<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:12:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556422" ref_strand="+" ref_description="SGN-E556422 [cTSD-3-G9]">
      <seq>cttctcaattttgaaaatcaaaatttgtgctctccatccgtcagccttcgtctaaactgtccgccatttttgtctactttgtcagcctttgaaaatcaaaattgtgctctccgtccgtccgtcttcgtctaatctgtccgccatttagtgtctactctgtccgccttaaaaaatcaaatcgccaatttcgtctactctgtccgccattttcgtccaatattcttgaaagattgggcagcattggatgcatataaagacaagaaaactggagaacttttgggtccacaacattcgtttaatgtggagtttgctcaagacaacatgcaacaaataagtgatagccttgattgcggactattcgtaattgtatatgcagaattctgagtgacaaaatcaacatgtcatgtaatagttttaagagtagctatcttcgcaaaagatatgcgattcttttattgaagtatggtctcgacaagatgaatgctggatatgttagcaacagtgatgacccttcaagaatgaagaatgtattaaacccatcatctgaagatgaaattgttaatgtaggctagttagttttcaatgtttgatttttttttgttttttggagttaaacaagatgtttgaagtatttattgacataacaacacatattgttaaattatgaaagtgttttgatttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="5821" stop="7847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6121" g_stop="6348" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6349" i_stop="7015" i_length="667">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7016" g_stop="7130" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="344" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7131" i_stop="7204" i_length="74">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7205" g_stop="7553" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="693" r_length="349" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E556422" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6121" e_stop="6348"/>
          <exon e_start="7016" e_stop="7130"/>
          <exon e_start="7205" e_stop="7553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAGCCTTCGTCTAATCTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTT-TTGTCTACTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTCTGTCCGCCATTTTCGTCCAATATTCTTGAAAGGTATTGTGTTCTTCTTCGATTCTCTCTTTTCATTCTTCTATTTTTCTAATATTTCATGGATCATCTGTCATTTAGTATTGGGATTACCCAAATAATCACTTCAAACTCTAAACAAATCTATATTTTTGAAGATCCGAAATTGGTTGAAAACAAGTCTAAGAGCTTGCATAATTGGTTTGCATTGTGTTGTTACAATTATGTATCAAGCACAATTTATGTTTCATGTATCATGTTAAAGTTTGTCGTTTATATAAAGTATCAAGTAGACAGACTTATAACTATAGTTACACGTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGTATCAAGTAGACAGACTTATAACTGTAGTTACACTTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGGCTATAAAGTGTCTGTTAAGTATCATTTTGACTGACGTATGATATGTTGTTAGAATTATGTATCAAGTTTATTTTTGCATTTTATGTATCATATTAACAACTTTGCATTTTTTGTATCATGTTAGTATCAAATAGACAGACTTATAATTGTAGTTACCTTTATGTATCAAGTACAACTTTGCATTTTTTGTATCATGTTAGGCTATAAAGTGTCTGTTAAGTATCATTTTGACTGACTTATGATATGTTGTTAGAACAGATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCTGTGAGTATTGTTTATTATTTTATTTTATTTTTTGTATCTATTCATCCTTATAATTATTCTTATTGTTTTTGTAGTGATTGCGGACTATTCGTAGTTGTATATGCAGAATTCTGAGTGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGACTTTTTTTTATTTTCTGGAGTTGAACAAGATGTTTGAAGTATTTATTAACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTTAAAATTATTT</genome_strand>
        <mrna_strand>CTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAGCCTTCGTCTAAACTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTTAGTGTCTACTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTCTGTCCGCCATTTTCGTCCAATATTCTTGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCT..........................................................................TGATTGCGGACTATTCGTAATTGTATATGCAGAATTCTGAGTGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGATTTTTTTTTGTTTTTTGGAGTTAAACAAGATGTTTGAAGTATTTATTGACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553755" ref_strand="+" ref_description="SGN-E553755 [cTSC-2-C11]">
      <seq>aaaagaataaaagctacttataagaatatgaaaagcgtgaaattagtatctgagttgcccaatttaaaagcagtaccttgtaattactatgttgataatcatcttaaatattcatcaccatccattattgacactaatcatgatgattcattaatccccatcattgatttttccctcctttcctcaaaagacccttatcaacactctaaagtcattcaacaacttggtagagcttgtcaacaatggggatttttcatggttgtgaaccatggtatagaagaaagtttgatgaaggagttgattggggtgataaaagaatttttcttaatgggagaggaggacaaatggagatacaaaggggaaaaagtgtttgatccaataaagtatggaactagctttaattgtacttctaatcacgacatcactactacttcttattggagagattaccttaaactctctcttcatcctcaacttcattgccccgaccaacccaataacttcagagaagttttgggtgagtatggtgagaaatcgagaaaagtggcaagaaaattactatcaggaatatcggaaagcttaggattggaagaagagttgatgaataaatcccttgatctggactcgggttacgaggtgcttgttgcaaattattatccagcatgtccacagcccgaacttgtaatgggccttccaccccattctgattttggactgttaacttttcttatacaaaatgatgttggaggattacaaatacaacacaatggaaaatggatcaacatcaatcccattcccaacgctattttggttaacactggcgatcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="15241" stop="17209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15541" g_stop="15798" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15799" i_stop="16063" i_length="265">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16064" g_stop="16311" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="506" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16312" i_stop="16585" i_length="274">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16586" g_stop="16909" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="830" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E553755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15541" e_stop="15798"/>
          <exon e_start="16064" e_stop="16311"/>
          <exon e_start="16586" e_stop="16909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAATAAAAGCTACTTATAAGAATATGAAAAGCGTGAAATTAGTATCTGAGTTGCCCAATTTAAAAGCAGTACCTTGTAATTACTATGTTGATAATCATCTTAAATATTCATCACCATCCATTATTGACACTAATCATGATGATTCATTAATCCCCATCATTGATTTTTCCCTCCTTTCCTCAAAAGACCCTTATCAACACTCTAAAGTCATTCAACAACTTGGTAGAGCTTGTCAACAATGGGGATTTTTCATGGTACGTAGTTAGCATTAATTAATTGATCTTGTAAAAAAAATATTTGTGCTATTATTGCATTAGTTGCACATGCATGATTTGAAAGAATATAATGCCAAATTCAATCATGCATATGGGAGTTCGACGTGCTTCCTTCACTTAAACATATCGTAGTAATATTTATCTGTTCTGAGAAATTTGTGTGACTATAAAAACATTTTAATTATTTCTAAATACAAAAGTGTGATATTTGTTTTATTTGAAAAGCGGAATTGAATGAACGCAGGTTGTGAACCATGGTATAGAAGAAAGTTTGATGAAGGAGTTGATTGGGGTGATAAAAGAATTTTTCTTAATGGGAGAGGAGGACAAATGGAGATACAAAGGGGAAAAAGTGTTTGATCCAATAAAGTATGGAACTAGCTTTAATTGTACTTCTAATCACGACATCACTACTACTTCTTATTGGAGAGATTACCTTAAACTCTCTCTTCATCCTCAACTTCATTGCCCCGACCAACCCAATAACTTCAGGTATTTTTTTTTTTGGTCTGTCTCAATTTATGCGTTTCATTTTTATATAATTTTTAATTAATTAAATTGATTACTACTTTGAAAAATCCACGTTTGATTTTATCCATGAAACGTCACAAAACAAAATCTGTCAATGGGTCACTCATGTCGGAGTTGGGCCTGTGCGACTGCGACCATTTTTCAAGTTTAAATATTTAGCCGCTCAATCAAAAATATTTATATCGTCGACAAAATTTTATATAATTACTATATTTTGTATGGTTTAATTTTACAGAGAAGTTTTGGGTGAGTATGGTGAGAAATCGAGAAAAGTGGCAAGAAAATTACTATCAGGAATATCGGAAAGCTTAGGATTGGAAGAAGAGTTGATGAATAAATCCCTTGATCTGGACTCGGGTTACGAGGTGCTTGTTGCAAATTATTATCCAGCATGTCCACAGCCCGAACTTGTAATGGGCCTTCCACCCCATTCTGATTTTGGACTGTTAACTTTTCTTATACAAAATGATGTTGGAGGATTACAAATACAACACAATGGAAAATGGATCAACATCAATCCCATTCCCAACGCTATTTTGGTTAACACTGGCGATCACCT</genome_strand>
        <mrna_strand>AAAAGAATAAAAGCTACTTATAAGAATATGAAAAGCGTGAAATTAGTATCTGAGTTGCCCAATTTAAAAGCAGTACCTTGTAATTACTATGTTGATAATCATCTTAAATATTCATCACCATCCATTATTGACACTAATCATGATGATTCATTAATCCCCATCATTGATTTTTCCCTCCTTTCCTCAAAAGACCCTTATCAACACTCTAAAGTCATTCAACAACTTGGTAGAGCTTGTCAACAATGGGGATTTTTCATG.........................................................................................................................................................................................................................................................................GTTGTGAACCATGGTATAGAAGAAAGTTTGATGAAGGAGTTGATTGGGGTGATAAAAGAATTTTTCTTAATGGGAGAGGAGGACAAATGGAGATACAAAGGGGAAAAAGTGTTTGATCCAATAAAGTATGGAACTAGCTTTAATTGTACTTCTAATCACGACATCACTACTACTTCTTATTGGAGAGATTACCTTAAACTCTCTCTTCATCCTCAACTTCATTGCCCCGACCAACCCAATAACTTCAG..................................................................................................................................................................................................................................................................................AGAAGTTTTGGGTGAGTATGGTGAGAAATCGAGAAAAGTGGCAAGAAAATTACTATCAGGAATATCGGAAAGCTTAGGATTGGAAGAAGAGTTGATGAATAAATCCCTTGATCTGGACTCGGGTTACGAGGTGCTTGTTGCAAATTATTATCCAGCATGTCCACAGCCCGAACTTGTAATGGGCCTTCCACCCCATTCTGATTTTGGACTGTTAACTTTTCTTATACAAAATGATGTTGGAGGATTACAAATACAACACAATGGAAAATGGATCAACATCAATCCCATTCCCAACGCTATTTTGGTTAACACTGGCGATCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555401" ref_strand="+" ref_description="SGN-E555401 [cTSC-2-N20]">
      <seq>aaaagaataaaagctacttataagaatatgaaaagcgtgaaattagtatctgagttgcccaatttaaaagcagtaccttgtaattactatgttgataatcatcttaaatattcatcaccatccattattgacactaatcatgatgattcattaatccccatcattgatttttccctcctttcctcaaaagacccttatcaacactctaaagtcattcaacaacttggtagagcttgtcaacaatggggatttttcatggttgtgaaccatggtatagaagaaagtttgatgaaggagttgattggggtgataaaagaatttttcttaatgggagaggaggacaaatggagatacaaaggggaaaaagtgtttgatccaataaagtatggaactagctttaattgtacttctaatcacgacatcactactacttcttattggagagattaccttaaactctctcttcatcctcaacttcattgccccgaccaacccaataacttcagagaagttttgggtgagtatggtgagaaatcgagaaaagtggcaagaaaattactatcaggaatatcggaaagcttaggattggaagaagagttgatgaataaatcccttgatctggactcgggttacgaggtgcttgttgcaaattattatccagcatgtccacagcccgaacttgtaatgggccttccaccccattctgattttggactgttaacttttcttatacaaaatgatgttggaggattacaaatacaacacaatggaaaatggatcaacatcaatcccattcccaacgcttttttggttaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="15241" stop="17196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15541" g_stop="15798" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15799" i_stop="16063" i_length="265">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16064" g_stop="16311" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="506" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16312" i_stop="16585" i_length="274">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16586" g_stop="16896" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="817" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E555401" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15541" e_stop="15798"/>
          <exon e_start="16064" e_stop="16311"/>
          <exon e_start="16586" e_stop="16896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAATAAAAGCTACTTATAAGAATATGAAAAGCGTGAAATTAGTATCTGAGTTGCCCAATTTAAAAGCAGTACCTTGTAATTACTATGTTGATAATCATCTTAAATATTCATCACCATCCATTATTGACACTAATCATGATGATTCATTAATCCCCATCATTGATTTTTCCCTCCTTTCCTCAAAAGACCCTTATCAACACTCTAAAGTCATTCAACAACTTGGTAGAGCTTGTCAACAATGGGGATTTTTCATGGTACGTAGTTAGCATTAATTAATTGATCTTGTAAAAAAAATATTTGTGCTATTATTGCATTAGTTGCACATGCATGATTTGAAAGAATATAATGCCAAATTCAATCATGCATATGGGAGTTCGACGTGCTTCCTTCACTTAAACATATCGTAGTAATATTTATCTGTTCTGAGAAATTTGTGTGACTATAAAAACATTTTAATTATTTCTAAATACAAAAGTGTGATATTTGTTTTATTTGAAAAGCGGAATTGAATGAACGCAGGTTGTGAACCATGGTATAGAAGAAAGTTTGATGAAGGAGTTGATTGGGGTGATAAAAGAATTTTTCTTAATGGGAGAGGAGGACAAATGGAGATACAAAGGGGAAAAAGTGTTTGATCCAATAAAGTATGGAACTAGCTTTAATTGTACTTCTAATCACGACATCACTACTACTTCTTATTGGAGAGATTACCTTAAACTCTCTCTTCATCCTCAACTTCATTGCCCCGACCAACCCAATAACTTCAGGTATTTTTTTTTTTGGTCTGTCTCAATTTATGCGTTTCATTTTTATATAATTTTTAATTAATTAAATTGATTACTACTTTGAAAAATCCACGTTTGATTTTATCCATGAAACGTCACAAAACAAAATCTGTCAATGGGTCACTCATGTCGGAGTTGGGCCTGTGCGACTGCGACCATTTTTCAAGTTTAAATATTTAGCCGCTCAATCAAAAATATTTATATCGTCGACAAAATTTTATATAATTACTATATTTTGTATGGTTTAATTTTACAGAGAAGTTTTGGGTGAGTATGGTGAGAAATCGAGAAAAGTGGCAAGAAAATTACTATCAGGAATATCGGAAAGCTTAGGATTGGAAGAAGAGTTGATGAATAAATCCCTTGATCTGGACTCGGGTTACGAGGTGCTTGTTGCAAATTATTATCCAGCATGTCCACAGCCCGAACTTGTAATGGGCCTTCCACCCCATTCTGATTTTGGACTGTTAACTTTTCTTATACAAAATGATGTTGGAGGATTACAAATACAACACAATGGAAAATGGATCAACATCAATCCCATTCCCAACGCTATTTTGGTTAACA</genome_strand>
        <mrna_strand>AAAAGAATAAAAGCTACTTATAAGAATATGAAAAGCGTGAAATTAGTATCTGAGTTGCCCAATTTAAAAGCAGTACCTTGTAATTACTATGTTGATAATCATCTTAAATATTCATCACCATCCATTATTGACACTAATCATGATGATTCATTAATCCCCATCATTGATTTTTCCCTCCTTTCCTCAAAAGACCCTTATCAACACTCTAAAGTCATTCAACAACTTGGTAGAGCTTGTCAACAATGGGGATTTTTCATG.........................................................................................................................................................................................................................................................................GTTGTGAACCATGGTATAGAAGAAAGTTTGATGAAGGAGTTGATTGGGGTGATAAAAGAATTTTTCTTAATGGGAGAGGAGGACAAATGGAGATACAAAGGGGAAAAAGTGTTTGATCCAATAAAGTATGGAACTAGCTTTAATTGTACTTCTAATCACGACATCACTACTACTTCTTATTGGAGAGATTACCTTAAACTCTCTCTTCATCCTCAACTTCATTGCCCCGACCAACCCAATAACTTCAG..................................................................................................................................................................................................................................................................................AGAAGTTTTGGGTGAGTATGGTGAGAAATCGAGAAAAGTGGCAAGAAAATTACTATCAGGAATATCGGAAAGCTTAGGATTGGAAGAAGAGTTGATGAATAAATCCCTTGATCTGGACTCGGGTTACGAGGTGCTTGTTGCAAATTATTATCCAGCATGTCCACAGCCCGAACTTGTAATGGGCCTTCCACCCCATTCTGATTTTGGACTGTTAACTTTTCTTATACAAAATGATGTTGGAGGATTACAAATACAACACAATGGAAAATGGATCAACATCAATCCCATTCCCAACGCTTTTTTGGTTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236063" ref_strand="+" ref_description="SGN-E236063 [cLED-16-P9]">
      <seq>agctacttataagaatatgaaaagcgtgaaattagtatctgagttgcccaatttaaaagcagtaccttgtaattactatgttgataatcatcttaaatattcatcaccatccattattgacactaatcatgatgattcattaatccccatcattgatttttccctcctttcctcaaaagacccttatcaacactctaaagtcattcaacaacttggtagagcttgtcaacaatggggatttttcatggttgtgaaccatggtatagaagaaagtttgatgaaggagttgattggggtgataaaagaatttttcttaatgggagaggaggacaaatggagatacaaaggggaaaaagtgtttgatccaataaagtatggaactagctttaattgtacttctaatcacgacatcactactacttcttattggagagattaccttaaactctctcttcatcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="15252" stop="16577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15552" g_stop="15798" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15799" i_stop="16063" i_length="265">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16064" g_stop="16277" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="461" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E236063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15552" e_stop="15798"/>
          <exon e_start="16064" e_stop="16277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTACTTATAAGAATATGAAAAGCGTGAAATTAGTATCTGAGTTGCCCAATTTAAAAGCAGTACCTTGTAATTACTATGTTGATAATCATCTTAAATATTCATCACCATCCATTATTGACACTAATCATGATGATTCATTAATCCCCATCATTGATTTTTCCCTCCTTTCCTCAAAAGACCCTTATCAACACTCTAAAGTCATTCAACAACTTGGTAGAGCTTGTCAACAATGGGGATTTTTCATGGTACGTAGTTAGCATTAATTAATTGATCTTGTAAAAAAAATATTTGTGCTATTATTGCATTAGTTGCACATGCATGATTTGAAAGAATATAATGCCAAATTCAATCATGCATATGGGAGTTCGACGTGCTTCCTTCACTTAAACATATCGTAGTAATATTTATCTGTTCTGAGAAATTTGTGTGACTATAAAAACATTTTAATTATTTCTAAATACAAAAGTGTGATATTTGTTTTATTTGAAAAGCGGAATTGAATGAACGCAGGTTGTGAACCATGGTATAGAAGAAAGTTTGATGAAGGAGTTGATTGGGGTGATAAAAGAATTTTTCTTAATGGGAGAGGAGGACAAATGGAGATACAAAGGGGAAAAAGTGTTTGATCCAATAAAGTATGGAACTAGCTTTAATTGTACTTCTAATCACGACATCACTACTACTTCTTATTGGAGAGATTACCTTAAACTCTCTCTTCATCCTC</genome_strand>
        <mrna_strand>AGCTACTTATAAGAATATGAAAAGCGTGAAATTAGTATCTGAGTTGCCCAATTTAAAAGCAGTACCTTGTAATTACTATGTTGATAATCATCTTAAATATTCATCACCATCCATTATTGACACTAATCATGATGATTCATTAATCCCCATCATTGATTTTTCCCTCCTTTCCTCAAAAGACCCTTATCAACACTCTAAAGTCATTCAACAACTTGGTAGAGCTTGTCAACAATGGGGATTTTTCATG.........................................................................................................................................................................................................................................................................GTTGTGAACCATGGTATAGAAGAAAGTTTGATGAAGGAGTTGATTGGGGTGATAAAAGAATTTTTCTTAATGGGAGAGGAGGACAAATGGAGATACAAAGGGGAAAAAGTGTTTGATCCAATAAAGTATGGAACTAGCTTTAATTGTACTTCTAATCACGACATCACTACTACTTCTTATTGGAGAGATTACCTTAAACTCTCTCTTCATCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241138" ref_strand="+" ref_description="SGN-E241138 [cLED-26-J7]">
      <seq>caggatgctgacacttgggtaattttacaaattctacaacatttatctctataaattatcaacctctttccaagcattttcatcaattatggaagctacagctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19314" stop="20563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19614" g_stop="19950" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20263" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="496" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E241138" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19614" e_stop="19950"/>
          <exon e_start="20105" e_stop="20263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATGCTGACACTTGGGTAATTTTACAAATTCTACAACATTTATCTCTATAAATTATCAACCTCTTTCCAAGCATTTTCATCAATTATGGAAGCTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAAT</genome_strand>
        <mrna_strand>CAGGATGCTGACACTTGGGTAATTTTACAAATTCTACAACATTTATCTCTATAAATTATCAACCTCTTTCCAAGCATTTTCATCAATTATGGAAGCTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331773" ref_strand="+" ref_description="SGN-E331773 [cTOD-7-I13]">
      <seq>gatgctgacacttgggtaattttacaaattctacaacatttatctctataaattatcaacctctttccaagcattttcatcaattatggaagctacagctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19317" stop="20577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19617" g_stop="19950" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20277" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="507" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E331773" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19617" e_stop="19950"/>
          <exon e_start="20105" e_stop="20277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCTGACACTTGGGTAATTTTACAAATTCTACAACATTTATCTCTATAAATTATCAACCTCTTTCCAAGCATTTTCATCAATTATGGAAGCTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAG</genome_strand>
        <mrna_strand>GATGCTGACACTTGGGTAATTTTACAAATTCTACAACATTTATCTCTATAAATTATCAACCTCTTTCCAAGCATTTTCATCAATTATGGAAGCTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722023" ref_strand="+" ref_description="SGN-E722023 [FC15DH07]">
      <seq>gggcgattggcggccaatcggccgaattgatcaattatggaagctacagctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19392" stop="21265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19688" g_stop="19950" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="285" r_length="263" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="521" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="852" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="20965" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="853" r_stop="894" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E722023" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19688" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="20965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCATCAATTATGGAAGCTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCA</genome_strand>
        <mrna_strand>CGAATTGATCAATTATGGAAGCTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724823" ref_strand="+" ref_description="SGN-E724823 [FC25BA11]">
      <seq>gatcaattatggaccctacagctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19395" stop="21265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19694" g_stop="19950" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="493" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="824" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="20965" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="866" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E724823" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19694" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="20965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATTATGGAAGCTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCA</genome_strand>
        <mrna_strand>GATCAATTATGGACCCTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710700" ref_strand="+" ref_description="SGN-E710700 [FA56BB05]">
      <seq>cccattaatccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgtcctaccgccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcactgattgattgcactcatgaatttttcaatttaccaccaggaacaaaaacacaagtttactgggaagcatgtgtctggatcctataacatatggaacaagtttccatactactaccgaaaatgtcttcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19416" stop="20574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19708" g_stop="19950" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20274" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="415" r_length="172" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E710700" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19708" e_stop="19950"/>
          <exon e_start="20105" e_stop="20274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCA-GAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGT-TGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTG</genome_strand>
        <mrna_strand>CCCATTAATCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTCCTACCGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCACTGATTGATTGCACTCATGAATTTTTCAATTTACCACCAGGAACAAAAACACAAGTTTACTGGGAAGCATGTGTCTGGATCCTATAACATATGGAACAAGTTTCCATACTACTACCGAAAATGTCTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701981" ref_strand="+" ref_description="SGN-E701981 [FA17BH09]">
      <seq>ctacagctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagaagcacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19409" stop="21321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19709" g_stop="19950" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="478" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="809" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="21021" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="907" r_length="98" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E701981" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19709" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="21021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATT</genome_strand>
        <mrna_strand>CTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAAGCACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725337" ref_strand="+" ref_description="SGN-E725337 [FC26DB12]">
      <seq>gggcgattggcggccaatcggccgaattgaattatggaagctccagctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19396" stop="21265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19709" g_stop="19950" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="282" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="518" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="849" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="20965" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="850" r_stop="891" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E725337" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19709" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="20965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCA</genome_strand>
        <mrna_strand>CTCCAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706318" ref_strand="+" ref_description="SGN-E706318 [FA29CE08]">
      <seq>ctacagctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccangttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgaattaaaattaatcatcgggccttttaaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19409" stop="21129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19709" g_stop="19950" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="478" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20829" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="886" r_length="408" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E706318" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19709" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATC-GGCCTTTTAAAGTAT</genome_strand>
        <mrna_strand>CTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCANGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGAATTAAAATTAATCATCGGGCCTTTTAAAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554434" ref_strand="+" ref_description="SGN-E554434 [cTSC-4-E3]">
      <seq>tacagctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttccacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19410" stop="21028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19710" g_stop="19950" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="477" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20728" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="783" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E554434" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19710" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTT</genome_strand>
        <mrna_strand>TACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCCACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242934" ref_strand="+" ref_description="SGN-E242934 [cLED-31-H11]">
      <seq>tacagctcctcttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19410" stop="20822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19710" g_stop="19950" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="477" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20522" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="577" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E242934" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19710" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAG</genome_strand>
        <mrna_strand>TACAGCTCCTCTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333267" ref_strand="+" ref_description="SGN-E333267 [cTOD-20-A3]">
      <seq>tacagctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacnagaaagttactangaagcatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19410" stop="20788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19710" g_stop="19950" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="477" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20488" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="543" r_length="66" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E333267" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19710" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATC</genome_strand>
        <mrna_strand>TACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACNAGAAAGTTACTANGAAGCATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248221" ref_strand="+" ref_description="SGN-E248221 [cLEF-55-C21]">
      <seq>acagctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaagtctttgtccatcctcattttcactctcccaccaaaccacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19411" stop="20634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19711" g_stop="19950" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20334" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="470" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E248221" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19711" e_stop="19950"/>
          <exon e_start="20105" e_stop="20334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAAC</genome_strand>
        <mrna_strand>ACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAAGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243932" ref_strand="+" ref_description="SGN-E243932 [cLED-35-D8]">
      <seq>acagctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19411" stop="20194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19711" g_stop="19894" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E243932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>184</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19711" e_stop="19894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAAC</genome_strand>
        <mrna_strand>ACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700495" ref_strand="+" ref_description="SGN-E700495 [FA13BB09]">
      <seq>cagctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19412" stop="21297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19712" g_stop="19950" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="475" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="806" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="20997" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="880" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E700495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19712" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="20997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGT</genome_strand>
        <mrna_strand>CAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708885" ref_strand="+" ref_description="SGN-E708885 [FA42AB10]">
      <seq>cggctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19412" stop="21060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19712" g_stop="19950" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="475" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="806" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="20930" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="813" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E708885" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19712" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="20930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTA</genome_strand>
        <mrna_strand>CGGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554631" ref_strand="+" ref_description="SGN-E554631 [cTSC-4-O22]">
      <seq>agctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaagcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19413" stop="21237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19713" g_stop="19950" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="474" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="805" r_length="331" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="20937" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="806" r_stop="819" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E554631" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19713" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="20937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGG</genome_strand>
        <mrna_strand>AGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAAGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710190" ref_strand="+" ref_description="SGN-E710190 [FA54CB12]">
      <seq>cgctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaaggcccttcctaactactctctcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19414" stop="21030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19713" g_stop="19950" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="474" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20730" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="783" r_length="309" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E710190" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19713" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTC-AAGGCCCTTCCTAACTACTCTCTCTTGG</genome_strand>
        <mrna_strand>CGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAAGGCCCTTCCTAACTACTCTCTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333456" ref_strand="+" ref_description="SGN-E333456 [cTOD-20-M9]">
      <seq>agctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttanggcttgaagaaagttacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19413" stop="20820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19713" g_stop="19950" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="474" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20520" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="572" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E333456" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19713" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGG</genome_strand>
        <mrna_strand>AGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTANGGCTTGAAGAAAGTTACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246593" ref_strand="+" ref_description="SGN-E246593 [cLEF-45-B24]">
      <seq>agctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19413" stop="20797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19713" g_stop="19950" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="474" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20497" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="549" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E246593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19713" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTT</genome_strand>
        <mrna_strand>AGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330129" ref_strand="+" ref_description="SGN-E330129 [cTOD-5-F23]">
      <seq>agctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19413" stop="20776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19713" g_stop="19950" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="474" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20476" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="528" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E330129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19713" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACT</genome_strand>
        <mrna_strand>AGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554482" ref_strand="+" ref_description="SGN-E554482 [cTSC-4-H11]">
      <seq>gctctagttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19414" stop="21030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19714" g_stop="19950" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="473" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20730" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="781" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E554482" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19714" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGG</genome_strand>
        <mrna_strand>GCTCTAGTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269526" ref_strand="+" ref_description="SGN-E269526 [cLEM-2-E11]">
      <seq>ctccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagtcatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgatcgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19415" stop="20640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19715" g_stop="19950" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="472" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E269526" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19715" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG</genome_strand>
        <mrna_strand>CTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGTCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATCGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208734" ref_strand="+" ref_description="SGN-E208734 [cLEC-51-E3]">
      <seq>tccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19416" stop="20872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19716" g_stop="19950" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="471" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20572" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="621" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E208734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19716" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTA</genome_strand>
        <mrna_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253038" ref_strand="+" ref_description="SGN-E253038 [cLEG-25-C3]">
      <seq>tccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19416" stop="20871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19716" g_stop="19950" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="471" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20571" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="620" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E253038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19716" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACT</genome_strand>
        <mrna_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331449" ref_strand="+" ref_description="SGN-E331449 [cTOD-9-J22]">
      <seq>tccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19416" stop="20795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19716" g_stop="19950" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="471" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20495" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="544" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E331449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19716" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGT</genome_strand>
        <mrna_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331811" ref_strand="+" ref_description="SGN-E331811 [cTOD-7-I22]">
      <seq>tccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgatgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtataatgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19416" stop="20794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19716" g_stop="19950" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="471" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20494" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="543" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E331811" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19716" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAG</genome_strand>
