  V  I  G  V  N  Y  C  T  T  V  K  I  L  S  L  F  I  F  G  N  I  Y  F  Y  L  L  *  K  L  C  K  L  F  F  L  I  S  I  R  M  I  I  C  I  *  E  F  T  Y  F  H  P  N  I  N  C  A  F  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119976" stop="119581"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEIVTGKVPIEKGRYIVREVKTAMDRSKDMYNLQDILDPAVRAGATPRSLEKFVDLALKCVEEEGANRPSMSEVVKEIENIMEMAGLNPNADSASSSATYEGPNKGMNHPYTDESLFVYSGAYPNSKVEPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="119364" PGL_stop="120056"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119364" e_stop="120056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="119364" e_stop="120056" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119364" stop="120056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAAAGTTTACACAGTTTTTACAGAAGGTAAAAGTAAATGTTCCCAAAAATAAATAAACTCAATATCTTCACTGTTGTACAGTAATTTACTCCAATGACAAAATTAGTTGAATCATTCTGCATTCTCTCAAATTTGTACACACATAACAGGCCAAAGCATGTTATGTGTCAATCTTAATTCCACAAGCTAAGAAAAACCATAATAACACTGATCTTACTTCGGCTCTACCTTTGAATTAGGATATGCTCCACTATACACAAAGAGACTTTCATCAGTATATGGATGGTTCATGCCTTTGTTTGGTCCTTCATAAGTTGCTGAAGAAGATGCAGAGTCTGCATTCGGGTTCAGTCCCGCCATCTCCATGATATTTTCGATCTCTTTCACCACTTCACTCATTGAAGGTCTGTTGGCTCCTTCTTCTTCAACACATTTGAGTGCTAAATCCACAAACTTCTCTAAACTTCTAGGAGTTGCACCTGCGCGAACTGCAGGATCCAAAATGTCTTGAAGGTTATACATGTCTTTTGATCTGTCCATTGCAGTCTTCACTTCCCTGACAATATATCTTCCTTTTTCAATAGGAACTTTTCCTGTAACTATCTCAAGCAGCACCACTCCGAAACTATAAACATCACTCTTCTCAGTCAGCTGGTTTGTCATGTAATATTCAGGATCCATGTATCCCT</gDNA_template>
            <first_frame> K  K  K  F  T  Q  F  L  Q  K  V  K  V  N  V  P  K  N  K  *  T  Q  Y  L  H  C  C  T  V  I  Y  S  N  D  K  I  S  *  I  I  L  H  S  L  K  F  V  H  T  *  Q  A  K  A  C  Y  V  S  I  L  I  P  Q  A  K  K  N  H  N  N  T  D  L  T  S  A  L  P  L  N  *  D  M  L  H  Y  T  Q  R  D  F  H  Q  Y  M  D  G  S  C  L  C  L  V  L  H  K  L  L  K  K  M  Q  S  L  H  S  G  S  V  P  P  S  P  *  Y  F  R  S  L  S  P  L  H  S  L  K  V  C  W  L  L  L  L  Q  H  I  *  V  L  N  P  Q  T  S  L  N  F  *  E  L  H  L  R  E  L  Q  D  P  K  C  L  E  G  Y  T  C  L  L  I  C  P  L  Q  S  S  L  P  *  Q  Y  I  F  L  F  Q  *  E  L  F  L  *  L  S  Q  A  A  P  L  R  N  Y  K  H  H  S  S  Q  S  A  G  L  S  C  N  I  Q  D  P  C  I  P </first_frame>
            <second_frame>  K  K  S  L  H  S  F  Y  R  R  *  K  *  M  F  P  K  I  N  K  L  N  I  F  T  V  V  Q  *  F  T  P  M  T  K  L  V  E  S  F  C  I  L  S  N  L  Y  T  H  N  R  P  K  H  V  M  C  Q  S  *  F  H  K  L  R  K  T  I  I  T  L  I  L  L  R  L  Y  L  *  I  R  I  C  S  T  I  H  K  E  T  F  I  S  I  W  M  V  H  A  F  V  W  S  F  I  S  C  *  R  R  C  R  V  C  I  R  V  Q  S  R  H  L  H  D  I  F  D  L  F  H  H  F  T  H  *  R  S  V  G  S  F  F  F  N  T  F  E  C  *  I  H  K  L  L  *  T  S  R  S  C  T  C  A  N  C  R  I  Q  N  V  L  K  V  I  H  V  F  *  S  V  H  C  S  L  H  F  P  D  N  I  S  S  F  F  N  R  N  F  S  C  N  Y  L  K  Q  H  H  S  E  T  I  N  I  T  L  L  S  Q  L  V  C  H  V  I  F  R  I  H  V  S   </second_frame>
            <third_frame>   K  K  V  Y  T  V  F  T  E  G  K  S  K  C  S  Q  K  *  I  N  S  I  S  S  L  L  Y  S  N  L  L  Q  *  Q  N  *  L  N  H  S  A  F  S  Q  I  C  T  H  I  T  G  Q  S  M  L  C  V  N  L  N  S  T  S  *  E  K  P  *  *  H  *  S  Y  F  G  S  T  F  E  L  G  Y  A  P  L  Y  T  K  R  L  S  S  V  Y  G  W  F  M  P  L  F  G  P  S  *  V  A  E  E  D  A  E  S  A  F  G  F  S  P  A  I  S  M  I  F  S  I  S  F  T  T  S  L  I  E  G  L  L  A  P  S  S  S  T  H  L  S  A  K  S  T  N  F  S  K  L  L  G  V  A  P  A  R  T  A  G  S  K  M  S  *  R  L  Y  M  S  F  D  L  S  I  A  V  F  T  S  L  T  I  Y  L  P  F  S  I  G  T  F  P  V  T  I  S  S  S  T  T  P  K  L  *  T  S  L  F  S  V  S  W  F  V  M  *  Y  S  G  S  M  Y  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119681" stop="119878"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAEEDAESAFGFSPAISMIFSISFTTSLIEGLLAPSSSTHLSAKSTNFSKLLGVAPARTAGSKMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="122254" PGL_stop="120336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121441" e_stop="121232"/>
            <exon e_start="121146" e_stop="121010"/>
            <exon e_start="120836" e_stop="120617"/>
            <exon e_start="120511" e_stop="120336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.971"/>
          <exon-intron don_prob="0.000" acc_prob="0.896" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="121441" e_stop="121232" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121231" i_stop="121147" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121146" e_stop="121010" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.896">
            <gDNA_intron_boundary i_start="121009" i_stop="120837" i_length="173"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120836" e_stop="120617" e_length="220"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="120616" i_stop="120512" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="120511" e_stop="120336" e_length="176"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121441" stop="121232"/>
              <exon start="121146" stop="121010"/>
              <exon start="120836" stop="120617"/>
              <exon start="120511" stop="120336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121441" stop="121232"/>
              <exon start="121146" stop="121010"/>
              <exon start="120836" stop="120637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121251" stop="121232"/>
              <exon start="121146" stop="121010"/>
              <exon start="120836" stop="120617"/>
              <exon start="120511" stop="120400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301013" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGAAGTTGATAGTTAAGAAGTCTGAGTCTATGTATATGCTGTTCTCCAGGGGCATCCTCCGAATCAAAAAACTCAAGCAGTACAGGCATTATTATTGGAGCGGCAGTTGGTGGCTCTGTCATTGCAATTATAGCACTAATCATTGGAGTTTATGCTTTCCGGCAAAAGAAAAGAGCTGAAGATGCTGCAAAGAGGAGCGATCCTTTTG : CATCCTGGGACTCGAACAAACATAGTGGTGCTGTACCACAGCTGACGGGAGCTAGATTTTTCTCATTTGAGGAGCTCAAAAAATGGACCAATAATTTTTCAGAAACCAATGATATTGGTTGTGGTGGTTATGGAAAG : GTTTACAGAGGAACTCTTCCAAATGGAGAATTGGTTGCAATTAAAAGAGCTCTACAAGGGTCTATGCAGGGTGCACACGAGTTCAAAACTGAGATAGAGCTTCTCTCAAGGGTTCATCACAAGAACGTCGTTGGCCTTGCTGGCTTTTGTTTCGATCAAGCTGAACAGATGCTTGTGTACGAGTACATTCCTAATGGCACCTTAAAAGACGGTCTTTCAG : GCAAGACTGGCATCAGGTTAGATTGGATGAGGAGACTGAGGATAGCCGTTGGAGCAGCCAGAGGTTTGCAGTATTTGCATGACCTTGTCAATCCTCCCATCATACACAGGGACATCAAATCCAATAATATTTTGCTGGATGATCGCCTAAACGCAAGAGTTGCTGATTTTGGCCTG</gDNA_template>
            <first_frame> S  E  V  D  S  *  E  V  *  V  Y  V  Y  A  V  L  Q  G  H  P  P  N  Q  K  T  Q  A  V  Q  A  L  L  L  E  R  Q  L  V  A  L  S  L  Q  L  *  H  *  S  L  E  F  M  L  S  G  K  R  K  E  L  K  M  L  Q  R  G  A  I  L  L  :  H  P  G  T  R  T  N  I  V  V  L  Y  H  S  *  R  E  L  D  F  S  H  L  R  S  S  K  N  G  P  I  I  F  Q  K  P  M  I  L  V  V  V  V  M  E  R :   F  T  E  E  L  F  Q  M  E  N  W  L  Q  L  K  E  L  Y  K  G  L  C  R  V  H  T  S  S  K  L  R  *  S  F  S  Q  G  F  I  T  R  T  S  L  A  L  L  A  F  V  S  I  K  L  N  R  C  L  C  T  S  T  F  L  M  A  P  *  K  T  V  F  Q  :  A  R  L  A  S  G  *  I  G  *  G  D  *  G  *  P  L  E  Q  P  E  V  C  S  I  C  M  T  L  S  I  L  P  S  Y  T  G  T  S  N  P  I  I  F  C  W  M  I  A  *  T  Q  E  L  L  I  L  A   </first_frame>
            <second_frame>  V  K  L  I  V  K  K  S  E  S  M  Y  M  L  F  S  R  G  I  L  R  I  K  K  L  K  Q  Y  R  H  Y  Y  W  S  G  S  W  W  L  C  H  C  N  Y  S  T  N  H  W  S  L  C  F  P  A  K  E  K  S  *  R  C  C  K  E  E  R  S  F  C :   I  L  G  L  E  Q  T  *  W  C  C  T  T  A  D  G  S  *  I  F  L  I  *  G  A  Q  K  M  D  Q  *  F  F  R  N  Q  *  Y  W  L  W  W  L  W  K   : G  L  Q  R  N  S  S  K  W  R  I  G  C  N  *  K  S  S  T  R  V  Y  A  G  C  T  R  V  Q  N  *  D  R  A  S  L  K  G  S  S  Q  E  R  R  W  P  C  W  L  L  F  R  S  S  *  T  D  A  C  V  R  V  H  S  *  W  H  L  K  R  R  S  F  R :   Q  D  W  H  Q  V  R  L  D  E  E  T  E  D  S  R  W  S  S  Q  R  F  A  V  F  A  *  P  C  Q  S  S  H  H  T  Q  G  H  Q  I  Q  *  Y  F  A  G  *  S  P  K  R  K  S  C  *  F  W  P  </second_frame>
            <third_frame>   *  S  *  *  L  R  S  L  S  L  C  I  C  C  S  P  G  A  S  S  E  S  K  N  S  S  S  T  G  I  I  I  G  A  A  V  G  G  S  V  I  A  I  I  A  L  I  I  G  V  Y  A  F  R  Q  K  K  R  A  E  D  A  A  K  R  S  D  P  F   : A  S  W  D  S  N  K  H  S  G  A  V  P  Q  L  T  G  A  R  F  F  S  F  E  E  L  K  K  W  T  N  N  F  S  E  T  N  D  I  G  C  G  G  Y  G  K  :  V  Y  R  G  T  L  P  N  G  E  L  V  A  I  K  R  A  L  Q  G  S  M  Q  G  A  H  E  F  K  T  E  I  E  L  L  S  R  V  H  H  K  N  V  V  G  L  A  G  F  C  F  D  Q  A  E  Q  M  L  V  Y  E  Y  I  P  N  G  T  L  K  D  G  L  S   : G  K  T  G  I  R  L  D  W  M  R  R  L  R  I  A  V  G  A  A  R  G  L  Q  Y  L  H  D  L  V  N  P  P  I  I  H  R  D  I  K  S  N  N  I  L  L  D  D  R  L  N  A  R  V  A  D  F  G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121427" stop="121232"/>
                    <exon start="121146" stop="121010"/>
                    <exon start="120836" stop="120617"/>
                    <exon start="120511" stop="120336"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRSLSLCICCSPGASSESKNSSSTGIIIGAAVGGSVIAIIALIIGVYAFRQKKRAEDAAKRSDPFASWDSNKHSGAVPQLTGARFFSFEELKKWTNNFSETNDIGCGGYGKVYRGTLPNGELVAIKRALQGSMQGAHEFKTEIELLSRVHHKNVVGLAGFCFDQAEQMLVYEYIPNGTLKDGLSGKTGIRLDWMRRLRIAVGAARGLQYLHDLVNPPIIHRDIKSNNILLDDRLNARVADFGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="122254" e_stop="122184"/>
            <exon e_start="122037" e_stop="121556"/>
            <exon e_start="121390" e_stop="121232"/>
            <exon e_start="121146" e_stop="121004"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.980" e_score="0.998"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122254" e_stop="122184" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122183" i_stop="122038" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="122037" e_stop="121556" e_length="482"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.980">
            <gDNA_intron_boundary i_start="121555" i_stop="121391" i_length="165"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121390" e_stop="121232" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121231" i_stop="121147" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="121146" e_stop="121004" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122254" stop="122184"/>
              <exon start="122037" stop="121602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121809" stop="121556"/>
              <exon start="121390" stop="121232"/>
              <exon start="121146" stop="121004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTCATTGATGTGCAAAGAAATCTTATTGAATCATTTACTCAAAGACCAGGGTACCCCTTTCAGATAAT : GCTTGCAGGTAATCCTTTTTGCAACGAAGGAGGAGATGGGACACAAGATTACTGTGTCAAAACTCAACAAACTGAGACATATTCAACCCCACCAGAGAATTGCTTGCCAACTGACTGCAGCTCTAATCGAGTTTCTAGTCCTACCTGTAAATGTGCTTTTCCATATACAGGAAACATAGTCTTCAGAGCTCCTTCCTTTTCAAACTTGGGAAATAGAACTACTTATGAGACTCTCCAAAAGTCCTTGATGCAAACCTTTCAAAACCGTCAACTGCCCGTGGAATCAGTTTCCCTCAGTAACCCAACAAAAAATTTGGATGACTACCTTGTAATACACCTGCAAGTTTTTCCATCTACCCAAGATTTTTTCAATCGAACTGGAGTTTCTGGAATAGGTTTTGTGCTTAGTAATCAGACTTTCAAGCCCCCATCATCATTTGGACCTTTCTTCTTCATTGGTGAAGGCTATAAATACTTTGACG : GGGCATCCTCCGAATCAAAAAACTCAAGCAGTACAGGCATTATTATTGGAGCGGCAGTTGGTGGCTCTGTCATTGCAATTATAGCACTAATCATTGGAGTTTATGCTTTCCGGCAAAAGAAAAGAGCTGAAGATGCTGCAAAGAGGAGCGATCCTTTTG : CATCCTGGGACTCGAACAAACATAGTGGTGCTGTACCACAGCTGACGGGAGCTAGATTTTTCTCATTTGAGGAGCTCAAAAAATGGACCAATAATTTTTCAGAAACCAATGATATTGGTTGTGGTGGTTATGGAAAGGTTAGC</gDNA_template>