        <mrna_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGATGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAATGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245843" ref_strand="+" ref_description="SGN-E245843 [cLEF-51-G15]">
      <seq>tccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19416" stop="20751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19716" g_stop="19950" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="471" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20451" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="500" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E245843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19716" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAAC</genome_strand>
        <mrna_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239649" ref_strand="+" ref_description="SGN-E239649 [cLED-33-A17]">
      <seq>tccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattntctcaaggtctttgtccatcctcattttcactctcccaccaaaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19416" stop="20630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19716" g_stop="19950" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20330" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="461" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E239649" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19716" e_stop="19950"/>
          <exon e_start="20105" e_stop="20330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCAC</genome_strand>
        <mrna_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTNTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324642" ref_strand="+" ref_description="SGN-E324642 [cTOC-9-I12]">
      <seq>tccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctgctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19416" stop="20579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19716" g_stop="19950" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20279" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="410" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E324642" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19716" e_stop="19950"/>
          <exon e_start="20105" e_stop="20279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAG</genome_strand>
        <mrna_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTGCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332916" ref_strand="+" ref_description="SGN-E332916 [cTOD-19-K2]">
      <seq>tccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttggcaagggtggggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19416" stop="20243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19716" g_stop="19943" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E332916" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19716" e_stop="19943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTT</genome_strand>
        <mrna_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGGCAAGGGTGGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232713" ref_strand="+" ref_description="SGN-E232713 [cLED-8-E13]">
      <seq>tccacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcaaattcaatccccattgttgatttttctctactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19416" stop="20175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19716" g_stop="19875" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E232713" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19716" e_stop="19875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACC</genome_strand>
        <mrna_strand>TCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAAATTCAATCCCCATTGTTGATTTTTCTCTACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271848" ref_strand="+" ref_description="SGN-E271848 [cLEM-8-F11]">
      <seq>cacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19418" stop="20822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19718" g_stop="19950" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="469" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20522" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="569" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E271848" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19718" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAG</genome_strand>
        <mrna_strand>CACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324977" ref_strand="+" ref_description="SGN-E324977 [cTOC-11-B18]">
      <seq>cacttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtctttttttggagagattttctcaaggtctttgtccatcctcattttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19418" stop="20614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19718" g_stop="19950" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20314" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="443" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E324977" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19718" e_stop="19950"/>
          <exon e_start="20105" e_stop="20314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCAC</genome_strand>
        <mrna_strand>CACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTTTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272390" ref_strand="+" ref_description="SGN-E272390 [cLEM-19-E20]">
      <seq>acttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19419" stop="20616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19719" g_stop="19950" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20316" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="444" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E272390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19719" e_stop="19950"/>
          <exon e_start="20105" e_stop="20316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTC</genome_strand>
        <mrna_strand>ACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238300" ref_strand="+" ref_description="SGN-E238300 [cLED-17-C11]">
      <seq>ttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19421" stop="20825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19721" g_stop="19950" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="466" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20525" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="569" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E238300" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19721" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAA</genome_strand>
        <mrna_strand>TTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236055" ref_strand="+" ref_description="SGN-E236055 [cLED-16-L23]">
      <seq>ttgtggttaaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19421" stop="20777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19721" g_stop="19950" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="466" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20477" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="521" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E236055" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19721" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTA</genome_strand>
        <mrna_strand>TTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244879" ref_strand="+" ref_description="SGN-E244879 [cLEF-2-N1]">
      <seq>taaaccatccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattatctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaagaggcatatctgaaagtttaaggctagaagaaagttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19428" stop="20818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19728" g_stop="19950" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="459" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20518" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="555" r_length="96" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E244879" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19728" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTT</genome_strand>
        <mrna_strand>TAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTATCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAAGAGGCATATCTGAAAGTTTAAGGCTAGAAGAAAGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705099" ref_strand="+" ref_description="SGN-E705099 [FA26AF08]">
      <seq>atccaatgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19434" stop="21285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19734" g_stop="19950" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="453" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="784" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="20985" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="846" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E705099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19734" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="20985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAAC</genome_strand>
        <mrna_strand>ATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723547" ref_strand="+" ref_description="SGN-E723547 [FC20DD05]">
      <seq>atgtcaaagagcttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccaaaaaatctgatgaagtcatgtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataaaatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19439" stop="20626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19739" g_stop="19950" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20326" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="435" r_length="223" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E723547" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19739" e_stop="19950"/>
          <exon e_start="20105" e_stop="20326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCA-GTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAA</genome_strand>
        <mrna_strand>ATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAAAAAATCTGATGAAGTCATGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAAATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332412" ref_strand="+" ref_description="SGN-E332412 [cTOD-17-G14]">
      <seq>cttgctgaatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtcttccaggtcaacatcaaggcaaatggattaacgtcaaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19450" stop="21008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19750" g_stop="19950" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="437" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20708" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="723" r_length="286" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E332412" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19750" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCC</genome_strand>
        <mrna_strand>CTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTTCCAGGTCAACATCAAGGCAAATGGATTAACGTCAAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702614" ref_strand="+" ref_description="SGN-E702614 [FA19AH04]">
      <seq>aatctcctgatttgcgttgcataccttacaattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19457" stop="21049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19757" g_stop="19950" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="430" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20749" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="757" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E702614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19757" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCT</genome_strand>
        <mrna_strand>AATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245072" ref_strand="+" ref_description="SGN-E245072 [cLEF-13-B23]">
      <seq>aattatgtttatgactcttccaattcctctgctacaaatgatattgatgattcagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtccgagtatagtgagaaactccgggaagtgacaagaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19486" stop="20772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19786" g_stop="19950" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="401" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20472" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="451" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E245072" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19786" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGT</genome_strand>
        <mrna_strand>AATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCCGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297311" ref_strand="+" ref_description="SGN-E297311 [cLET-29-D14]">
      <seq>cagattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccactgcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19538" stop="20872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19838" g_stop="19950" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="349" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20572" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="499" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E297311" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19838" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTA</genome_strand>
        <mrna_strand>CAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACTGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552219" ref_strand="+" ref_description="SGN-E552219 [cTSB-3-D23]">
      <seq>gattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19540" stop="21360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19840" g_stop="19950" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="347" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="678" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="21060" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="815" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E552219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19840" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="21060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAA</genome_strand>
        <mrna_strand>GATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556462" ref_strand="+" ref_description="SGN-E556462 [cTSD-3-I9]">
      <seq>gattcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19540" stop="21360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19840" g_stop="19950" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="347" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="678" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="21060" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="815" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E556462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19840" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="21060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAA</genome_strand>
        <mrna_strand>GATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254993" ref_strand="+" ref_description="SGN-E254993 [cLEG-33-H18]">
      <seq>ttcaatccccattgttgatttttctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtattagtgagaaactttccgcggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19542" stop="20904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19842" g_stop="19950" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="345" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20604" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="531" r_length="186" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E254993" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19842" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTA-TAGTGAGAAAC--TCCG-GGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGG</genome_strand>
        <mrna_strand>TTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATTAGTGAGAAACTTTCCGCGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262271" ref_strand="+" ref_description="SGN-E262271 [cLEG-56-M2]">
      <seq>tctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgatttaaaattaatcatcggccttttaaagtattgagttcattgttgcccagactattaatagtaagattgaaatagcaagttattttactggttacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19564" stop="21195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19864" g_stop="19950" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="323" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20895" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="797" r_length="474" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E262271" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19864" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACT-GTTACTTC</genome_strand>
        <mrna_strand>TCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCCAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGGTTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253917" ref_strand="+" ref_description="SGN-E253917 [cLEG-28-O8]">
      <seq>tctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgtcggatcctataagatatgggacaagtttcagtactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19564" stop="20951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19864" g_stop="19950" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="323" r_length="236" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20651" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="552" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E253917" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19864" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCAT</genome_strand>
        <mrna_strand>TCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTCGGATCCTATAAGATATGGGACAAGTTTCAGTACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253831" ref_strand="+" ref_description="SGN-E253831 [cLEG-28-B13]">
      <seq>tctctactcacctctcatgattctcatcaacgttctacagccatccacgacctcagcaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19564" stop="20941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19864" g_stop="19950" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="323" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20641" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="542" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E253831" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19864" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACT</genome_strand>