            <first_frame> Q  L  I  D  V  Q  R  N  L  I  E  S  F  T  Q  R  P  G  Y  P  F  Q  I  M :   L  A  G  N  P  F  C  N  E  G  G  D  G  T  Q  D  Y  C  V  K  T  Q  Q  T  E  T  Y  S  T  P  P  E  N  C  L  P  T  D  C  S  S  N  R  V  S  S  P  T  C  K  C  A  F  P  Y  T  G  N  I  V  F  R  A  P  S  F  S  N  L  G  N  R  T  T  Y  E  T  L  Q  K  S  L  M  Q  T  F  Q  N  R  Q  L  P  V  E  S  V  S  L  S  N  P  T  K  N  L  D  D  Y  L  V  I  H  L  Q  V  F  P  S  T  Q  D  F  F  N  R  T  G  V  S  G  I  G  F  V  L  S  N  Q  T  F  K  P  P  S  S  F  G  P  F  F  F  I  G  E  G  Y  K  Y  F  D   : G  A  S  S  E  S  K  N  S  S  S  T  G  I  I  I  G  A  A  V  G  G  S  V  I  A  I  I  A  L  I  I  G  V  Y  A  F  R  Q  K  K  R  A  E  D  A  A  K  R  S  D  P  F   : A  S  W  D  S  N  K  H  S  G  A  V  P  Q  L  T  G  A  R  F  F  S  F  E  E  L  K  K  W  T  N  N  F  S  E  T  N  D  I  G  C  G  G  Y  G  K  V  S </first_frame>
            <second_frame>  S  S  L  M  C  K  E  I  L  L  N  H  L  L  K  D  Q  G  T  P  F  R  *   : C  L  Q  V  I  L  F  A  T  K  E  E  M  G  H  K  I  T  V  S  K  L  N  K  L  R  H  I  Q  P  H  Q  R  I  A  C  Q  L  T  A  A  L  I  E  F  L  V  L  P  V  N  V  L  F  H  I  Q  E  T  *  S  S  E  L  L  P  F  Q  T  W  E  I  E  L  L  M  R  L  S  K  S  P  *  C  K  P  F  K  T  V  N  C  P  W  N  Q  F  P  S  V  T  Q  Q  K  I  W  M  T  T  L  *  Y  T  C  K  F  F  H  L  P  K  I  F  S  I  E  L  E  F  L  E  *  V  L  C  L  V  I  R  L  S  S  P  H  H  H  L  D  L  S  S  S  L  V  K  A  I  N  T  L  T  :  G  H  P  P  N  Q  K  T  Q  A  V  Q  A  L  L  L  E  R  Q  L  V  A  L  S  L  Q  L  *  H  *  S  L  E  F  M  L  S  G  K  R  K  E  L  K  M  L  Q  R  G  A  I  L  L  :  H  P  G  T  R  T  N  I  V  V  L  Y  H  S  *  R  E  L  D  F  S  H  L  R  S  S  K  N  G  P  I  I  F  Q  K  P  M  I  L  V  V  V  V  M  E  R  L   </second_frame>
            <third_frame>   A  H  *  C  A  K  K  S  Y  *  I  I  Y  S  K  T  R  V  P  L  S  D  N  :  A  C  R  *  S  F  L  Q  R  R  R  R  W  D  T  R  L  L  C  Q  N  S  T  N  *  D  I  F  N  P  T  R  E  L  L  A  N  *  L  Q  L  *  S  S  F  *  S  Y  L  *  M  C  F  S  I  Y  R  K  H  S  L  Q  S  S  F  L  F  K  L  G  K  *  N  Y  L  *  D  S  P  K  V  L  D  A  N  L  S  K  P  S  T  A  R  G  I  S  F  P  Q  *  P  N  K  K  F  G  *  L  P  C  N  T  P  A  S  F  S  I  Y  P  R  F  F  Q  S  N  W  S  F  W  N  R  F  C  A  *  *  S  D  F  Q  A  P  I  I  I  W  T  F  L  L  H  W  *  R  L  *  I  L  *  R :   G  I  L  R  I  K  K  L  K  Q  Y  R  H  Y  Y  W  S  G  S  W  W  L  C  H  C  N  Y  S  T  N  H  W  S  L  C  F  P  A  K  E  K  S  *  R  C  C  K  E  E  R  S  F  C :   I  L  G  L  E  Q  T  *  W  C  C  T  T  A  D  G  S  *  I  F  L  I  *  G  A  Q  K  M  D  Q  *  F  F  R  N  Q  *  Y  W  L  W  W  L  W  K  G  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122254" stop="122184"/>
                    <exon start="122037" stop="121556"/>
                    <exon start="121390" stop="121232"/>
                    <exon start="121146" stop="121004"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLIDVQRNLIESFTQRPGYPFQIMLAGNPFCNEGGDGTQDYCVKTQQTETYSTPPENCLPTDCSSNRVSSPTCKCAFPYTGNIVFRAPSFSNLGNRTTYETLQKSLMQTFQNRQLPVESVSLSNPTKNLDDYLVIHLQVFPSTQDFFNRTGVSGIGFVLSNQTFKPPSSFGPFFFIGEGYKYFDGASSESKNSSSTGIIIGAAVGGSVIAIIALIIGVYAFRQKKRAEDAAKRSDPFASWDSNKHSGAVPQLTGARFFSFEELKKWTNNFSETNDIGCGGYGKVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="124546" PGL_stop="122745"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124546" e_stop="124489"/>
            <exon e_start="124400" e_stop="124329"/>
            <exon e_start="123786" e_stop="123625"/>
            <exon e_start="123552" e_stop="123478"/>
            <exon e_start="123356" e_stop="123285"/>
            <exon e_start="123179" e_stop="123108"/>
            <exon e_start="123022" e_stop="122954"/>
            <exon e_start="122815" e_stop="122745"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.994" e_score="0.983"/>
          <exon-intron don_prob="0.981" acc_prob="0.952" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.969"/>
          <exon-intron don_prob="0.989" acc_prob="0.944" e_score="0.960"/>
          <exon-intron don_prob="0.997" acc_prob="0.462" e_score="0.958"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="0.972"/>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="0.971"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="124546" e_stop="124489" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.994">
            <gDNA_intron_boundary i_start="124488" i_stop="124401" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="124400" e_stop="124329" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.952">
            <gDNA_intron_boundary i_start="124328" i_stop="123787" i_length="542"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="123786" e_stop="123625" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="123624" i_stop="123553" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="0.960">
            <gDNA_exon_boundary e_start="123552" e_stop="123478" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.944">
            <gDNA_intron_boundary i_start="123477" i_stop="123357" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="0.958">
            <gDNA_exon_boundary e_start="123356" e_stop="123285" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.462">
            <gDNA_intron_boundary i_start="123284" i_stop="123180" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="0.972">
            <gDNA_exon_boundary e_start="123179" e_stop="123108" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="123107" i_stop="123023" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="0.971">
            <gDNA_exon_boundary e_start="123022" e_stop="122954" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="122953" i_stop="122816" i_length="138"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="122815" e_stop="122745" e_length="71"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124546" stop="124489"/>
              <exon start="124400" stop="124329"/>
              <exon start="123786" stop="123625"/>
              <exon start="123552" stop="123478"/>
              <exon start="123356" stop="123285"/>
              <exon start="123179" stop="123108"/>
              <exon start="123022" stop="122954"/>
              <exon start="122815" stop="122745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124546" stop="124489"/>
              <exon start="124400" stop="124329"/>
              <exon start="123786" stop="123625"/>
              <exon start="123552" stop="123479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAGTTGAAAGGATCTCTTCCTCAGTCTATTGGAAAATTGACAAAGCTATCAAATTT : GATCCTTGTTGGTTGTGGATTTTCGGGACCAATACCAGACACCATAGGATCTCTGACCCGGCTGGTTTTTCT : ATCTTTGAACTCTAACAACTTTATTGGAGGAATACCTGCTACCGTTGGCTATCTGACAGAGCTTTATTGGCTGGATTTAGCTGACAATAAGCTTACAGGAACAATTCCAGTCTCTAATGGGAGCAGTCCTGGTCTTGATTTGCTTGTTCACACTAAACACTT : TCACTTTGGGAAGAATCAGCTATCCGGTGAAATTCCAGCTGGTCTTTTCCATTCTAATCTGTCCCTTATACATCT : GCTAGTTGAGAACAACAAGTTTACTGGAAACATCCCGGATACATTAGGACTTGTCCAGACGATGGAAGTGCT : TCGTCTTGACAGGAATTCACTTAGTGGATCTGTGCCACAAAATCTCAACAATCTCACACACGTCAATGAACT : ACACATGTCGAACAATAATTTTAATGGTCTTTTGCCGAATCTTACTGGCATGAATGTCCTCAACTACTT : GGACATGAGCAATAATTCATTTAATGCTTCAGATTTTCCATCATGGATCCCGAACCTGATATCTTTAACAT</gDNA_template>
            <first_frame> R  S  *  K  D  L  F  L  S  L  L  E  N  *  Q  S  Y  Q  I   : *  S  L  L  V  V  D  F  R  D  Q  Y  Q  T  P  *  D  L  *  P  G  W  F  F   : Y  L  *  T  L  T  T  L  L  E  E  Y  L  L  P  L  A  I  *  Q  S  F  I  G  W  I  *  L  T  I  S  L  Q  E  Q  F  Q  S  L  M  G  A  V  L  V  L  I  C  L  F  T  L  N  T   : F  T  L  G  R  I  S  Y  P  V  K  F  Q  L  V  F  S  I  L  I  C  P  L  Y  I   : C  *  L  R  T  T  S  L  L  E  T  S  R  I  H  *  D  L  S  R  R  W  K  C   : F  V  L  T  G  I  H  L  V  D  L  C  H  K  I  S  T  I  S  H  T  S  M  N   : Y  T  C  R  T  I  I  L  M  V  F  C  R  I  L  L  A  *  M  S  S  T  T   : W  T  *  A  I  I  H  L  M  L  Q  I  F  H  H  G  S  R  T  *  Y  L  *  H </first_frame>
            <second_frame>  G  V  E  R  I  S  S  S  V  Y  W  K  I  D  K  A  I  K  F  :  D  P  C  W  L  W  I  F  G  T  N  T  R  H  H  R  I  S  D  P  A  G  F  S  :  I  F  E  L  *  Q  L  Y  W  R  N  T  C  Y  R  W  L  S  D  R  A  L  L  A  G  F  S  *  Q  *  A  Y  R  N  N  S  S  L  *  W  E  Q  S  W  S  *  F  A  C  S  H  *  T  L  :  S  L  W  E  E  S  A  I  R  *  N  S  S  W  S  F  P  F  *  S  V  P  Y  T  S  :  A  S  *  E  Q  Q  V  Y  W  K  H  P  G  Y  I  R  T  C  P  D  D  G  S  A  :  S  S  *  Q  E  F  T  *  W  I  C  A  T  K  S  Q  Q  S  H  T  R  Q  *  T  :  T  H  V  E  Q  *  F  *  W  S  F  A  E  S  Y  W  H  E  C  P  Q  L  L  :  G  H  E  Q  *  F  I  *  C  F  R  F  S  I  M  D  P  E  P  D  I  F  N   </second_frame>
            <third_frame>   E  L  K  G  S  L  P  Q  S  I  G  K  L  T  K  L  S  N  L :   I  L  V  G  C  G  F  S  G  P  I  P  D  T  I  G  S  L  T  R  L  V  F  L :   S  L  N  S  N  N  F  I  G  G  I  P  A  T  V  G  Y  L  T  E  L  Y  W  L  D  L  A  D  N  K  L  T  G  T  I  P  V  S  N  G  S  S  P  G  L  D  L  L  V  H  T  K  H  F :   H  F  G  K  N  Q  L  S  G  E  I  P  A  G  L  F  H  S  N  L  S  L  I  H  L :   L  V  E  N  N  K  F  T  G  N  I  P  D  T  L  G  L  V  Q  T  M  E  V  L :   R  L  D  R  N  S  L  S  G  S  V  P  Q  N  L  N  N  L  T  H  V  N  E  L :   H  M  S  N  N  N  F  N  G  L  L  P  N  L  T  G  M  N  V  L  N  Y  L :   D  M  S  N  N  S  F  N  A  S  D  F  P  S  W  I  P  N  L  I  S  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124544" stop="124489"/>
                    <exon start="124400" stop="124329"/>
                    <exon start="123786" stop="123625"/>
                    <exon start="123552" stop="123478"/>
                    <exon start="123356" stop="123285"/>
                    <exon start="123179" stop="123108"/>
                    <exon start="123022" stop="122954"/>
                    <exon start="122815" stop="122746"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELKGSLPQSIGKLTKLSNLILVGCGFSGPIPDTIGSLTRLVFLSLNSNNFIGGIPATVGYLTELYWLDLADNKLTGTIPVSNGSSPGLDLLVHTKHFHFGKNQLSGEIPAGLFHSNLSLIHLLVENNKFTGNIPDTLGLVQTMEVLRLDRNSLSGSVPQNLNNLTHVNELHMSNNNFNGLLPNLTGMNVLNYLDMSNNSFNASDFPSWIPNLISLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="133851" PGL_stop="133233"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133851" e_stop="133233"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="133851" e_stop="133233" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133851" stop="133233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTATTTTGAGAGCAAAAAGTGCAGTGACTGTCCCATAGATGAACCAACAAAGATTGGTGGAGAGCCTCCAACAATTCCGCCACATTTTGAAAACATGCATAGCCCAGAGAGACCTCTTTACCGGCAAATCTCTGCATACGCTTTACATCAAAGCACTCATTCCACCGTCTACTTACTTCTCCAACCATTTCATCCTTCTCTATTCTAAGTGTGGCCTTCTTACCGCTGCTCGCAGGGCTTTTGAAGCTACCCCTGAACCCAATGTTTTTTCCTTCAATGCTATCCTCAATGCATATGCTAAAGAAGCTCAGCCTCATCTTGCCCACCAGCTGTTTGATAAAATTCCCCAACCGGATATTGTTTCTTACAACACCCTTATATCTGCTTATGCTGATCTTGGTTACACCCTGCCTGCTCTTCGGCTCTTTCTTGATTTGAAGGACACGGGTCTTGTTATGGATGGATTTACTCTTTCAGCTGCTATCACGGCTGCTAATGACAATGTTGATTTCATTACTCAGCTTCACTCATTGTCTATATCTGCTGGGCTTGACTCTTATGCTTCTGTTAATAATACTCTCATCACGTATTATGGCAAAAATGGGCATCTTGATTATG</gDNA_template>