        <mrna_strand>TCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACGACCTCAGCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256685" ref_strand="+" ref_description="SGN-E256685 [cLEG-40-D15]">
      <seq>tctctactcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19564" stop="20830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19864" g_stop="19950" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="323" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20530" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="431" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E256685" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19864" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTT</genome_strand>
        <mrna_strand>TCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701693" ref_strand="+" ref_description="SGN-E701693 [FA16CG04]">
      <seq>ctcacctctcatgattctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaaagagaacagcccatcagctaattatattccaatgaagtacaaggattacttggagatgcaacaaagcagccgaatttatggaaagtccctgcttgaaaaaaagtaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19570" stop="21468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19870" g_stop="19950" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="317" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="648" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="21168" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="894" r_length="246" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E701693" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19870" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="21168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGT-CCTGCTTGGAAAAAGTTAAAAT</genome_strand>
        <mrna_strand>CTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCCTGCTTGAAAAAAAGTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556565" ref_strand="+" ref_description="SGN-E556565 [cTSD-3-O12]">
      <seq>attctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaaagagaacagcccatcagctaattatattccaatgaagtacaaggattacttggagatgcaacaaagcagccgaaattatggaaagtcctgcttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19583" stop="21458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19883" g_stop="19950" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="304" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="635" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="21158" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="870" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E556565" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19883" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="21158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAA</genome_strand>
        <mrna_strand>ATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAAATTATGGAAAGTCCTGCTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699570" ref_strand="+" ref_description="SGN-E699570 [FA10CC01]">
      <seq>cttctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgatttaaaattaatcatcggccttttaaagtattgagttcattgttgccaagactattaatagtaagattgaaatagcaagttattttactgttacttcaagaccaaaattttatttaatatggtagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19584" stop="21281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19883" g_stop="19950" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="304" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20981" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="863" r_length="559" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E699570" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19883" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAG</genome_strand>
        <mrna_strand>CTTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377905" ref_strand="+" ref_description="SGN-E377905 [TUS-20-H18]">
      <seq>ttctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19584" stop="21256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19884" g_stop="19950" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="303" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="634" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="20956" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="667" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E377905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19884" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="20956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATG</genome_strand>
        <mrna_strand>TTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233236" ref_strand="+" ref_description="SGN-E233236 [cLED-6-M9]">
      <seq>ttctcatcaacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19584" stop="20952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19884" g_stop="19950" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="303" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20652" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="533" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E233236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19884" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATA</genome_strand>
        <mrna_strand>TTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390571" ref_strand="+" ref_description="SGN-E390571 [TUS-44-I21]">
      <seq>caacgttctagagccatctaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacgggataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19591" stop="20623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19891" g_stop="19950" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20323" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="279" r_length="219" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E390571" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19891" e_stop="19950"/>
          <exon e_start="20105" e_stop="20323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACC</genome_strand>
        <mrna_strand>CAACGTTCTAGAGCCATCTACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGGATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377084" ref_strand="+" ref_description="SGN-E377084 [TUS-21-G19]">
      <seq>aacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19592" stop="21265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19892" g_stop="19950" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="295" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="626" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="20965" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="668" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E377084" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19892" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="20965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCA</genome_strand>
        <mrna_strand>AACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238138" ref_strand="+" ref_description="SGN-E238138 [cLED-22-H12]">
      <seq>aacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19592" stop="20952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19892" g_stop="19950" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="295" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20652" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="525" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E238138" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19892" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATA</genome_strand>
        <mrna_strand>AACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236517" ref_strand="+" ref_description="SGN-E236517 [cLED-13-G5]">
      <seq>aacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19592" stop="20912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19892" g_stop="19950" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="295" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20612" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="485" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E236517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19892" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCA</genome_strand>
        <mrna_strand>AACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231387" ref_strand="+" ref_description="SGN-E231387 [cLED-10-L7]">
      <seq>aacgttctacagccatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagcgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19592" stop="20828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19892" g_stop="19950" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="295" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20528" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="401" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E231387" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19892" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGAT</genome_strand>
        <mrna_strand>AACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGCGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239935" ref_strand="+" ref_description="SGN-E239935 [cLED-29-K24]">
      <seq>acggtctacattcatccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccataaaatctgatgaagtcagagattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacatgtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattgtctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatttgaaagtttagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19593" stop="20802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19893" g_stop="19950" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="294" r_length="236" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20502" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="374" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E239935" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19893" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGC</genome_strand>
        <mrna_strand>ACGGTCTACATTCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCATAAAATCTGATGAAGTCAGAGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACATGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTGTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATTTGAAAGTTTAGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701419" ref_strand="+" ref_description="SGN-E701419 [FA15DF10]">
      <seq>cacccttccaccacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaaagagaacagcccatcagctaattatattccaatgaagtacaaggattacttggagatgcaacaaagcagccgaatttatggaaagtcctgcttggaaaaagttaaatccaaaggagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19601" stop="21480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19901" g_stop="19950" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="286" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="617" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="21180" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="873" r_length="256" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E701419" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19901" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="21180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTG</genome_strand>
        <mrna_strand>CACCCTTCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTT-AAATCCAAAGGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246080" ref_strand="-" ref_description="SGN-E246080 [cLEF-40-E15]">
      <seq>accacctcaccaaagcttgtcaaggttggggcttcttcatggtagtgaaccccggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19610" stop="21046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19910" g_stop="19950" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="277" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20746" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="601" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E246080" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246080" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19910" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCA</genome_strand>
        <mrna_strand>ACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCCCGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260471" ref_strand="+" ref_description="SGN-E260471 [cLEG-54-E11]">
      <seq>aaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaaagagaacagcccatcagctaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19621" stop="21384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19921" g_stop="19950" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="266" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="597" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20924" g_stop="21084" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="758" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E260471" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19921" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="21084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTA</genome_strand>
        <mrna_strand>AAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255889" ref_strand="+" ref_description="SGN-E255889 [cLEG-35-N17]">
      <seq>aaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19621" stop="21052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19921" g_stop="19950" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="266" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20752" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="596" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E255889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19921" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGA</genome_strand>
        <mrna_strand>AAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258155" ref_strand="+" ref_description="SGN-E258155 [cLEG-49-G15]">
      <seq>aaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagagagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccangttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19621" stop="21049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19921" g_stop="19950" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="266" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20749" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="593" r_length="327" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E258155" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19921" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCT</genome_strand>
        <mrna_strand>AAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAGAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCANGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252610" ref_strand="+" ref_description="SGN-E252610 [cLEG-20-B21]">
      <seq>aaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccaccttattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttgggtaataccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19621" stop="21039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19921" g_stop="19950" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="266" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20739" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="583" r_length="317" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E252610" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19921" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCG</genome_strand>
        <mrna_strand>AAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTTATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGGTAATACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258319" ref_strand="+" ref_description="SGN-E258319 [cLEG-49-H15]">
      <seq>aaagcttgtcaaggttggggcttcttcatggtagtgaaccacggcataccagaaaatctgatgaagtcagtgatatgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19621" stop="20792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19921" g_stop="19950" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20340" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="267" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20423" g_stop="20492" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="337" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E258319" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19921" e_stop="19950"/>
          <exon e_start="20105" e_stop="20340"/>
          <exon e_start="20423" e_stop="20492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTGTCAAGGTTGGGGCTTCTTCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGAT-TGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAA</genome_strand>
        <mrna_strand>AAAGCTTGTCAAGGTTGGGGCTTCTTCATG..........................................................................................................................................................GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATATGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254496" ref_strand="+" ref_description="SGN-E254496 [cLEG-29-I11]">
      <seq>ccatggtagtgaaccactgcataccataaaatctgatgaagtcagtgatagattgcactcatgaattactcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactaatacagaaaatgtcttcttttggagagattttctcaaggactttgtccatcctcattttcactctaccaccaaaccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19802" stop="20631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19946" g_stop="19950" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20105" g_stop="20331" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="232" r_length="227" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E254496" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19946" e_stop="19950"/>
          <exon e_start="20105" e_stop="20331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGTACGTATTACCAACTAATTTTGAAGTCACGTTAGAACCTATATATGCACATAAAAAAATAAGTTAACAACTTGAAAAACAAATTGAAACAGAGGAAGTATAATATAATAGTGGTATTCTGTTAATTCGTTTTGCGCAAATTAATTAAGTGCAGGTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACA</genome_strand>
        <mrna_strand>CCATG..........................................................................................................................................................GTAGTGAACCACTGCATACCATAAAATCTGATGAAGTCAGTGATAGATTGCACTCATGAATTACTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAATACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGACTTTGTCCATCCTCATTTTCACTCTACCACCAAACCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244670" ref_strand="+" ref_description="SGN-E244670 [cLED-38-O11]">