            <first_frame> V  I  L  R  A  K  S  A  V  T  V  P  *  M  N  Q  Q  R  L  V  E  S  L  Q  Q  F  R  H  I  L  K  T  C  I  A  Q  R  D  L  F  T  G  K  S  L  H  T  L  Y  I  K  A  L  I  P  P  S  T  Y  F  S  N  H  F  I  L  L  Y  S  K  C  G  L  L  T  A  A  R  R  A  F  E  A  T  P  E  P  N  V  F  S  F  N  A  I  L  N  A  Y  A  K  E  A  Q  P  H  L  A  H  Q  L  F  D  K  I  P  Q  P  D  I  V  S  Y  N  T  L  I  S  A  Y  A  D  L  G  Y  T  L  P  A  L  R  L  F  L  D  L  K  D  T  G  L  V  M  D  G  F  T  L  S  A  A  I  T  A  A  N  D  N  V  D  F  I  T  Q  L  H  S  L  S  I  S  A  G  L  D  S  Y  A  S  V  N  N  T  L  I  T  Y  Y  G  K  N  G  H  L  D  Y  </first_frame>
            <second_frame>  L  F  *  E  Q  K  V  Q  *  L  S  H  R  *  T  N  K  D  W  W  R  A  S  N  N  S  A  T  F  *  K  H  A  *  P  R  E  T  S  L  P  A  N  L  C  I  R  F  T  S  K  H  S  F  H  R  L  L  T  S  P  T  I  S  S  F  S  I  L  S  V  A  F  L  P  L  L  A  G  L  L  K  L  P  L  N  P  M  F  F  P  S  M  L  S  S  M  H  M  L  K  K  L  S  L  I  L  P  T  S  C  L  I  K  F  P  N  R  I  L  F  L  T  T  P  L  Y  L  L  M  L  I  L  V  T  P  C  L  L  F  G  S  F  L  I  *  R  T  R  V  L  L  W  M  D  L  L  F  Q  L  L  S  R  L  L  M  T  M  L  I  S  L  L  S  F  T  H  C  L  Y  L  L  G  L  T  L  M  L  L  L  I  I  L  S  S  R  I  M  A  K  M  G  I  L  I  M </second_frame>
            <third_frame>   Y  F  E  S  K  K  C  S  D  C  P  I  D  E  P  T  K  I  G  G  E  P  P  T  I  P  P  H  F  E  N  M  H  S  P  E  R  P  L  Y  R  Q  I  S  A  Y  A  L  H  Q  S  T  H  S  T  V  Y  L  L  L  Q  P  F  H  P  S  L  F  *  V  W  P  S  Y  R  C  S  Q  G  F  *  S  Y  P  *  T  Q  C  F  F  L  Q  C  Y  P  Q  C  I  C  *  R  S  S  A  S  S  C  P  P  A  V  *  *  N  S  P  T  G  Y  C  F  L  Q  H  P  Y  I  C  L  C  *  S  W  L  H  P  A  C  S  S  A  L  S  *  F  E  G  H  G  S  C  Y  G  W  I  Y  S  F  S  C  Y  H  G  C  *  *  Q  C  *  F  H  Y  S  A  S  L  I  V  Y  I  C  W  A  *  L  L  C  F  C  *  *  Y  S  H  H  V  L  W  Q  K  W  A  S  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133812" stop="133234"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNQQRLVESLQQFRHILKTCIAQRDLFTGKSLHTLYIKALIPPSTYFSNHFILLYSKCGLLTAARRAFEATPEPNVFSFNAILNAYAKEAQPHLAHQLFDKIPQPDIVSYNTLISAYADLGYTLPALRLFLDLKDTGLVMDGFTLSAAITAANDNVDFITQLHSLSISAGLDSYASVNNTLITYYGKNGHLDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="135353" PGL_stop="134145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135353" e_stop="135261"/>
            <exon e_start="134938" e_stop="134208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.480" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135353" e_stop="135261" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.480">
            <gDNA_intron_boundary i_start="135260" i_stop="134939" i_length="322"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="134938" e_stop="134208" e_length="731"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135353" stop="135261"/>
              <exon start="134938" stop="134208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135352" stop="135261"/>
              <exon start="134938" stop="134520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTAACTGCAAAAGTTGCTGATTTTGGCCTATCAAAACTTTTGAGAGACGAAGACAAGGGCCATGTCACCACTCAAGTCAAAGGTACATTG : GGATATTTGGATCCTGAATATTACATGAGCCAACAGTTGACTGAGAAAAGTGATGTATATAGCTTTGGGGTGGTGCTGCTCGAGCTGATTACTGCAAGAGCTCCAATAGAACGAGGAAAACACATCGTGAGATTGGTTGCAGAGACCATATATGATTCAAAAGATAACAGCAAACTCTACCAATTAATTGATCCAAGAATAGGTCCAGGTTCAAAACTCGAAGGTGTTGATAGATTATTCACATTGGGAATGAGATGTGTAAATGAATCCGGGGCTGAGAGGCCTTCCATGGGAGAGGCTGTGAAAGAAATTGAGAGTATTCTTGGACTGGCCAGCTTGAGCAAGTATACTGAAGGCGACCTCACTTCGTCTAGCTACGAGGACACAACTCAAGTCAGTCTTGACGATTTTTATAATGACAAGGCTTTTGATTACAGTGGTAAATTCCCTTCTGGTGGCATGAACACCACTTATTGAAACTACCAACGACTATAAATTTGAGTTACATAAGTTTGTTATTATTGAGCATATGATGACTATGAATTACATTTCGTTTGATTGTTTATTACTAGTGATGCTTCTGCTCTAATACTAGCTATTTCAGAAGTCAGAATTACAAATGGCTTCTTCAGATTAAGTGATCTTCATATTGATGTTTGATCGATATAAAGTAAGATCATATACTGTACAGGACTACAGATGAGTTTTATAGCTCAAAACTCTAAACTGTA</gDNA_template>
            <first_frame> H  L  T  A  K  V  A  D  F  G  L  S  K  L  L  R  D  E  D  K  G  H  V  T  T  Q  V  K  G  T  L  :  G  Y  L  D  P  E  Y  Y  M  S  Q  Q  L  T  E  K  S  D  V  Y  S  F  G  V  V  L  L  E  L  I  T  A  R  A  P  I  E  R  G  K  H  I  V  R  L  V  A  E  T  I  Y  D  S  K  D  N  S  K  L  Y  Q  L  I  D  P  R  I  G  P  G  S  K  L  E  G  V  D  R  L  F  T  L  G  M  R  C  V  N  E  S  G  A  E  R  P  S  M  G  E  A  V  K  E  I  E  S  I  L  G  L  A  S  L  S  K  Y  T  E  G  D  L  T  S  S  S  Y  E  D  T  T  Q  V  S  L  D  D  F  Y  N  D  K  A  F  D  Y  S  G  K  F  P  S  G  G  M  N  T  T  Y  *  N  Y  Q  R  L  *  I  *  V  T  *  V  C  Y  Y  *  A  Y  D  D  Y  E  L  H  F  V  *  L  F  I  T  S  D  A  S  A  L  I  L  A  I  S  E  V  R  I  T  N  G  F  F  R  L  S  D  L  H  I  D  V  *  S  I  *  S  K  I  I  Y  C  T  G  L  Q  M  S  F  I  A  Q  N  S  K  L   </first_frame>
            <second_frame>  I  *  L  Q  K  L  L  I  L  A  Y  Q  N  F  *  E  T  K  T  R  A  M  S  P  L  K  S  K  V  H  W :   D  I  W  I  L  N  I  T  *  A  N  S  *  L  R  K  V  M  Y  I  A  L  G  W  C  C  S  S  *  L  L  Q  E  L  Q  *  N  E  E  N  T  S  *  D  W  L  Q  R  P  Y  M  I  Q  K  I  T  A  N  S  T  N  *  L  I  Q  E  *  V  Q  V  Q  N  S  K  V  L  I  D  Y  S  H  W  E  *  D  V  *  M  N  P  G  L  R  G  L  P  W  E  R  L  *  K  K  L  R  V  F  L  D  W  P  A  *  A  S  I  L  K  A  T  S  L  R  L  A  T  R  T  Q  L  K  S  V  L  T  I  F  I  M  T  R  L  L  I  T  V  V  N  S  L  L  V  A  *  T  P  L  I  E  T  T  N  D  Y  K  F  E  L  H  K  F  V  I  I  E  H  M  M  T  M  N  Y  I  S  F  D  C  L  L  L  V  M  L  L  L  *  Y  *  L  F  Q  K  S  E  L  Q  M  A  S  S  D  *  V  I  F  I  L  M  F  D  R  Y  K  V  R  S  Y  T  V  Q  D  Y  R  *  V  L  *  L  K  T  L  N  C  </second_frame>