      <seq>cacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19814" stop="20950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20114" g_stop="20340" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20423" g_stop="20650" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="455" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E244670" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20114" e_stop="20340"/>
          <exon e_start="20423" e_stop="20650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCA</genome_strand>
        <mrna_strand>CACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244554" ref_strand="+" ref_description="SGN-E244554 [cLED-38-O12]">
      <seq>cacggcataccacaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagttgcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtgcatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttgaagaaagatttacagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaaccgtgactagcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19814" stop="20903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20114" g_stop="20340" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20423" g_stop="20603" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="408" r_length="181" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E244554" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20114" e_stop="20340"/>
          <exon e_start="20423" e_stop="20603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATG</genome_strand>
        <mrna_strand>CACGGCATACCACAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTGCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTGCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGAAGAAAGATTTACAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCGTGACTAGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243704" ref_strand="+" ref_description="SGN-E243704 [cLED-35-I15]">
      <seq>cacggcataccagaaaatctgatgaagtcagtgattgattgcactcatgaatttttcaatttaccagaggaagaaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagatacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19814" stop="20897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20114" g_stop="20340" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20423" g_stop="20597" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="402" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E243704" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20114" e_stop="20340"/>
          <exon e_start="20423" e_stop="20597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTA</genome_strand>
        <mrna_strand>CACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGATACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270017" ref_strand="+" ref_description="SGN-E270017 [cLEM-7-L10]">
      <seq>aaaaacacaagtttactgggaagcatgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgatttaaaattaatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19887" stop="21114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20187" g_stop="20340" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20423" g_stop="20814" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="546" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E270017" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20187" e_stop="20340"/>
          <exon e_start="20423" e_stop="20814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATC</genome_strand>
        <mrna_strand>AAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555178" ref_strand="+" ref_description="SGN-E555178 [cTSC-6-K21]">
      <seq>atgtgttggatcctataagatatgggacaagtttcaatactagtacagaaaatgtcttcttttggagagattttctcaaggtctttgtccatcctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaaagagaacagcccatcagctaattatattccaatgaagtacaaggattacttggagatgcaacaaagcagccgaatttatggaaagtcctgcttggaaaaagttaaaatccaaaggagctgagtgtttctatgtatattttcctcttgtttccaagtgtttgatgatataaaagtattatggaacttcaataatatttatgaatactatagntgtacgtgtaatcttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="19911" stop="21590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20211" g_stop="20340" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="461" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20924" g_stop="21290" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="828" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E555178" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20211" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="21290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGTTGTACGTGTAATCTTTTAA</genome_strand>
        <mrna_strand>ATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGNTGTACGTGTAATCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232931" ref_strand="+" ref_description="SGN-E232931 [cLED-8-P6]">
      <seq>ctcattttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgatttaaaattaatcatcggccttttaaagtattgagttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20004" stop="21137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20304" g_stop="20340" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20423" g_stop="20837" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="452" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E232931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20304" e_stop="20340"/>
          <exon e_start="20423" e_stop="20837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCA</genome_strand>
        <mrna_strand>CTCATTTTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237448" ref_strand="+" ref_description="SGN-E237448 [cLED-19-E11]">
      <seq>ttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20010" stop="21329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20310" g_stop="20340" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="362" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20924" g_stop="21029" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="468" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E237448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20310" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="21029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAA</genome_strand>
        <mrna_strand>TTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232860" ref_strand="+" ref_description="SGN-E232860 [cLED-8-A14]">
      <seq>ttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatcttgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20010" stop="21327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20310" g_stop="20340" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="362" r_length="331" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20924" g_stop="21027" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="466" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E232860" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20310" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="21027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACAC</genome_strand>
        <mrna_strand>TTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTTGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237754" ref_strand="+" ref_description="SGN-E237754 [cLED-19-N4]">
      <seq>ttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20010" stop="21300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20310" g_stop="20340" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20423" g_stop="20753" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="362" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20924" g_stop="21000" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="439" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E237754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20310" e_stop="20340"/>
          <exon e_start="20423" e_stop="20753"/>
          <exon e_start="20924" e_stop="21000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGT</genome_strand>
        <mrna_strand>TTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243571" ref_strand="+" ref_description="SGN-E243571 [cLED-34-A6]">
      <seq>ttcactctcccaccaaaccacaaacctacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20010" stop="20955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20310" g_stop="20340" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20423" g_stop="20655" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="264" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E243571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20310" e_stop="20340"/>
          <exon e_start="20423" e_stop="20655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTCCCACCAAACCACAAACCTACAGGTAAAACTTATATATACTGACAGTATAACGCAATCAATTATCCCTGTTAATGTTAATAACTTGATAGTGTTAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACC</genome_strand>
        <mrna_strand>TTCACTCTCCCACCAAACCACAAACCTACAG..................................................................................GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232746" ref_strand="+" ref_description="SGN-E232746 [cLED-8-C4]">
      <seq>taaatttaacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgatttaaaattaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20111" stop="21113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20411" g_stop="20813" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E232746" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20411" e_stop="20813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCAT</genome_strand>
        <mrna_strand>TAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239436" ref_strand="+" ref_description="SGN-E239436 [cLED-23-M21]">
      <seq>taaatttaacaggggtattatgtcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgatttaaaattaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20111" stop="21109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20411" g_stop="20811" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E239436" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20411" e_stop="20811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATC</genome_strand>
        <mrna_strand>TAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393639" ref_strand="+" ref_description="SGN-E393639 [TUS-42-M21]">
      <seq>tcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgatttaaaattaatcatcggccttttaaagtattgagttcattgttgccaagactattaatagtaagattgaaatagcaagttattttactgttacttcaagaccaaaattttatttaatatggtagatatttagtaatgggaagtacaaaagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagaagtggtagctcatggtccatcattagacccatttgtaaagccagcttctccattgatggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20133" stop="21360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20433" g_stop="21060" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E393639" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20433" e_stop="21060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAA</genome_strand>
        <mrna_strand>TCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAAAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGAAGTGGTAGCTCATGGTCCATCATTAGACCCATTTGTAAAGCCAGCTTCTCCATTGATGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396424" ref_strand="+" ref_description="SGN-E396424 [TUS-40-N22]">
      <seq>tcggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgatttaaaattaatcatcggccttttaaagtattgagttcattgttgccaagactattaatagtaagattgaaatagcaagttattttactgttacttcaagaccaaaattttattttatatggtagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20133" stop="21294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20433" g_stop="20994" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E396424" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20433" e_stop="20994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATC</genome_strand>
        <mrna_strand>TCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTTATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255915" ref_strand="+" ref_description="SGN-E255915 [cLEG-35-L6]">
      <seq>cggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgatttaaaattaatcatcggccttttaaagtattgagttcattgttgccaagactattaatagtaagattgaaatagcaagttattttactgttacttcaagaccaaaattttatttaatatggtagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaaagagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20134" stop="21367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20434" g_stop="21067" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E255915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20434" e_stop="21067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAAC</genome_strand>
        <mrna_strand>CGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254069" ref_strand="+" ref_description="SGN-E254069 [cLEG-34-D1]">
      <seq>cggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgatttaaaattaatcatcggccttttaaagtattgagttcattgttgccaagactattaatagtaagattgaaatagcaagttattttactgttacttcaagaccaaaattttatttaatatggtagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20134" stop="21330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20434" g_stop="21030" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E254069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20434" e_stop="21030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAAT</genome_strand>
        <mrna_strand>CGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255238" ref_strand="+" ref_description="SGN-E255238 [cLEG-31-N23]">
      <seq>cggagtatagtgagaaactccgggaagtgacaagaaagttactaggagggatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgatttaaaattaatcatcggccttttaaagtattgagttcattgttgccaagactattaatagtaagattgaaatagcaagttattttactgttacttcaagaccaaaattttatttaatatggtagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcaatagtggtagctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20134" stop="21311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20434" g_stop="21011" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E255238" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20434" e_stop="21011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATG</genome_strand>
        <mrna_strand>CGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGGATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAATAGTGGTAGCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256204" ref_strand="+" ref_description="SGN-E256204 [cLEG-37-K8]">
      <seq>cggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgatttaaaattaatcatcggccttttaaagtattgagttcattgttgccaagactattaatagtaagattgaaatagcaagttattttactgttacttcaagaccaaaattttatttaatatggtagatatttagtaatgggaagtacaagagcaacatgcatagagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20134" stop="21267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20434" g_stop="20967" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E256204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20434" e_stop="20967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGT</genome_strand>
        <mrna_strand>CGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256097" ref_strand="+" ref_description="SGN-E256097 [cLEG-37-K10]">
      <seq>cggagtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgatttaaaattaatcatcggccttttaaagtattgagttcattgttgccaagactattaatagtaagattgaaatagcaagttattttactgttacttcaagaccaaaattttatttaatatggtagatatttagtaatgggaagtacaagagcaacatgcatagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20134" stop="21263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20434" g_stop="20963" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E256097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20434" e_stop="20963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAG</genome_strand>
        <mrna_strand>CGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264624" ref_strand="+" ref_description="SGN-E264624 [cLEG-72-A4]">
      <seq>gtatagtgagaaactccgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgatttaaaattaatcatcggccttttaaagtattgagttcattgttgccaagactattaatagtaagattgaaatagcaagttattttactgttacttcaagaccaaaattttatttaatatggtagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20138" stop="21330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20438" g_stop="21030" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E264624" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20438" e_stop="21030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAAT</genome_strand>
        <mrna_strand>GTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261749" ref_strand="+" ref_description="SGN-E261749 [cLEG-61-H18]">
      <seq>tcgggaagtgacaagaaagttactaggaggcatatctgaaagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcagggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaaagagaacagcccatcagctaattatattccaatgaagtacaaggattacttggagatgcaacaaagcagccgaatttatggaaagtcctgcttggaaaaagttaaaatccaaaggagctgagtggttctatgtatattttcctcttgtttccaagtgtttgatgatataaaagtattatggaacttcaataatatttatgaatactataggtgtacgtgtaatcttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20154" stop="21590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20453" g_stop="20753" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20924" g_stop="21290" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="668" r_length="367" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E261749" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20453" e_stop="20753"/>
          <exon e_start="20924" e_stop="21290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGTTGTACGTGTAATCTTTTAA</genome_strand>
        <mrna_strand>TCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGGTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGGTGTACGTGTAATCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240411" ref_strand="+" ref_description="SGN-E240411 [cLED-25-N23]">
      <seq>gttactaggaggcatatctgagagtttagggcttgaagaaagttacttggagaaagatttagagttggaatcaaggcttcaaatcttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggataataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaaagagaacagcccatcagctaattatattccaatgaagtacaaggattacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20171" stop="21413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20471" g_stop="20753" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20924" g_stop="21113" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="473" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E240411" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20471" e_stop="20753"/>
          <exon e_start="20924" e_stop="21113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGG</genome_strand>