            <third_frame>   F  N  C  K  S  C  *  F  W  P  I  K  T  F  E  R  R  R  Q  G  P  C  H  H  S  S  Q  R  Y  I   : G  I  F  G  S  *  I  L  H  E  P  T  V  D  *  E  K  *  C  I  *  L  W  G  G  A  A  R  A  D  Y  C  K  S  S  N  R  T  R  K  T  H  R  E  I  G  C  R  D  H  I  *  F  K  R  *  Q  Q  T  L  P  I  N  *  S  K  N  R  S  R  F  K  T  R  R  C  *  *  I  I  H  I  G  N  E  M  C  K  *  I  R  G  *  E  A  F  H  G  R  G  C  E  R  N  *  E  Y  S  W  T  G  Q  L  E  Q  V  Y  *  R  R  P  H  F  V  *  L  R  G  H  N  S  S  Q  S  *  R  F  L  *  *  Q  G  F  *  L  Q  W  *  I  P  F  W  W  H  E  H  H  L  L  K  L  P  T  T  I  N  L  S  Y  I  S  L  L  L  L  S  I  *  *  L  *  I  T  F  R  L  I  V  Y  Y  *  *  C  F  C  S  N  T  S  Y  F  R  S  Q  N  Y  K  W  L  L  Q  I  K  *  S  S  Y  *  C  L  I  D  I  K  *  D  H  I  L  Y  R  T  T  D  E  F  Y  S  S  K  L  *  T  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135353" stop="135261"/>
                    <exon start="134938" stop="134462"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLTAKVADFGLSKLLRDEDKGHVTTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVVLLELITARAPIERGKHIVRLVAETIYDSKDNSKLYQLIDPRIGPGSKLEGVDRLFTLGMRCVNESGAERPSMGEAVKEIESILGLASLSKYTEGDLTSSSYEDTTQVSLDDFYNDKAFDYSGKFPSGGMNTTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="135016" e_stop="135006"/>
            <exon e_start="134938" e_stop="134145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.063" acc_prob="0.480" e_score="0.727"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.727">
            <gDNA_exon_boundary e_start="135016" e_stop="135006" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.063" acc_prob="0.480">
            <gDNA_intron_boundary i_start="135005" i_stop="134939" i_length="67"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134938" e_stop="134145" e_length="794"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135016" stop="135006"/>
              <exon start="134938" stop="134145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAACATTT : GGATATTTGGATCCTGAATATTACATGAGCCAACAGTTGACTGAGAAAAGTGATGTATATAGCTTTGGGGTGGTGCTGCTCGAGCTGATTACTGCAAGAGCTCCAATAGAACGAGGAAAACACATCGTGAGATTGGTTGCAGAGACCATATATGATTCAAAAGATAACAGCAAACTCTACCAATTAATTGATCCAAGAATAGGTCCAGGTTCAAAACTCGAAGGTGTTGATAGATTATTCACATTGGGAATGAGATGTGTAAATGAATCCGGGGCTGAGAGGCCTTCCATGGGAGAGGCTGTGAAAGAAATTGAGAGTATTCTTGGACTGGCCAGCTTGAGCAAGTATACTGAAGGCGACCTCACTTCGTCTAGCTACGAGGACACAACTCAAGTCAGTCTTGACGATTTTTATAATGACAAGGCTTTTGATTACAGTGGTAAATTCCCTTCTGGTGGCATGAACACCACTTATTGAAACTACCAACGACTATAAATTTGAGTTACATAAGTTTGTTATTATTGAGCATATGATGACTATGAATTACATTTCGTTTGATTGTTTATTACTAGTGATGCTTCTGCTCTAATACTAGCTATTTCAGAAGTCAGAATTACAAATGGCTTCTTCAGATTAAGTGATCTTCATATTGATGTTTGATCGATATAAAGTAAGATCATATACTGTACAGGACTACAGATGAGTTTTATAGCTCAAAACTCTAAACTGTAACAAATAAAGAATTTTCTTGTTACACTGCCCTTTGCAGCTATGTTAACAAGCACAACAAATTT</gDNA_template>
            <first_frame> K  E  H  L :   D  I  W  I  L  N  I  T  *  A  N  S  *  L  R  K  V  M  Y  I  A  L  G  W  C  C  S  S  *  L  L  Q  E  L  Q  *  N  E  E  N  T  S  *  D  W  L  Q  R  P  Y  M  I  Q  K  I  T  A  N  S  T  N  *  L  I  Q  E  *  V  Q  V  Q  N  S  K  V  L  I  D  Y  S  H  W  E  *  D  V  *  M  N  P  G  L  R  G  L  P  W  E  R  L  *  K  K  L  R  V  F  L  D  W  P  A  *  A  S  I  L  K  A  T  S  L  R  L  A  T  R  T  Q  L  K  S  V  L  T  I  F  I  M  T  R  L  L  I  T  V  V  N  S  L  L  V  A  *  T  P  L  I  E  T  T  N  D  Y  K  F  E  L  H  K  F  V  I  I  E  H  M  M  T  M  N  Y  I  S  F  D  C  L  L  L  V  M  L  L  L  *  Y  *  L  F  Q  K  S  E  L  Q  M  A  S  S  D  *  V  I  F  I  L  M  F  D  R  Y  K  V  R  S  Y  T  V  Q  D  Y  R  *  V  L  *  L  K  T  L  N  C  N  K  *  R  I  F  L  L  H  C  P  L  Q  L  C  *  Q  A  Q  Q  I  </first_frame>
            <second_frame>  K  N  I   : W  I  F  G  S  *  I  L  H  E  P  T  V  D  *  E  K  *  C  I  *  L  W  G  G  A  A  R  A  D  Y  C  K  S  S  N  R  T  R  K  T  H  R  E  I  G  C  R  D  H  I  *  F  K  R  *  Q  Q  T  L  P  I  N  *  S  K  N  R  S  R  F  K  T  R  R  C  *  *  I  I  H  I  G  N  E  M  C  K  *  I  R  G  *  E  A  F  H  G  R  G  C  E  R  N  *  E  Y  S  W  T  G  Q  L  E  Q  V  Y  *  R  R  P  H  F  V  *  L  R  G  H  N  S  S  Q  S  *  R  F  L  *  *  Q  G  F  *  L  Q  W  *  I  P  F  W  W  H  E  H  H  L  L  K  L  P  T  T  I  N  L  S  Y  I  S  L  L  L  L  S  I  *  *  L  *  I  T  F  R  L  I  V  Y  Y  *  *  C  F  C  S  N  T  S  Y  F  R  S  Q  N  Y  K  W  L  L  Q  I  K  *  S  S  Y  *  C  L  I  D  I  K  *  D  H  I  L  Y  R  T  T  D  E  F  Y  S  S  K  L  *  T  V  T  N  K  E  F  S  C  Y  T  A  L  C  S  Y  V  N  K  H  N  K  F </second_frame>
            <third_frame>   R  T  F  :  G  Y  L  D  P  E  Y  Y  M  S  Q  Q  L  T  E  K  S  D  V  Y  S  F  G  V  V  L  L  E  L  I  T  A  R  A  P  I  E  R  G  K  H  I  V  R  L  V  A  E  T  I  Y  D  S  K  D  N  S  K  L  Y  Q  L  I  D  P  R  I  G  P  G  S  K  L  E  G  V  D  R  L  F  T  L  G  M  R  C  V  N  E  S  G  A  E  R  P  S  M  G  E  A  V  K  E  I  E  S  I  L  G  L  A  S  L  S  K  Y  T  E  G  D  L  T  S  S  S  Y  E  D  T  T  Q  V  S  L  D  D  F  Y  N  D  K  A  F  D  Y  S  G  K  F  P  S  G  G  M  N  T  T  Y  *  N  Y  Q  R  L  *  I  *  V  T  *  V  C  Y  Y  *  A  Y  D  D  Y  E  L  H  F  V  *  L  F  I  T  S  D  A  S  A  L  I  L  A  I  S  E  V  R  I  T  N  G  F  F  R  L  S  D  L  H  I  D  V  *  S  I  *  S  K  I  I  Y  C  T  G  L  Q  M  S  F  I  A  Q  N  S  K  L  *  Q  I  K  N  F  L  V  T  L  P  F  A  A  M  L  T  S  T  T  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135014" stop="135006"/>
                    <exon start="134938" stop="134462"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTFGYLDPEYYMSQQLTEKSDVYSFGVVLLELITARAPIERGKHIVRLVAETIYDSKDNSKLYQLIDPRIGPGSKLEGVDRLFTLGMRCVNESGAERPSMGEAVKEIESILGLASLSKYTEGDLTSSSYEDTTQVSLDDFYNDKAFDYSGKFPSGGMNTTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="137779" PGL_stop="135408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137779" e_stop="137696"/>
            <exon e_start="137574" e_stop="137422"/>
            <exon e_start="137317" e_stop="137184"/>
            <exon e_start="136110" e_stop="135891"/>
            <exon e_start="135496" e_stop="135408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.570" acc_prob="0.955" e_score="0.988"/>
          <exon-intron don_prob="0.994" acc_prob="0.982" e_score="0.974"/>
          <exon-intron don_prob="0.922" acc_prob="0.997" e_score="0.985"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="0.986"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="137779" e_stop="137696" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.570" acc_prob="0.955">
            <gDNA_intron_boundary i_start="137695" i_stop="137575" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="137574" e_stop="137422" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.982">
            <gDNA_intron_boundary i_start="137421" i_stop="137318" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="137317" e_stop="137184" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.922" acc_prob="0.997">
            <gDNA_intron_boundary i_start="137183" i_stop="136111" i_length="1073"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="136110" e_stop="135891" e_length="220"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="135890" i_stop="135497" i_length="394"/>
          </intron>
          <exon e_serial="5" e_score="0.966">
            <gDNA_exon_boundary e_start="135496" e_stop="135408" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137779" stop="137696"/>
              <exon start="137574" stop="137422"/>
              <exon start="137317" stop="137184"/>
              <exon start="136110" stop="135891"/>
              <exon start="135496" stop="135408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576585" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTACCTGCTCAACCGGAATCCTTTCCAACTCCAATATTTTGGACCCTTTTTCTTTACTTCTGAAAGTTATTGTTGCTTTGCAG : ACGGAAATAAGAAGTCATCATCACATACTGGTATCATCATTGGAGTATCGGTTGGTTGTGCAGTGCTTGTGCTCTTAACATTTTGTGCTGGCCTTTATGCCTTTCGCCAGAGAAAAATGGCAAAAAGAGCTGGTCATAGCAGTAACCCTTTTG : AATCTTGGGACCGTGATACAAGTGGTGCTGTGCCACAACTTAAAGGAGCAAGATGGTTCTCATTTGATGAGATTAGGAAGTGCACAAACAATTTTTCAGAATCTAACTGCATTGGATCTGGGGGCTATGGGAAG : GTCTTCAAAGGAACTCTTACTGCTGGGGAGGTAGTTGCAATTAAAAGAGCACAACATGGATCAATGCAGGGGGCTTTTGAGTTCAAAACAGAGATTGAGCTATTGTCGAGGATACATCACAAGAATGTTGTAAGCCTGGTTGGATTTTGTTATGAGCAAGGCGAACAAATGCTGGTTTATGAGTACATTCCAAAGGGTACTCTAAGGGAAAGTCTCTCAG : TCAAGCCAAAATTCCAGTTGGAGTGGACAAGGAGACTTAAGATAGCCCTTGATGCTGCTAGAGGTTTAGCATACTTGCATGAGCTTGCA</gDNA_template>
            <first_frame> V  T  C  S  T  G  I  L  S  N  S  N  I  L  D  P  F  S  L  L  L  K  V  I  V  A  L  Q  :  T  E  I  R  S  H  H  H  I  L  V  S  S  L  E  Y  R  L  V  V  Q  C  L  C  S  *  H  F  V  L  A  F  M  P  F  A  R  E  K  W  Q  K  E  L  V  I  A  V  T  L  L  :  N  L  G  T  V  I  Q  V  V  L  C  H  N  L  K  E  Q  D  G  S  H  L  M  R  L  G  S  A  Q  T  I  F  Q  N  L  T  A  L  D  L  G  A  M  G  R :   S  S  K  E  L  L  L  L  G  R  *  L  Q  L  K  E  H  N  M  D  Q  C  R  G  L  L  S  S  K  Q  R  L  S  Y  C  R  G  Y  I  T  R  M  L  *  A  W  L  D  F  V  M  S  K  A  N  K  C  W  F  M  S  T  F  Q  R  V  L  *  G  K  V  S  Q  :  S  S  Q  N  S  S  W  S  G  Q  G  D  L  R  *  P  L  M  L  L  E  V  *  H  T  C  M  S  L   </first_frame>
            <second_frame>  L  P  A  Q  P  E  S  F  P  T  P  I  F  W  T  L  F  L  Y  F  *  K  L  L  L  L  C  R :   R  K  *  E  V  I  I  T  Y  W  Y  H  H  W  S  I  G  W  L  C  S  A  C  A  L  N  I  L  C  W  P  L  C  L  S  P  E  K  N  G  K  K  S  W  S  *  Q  *  P  F  * :   I  L  G  P  *  Y  K  W  C  C  A  T  T  *  R  S  K  M  V  L  I  *  *  D  *  E  V  H  K  Q  F  F  R  I  *  L  H  W  I  W  G  L  W  E   : G  L  Q  R  N  S  Y  C  W  G  G  S  C  N  *  K  S  T  T  W  I  N  A  G  G  F  *  V  Q  N  R  D  *  A  I  V  E  D  T  S  Q  E  C  C  K  P  G  W  I  L  L  *  A  R  R  T  N  A  G  L  *  V  H  S  K  G  Y  S  K  G  K  S  L  S :   Q  A  K  I  P  V  G  V  D  K  E  T  *  D  S  P  *  C  C  *  R  F  S  I  L  A  *  A  C  </second_frame>
            <third_frame>   Y  L  L  N  R  N  P  F  Q  L  Q  Y  F  G  P  F  F  F  T  S  E  S  Y  C  C  F  A   : D  G  N  K  K  S  S  S  H  T  G  I  I  I  G  V  S  V  G  C  A  V  L  V  L  L  T  F  C  A  G  L  Y  A  F  R  Q  R  K  M  A  K  R  A  G  H  S  S  N  P  F   : E  S  W  D  R  D  T  S  G  A  V  P  Q  L  K  G  A  R  W  F  S  F  D  E  I  R  K  C  T  N  N  F  S  E  S  N  C  I  G  S  G  G  Y  G  K  :  V  F  K  G  T  L  T  A  G  E  V  V  A  I  K  R  A  Q  H  G  S  M  Q  G  A  F  E  F  K  T  E  I  E  L  L  S  R  I  H  H  K  N  V  V  S  L  V  G  F  C  Y  E  Q  G  E  Q  M  L  V  Y  E  Y  I  P  K  G  T  L  R  E  S  L  S   : V  K  P  K  F  Q  L  E  W  T  R  R  L  K  I  A  L  D  A  A  R  G  L  A  Y  L  H  E  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137777" stop="137696"/>
                    <exon start="137574" stop="137422"/>
                    <exon start="137317" stop="137184"/>
                    <exon start="136110" stop="135891"/>
                    <exon start="135496" stop="135408"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLLNRNPFQLQYFGPFFFTSESYCCFADGNKKSSSHTGIIIGVSVGCAVLVLLTFCAGLYAFRQRKMAKRAGHSSNPFESWDRDTSGAVPQLKGARWFSFDEIRKCTNNFSESNCIGSGGYGKVFKGTLTAGEVVAIKRAQHGSMQGAFEFKTEIELLSRIHHKNVVSLVGFCYEQGEQMLVYEYIPKGTLRESLSVKPKFQLEWTRRLKIALDAARGLAYLHELA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="146156" PGL_stop="147412"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146156" e_stop="146480"/>
            <exon e_start="146581" e_stop="146744"/>
            <exon e_start="146996" e_stop="147412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="146156" e_stop="146480" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.999">