        <mrna_strand>GTTACTAGGAGGCATATCTGAGAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAAGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGATAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715104" ref_strand="+" ref_description="SGN-E715104 [FB13BD08]">
      <seq>cttcgttggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaaagagaacagcccatcagctaattatattccaatgaagtacaaggattacttggagatgcaacaaagcagccgaatttatggaaagtcctgcttggaaaaagttaaaatccaaaggagctgagtgtttctatgtatattttcctcttgtttccaagtgtttgatgatataaaagtattatggaacttcaataatatttatgaatactatagttgtacgtgtaatcttttaattagtgaacgttttagccgtgtctgtttatatgtatatcttcaaattaaatgtcattttcggataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20255" stop="21658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20555" g_stop="20753" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20924" g_stop="21356" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="632" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="645"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E715104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20555" e_stop="20753"/>
          <exon e_start="20924" e_stop="21356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGTTGTACGTGTAATCTTTTAATTAGTGAACGTTTTAGCCGTGTCTGTTTATATGTATATCTTCAAATTAAATGTCATTTTCGGATAA</genome_strand>
        <mrna_strand>CTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGTTGTACGTGTAATCTTTTAATTAGTGAACGTTTTAGCCGTGTCTGTTTATATGTATATCTTCAAATTAAATGTCATTTTCGGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377904" ref_strand="+" ref_description="SGN-E377904 [TUS-20-H18](-)">
      <seq>ttggaaattactatccaccttgtcctcaacctaaataagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaaagagaacagcccatcagctaattatattccaatgaagtacaaggattacttggagatgcaacaaagcagccgaatttatggaaagtcctgcttggaaaaagttaaaatccaaaggagctgagtgtttctatgtatattttcctcttgtttccaagtgtttgatgatataaaagtattatggaacttcaataatatttatgaatactatagttgtacgtgtaatcttttaattagtgaacgttttagccgtgtctgtttatatgtatatcttcaaattaaatgtcattttcggataagagggtgatgctagtgaagtagggtcattccatatatatgtccaattgatgactcttcctactcaaattgaagattcaattgcttctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20260" stop="21748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20560" g_stop="20753" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20924" g_stop="21449" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="720" r_length="526" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E377904" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20560" e_stop="20753"/>
          <exon e_start="20924" e_stop="21449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGTTGTACGTGTAATCTTTTAATTAGTGAACGTTTTAGCCGTGTCTGTTTATATGTATATCTTCAAATTAAATGTCATTTTCGGATAAGAGGGTGATGCTAGTGAAGTAGGGTCATTCCATATATATGTCCAATTGATGACTCTTCCTACTCAAATTGAAGATTCAATTGCTTCTCCAAAC</genome_strand>
        <mrna_strand>TTGGAAATTACTATCCACCTTGTCCTCAACCTAAATAAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGTTGTACGTGTAATCTTTTAATTAGTGAACGTTTTAGCCGTGTCTGTTTATATGTATATCTTCAAATTAAATGTCATTTTCGGATAAGAGGGTGATGCTAGTGAAGTAGGGTCATTCCATATATATGTCCAATTGATGACTCTTCCTACTCAAATTGAAGATTCAATTGCTTCTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235671" ref_strand="+" ref_description="SGN-E235671 [cLED-15-D21]">
      <seq>tggaaattactatccaccttgtcctcaacctgaactagcaatgggtatgccacctcattcagatcaaggccttttaacacttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtctacagtcacaaagacgcgtgatttaaaattaatcatcggccttttaaagtattgagttcattgttgccaagactattaatagtaagattgaaatagcaagttattttactgttacttcaagaccaaaattttatttaatatggtagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaaagagaacagcccatcagctaattatattccaatgaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20261" stop="21399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20561" g_stop="21099" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E235671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20561" e_stop="21099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTA</genome_strand>
        <mrna_strand>TGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377083" ref_strand="+" ref_description="SGN-E377083 [TUS-21-G19](-)">
      <seq>aagggcctttttaacccttctcattcataaccaagttggaggtttccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaaagagaacagcccatcagctaattatattccaatgaagtacaaggattacttggagatgcaacaaagcagccgaatttatggaaagtcctgcttggaaaaagttaaaatccaaaggagctgagtgtttctatgtatattttcctcttgtttccaagtgtttgatgatataaaagtattatggaacttcaataatatttatgaatactatagttgtacgtgtaatcttttaattagtgaacgttttagccgtgtctgtttatatgtatatcttcaaattaaatgtcattttcggataagagggtgatgctagtgaagtagggtcattccatatatatgtccaattgatgactcttcctactcaaattgaagattcaattgcttctccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20326" stop="21748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20625" g_stop="20753" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20924" g_stop="21449" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="656" r_length="526" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="668"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E377083" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20625" e_stop="20753"/>
          <exon e_start="20924" e_stop="21449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGCCTTT-TAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGTTGTACGTGTAATCTTTTAATTAGTGAACGTTTTAGCCGTGTCTGTTTATATGTATATCTTCAAATTAAATGTCATTTTCGGATAAGAGGGTGATGCTAGTGAAGTAGGGTCATTCCATATATATGTCCAATTGATGACTCTTCCTACTCAAATTGAAGATTCAATTGCTTCTCCAAAC</genome_strand>
        <mrna_strand>AAGGGCCTTTTTAACCCTTCTCATTCATAACCAAGTTGGAGGTTTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGTTGTACGTGTAATCTTTTAATTAGTGAACGTTTTAGCCGTGTCTGTTTATATGTATATCTTCAAATTAAATGTCATTTTCGGATAAGAGGGTGATGCTAGTGAAGTAGGGTCATTCCATATATATGTCCAATTGATGACTCTTCCTACTCAAATTGAAGATTCAATTGCTTCTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251373" ref_strand="-" ref_description="SGN-E251373 [cLEG-23-H24]">
      <seq>ttttctcattcataaccaagttggaggtctccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctctcttggttaataccggcgatcatctcgagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaccaacaaagtaccaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaaagagaacagcccatcagctaattatattccaatgaagtacaaggattacttggagatgcaacaaagcagccgaatttatggaaagtcctgcttggaaaaagttaaaatccaaaggagctgagtgtttctatgtatattttcctcttgtttccaagtgtttgatgatataaaagtattatggaacttcaataatatttatgaataaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20341" stop="21569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20639" g_stop="20753" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20924" g_stop="21261" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="453" r_length="338" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="477"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E251373" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251373" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20639" e_stop="20753"/>
          <exon e_start="20924" e_stop="21261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGA</genome_strand>
        <mrna_strand>TTTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGACCAACAAAGTACCAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393638" ref_strand="+" ref_description="SGN-E393638 [TUS-42-M21](-)">
      <seq>ccaagttggaggtttccaggttcaacatcaaggcaaatggattaacgtcaaggcccttcctaactactctcttttggttaataccggcgatcatctcgaggtaattaaatccatttttcatgtttacagtcacaaagacgcgtgatttaaaattaatcatcggccttttaaagtattgagttcattgttgccaagactattaatagtaagattgaaatagcaagttattttactgttacttcaagaccaaaattttatttaatatggtagatatttagtaatgggaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttttccattgatggaaaaagagaacagcccatcagctaattatattccaatgaagtacaaggattacttggagatgcaacaaagcagccgaatttatggaaagtcctgcttggaaaaagttaaaatccaaaggagctgagtgtttttatgtatattttcctcttgtttccaagtgtttgatgatataaaagtattatggaacttcaataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20354" stop="21554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20654" g_stop="21251" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="620"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E393638" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20654" e_stop="21251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATA</genome_strand>
        <mrna_strand>CCAAGTTGGAGGTTTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTTTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTTTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTTTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTTTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236235" ref_strand="-" ref_description="SGN-E236235 [cLED-20-L7]">
      <seq>ctctctcttggttaataccggcgatcatctcgagatatttagtaatggaaagtacaagagcaacatgcatagagcagtggtgaacaacaaagtaacaaggatatcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatgaaaaaagagaacagcccatcagctaattatattccaatgaagtacaaggattacttggagatgcaacaaagcagccgaatttatggaaagtcctgcttggaaaaagttaaaatccaaaggagctgagtgtttctatgtatattttcctcttgtttccaagtgtttgatgatataaaagtattatggatcttcaataatatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20420" stop="21559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20720" g_stop="20753" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20924" g_stop="21259" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="370" r_length="336" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E236235" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236235" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20720" e_stop="20753"/>
          <exon e_start="20924" e_stop="21259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTAT</genome_strand>
        <mrna_strand>CTCTCTCTTGGTTAATACCGGCGATCATCTCGAG..........................................................................................................................................................................ATATTTAGTAATGGAAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGAAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGATCTTCAATAATATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217023" ref_strand="+" ref_description="SGN-E217023 [cLEL-1-I10](-)">
      <seq>tcagtagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaaagagaacagcccatcagctaattatattccaatgaagtacaaggattacttggagatgcaacaaagcagccgaattttatggaaagtcctgcttggaaaaagttaaaatccaaaggagctgagtgtttctatgtatattttcctcttgtttccaagtgtttgatgatataaaagtatcccggaacttcaataatatttatgaatactataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20693" stop="21569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20993" g_stop="21269" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="279" polyA_stop="298"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E217023" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20993" e_stop="21269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAA-TTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATA</genome_strand>
        <mrna_strand>TCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATCCCGGAACTTCAATAATATTTATGAATACTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297727" ref_strand="+" ref_description="SGN-E297727 [cLET-28-B20]">
      <seq>tagtggtagctcatggtccatcattagacacaattgtaaagccagcttctccattgatggaaaaagagaacagcccatcagctaattatattccaatgaagtacaaggattacttggagatgcaacaaagcagccgaatttatggaaagtcctgcttggaaaaagttaaaatccaaaggagctgagtgtttctatgtatattttcctcttgtttccaagtgtttgatgatataaaagtattatggaacttcaataatatttatgaatactatagttgtacgtgtaatcttttaattagtgaacgttttagccgtgtctgtttatatgtatatcttcaaattaaatgtcattttcggataagagggtgatgctagtgaagtagggtcattccatatatatgtccaattgatgactcttcctactcaaattgaagattcaattgcttctccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20697" stop="21748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20997" g_stop="21449" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E297727" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20997" e_stop="21449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGTTGTACGTGTAATCTTTTAATTAGTGAACGTTTTAGCCGTGTCTGTTTATATGTATATCTTCAAATTAAATGTCATTTTCGGATAAGAGGGTGATGCTAGTGAAGTAGGGTCATTCCATATATATGTCCAATTGATGACTCTTCCTACTCAAATTGAAGATTCAATTGCTTCTCCAAAC</genome_strand>
        <mrna_strand>TAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGTTGTACGTGTAATCTTTTAATTAGTGAACGTTTTAGCCGTGTCTGTTTATATGTATATCTTCAAATTAAATGTCATTTTCGGATAAGAGGGTGATGCTAGTGAAGTAGGGTCATTCCATATATATGTCCAATTGATGACTCTTCCTACTCAAATTGAAGATTCAATTGCTTCTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390570" ref_strand="+" ref_description="SGN-E390570 [TUS-44-I21](-)">
      <seq>aatttatggaaagtcctgcttggaaaaagtaaaaatccaaaggagctgagtgtttctaagtatattttcctcttgtttccaagtgtatgatgatataaaagtattatggaacttcaataatatttatgaatactatagttgtacgtgtaatcttttaattagtgaacgttttagccgtgtctgtttatatgtatatattcaaattaaatgtcatcttcggataagagggtgatgctagtgaagtagggtcattccatatatatgtccaaaaaaggactcttcttactcaaattgaagattcaattgttaaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="20833" stop="89302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21133" g_stop="21449" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21450" i_stop="22139" i_length="690">
            <donor d_prob="0.642" d_score="0.80"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22140" g_stop="22152" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="330" r_length="13" r_score="0.538"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E390570" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21133" e_stop="21449"/>
          <exon e_start="22140" e_stop="22152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGTTGTACGTGTAATCTTTTAATTAGTGAACGTTTTAGCCGTGTCTGTTTATATGTATATCTTCAAATTAAATGTCATTTTCGGATAAGAGGGTGATGCTAGTGAAGTAGGGTCATTCCATATATATGTCCAATTGATGACTCTTCCTACTCAAATTGAAGATTCAATTGCTTCTCCAAACGTCCTACGTTTTTGTTTTTATTTATTAGTTTTGGTGTCTTTTTTCTTTCTAGAGAATTCTACATATACTCACAATTTGTTTGTGTAAGTGTGAAGTAGGCAAAATCAAAAGATTTGAAGTTTATAAATTTGATTTACAACTTTTAACAAGTGTCAAAATTAACAAACAAGTACGGATATTCAATTTTTCTTTTAAGAAGTAACAAATCCTAGCAAACTTTTCTTTGAAAATCTGATTTGGGAATTGTGTTCAAAACAATCTTATTTGTACAGTTTTTCGTTGACACAAGATTATGTTTGGTTATTTGCCCAAAATTGGACAACTTTCACATATTCGTATAAAATTTGCTTTGCATACAATTGAATTGAAGTAAAATGTTTGTATATTGTATAATTATAAGTGTATAGGAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAACAGAAACACAATTTATACACTTCTGTTGTATAAAGCGAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGCTGTCCTTTTTCGCTGCAATATTTGTATAAAAATTTGCATTTGTCTACAATTGAATCGATGTAAAATATTTGTATATTCTATAATTAAGTATATAGCACAAAGATATATATTTTTGCATGTGTATATACTATTTTTTCTCTCGCTTTGTATAAAACAGAAACACAATTTAT</genome_strand>
        <mrna_strand>AATTTATGGAAAGTCCTGCTTGGAAAAAGTAAAAATCCAAAGGAGCTGAGTGTTTCTAAGTATATTTTCCTCTTGTTTCCAAGTGTATGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGTTGTACGTGTAATCTTTTAATTAGTGAACGTTTTAGCCGTGTCTGTTTATATGTATATATTCAAATTAAATGTCATCTTCGGATAAGAGGGTGATGCTAGTGAAGTAGGGTCATTCCATATATATGTCCAAAAAAGGACTCTTCTTACTCAAATTGAAGATTCAATTGTTAAACCAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E687838" ref_strand="+" ref_description="SGN-E687838 [T3_tus_81_E17]">
      <seq>tttgggtctgttttattatgtcagagaaagttgagtggagaaaaacatgcttgtaagactttgcttaagggggaagagatcattcaccgtgaagttgagattatgcagcatctctctgggcatccaggtgttgtgacactgaaggctgtgtatgaggatgctgaatctttttatcttgtcatggaactttgctcaggaggaaggttgcttgaccaaatggctagggttgggcgataccctgagcaacaagctgctaatgtgatcaaagagctcatgctggttatcagatactgccatgagatgggtgttgtgcacagggacataaagcctgaaaatgtcctccttacaacctctggacaagttaaggtttcagactttgggctagctgtgagaatttcacatggtcagagcttgactggagtagttggaagtccagcttatgttgctcctgaggttctgctaggtgattacacagagaaagtggacatatggagtgtaggtgtcctcctacatgcacttttggtgggcttgctcccatttcaaggtgattctttggaatctatattcagtgcaattaaggaggagaaccttgatttcagtggtggagcttgggcatctgtatcacaaccagctcgtgatctgctttcttgcatgatgacaagggatgtctcagcaaggtacagtgctgacgaagtactaagacatccatggattttgttttacactgcacccacattgaagaatcatgcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="24317" stop="27715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24617" g_stop="25019" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25020" i_stop="26021" i_length="1002">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26022" g_stop="26318" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="700" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26319" i_stop="27362" i_length="1044">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27363" g_stop="27415" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="753" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E687838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24617" e_stop="25019"/>
          <exon e_start="26022" e_stop="26318"/>
          <exon e_start="27363" e_stop="27415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGTCTGTTTTATTATGTCAGAGAAAGTTGAGTGGAGAAAAACATGCTTGTAAGACTTTGCTTAAGGGGGAAGAGATCATTCACCGTGAAGTTGAGATTATGCAGCATCTCTCTGGGCATCCAGGTGTTGTGACACTGAAGGCTGTGTATGAGGATGCTGAATCTTTTTATCTTGTCATGGAACTTTGCTCAGGAGGAAGGTTGCTTGACCAAATGGCTAGGGTTGGGCGATACCCTGAGCAACAAGCTGCTAATGTGATCAAAGAGCTCATGCTGGTTATCAGATACTGCCATGAGATGGGTGTTGTGCACAGGGACATAAAGCCTGAAAATGTCCTCCTTACAACCTCTGGACAAGTTAAGGTTTCAGACTTTGGGCTAGCTGTGAGAATTTCACATGGTAATTCAAGATGACCTCCTCTATTTGAATTTGACTTGTCGGTATTGTTCATATTATCCTATTTAGTGTGCATGAACCGGATACCACACCCTATATTATGATGCCTACCTGTTGTTGTCTGACTAGCTGTTTTTAGTCTTAGGCTGAAATTGTTATTTGTGCTCCTCAAGTGCGGTGCTTCTTGATCTGCATTACTCCTTGCACCCAAGAAAGATGACCTTATATGCGGATTCAGAAACATCTTTGTTTGATTGCCTTCATATACAATTATTTCCTTTTATTTTGCAATTAAATATGCTCTTCAGAAAACTGGAATCACTTGTCCACATATTTTCCAAGTTTCTTAACTTTTATTTGCAGAAATAGATTGGAACATTTCATACTTTACTCGAAACTTGATGGGAATGAAATGTTGTAGAAAGTGCATTATACCCACCTTCAATCTATCCTAATGTGCATTCAAATATGTCTTTTTCCAGTATACTCCTTGTATGTGCGGTTATTCCTTTTTTGCTAGAAGTTGACTTTACCTTTTAAAAAAATGTGCTAATTCATGATAAATTCATATGTATCTTCACTTTTTGCACCATTTCCAATTAGATTCAATCAAAGGACTTCTGAATTTTGTAAAAACTGACAGTTCTTATCTTAAACCCTTGATTTTTATCCCTACCCTTGCTTTGTCATTTTACTGAGTGTAGTTTGGGAGGTGTTTACCTCAGATTATGCACATGAAAGACTAGAAACATTTTGGAATTTAATGCAATGTTGGATGATGGTTCTTTACATGCTGGTCTCAACTCTTTGTATCCAGGATGTTAGCTATGTTCATGTTGTCTCTTATGAGCGCATCATTAAATTTCTATTTTGAGTCATTCTAGTTCTTCTTGGAGGATCCATTGCACTAAACTGGGTGAAGCGGTTTTGTGTTTGTGTGTGTGTGTTTTTCTTTTGTACGTTAATGATGTATACGAAATGCTCCATTCTTTGATGTGCTCGTAGGTCAGAGCTTGACTGGAGTAGTTGGAAGTCCAGCTTATGTTGCTCCTGAGGTTCTGCTAGGTGATTACACAGAGAAAGTGGACATATGGAGTGTAGGTGTCCTCCTACATGCACTTTTGGTGGGCTTGCTCCCATTTCAAGGTGATTCTTTGGAATCTATATTCAGTGCAATTAAGGAGGAGAACCTTGATTTCAGTGGTGGAGCTTGGGCATCTGTATCACAACCAGCTCGTGATCTGCTTTCTTGCATGATGACAAGGGATGTCTCAGCAAGGTACAGTGCTGACGAAGTACTAAGTGAGTAGCCTTTCAGATCTCTTCTATTGTCAACTTACACCTTATATTCTTTTATCATTTTTTTAAATTGAAATGTAATCATCAAAGAGAACTAGGACTGGATGAAGTGCTTTGGTTCTACCTCTGGAGCATTATTTAGCAGCATCTGTGAGCCTTACAAGTAGAAAGGGAAATGTGACTGATTATTCGTCTGCTCTGTGAAATGACAATGCTGGTTTTTCTTTTAAGCAGGTCTATGCCTATGCCACATCCCACCTTGGGGTGCGCGGAGGGTGATAGATTTGTGCTTAATCGCTTCAAACACCATAGAATCTATTAAATATATAAATCTTCAGCTGAATACACGTTCCCTCATCTCACGAATTGGAATAGGTCTCTATTTTATCCCTGTTAACAAGCGATAAGTTATGGTGTTGGAAATGCATGTCCAGAAGACTCAGGTTGGGTTAACTATAGTTCCTTTTCTCACGGAAGCCTCAATGGTTTTATCAGCACAAGAATATACTTTGTCAAAAATCCTGGTGTTGATGGACCAGTCCTGTGTTTTTTTACATGTACATCCCTGTTAGTGACGGGTAACATAGTTTCTCTTTTACATTCTTGCTCTGCAAGGTTCTCCAACAGTATCTGTTGGAACTTCTTTGATATGGCATAGAAGCATGGAGTTCTGATCAATTATTCAGTTGGATTTGCTGGATAATTTAGGTATTGGTTATCGTAATCATGCCCTGAGCAATTGAATATATCTGGCAGATCGTCTGTTTCCCTTGGATAATATGCTCAAGTTGGCTCACTGTAACAGGACCATTAATTGCCTTGTTAAGTGGGCCACTTTGGGATTTTGGGGGATGGCGGAGCAAAAACTACCTGTGAAGTAGATGATATATTTCTGTTGTCAGTATACCTATCTTTGCTTTCCACTGTTTTTCCGAATAACCGCATTGCACTAATATCATGACAAGCAAAAGTTGCAAATGTCTATATCACACCGTTGTCTGATGTCTCTTTTAAGACTTTGATGATACCATTTTTCTTTTCTTACAGGACATCCATGGATTTTGTTTTACACTGCACCCACATTGAAGAATCATGCAAAG</genome_strand>
        <mrna_strand>TTTGGGTCTGTTTTATTATGTCAGAGAAAGTTGAGTGGAGAAAAACATGCTTGTAAGACTTTGCTTAAGGGGGAAGAGATCATTCACCGTGAAGTTGAGATTATGCAGCATCTCTCTGGGCATCCAGGTGTTGTGACACTGAAGGCTGTGTATGAGGATGCTGAATCTTTTTATCTTGTCATGGAACTTTGCTCAGGAGGAAGGTTGCTTGACCAAATGGCTAGGGTTGGGCGATACCCTGAGCAACAAGCTGCTAATGTGATCAAAGAGCTCATGCTGGTTATCAGATACTGCCATGAGATGGGTGTTGTGCACAGGGACATAAAGCCTGAAAATGTCCTCCTTACAACCTCTGGACAAGTTAAGGTTTCAGACTTTGGGCTAGCTGTGAGAATTTCACATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGCTTGACTGGAGTAGTTGGAAGTCCAGCTTATGTTGCTCCTGAGGTTCTGCTAGGTGATTACACAGAGAAAGTGGACATATGGAGTGTAGGTGTCCTCCTACATGCACTTTTGGTGGGCTTGCTCCCATTTCAAGGTGATTCTTTGGAATCTATATTCAGTGCAATTAAGGAGGAGAACCTTGATTTCAGTGGTGGAGCTTGGGCATCTGTATCACAACCAGCTCGTGATCTGCTTTCTTGCATGATGACAAGGGATGTCTCAGCAAGGTACAGTGCTGACGAAGTACTAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCCATGGATTTTGTTTTACACTGCACCCACATTGAAGAATCATGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327366" ref_strand="+" ref_description="SGN-E327366 [cTOC-19-E11]">
      <seq>ttgggtctgttttattatgtcagagaaagttgagtggagaaaaacatgcttgtaagactttgcttaagggggaagagatcattcaccgtgaagttgagattatgcagcatctctctgggcatccaggtgttgtgacactgaaggctgtgtatgaggatgctgaatctttttatcttgtcatggaactttgctcaggaggaaggttgcttgaccaaatggctagggttgggcgataccctgagcaacaagctgctaatgtgatcaaagagctcatgctggttatcagatactgccatgagatgggtgttgtgcacagggacataaagcctgaaaatgtcctccttacaacctctggacaagttaaggtttcagactttgggctagctgtgagaatttcacatggtcagagcttgactggagtagttggaagtccagcttatgttgctcctgaggttctgctaggtgattacacagagaaagtggacatatggagtgtaggtgtcctcctacatgcacttttggtgggcttgctcccatttcaaggtgattctttggaatctatattcagtgcaattaaggaggagaaccttgatttcagtggtggagcttgggcatctgtatcacaaccagctcgtgatctgctttcttgcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="24318" stop="26574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24618" g_stop="25019" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25020" i_stop="26021" i_length="1002">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26022" g_stop="26274" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="655" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E327366" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24618" e_stop="25019"/>
          <exon e_start="26022" e_stop="26274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTCTGTTTTATTATGTCAGAGAAAGTTGAGTGGAGAAAAACATGCTTGTAAGACTTTGCTTAAGGGGGAAGAGATCATTCACCGTGAAGTTGAGATTATGCAGCATCTCTCTGGGCATCCAGGTGTTGTGACACTGAAGGCTGTGTATGAGGATGCTGAATCTTTTTATCTTGTCATGGAACTTTGCTCAGGAGGAAGGTTGCTTGACCAAATGGCTAGGGTTGGGCGATACCCTGAGCAACAAGCTGCTAATGTGATCAAAGAGCTCATGCTGGTTATCAGATACTGCCATGAGATGGGTGTTGTGCACAGGGACATAAAGCCTGAAAATGTCCTCCTTACAACCTCTGGACAAGTTAAGGTTTCAGACTTTGGGCTAGCTGTGAGAATTTCACATGGTAATTCAAGATGACCTCCTCTATTTGAATTTGACTTGTCGGTATTGTTCATATTATCCTATTTAGTGTGCATGAACCGGATACCACACCCTATATTATGATGCCTACCTGTTGTTGTCTGACTAGCTGTTTTTAGTCTTAGGCTGAAATTGTTATTTGTGCTCCTCAAGTGCGGTGCTTCTTGATCTGCATTACTCCTTGCACCCAAGAAAGATGACCTTATATGCGGATTCAGAAACATCTTTGTTTGATTGCCTTCATATACAATTATTTCCTTTTATTTTGCAATTAAATATGCTCTTCAGAAAACTGGAATCACTTGTCCACATATTTTCCAAGTTTCTTAACTTTTATTTGCAGAAATAGATTGGAACATTTCATACTTTACTCGAAACTTGATGGGAATGAAATGTTGTAGAAAGTGCATTATACCCACCTTCAATCTATCCTAATGTGCATTCAAATATGTCTTTTTCCAGTATACTCCTTGTATGTGCGGTTATTCCTTTTTTGCTAGAAGTTGACTTTACCTTTTAAAAAAATGTGCTAATTCATGATAAATTCATATGTATCTTCACTTTTTGCACCATTTCCAATTAGATTCAATCAAAGGACTTCTGAATTTTGTAAAAACTGACAGTTCTTATCTTAAACCCTTGATTTTTATCCCTACCCTTGCTTTGTCATTTTACTGAGTGTAGTTTGGGAGGTGTTTACCTCAGATTATGCACATGAAAGACTAGAAACATTTTGGAATTTAATGCAATGTTGGATGATGGTTCTTTACATGCTGGTCTCAACTCTTTGTATCCAGGATGTTAGCTATGTTCATGTTGTCTCTTATGAGCGCATCATTAAATTTCTATTTTGAGTCATTCTAGTTCTTCTTGGAGGATCCATTGCACTAAACTGGGTGAAGCGGTTTTGTGTTTGTGTGTGTGTGTTTTTCTTTTGTACGTTAATGATGTATACGAAATGCTCCATTCTTTGATGTGCTCGTAGGTCAGAGCTTGACTGGAGTAGTTGGAAGTCCAGCTTATGTTGCTCCTGAGGTTCTGCTAGGTGATTACACAGAGAAAGTGGACATATGGAGTGTAGGTGTCCTCCTACATGCACTTTTGGTGGGCTTGCTCCCATTTCAAGGTGATTCTTTGGAATCTATATTCAGTGCAATTAAGGAGGAGAACCTTGATTTCAGTGGTGGAGCTTGGGCATCTGTATCACAACCAGCTCGTGATCTGCTTTCTTGCATGAT</genome_strand>
        <mrna_strand>TTGGGTCTGTTTTATTATGTCAGAGAAAGTTGAGTGGAGAAAAACATGCTTGTAAGACTTTGCTTAAGGGGGAAGAGATCATTCACCGTGAAGTTGAGATTATGCAGCATCTCTCTGGGCATCCAGGTGTTGTGACACTGAAGGCTGTGTATGAGGATGCTGAATCTTTTTATCTTGTCATGGAACTTTGCTCAGGAGGAAGGTTGCTTGACCAAATGGCTAGGGTTGGGCGATACCCTGAGCAACAAGCTGCTAATGTGATCAAAGAGCTCATGCTGGTTATCAGATACTGCCATGAGATGGGTGTTGTGCACAGGGACATAAAGCCTGAAAATGTCCTCCTTACAACCTCTGGACAAGTTAAGGTTTCAGACTTTGGGCTAGCTGTGAGAATTTCACATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGCTTGACTGGAGTAGTTGGAAGTCCAGCTTATGTTGCTCCTGAGGTTCTGCTAGGTGATTACACAGAGAAAGTGGACATATGGAGTGTAGGTGTCCTCCTACATGCACTTTTGGTGGGCTTGCTCCCATTTCAAGGTGATTCTTTGGAATCTATATTCAGTGCAATTAAGGAGGAGAACCTTGATTTCAGTGGTGGAGCTTGGGCATCTGTATCACAACCAGCTCGTGATCTGCTTTCTTGCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316432" ref_strand="+" ref_description="SGN-E316432 [cTOA-25-P21]">
      <seq>cagcatctctctgggcatccaggtgttgtgacactgaaggctgtgtatgaggatgctgaatctttttatcttgtcatggaactttgctcaggaggaaggttgcttgaccaaatggctagggttgggcgataccctgagcaacaagctgctaatgtgatcaaagagctcatgctggttatcagatactgccatgagatgggtgttgtgcacagggacataaagcctgaaaatgtcctccttacaacctctggacaagttaaggtttcagactttgggctagctgtgagaatttcacatggtcagagcttgactggagtagttggaagtccagcttatgttgctcctgaggttctgctaggtgattacacagagaaagtggacatatggagtgtaggtgtcctcctacatgcacttttggtgggcttgctcccatttcaaggtgattctttggaatctatattcagtgcaattaaggaggagaaccttgatttcagtggtggagcttgggcatctgtatcacaaccagctcgtgatctgctttcttgcatgatgacnanggatgtctcagcaaggtacagtgctgacgaagtacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="24422" stop="26617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24722" g_stop="25019" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25020" i_stop="26021" i_length="1002">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26022" g_stop="26317" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="594" r_length="296" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E316432" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24722" e_stop="25019"/>
          <exon e_start="26022" e_stop="26317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATCTCTCTGGGCATCCAGGTGTTGTGACACTGAAGGCTGTGTATGAGGATGCTGAATCTTTTTATCTTGTCATGGAACTTTGCTCAGGAGGAAGGTTGCTTGACCAAATGGCTAGGGTTGGGCGATACCCTGAGCAACAAGCTGCTAATGTGATCAAAGAGCTCATGCTGGTTATCAGATACTGCCATGAGATGGGTGTTGTGCACAGGGACATAAAGCCTGAAAATGTCCTCCTTACAACCTCTGGACAAGTTAAGGTTTCAGACTTTGGGCTAGCTGTGAGAATTTCACATGGTAATTCAAGATGACCTCCTCTATTTGAATTTGACTTGTCGGTATTGTTCATATTATCCTATTTAGTGTGCATGAACCGGATACCACACCCTATATTATGATGCCTACCTGTTGTTGTCTGACTAGCTGTTTTTAGTCTTAGGCTGAAATTGTTATTTGTGCTCCTCAAGTGCGGTGCTTCTTGATCTGCATTACTCCTTGCACCCAAGAAAGATGACCTTATATGCGGATTCAGAAACATCTTTGTTTGATTGCCTTCATATACAATTATTTCCTTTTATTTTGCAATTAAATATGCTCTTCAGAAAACTGGAATCACTTGTCCACATATTTTCCAAGTTTCTTAACTTTTATTTGCAGAAATAGATTGGAACATTTCATACTTTACTCGAAACTTGATGGGAATGAAATGTTGTAGAAAGTGCATTATACCCACCTTCAATCTATCCTAATGTGCATTCAAATATGTCTTTTTCCAGTATACTCCTTGTATGTGCGGTTATTCCTTTTTTGCTAGAAGTTGACTTTACCTTTTAAAAAAATGTGCTAATTCATGATAAATTCATATGTATCTTCACTTTTTGCACCATTTCCAATTAGATTCAATCAAAGGACTTCTGAATTTTGTAAAAACTGACAGTTCTTATCTTAAACCCTTGATTTTTATCCCTACCCTTGCTTTGTCATTTTACTGAGTGTAGTTTGGGAGGTGTTTACCTCAGATTATGCACATGAAAGACTAGAAACATTTTGGAATTTAATGCAATGTTGGATGATGGTTCTTTACATGCTGGTCTCAACTCTTTGTATCCAGGATGTTAGCTATGTTCATGTTGTCTCTTATGAGCGCATCATTAAATTTCTATTTTGAGTCATTCTAGTTCTTCTTGGAGGATCCATTGCACTAAACTGGGTGAAGCGGTTTTGTGTTTGTGTGTGTGTGTTTTTCTTTTGTACGTTAATGATGTATACGAAATGCTCCATTCTTTGATGTGCTCGTAGGTCAGAGCTTGACTGGAGTAGTTGGAAGTCCAGCTTATGTTGCTCCTGAGGTTCTGCTAGGTGATTACACAGAGAAAGTGGACATATGGAGTGTAGGTGTCCTCCTACATGCACTTTTGGTGGGCTTGCTCCCATTTCAAGGTGATTCTTTGGAATCTATATTCAGTGCAATTAAGGAGGAGAACCTTGATTTCAGTGGTGGAGCTTGGGCATCTGTATCACAACCAGCTCGTGATCTGCTTTCTTGCATGATGACAAGGGATGTCTCAGCAAGGTACAGTGCTGACGAAGTACTA</genome_strand>
        <mrna_strand>CAGCATCTCTCTGGGCATCCAGGTGTTGTGACACTGAAGGCTGTGTATGAGGATGCTGAATCTTTTTATCTTGTCATGGAACTTTGCTCAGGAGGAAGGTTGCTTGACCAAATGGCTAGGGTTGGGCGATACCCTGAGCAACAAGCTGCTAATGTGATCAAAGAGCTCATGCTGGTTATCAGATACTGCCATGAGATGGGTGTTGTGCACAGGGACATAAAGCCTGAAAATGTCCTCCTTACAACCTCTGGACAAGTTAAGGTTTCAGACTTTGGGCTAGCTGTGAGAATTTCACATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGCTTGACTGGAGTAGTTGGAAGTCCAGCTTATGTTGCTCCTGAGGTTCTGCTAGGTGATTACACAGAGAAAGTGGACATATGGAGTGTAGGTGTCCTCCTACATGCACTTTTGGTGGGCTTGCTCCCATTTCAAGGTGATTCTTTGGAATCTATATTCAGTGCAATTAAGGAGGAGAACCTTGATTTCAGTGGTGGAGCTTGGGCATCTGTATCACAACCAGCTCGTGATCTGCTTTCTTGCATGATGACNANGGATGTCTCAGCAAGGTACAGTGCTGACGAAGTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553016" ref_strand="+" ref_description="SGN-E553016 [cTSB-5-M12]">
      <seq>cccgggctgcaggattcggcacgagggttgcttgaccaaatggctagggttgggcgataccctgagcaacaagctgctaatgtgatcaaagagctcatgctggttatcagatactgccatgagatgggtgttgtgcacagggacataaagcctgaaaatgtcctccttacaacctctggacaagttaaggtttcagactttgggctagctgtgagaatttcacatggtcagagcttgactggagtagttggaagtccagcttatgttgctcctgaggttctgctaggtgattacacagagaaagtggacatatggagtgtaggtgtcctcctacatgcacttttggtgggcttgctcccatttcaaggtgattctttggaatctatattcagtgcaattaaggaggagaaccttgatttcagtggtggagcttgggcatctgtatcacaaccagctcgtgatctgctttcttgcatgatgacaagggatgtctcagcaaggtacagtgctgacgaagtactaagacatccatggattttgttttacactgcacccacattgaagaatcatgcaaagccaattagaagccagctaactgctactactaggatagagcgagagagaagaaacttagccttcagctctctcagtgatgactttggttcaacttttacatctggtagttcgtctaagatgcctgaaggtgaagactctggttttatcgatgctctcacggttgctgtttcacacatgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="24509" stop="27896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24813" g_stop="25019" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="226" r_length="207" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25020" i_stop="26021" i_length="1002">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26022" g_stop="26318" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="523" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26319" i_stop="27362" i_length="1044">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27363" g_stop="27596" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="757" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E553016" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24813" e_stop="25019"/>
          <exon e_start="26022" e_stop="26318"/>
          <exon e_start="27363" e_stop="27596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAGGTTGCTTGACCAAATGGCTAGGGTTGGGCGATACCCTGAGCAACAAGCTGCTAATGTGATCAAAGAGCTCATGCTGGTTATCAGATACTGCCATGAGATGGGTGTTGTGCACAGGGACATAAAGCCTGAAAATGTCCTCCTTACAACCTCTGGACAAGTTAAGGTTTCAGACTTTGGGCTAGCTGTGAGAATTTCACATGGTAATTCAAGATGACCTCCTCTATTTGAATTTGACTTGTCGGTATTGTTCATATTATCCTATTTAGTGTGCATGAACCGGATACCACACCCTATATTATGATGCCTACCTGTTGTTGTCTGACTAGCTGTTTTTAGTCTTAGGCTGAAATTGTTATTTGTGCTCCTCAAGTGCGGTGCTTCTTGATCTGCATTACTCCTTGCACCCAAGAAAGATGACCTTATATGCGGATTCAGAAACATCTTTGTTTGATTGCCTTCATATACAATTATTTCCTTTTATTTTGCAATTAAATATGCTCTTCAGAAAACTGGAATCACTTGTCCACATATTTTCCAAGTTTCTTAACTTTTATTTGCAGAAATAGATTGGAACATTTCATACTTTACTCGAAACTTGATGGGAATGAAATGTTGTAGAAAGTGCATTATACCCACCTTCAATCTATCCTAATGTGCATTCAAATATGTCTTTTTCCAGTATACTCCTTGTATGTGCGGTTATTCCTTTTTTGCTAGAAGTTGACTTTACCTTTTAAAAAAATGTGCTAATTCATGATAAATTCATATGTATCTTCACTTTTTGCACCATTTCCAATTAGATTCAATCAAAGGACTTCTGAATTTTGTAAAAACTGACAGTTCTTATCTTAAACCCTTGATTTTTATCCCTACCCTTGCTTTGTCATTTTACTGAGTGTAGTTTGGGAGGTGTTTACCTCAGATTATGCACATGAAAGACTAGAAACATTTTGGAATTTAATGCAATGTTGGATGATGGTTCTTTACATGCTGGTCTCAACTCTTTGTATCCAGGATGTTAGCTATGTTCATGTTGTCTCTTATGAGCGCATCATTAAATTTCTATTTTGAGTCATTCTAGTTCTTCTTGGAGGATCCATTGCACTAAACTGGGTGAAGCGGTTTTGTGTTTGTGTGTGTGTGTTTTTCTTTTGTACGTTAATGATGTATACGAAATGCTCCATTCTTTGATGTGCTCGTAGGTCAGAGCTTGACTGGAGTAGTTGGAAGTCCAGCTTATGTTGCTCCTGAGGTTCTGCTAGGTGATTACACAGAGAAAGTGGACATATGGAGTGTAGGTGTCCTCCTACATGCACTTTTGGTGGGCTTGCTCCCATTTCAAGGTGATTCTTTGGAATCTATATTCAGTGCAATTAAGGAGGAGAACCTTGATTTCAGTGGTGGAGCTTGGGCATCTGTATCACAACCAGCTCGTGATCTGCTTTCTTGCATGATGACAAGGGATGTCTCAGCAAGGTACAGTGCTGACGAAGTACTAAGTGAGTAGCCTTTCAGATCTCTTCTATTGTCAACTTACACCTTATATTCTTTTATCATTTTTTTAAATTGAAATGTAATCATCAAAGAGAACTAGGACTGGATGAAGTGCTTTGGTTCTACCTCTGGAGCATTATTTAGCAGCATCTGTGAGCCTTACAAGTAGAAAGGGAAATGTGACTGATTATTCGTCTGCTCTGTGAAATGACAATGCTGGTTTTTCTTTTAAGCAGGTCTATGCCTATGCCACATCCCACCTTGGGGTGCGCGGAGGGTGATAGATTTGTGCTTAATCGCTTCAAACACCATAGAATCTATTAAATATATAAATCTTCAGCTGAATACACGTTCCCTCATCTCACGAATTGGAATAGGTCTCTATTTTATCCCTGTTAACAAGCGATAAGTTATGGTGTTGGAAATGCATGTCCAGAAGACTCAGGTTGGGTTAACTATAGTTCCTTTTCTCACGGAAGCCTCAATGGTTTTATCAGCACAAGAATATACTTTGTCAAAAATCCTGGTGTTGATGGACCAGTCCTGTGTTTTTTTACATGTACATCCCTGTTAGTGACGGGTAACATAGTTTCTCTTTTACATTCTTGCTCTGCAAGGTTCTCCAACAGTATCTGTTGGAACTTCTTTGATATGGCATAGAAGCATGGAGTTCTGATCAATTATTCAGTTGGATTTGCTGGATAATTTAGGTATTGGTTATCGTAATCATGCCCTGAGCAATTGAATATATCTGGCAGATCGTCTGTTTCCCTTGGATAATATGCTCAAGTTGGCTCACTGTAACAGGACCATTAATTGCCTTGTTAAGTGGGCCACTTTGGGATTTTGGGGGATGGCGGAGCAAAAACTACCTGTGAAGTAGATGATATATTTCTGTTGTCAGTATACCTATCTTTGCTTTCCACTGTTTTTCCGAATAACCGCATTGCACTAATATCATGACAAGCAAAAGTTGCAAATGTCTATATCACACCGTTGTCTGATGTCTCTTTTAAGACTTTGATGATACCATTTTTCTTTTCTTACAGGACATCCATGGATTTTGTTTTACACTGCACCCACATTGAAGAATCATGCAAAGCCAATTAGAAGCCAGCTAACTGCTACTACTAGGATAGAGCGAGAGAGAAGAAACTTAGCCTTCAGCTCTCTCAGTGATGACTTTGGTTCAACTTTTACATCTGGTAGTTCGTCTAAGATGCCTGAAGGTGAAGACTCTGGTTTTATCGATGCTCTCACGGTTGCTGTTTCACACATGAAGA</genome_strand>
        <mrna_strand>CACGAGGGTTGCTTGACCAAATGGCTAGGGTTGGGCGATACCCTGAGCAACAAGCTGCTAATGTGATCAAAGAGCTCATGCTGGTTATCAGATACTGCCATGAGATGGGTGTTGTGCACAGGGACATAAAGCCTGAAAATGTCCTCCTTACAACCTCTGGACAAGTTAAGGTTTCAGACTTTGGGCTAGCTGTGAGAATTTCACATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGCTTGACTGGAGTAGTTGGAAGTCCAGCTTATGTTGCTCCTGAGGTTCTGCTAGGTGATTACACAGAGAAAGTGGACATATGGAGTGTAGGTGTCCTCCTACATGCACTTTTGGTGGGCTTGCTCCCATTTCAAGGTGATTCTTTGGAATCTATATTCAGTGCAATTAAGGAGGAGAACCTTGATTTCAGTGGTGGAGCTTGGGCATCTGTATCACAACCAGCTCGTGATCTGCTTTCTTGCATGATGACAAGGGATGTCTCAGCAAGGTACAGTGCTGACGAAGTACTAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCCATGGATTTTGTTTTACACTGCACCCACATTGAAGAATCATGCAAAGCCAATTAGAAGCCAGCTAACTGCTACTACTAGGATAGAGCGAGAGAGAAGAAACTTAGCCTTCAGCTCTCTCAGTGATGACTTTGGTTCAACTTTTACATCTGGTAGTTCGTCTAAGATGCCTGAAGGTGAAGACTCTGGTTTTATCGATGCTCTCACGGTTGCTGTTTCACACATGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552340" ref_strand="+" ref_description="SGN-E552340 [cTSB-3-J24]">
      <seq>gttgcttgaccaaatggctagggttgggcgataccctgagcaacaagctgctaatgtgatcaaagagctcatgctggttatcagatactgccatgagatgggtgttgtgcacagggacataaagcctgaaaatgtcctccttacaacctctggacaagttaaggtttcagactttgggctagctgtgagaatttcacatggtcagagcttgactggagtagttggaagtccagcttatgttgctcctgaggttctgctaggtgattacacagagaaagtggacatatggagtgtaggtgtcctcctacatgcacttttggtgggcttgctcccatttcaaggtgattctttggaatctatattcagtgcaattaaggaggagaaccttgatttcagtggtggagcttgggcatctgtatcacaaccagctcgtgatctgctttcttgcatgatgacaagggatgtctcagcaaggtacagtgctgacgaagtactaagacatccatggattttgttttacactgcacccacattgaagaatcatgcaaagccaattagaagccagctaactgctactactaggatagagcgagagagaagaaacttagccttcagctctctcagtgatgactttggttcaacttttacatctggtagttcgtctaagatgcctgaaggtgaagactctggttttatcgatgctctcacggttgctgtttcacacatgaagatatcagagccaaagaaaaacagaatatgcagcccagccagaacaatcgatcaagaatgttctcctaacatacaaactaaccacctctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="24520" stop="27985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24820" g_stop="25019" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25020" i_stop="26021" i_length="1002">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26022" g_stop="26318" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="497" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26319" i_stop="27362" i_length="1044">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27363" g_stop="27685" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="820" r_length="323" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E552340" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24820" e_stop="25019"/>
          <exon e_start="26022" e_stop="26318"/>
          <exon e_start="27363" e_stop="27685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTTGACCAAATGGCTAGGGTTGGGCGATACCCTGAGCAACAAGCTGCTAATGTGATCAAAGAGCTCATGCTGGTTATCAGATACTGCCATGAGATGGGTGTTGTGCACAGGGACATAAAGCCTGAAAATGTCCTCCTTACAACCTCTGGACAAGTTAAGGTTTCAGACTTTGGGCTAGCTGTGAGAATTTCACATGGTAATTCAAGATGACCTCCTCTATTTGAATTTGACTTGTCGGTATTGTTCATATTATCCTATTTAGTGTGCATGAACCGGATACCACACCCTATATTATGATGCCTACCTGTTGTTGTCTGACTAGCTGTTTTTAGTCTTAGGCTGAAATTGTTATTTGTGCTCCTCAAGTGCGGTGCTTCTTGATCTGCATTACTCCTTGCACCCAAGAAAGATGACCTTATATGCGGATTCAGAAACATCTTTGTTTGATTGCCTTCATATACAATTATTTCCTTTTATTTTGCAATTAAATATGCTCTTCAGAAAACTGGAATCACTTGTCCACATATTTTCCAAGTTTCTTAACTTTTATTTGCAGAAATAGATTGGAACATTTCATACTTTACTCGAAACTTGATGGGAATGAAATGTTGTAGAAAGTGCATTATACCCACCTTCAATCTATCCTAATGTGCATTCAAATATGTCTTTTTCCAGTATACTCCTTGTATGTGCGGTTATTCCTTTTTTGCTAGAAGTTGACTTTACCTTTTAAAAAAATGTGCTAATTCATGATAAATTCATATGTATCTTCACTTTTTGCACCATTTCCAATTAGATTCAATCAAAGGACTTCTGAATTTTGTAAAAACTGACAGTTCTTATCTTAAACCCTTGATTTTTATCCCTACCCTTGCTTTGTCATTTTACTGAGTGTAGTTTGGGAGGTGTTTACCTCAGATTATGCACATGAAAGACTAGAAACATTTTGGAATTTAATGCAATGTTGGATGATGGTTCTTTACATGCTGGTCTCAACTCTTTGTATCCAGGATGTTAGCTATGTTCATGTTGTCTCTTATGAGCGCATCATTAAATTTCTATTTTGAGTCATTCTAGTTCTTCTTGGAGGATCCATTGCACTAAACTGGGTGAAGCGGTTTTGTGTTTGTGTGTGTGTGTTTTTCTTTTGTACGTTAATGATGTATACGAAATGCTCCATTCTTTGATGTGCTCGTAGGTCAGAGCTTGACTGGAGTAGTTGGAAGTCCAGCTTATGTTGCTCCTGAGGTTCTGCTAGGTGATTACACAGAGAAAGTGGACATATGGAGTGTAGGTGTCCTCCTACATGCACTTTTGGTGGGCTTGCTCCCATTTCAAGGTGATTCTTTGGAATCTATATTCAGTGCAATTAAGGAGGAGAACCTTGATTTCAGTGGTGGAGCTTGGGCATCTGTATCACAACCAGCTCGTGATCTGCTTTCTTGCATGATGACAAGGGATGTCTCAGCAAGGTACAGTGCTGACGAAGTACTAAGTGAGTAGCCTTTCAGATCTCTTCTATTGTCAACTTACACCTTATATTCTTTTATCATTTTTTTAAATTGAAATGTAATCATCAAAGAGAACTAGGACTGGATGAAGTGCTTTGGTTCTACCTCTGGAGCATTATTTAGCAGCATCTGTGAGCCTTACAAGTAGAAAGGGAAATGTGACTGATTATTCGTCTGCTCTGTGAAATGACAATGCTGGTTTTTCTTTTAAGCAGGTCTATGCCTATGCCACATCCCACCTTGGGGTGCGCGGAGGGTGATAGATTTGTGCTTAATCGCTTCAAACACCATAGAATCTATTAAATATATAAATCTTCAGCTGAATACACGTTCCCTCATCTCACGAATTGGAATAGGTCTCTATTTTATCCCTGTTAACAAGCGATAAGTTATGGTGTTGGAAATGCATGTCCAGAAGACTCAGGTTGGGTTAACTATAGTTCCTTTTCTCACGGAAGCCTCAATGGTTTTATCAGCACAAGAATATACTTTGTCAAAAATCCTGGTGTTGATGGACCAGTCCTGTGTTTTTTTACATGTACATCCCTGTTAGTGACGGGTAACATAGTTTCTCTTTTACATTCTTGCTCTGCAAGGTTCTCCAACAGTATCTGTTGGAACTTCTTTGATATGGCATAGAAGCATGGAGTTCTGATCAATTATTCAGTTGGATTTGCTGGATAATTTAGGTATTGGTTATCGTAATCATGCCCTGAGCAATTGAATATATCTGGCAGATCGTCTGTTTCCCTTGGATAATATGCTCAAGTTGGCTCACTGTAACAGGACCATTAATTGCCTTGTTAAGTGGGCCACTTTGGGATTTTGGGGGATGGCGGAGCAAAAACTACCTGTGAAGTAGATGATATATTTCTGTTGTCAGTATACCTATCTTTGCTTTCCACTGTTTTTCCGAATAACCGCATTGCACTAATATCATGACAAGCAAAAGTTGCAAATGTCTATATCACACCGTTGTCTGATGTCTCTTTTAAGACTTTGATGATACCATTTTTCTTTTCTTACAGGACATCCATGGATTTTGTTTTACACTGCACCCACATTGAAGAATCATGCAAAGCCAATTAGAAGCCAGCTAACTGCTACTACTAGGATAGAGCGAGAGAGAAGAAACTTAGCCTTCAGCTCTCTCAGTGATGACTTTGGTTCAACTTTTACATCTGGTAGTTCGTCTAAGATGCCTGAAGGTGAAGACTCTGGTTTTATCGATGCTCTCACGGTTGCTGTTTCACACATGAAGATATCAGAGCCAAAGAGAAGCAGAATATGCAGCCCAGCCAGAACAATCGATCAAGAATGTTCTCCTAACATACAAGCTAACCACCTCTGT</genome_strand>