            <gDNA_intron_boundary i_start="146481" i_stop="146580" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146581" e_stop="146744" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.927" acc_prob="1.000">
            <gDNA_intron_boundary i_start="146745" i_stop="146995" i_length="251"/>
          </intron>
          <exon e_serial="3" e_score="0.958">
            <gDNA_exon_boundary e_start="146996" e_stop="147412" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146156" stop="146480"/>
              <exon start="146581" stop="146744"/>
              <exon start="146996" stop="147369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146174" stop="146480"/>
              <exon start="146581" stop="146744"/>
              <exon start="146996" stop="147157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147005" stop="147412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGCAGCACCGGCAAGAGATCGATCGCCACCGCAGCGTGGTGGTGGAGCTACCACTCGAAGACGGAAACGGATACTGCGCCTCATTCGATTTGGAAAAAGCAGTATGTAGCCACGGCTTATTCATGATGGCCCCAAACCGATGGGACACTCTCTCCAAAACCCTAGAACGCCCACTACGCCTCTCCGAAAACATTAACGATGATGATCACGAACAATCGGTTCTCGTCCAAATTACTCAACCGTCGGATTATCCTCATTCCCTCCTTCTACGTGTTCTCGATACTGATTCCCTTTCTACTATACACCAACGCTCTCTGCTG : GGTCAAGTGAGGCGAATGGTGAGATTATCAGTGGAAGAGAATAAAAGAGTGAAATTGTTTCAGGAGATCTGTGGAGAAGCAAAGGAGAGAGGATTTGGGAGAGTGTTTAGATCGCCGACATTGTTTGAGGACATGGTGAAGTGTATGCTGCTCTGCAATTGCCA : GTGGTCAAGGACGTTGAGCATGGCTGAAGCATTATGTGAGCTTCAGTTGGAGCTGAACTGTCCCTCGTCAGCTGCATCTTTTCCTGATCCTGATAATCAAAATCAGTTGAAGGGCGTAACTTCCAAGTCAGAGCATTTCACTCCAAGAACACCAGCAGGAAAAGAATTACGGAAAAGAGCTGGAGCTTATGGATGTTCCAGAAACTTGTTGGAGAGGCTTAACGAAGTCGAAGAAATTGTAGATATAGATAAACCGGGTGTAACTGTGACACCTGCATTTTCAGTTGGTGAAGAGGTTCTCCAAAAAAGTAATCTTTGTCAGGATACTACTGAGGTTTGGGAAGTTAGTGTAAGTGCACCACTCAATCCTGATCCTTCAGAAGATAGAAAGCTGAGCTCTTTTAATCAGCTTGGGAA</gDNA_template>
            <first_frame> *  N  A  A  P  A  R  D  R  S  P  P  Q  R  G  G  G  A  T  T  R  R  R  K  R  I  L  R  L  I  R  F  G  K  S  S  M  *  P  R  L  I  H  D  G  P  K  P  M  G  H  S  L  Q  N  P  R  T  P  T  T  P  L  R  K  H  *  R  *  *  S  R  T  I  G  S  R  P  N  Y  S  T  V  G  L  S  S  F  P  P  S  T  C  S  R  Y  *  F  P  F  Y  Y  T  P  T  L  S  A   : G  S  S  E  A  N  G  E  I  I  S  G  R  E  *  K  S  E  I  V  S  G  D  L  W  R  S  K  G  E  R  I  W  E  S  V  *  I  A  D  I  V  *  G  H  G  E  V  Y  A  A  L  Q  L  P  :  V  V  K  D  V  E  H  G  *  S  I  M  *  A  S  V  G  A  E  L  S  L  V  S  C  I  F  S  *  S  *  *  S  K  S  V  E  G  R  N  F  Q  V  R  A  F  H  S  K  N  T  S  R  K  R  I  T  E  K  S  W  S  L  W  M  F  Q  K  L  V  G  E  A  *  R  S  R  R  N  C  R  Y  R  *  T  G  C  N  C  D  T  C  I  F  S  W  *  R  G  S  P  K  K  *  S  L  S  G  Y  Y  *  G  L  G  S  *  C  K  C  T  T  Q  S  *  S  F  R  R  *  K  A  E  L  F  *  S  A  W  E </first_frame>
            <second_frame>  K  M  Q  H  R  Q  E  I  D  R  H  R  S  V  V  V  E  L  P  L  E  D  G  N  G  Y  C  A  S  F  D  L  E  K  A  V  C  S  H  G  L  F  M  M  A  P  N  R  W  D  T  L  S  K  T  L  E  R  P  L  R  L  S  E  N  I  N  D  D  D  H  E  Q  S  V  L  V  Q  I  T  Q  P  S  D  Y  P  H  S  L  L  L  R  V  L  D  T  D  S  L  S  T  I  H  Q  R  S  L  L  :  G  Q  V  R  R  M  V  R  L  S  V  E  E  N  K  R  V  K  L  F  Q  E  I  C  G  E  A  K  E  R  G  F  G  R  V  F  R  S  P  T  L  F  E  D  M  V  K  C  M  L  L  C  N  C  Q :   W  S  R  T  L  S  M  A  E  A  L  C  E  L  Q  L  E  L  N  C  P  S  S  A  A  S  F  P  D  P  D  N  Q  N  Q  L  K  G  V  T  S  K  S  E  H  F  T  P  R  T  P  A  G  K  E  L  R  K  R  A  G  A  Y  G  C  S  R  N  L  L  E  R  L  N  E  V  E  E  I  V  D  I  D  K  P  G  V  T  V  T  P  A  F  S  V  G  E  E  V  L  Q  K  S  N  L  C  Q  D  T  T  E  V  W  E  V  S  V  S  A  P  L  N  P  D  P  S  E  D  R  K  L  S  S  F  N  Q  L  G   </second_frame>
            <third_frame>   K  C  S  T  G  K  R  S  I  A  T  A  A  W  W  W  S  Y  H  S  K  T  E  T  D  T  A  P  H  S  I  W  K  K  Q  Y  V  A  T  A  Y  S  *  W  P  Q  T  D  G  T  L  S  P  K  P  *  N  A  H  Y  A  S  P  K  T  L  T  M  M  I  T  N  N  R  F  S  S  K  L  L  N  R  R  I  I  L  I  P  S  F  Y  V  F  S  I  L  I  P  F  L  L  Y  T  N  A  L  C  W :   V  K  *  G  E  W  *  D  Y  Q  W  K  R  I  K  E  *  N  C  F  R  R  S  V  E  K  Q  R  R  E  D  L  G  E  C  L  D  R  R  H  C  L  R  T  W  *  S  V  C  C  S  A  I  A   : S  G  Q  G  R  *  A  W  L  K  H  Y  V  S  F  S  W  S  *  T  V  P  R  Q  L  H  L  F  L  I  L  I  I  K  I  S  *  R  A  *  L  P  S  Q  S  I  S  L  Q  E  H  Q  Q  E  K  N  Y  G  K  E  L  E  L  M  D  V  P  E  T  C  W  R  G  L  T  K  S  K  K  L  *  I  *  I  N  R  V  *  L  *  H  L  H  F  Q  L  V  K  R  F  S  K  K  V  I  F  V  R  I  L  L  R  F  G  K  L  V  *  V  H  H  S  I  L  I  L  Q  K  I  E  S  *  A  L  L  I  S  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0043D23.2" strand="+"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146157" stop="146480"/>
                    <exon start="146581" stop="146744"/>
                    <exon start="146996" stop="147410"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMQHRQEIDRHRSVVVELPLEDGNGYCASFDLEKAVCSHGLFMMAPNRWDTLSKTLERPLRLSENINDDDHEQSVLVQITQPSDYPHSLLLRVLDTDSLSTIHQRSLLGQVRRMVRLSVEENKRVKLFQEICGEAKERGFGRVFRSPTLFEDMVKCMLLCNCQWSRTLSMAEALCELQLELNCPSSAASFPDPDNQNQLKGVTSKSEHFTPRTPAGKELRKRAGAYGCSRNLLERLNEVEEIVDIDKPGVTVTPAFSVGEEVLQKSNLCQDTTEVWEVSVSAPLNPDPSEDRKLSSFNQLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 259 chains have been computed
$ 
$ memory statistics:
$ 364296 bytes spliced alignments in total
$ 153 spliced alignments have been stored
$ 2381 bytes was the average size of a spliced alignment
$ 39320 bytes predicted gene locations in total
$ 26 predicted gene locations have been stored
$ 1512 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 289 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:19:39
-->