        <mrna_strand>GTTGCTTGACCAAATGGCTAGGGTTGGGCGATACCCTGAGCAACAAGCTGCTAATGTGATCAAAGAGCTCATGCTGGTTATCAGATACTGCCATGAGATGGGTGTTGTGCACAGGGACATAAAGCCTGAAAATGTCCTCCTTACAACCTCTGGACAAGTTAAGGTTTCAGACTTTGGGCTAGCTGTGAGAATTTCACATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGCTTGACTGGAGTAGTTGGAAGTCCAGCTTATGTTGCTCCTGAGGTTCTGCTAGGTGATTACACAGAGAAAGTGGACATATGGAGTGTAGGTGTCCTCCTACATGCACTTTTGGTGGGCTTGCTCCCATTTCAAGGTGATTCTTTGGAATCTATATTCAGTGCAATTAAGGAGGAGAACCTTGATTTCAGTGGTGGAGCTTGGGCATCTGTATCACAACCAGCTCGTGATCTGCTTTCTTGCATGATGACAAGGGATGTCTCAGCAAGGTACAGTGCTGACGAAGTACTAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCCATGGATTTTGTTTTACACTGCACCCACATTGAAGAATCATGCAAAGCCAATTAGAAGCCAGCTAACTGCTACTACTAGGATAGAGCGAGAGAGAAGAAACTTAGCCTTCAGCTCTCTCAGTGATGACTTTGGTTCAACTTTTACATCTGGTAGTTCGTCTAAGATGCCTGAAGGTGAAGACTCTGGTTTTATCGATGCTCTCACGGTTGCTGTTTCACACATGAAGATATCAGAGCCAAAGAAAAACAGAATATGCAGCCCAGCCAGAACAATCGATCAAGAATGTTCTCCTAACATACAAACTAACCACCTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E230470" ref_strand="+" ref_description="SGN-E230470 [cLEL-35-H2](-)">
      <seq>ggcacgagaaacaaacctgtcagatcatactcgactagtttggagttgcttctgtcatgtgaattcataacatgtctaacttataagttagaatgtgtgtgtgtgattatgtaaataaggcgtgttttctgactcatttctattgggacgttgtaagaaaatcttcaatggtgataagatataatgcatttgtaatccaaaaaaaaaaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="27543" stop="89304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27836" g_stop="28051" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E230470" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>216</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27836" e_stop="28051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTAATAAACAAACCTGTCAGATCATACTCGACTAGTTTGGAGTTGCTTCTGTCATGTGAATTCATAACATGTCTAACTTATAAGTTAGAATGTGTGTGTGTGATTATGTAAATAAGGCGTGTTTTCTGACTCATTTCTATTGGGACGTTGTAAGAAAATCTTCAATGGTGATAAGATATAATGCATTTGTAATCCATCTTGTTCAAGATTGG</genome_strand>
        <mrna_strand>GGCA-CGAGAAACAAACCTGTCAGATCATACTCGACTAGTTTGGAGTTGCTTCTGTCATGTGAATTCATAACATGTCTAACTTATAAGTTAGAATGTGTGTGTGTGATTATGTAAATAAGGCGTGTTTTCTGACTCATTTCTATTGGGACGTTGTAAGAAAATCTTCAATGGTGATAAGATATAATGCATTTGTAATCCAAAAAAAAAAAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550394" ref_strand="+" ref_description="SGN-E550394 [TUS-5-I13]">
      <seq>ttggagagggggtctccatatgataatagcaggatcaggagaagaaataccaactgtccaggccaaagatcaaaggatgattgttgaaagcctaattagcatactcccacaacagaaggacagtgtttcatgtagcttccttcttcgactattgaggatggcaaacatgcttaaagtggctccagctttgataacagaactggagaaacgcgtaggcatgcaatttgagcaggctacattggctgatctcctcataccatcttaccataaaagtgaaaccatgtatgacattgatctcgtccagaggcttttggaacatttcataattcaagagcagacagaaagttcaagtcctagtagatatccattccacgataaacatatgcaggatggaagtcaaaggggtacaaatctaaatgccaagatgagggtggcaaggctcgttgacagttacttaacagaagtatctagagatagaaatctttccttgacaaagtttcaggtcttggcagaggctttgccagattcagcaagaacatgtgatgatggactttatcgagcaattgattcctatcttaaggcccatccaacactctcagaacatgaaagaaagaggctttgcagggtgatggattgccagaaactctctgttgatgcttgcatgcacgctgctcagaatgaaaggctcccactacgagtggtggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="31223" stop="32881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31523" g_stop="32102" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32103" i_stop="32454" i_length="352">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32455" g_stop="32581" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="707" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E550394" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31523" e_stop="32102"/>
          <exon e_start="32455" e_stop="32581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGAGGGGGTCTCCATATGATAATAGCAGGATCAGGAGAAGAAATACCAACTGTCCAGGCCAAAGATCAAAGGATGATTGTTGAAAGCCTAATTAGCATACTCCCACAACAGAAGGACAGTGTTTCATGTAGCTTCCTTCTTCGACTATTGAGGATGGCAAACATGCTTAAAGTGGCTCCAGCTTTGATAACAGAACTGGAGAAACGCGTAGGCATGCAATTTGAGCAGGCTACATTGGCTGATCTCCTCATACCATCTTACCATAAAAGTGAAACCATGTATGACATTGATCTCGTCCAGAGGCTTTTGGAACATTTCATAATTCAAGAGCAGACAGAAAGTTCAAGTCCTAGTAGATATCCATTCCACGATAAACATATGCAGGATGGAAGTCAAAGGGGTACAAATCTAAATGCCAAGATGAGGGTGGCAAGGCTCGTTGACAGTTACTTAACAGAAGTATCTAGAGATAGAAATCTTTCCTTGACAAAGTTTCAGGTCTTGGCAGAGGCTTTGCCAGATTCAGCAAGAACATGTGATGATGGACTTTATCGAGCAATTGATTCCTATCTTAAGGTATTTTAATCCAATCCTGTCAATTTATTGTTGGGTGCATCCTTAATTGATATCCTTAAAGCCATTGCTGTTGAGCTTGTAGTTTGATTTATCATGAATGTAGTTTGCCTTTCTGTTCTGAACTCTCAATGTTCCAATATTAGCCTGCTTACATATCTTAATAGTAAACTTACAGTTATAACAAGTGGCATGGTTAAGAATTCTAGAATGTTGTATATGCTAAAGATCAAATTGATCACATAGAAGTAAATCGTCTGTAAATATTGAAATTATGCTGTCTGCATCATAGAATTCTAGCCCAACATGCTTATTTTTTTAACAGAAACTCACTCACTGATATACAACATAACAGGCCCATCCAACACTCTCAGAACATGAAAGAAAGAGGCTTTGCAGGGTGATGGATTGCCAGAAACTCTCTGTTGATGCTTGCATGCACGCTGCTCAGAATGAAAGGCTCCCACTACGAGTGGTGGTGC</genome_strand>
        <mrna_strand>TTGGAGAGGGGGTCTCCATATGATAATAGCAGGATCAGGAGAAGAAATACCAACTGTCCAGGCCAAAGATCAAAGGATGATTGTTGAAAGCCTAATTAGCATACTCCCACAACAGAAGGACAGTGTTTCATGTAGCTTCCTTCTTCGACTATTGAGGATGGCAAACATGCTTAAAGTGGCTCCAGCTTTGATAACAGAACTGGAGAAACGCGTAGGCATGCAATTTGAGCAGGCTACATTGGCTGATCTCCTCATACCATCTTACCATAAAAGTGAAACCATGTATGACATTGATCTCGTCCAGAGGCTTTTGGAACATTTCATAATTCAAGAGCAGACAGAAAGTTCAAGTCCTAGTAGATATCCATTCCACGATAAACATATGCAGGATGGAAGTCAAAGGGGTACAAATCTAAATGCCAAGATGAGGGTGGCAAGGCTCGTTGACAGTTACTTAACAGAAGTATCTAGAGATAGAAATCTTTCCTTGACAAAGTTTCAGGTCTTGGCAGAGGCTTTGCCAGATTCAGCAAGAACATGTGATGATGGACTTTATCGAGCAATTGATTCCTATCTTAAG................................................................................................................................................................................................................................................................................................................................................................GCCCATCCAACACTCTCAGAACATGAAAGAAAGAGGCTTTGCAGGGTGATGGATTGCCAGAAACTCTCTGTTGATGCTTGCATGCACGCTGCTCAGAATGAAAGGCTCCCACTACGAGTGGTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E389842" ref_strand="+" ref_description="SGN-E389842 [TUS-4-I13]">
      <seq>ttggagagggggtctccatatgataatagcaggatcaggagaagaaataccaactgtccaggccaaagatcaaaggatgattgttgaaagcctaattagcatactcccacaacagaaggacagtgtttcatgtagcttccttcttcgactattgaggatggcaaacatgcttaaagtggctccagctttgataacagaactggagaaacgcgtaggcatgcaatttgagcaggctacattggctgatctcctcataccatcttaccataaaagtgaaaccatgtatgacattgatctcgtccagaggcttttggaacatttcataattcaagagcagacagaaagttcaagtcctagtagatatccattccacgataaacatatgcaggatggaagtcaaaggggtacaaatctaaatgccaagatgagggtggcaaggctcgttgacagttacttaacagaagtatctagagatagaaatctttccttgacaaagtttcaggtcttggcagaggctttgccagattcagcaagaacatgtgatgatggactttatcgagcaattgattcctatcttaaggcccatccaacactctcagaacatgaaagaaagaggctttgcagggtgatggattgccagaaactctctgttgatgcttgcatgcacgctgctcagaatgaaaggctcccacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="31223" stop="32868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31523" g_stop="32102" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32103" i_stop="32454" i_length="352">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32455" g_stop="32568" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="694" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E389842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31523" e_stop="32102"/>
          <exon e_start="32455" e_stop="32568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGAGGGGGTCTCCATATGATAATAGCAGGATCAGGAGAAGAAATACCAACTGTCCAGGCCAAAGATCAAAGGATGATTGTTGAAAGCCTAATTAGCATACTCCCACAACAGAAGGACAGTGTTTCATGTAGCTTCCTTCTTCGACTATTGAGGATGGCAAACATGCTTAAAGTGGCTCCAGCTTTGATAACAGAACTGGAGAAACGCGTAGGCATGCAATTTGAGCAGGCTACATTGGCTGATCTCCTCATACCATCTTACCATAAAAGTGAAACCATGTATGACATTGATCTCGTCCAGAGGCTTTTGGAACATTTCATAATTCAAGAGCAGACAGAAAGTTCAAGTCCTAGTAGATATCCATTCCACGATAAACATATGCAGGATGGAAGTCAAAGGGGTACAAATCTAAATGCCAAGATGAGGGTGGCAAGGCTCGTTGACAGTTACTTAACAGAAGTATCTAGAGATAGAAATCTTTCCTTGACAAAGTTTCAGGTCTTGGCAGAGGCTTTGCCAGATTCAGCAAGAACATGTGATGATGGACTTTATCGAGCAATTGATTCCTATCTTAAGGTATTTTAATCCAATCCTGTCAATTTATTGTTGGGTGCATCCTTAATTGATATCCTTAAAGCCATTGCTGTTGAGCTTGTAGTTTGATTTATCATGAATGTAGTTTGCCTTTCTGTTCTGAACTCTCAATGTTCCAATATTAGCCTGCTTACATATCTTAATAGTAAACTTACAGTTATAACAAGTGGCATGGTTAAGAATTCTAGAATGTTGTATATGCTAAAGATCAAATTGATCACATAGAAGTAAATCGTCTGTAAATATTGAAATTATGCTGTCTGCATCATAGAATTCTAGCCCAACATGCTTATTTTTTTAACAGAAACTCACTCACTGATATACAACATAACAGGCCCATCCAACACTCTCAGAACATGAAAGAAAGAGGCTTTGCAGGGTGATGGATTGCCAGAAACTCTCTGTTGATGCTTGCATGCACGCTGCTCAGAATGAAAGGCTCCCACTA</genome_strand>
        <mrna_strand>TTGGAGAGGGGGTCTCCATATGATAATAGCAGGATCAGGAGAAGAAATACCAACTGTCCAGGCCAAAGATCAAAGGATGATTGTTGAAAGCCTAATTAGCATACTCCCACAACAGAAGGACAGTGTTTCATGTAGCTTCCTTCTTCGACTATTGAGGATGGCAAACATGCTTAAAGTGGCTCCAGCTTTGATAACAGAACTGGAGAAACGCGTAGGCATGCAATTTGAGCAGGCTACATTGGCTGATCTCCTCATACCATCTTACCATAAAAGTGAAACCATGTATGACATTGATCTCGTCCAGAGGCTTTTGGAACATTTCATAATTCAAGAGCAGACAGAAAGTTCAAGTCCTAGTAGATATCCATTCCACGATAAACATATGCAGGATGGAAGTCAAAGGGGTACAAATCTAAATGCCAAGATGAGGGTGGCAAGGCTCGTTGACAGTTACTTAACAGAAGTATCTAGAGATAGAAATCTTTCCTTGACAAAGTTTCAGGTCTTGGCAGAGGCTTTGCCAGATTCAGCAAGAACATGTGATGATGGACTTTATCGAGCAATTGATTCCTATCTTAAG................................................................................................................................................................................................................................................................................................................................................................GCCCATCCAACACTCTCAGAACATGAAAGAAAGAGGCTTTGCAGGGTGATGGATTGCCAGAAACTCTCTGTTGATGCTTGCATGCACGCTGCTCAGAATGAAAGGCTCCCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228221" ref_strand="+" ref_description="SGN-E228221 [cLED-2-D11]">
      <seq>tggagagggggtctccatatgataatagcaggatcaggagaagaaataccaactgtccaggccaaagatcaaaggatgattgttgaaagcctaattagcatactcccacaacagaaggacagtgtttcatgtagcttccttcttcgactattgaggatggcaaacatgcttaaagtggctccagctttgataacagaactggagaaacgcgtaggcatgcaatttgagcaggctacattggctgatctcctcataccatcttaccataaaagtgaaaccatgtatgacattgatctcgtccagaggcttttggaacatttcataattcaagagcagacagaaagttcaagtcctagtagatatccattccacgataaacatatgcaggatggaagtcaaaggggtacaaatctaaatgccaagatgagggtggcaaggctcgttgacagttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="31224" stop="32276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31524" g_stop="31976" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E228221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31524" e_stop="31976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGAGGGGGTCTCCATATGATAATAGCAGGATCAGGAGAAGAAATACCAACTGTCCAGGCCAAAGATCAAAGGATGATTGTTGAAAGCCTAATTAGCATACTCCCACAACAGAAGGACAGTGTTTCATGTAGCTTCCTTCTTCGACTATTGAGGATGGCAAACATGCTTAAAGTGGCTCCAGCTTTGATAACAGAACTGGAGAAACGCGTAGGCATGCAATTTGAGCAGGCTACATTGGCTGATCTCCTCATACCATCTTACCATAAAAGTGAAACCATGTATGACATTGATCTCGTCCAGAGGCTTTTGGAACATTTCATAATTCAAGAGCAGACAGAAAGTTCAAGTCCTAGTAGATATCCATTCCACGATAAACATATGCAGGATGGAAGTCAAAGGGGTACAAATCTAAATGCCAAGATGAGGGTGGCAAGGCTCGTTGACAGTTAC</genome_strand>
        <mrna_strand>TGGAGAGGGGGTCTCCATATGATAATAGCAGGATCAGGAGAAGAAATACCAACTGTCCAGGCCAAAGATCAAAGGATGATTGTTGAAAGCCTAATTAGCATACTCCCACAACAGAAGGACAGTGTTTCATGTAGCTTCCTTCTTCGACTATTGAGGATGGCAAACATGCTTAAAGTGGCTCCAGCTTTGATAACAGAACTGGAGAAACGCGTAGGCATGCAATTTGAGCAGGCTACATTGGCTGATCTCCTCATACCATCTTACCATAAAAGTGAAACCATGTATGACATTGATCTCGTCCAGAGGCTTTTGGAACATTTCATAATTCAAGAGCAGACAGAAAGTTCAAGTCCTAGTAGATATCCATTCCACGATAAACATATGCAGGATGGAAGTCAAAGGGGTACAAATCTAAATGCCAAGATGAGGGTGGCAAGGCTCGTTGACAGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E389585" ref_strand="+" ref_description="SGN-E389585 [TUS-4-I13](-)">
      <seq>tgatgatggactttatcgagcaattgattcctatcttaaggcccatccaacactctcagaacatgaaagaaagaggctttgcagggtgatggattgccagaaactctctgttgatgcttgcatgcacgctgctcagaatgaaaggctcccactacgagtggtggtgcaagttctcttctctgagcaggtgaagataagcaatgcaatagccaatatctctctcaaagatgaaggggaaactcattatcaacccctggtatcacaccataagtcattgcttgaagcaacgccacaatcatttcaagagggatggacagcagccaagaaggacataaacactcttaagtttgaactagagactgtgaagactaaatacgtagaactccaaaatgacatggttgacttacagagacagttcgataagattgcaaaaccaaaacaagcctcagcatggactgcaggttggaaaaagttgagcaagctcacaaaaacgacaaatgtagaaacacatgacatcagtagtcagatcccaaatgctgaacagaccacaaagcctagaaggtggagaaattccatttcctgagaaggaaaggctatgatagaagactatcggttacaagactacctcacagagtcattatgtgttacctaatattcaaattatcatgcttctcctatcacaggagtagttaagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="31763" stop="33411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32063" g_stop="32102" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32103" i_stop="32454" i_length="352">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32455" g_stop="33111" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="697" r_length="657" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E389585" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32063" e_stop="32102"/>
          <exon e_start="32455" e_stop="33111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATGGACTTTATCGAGCAATTGATTCCTATCTTAAGGTATTTTAATCCAATCCTGTCAATTTATTGTTGGGTGCATCCTTAATTGATATCCTTAAAGCCATTGCTGTTGAGCTTGTAGTTTGATTTATCATGAATGTAGTTTGCCTTTCTGTTCTGAACTCTCAATGTTCCAATATTAGCCTGCTTACATATCTTAATAGTAAACTTACAGTTATAACAAGTGGCATGGTTAAGAATTCTAGAATGTTGTATATGCTAAAGATCAAATTGATCACATAGAAGTAAATCGTCTGTAAATATTGAAATTATGCTGTCTGCATCATAGAATTCTAGCCCAACATGCTTATTTTTTTAACAGAAACTCACTCACTGATATACAACATAACAGGCCCATCCAACACTCTCAGAACATGAAAGAAAGAGGCTTTGCAGGGTGATGGATTGCCAGAAACTCTCTGTTGATGCTTGCATGCACGCTGCTCAGAATGAAAGGCTCCCACTACGAGTGGTGGTGCAAGTTCTCTTCTCTGAGCAGGTGAAGATAAGCAATGCAATAGCCAATATCTCTCTCAAAGATGAAGGGGAAACTCATTATCAACCCCTGGTATCACACCATAAGTCATTGCTTGAAGCAACGCCACAATCATTTCAAGAGGGATGGACAGCAGCCAAGAAGGACATAAACACTCTTAAGTTTGAACTAGAGACTGTGAAGACTAAATACGTAGAACTCCAAAATGACATGGTTGACTTACAGAGACAGTTCGATAAGATTGCAAAACCAAAACAAGCCTCAGCATGGACTGCAGGTTGGAAAAAGTTGAGCAAGCTCACAAAAACGACAAATGTAGAAACACATGACATCAGTAGTCAGATCCCAAATGCTGAACAGACCACAAAGCCTAGAAGGTGGAGAAATTCCATTTCCTGAGAAGGAAAGGCTATGATAGAAGACTATCGGTTACAAGACTACCTCACAGAGTCATTATGTGTTACCTAATATTCAAATTATCATGCTTCTCCTATCACAAGAGTAGTTAAGACT</genome_strand>
        <mrna_strand>TGATGATGGACTTTATCGAGCAATTGATTCCTATCTTAAG................................................................................................................................................................................................................................................................................................................................................................GCCCATCCAACACTCTCAGAACATGAAAGAAAGAGGCTTTGCAGGGTGATGGATTGCCAGAAACTCTCTGTTGATGCTTGCATGCACGCTGCTCAGAATGAAAGGCTCCCACTACGAGTGGTGGTGCAAGTTCTCTTCTCTGAGCAGGTGAAGATAAGCAATGCAATAGCCAATATCTCTCTCAAAGATGAAGGGGAAACTCATTATCAACCCCTGGTATCACACCATAAGTCATTGCTTGAAGCAACGCCACAATCATTTCAAGAGGGATGGACAGCAGCCAAGAAGGACATAAACACTCTTAAGTTTGAACTAGAGACTGTGAAGACTAAATACGTAGAACTCCAAAATGACATGGTTGACTTACAGAGACAGTTCGATAAGATTGCAAAACCAAAACAAGCCTCAGCATGGACTGCAGGTTGGAAAAAGTTGAGCAAGCTCACAAAAACGACAAATGTAGAAACACATGACATCAGTAGTCAGATCCCAAATGCTGAACAGACCACAAAGCCTAGAAGGTGGAGAAATTCCATTTCCTGAGAAGGAAAGGCTATGATAGAAGACTATCGGTTACAAGACTACCTCACAGAGTCATTATGTGTTACCTAATATTCAAATTATCATGCTTCTCCTATCACAGGAGTAGTTAAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550000" ref_strand="+" ref_description="SGN-E550000 [TUS-5-I13](-)">
      <seq>cacaccataagtcattgcttgaagcaactccacaatcatttcaagagggatggacagcagccaagaaggacataaactctcttaagtttgaactagagactgtgaagactaaatgcgtagaactaccaaaatgccatggttgacttacagagtcagttggataagattgcacaaccaaagcaagcctcagcatggactgcaggttggaaaaagttgagcaagctcacaaaaacgacaaatgtagaaacacatgacatcagtagtcagatcccaaatggagaacagaccacaaagcctcgaaggtggagaaattccatttcatgagaaggaaaggctatgatagaagactatcggttacaagactacctcacagagtcattatgtgttacctaatattcaaattatcatgcttctcctatcacaagagtagttaagactttcattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="32375" stop="33421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32675" g_stop="33121" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E550000" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32675" e_stop="33121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACCATAAGTCATTGCTTGAAGCAACGCCACAATCATTTCAAGAGGGATGGACAGCAGCCAAGAAGGACATAAACACTCTTAAGTTTGAACTAGAGACTGTGAAGACTAAATACGTAGAACT-CCAAAATGACATGGTTGACTTACAGAGACAGTTCGATAAGATTGCAAAACCAAAACAAGCCTCAGCATGGACTGCAGGTTGGAAAAAGTTGAGCAAGCTCACAAAAACGACAAATGTAGAAACACATGACATCAGTAGTCAGATCCCAAATGCTGAACAGACCACAAAGCCTAGAAGGTGGAGAAATTCCATTTCCTGAGAAGGAAAGGCTATGATAGAAGACTATCGGTTACAAGACTACCTCACAGAGTCATTATGTGTTACCTAATATTCAAATTATCATGCTTCTCCTATCACAAGAGTAGTTAAGACTTTCATTTTCA</genome_strand>
        <mrna_strand>CACACCATAAGTCATTGCTTGAAGCAACTCCACAATCATTTCAAGAGGGATGGACAGCAGCCAAGAAGGACATAAACTCTCTTAAGTTTGAACTAGAGACTGTGAAGACTAAATGCGTAGAACTACCAAAATGCCATGGTTGACTTACAGAGTCAGTTGGATAAGATTGCACAACCAAAGCAAGCCTCAGCATGGACTGCAGGTTGGAAAAAGTTGAGCAAGCTCACAAAAACGACAAATGTAGAAACACATGACATCAGTAGTCAGATCCCAAATGGAGAACAGACCACAAAGCCTCGAAGGTGGAGAAATTCCATTTCATGAGAAGGAAAGGCTATGATAGAAGACTATCGGTTACAAGACTACCTCACAGAGTCATTATGTGTTACCTAATATTCAAATTATCATGCTTCTCCTATCACAAGAGTAGTTAAGACTTTCATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543720" ref_strand="+" ref_description="SGN-E543720 [TUS-65-K23](-)">
      <seq>agaatgagtagctatgatgttttgatctttctgttgattccacaaagggcagtgatggcattgatgttgaagaagtgcattgaataagggggcccttctctctaagcttatcatgaaaaggctgatggagagacatgatcaaatcttgtcttaaagttaggtttgtttccactttggatgggtgagttgtagttggagacttgtgagttttcagcgtggtgtctttttatgagcttgatggacccttgtgtttcatcatattattgctgtgtgtgttgtctttatgcttttttctactttaaatgatactagtaataagatttttttattttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="36455" stop="35524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36155" g_stop="35823" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="334" polyA_stop="344"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E543720" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36155" e_stop="35823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAGTAGCTATGATGTTTTGATCTTTCTGTTGATTCCACAAAGGGCAGTGATGGCATTGATGTTGAAGAAGTGCATTGAATAAGGGGGCCCTTCTCTCTAAGCTTATCATGAAAAGGCTGATGGAGAGACATGATCAAATCTTGTCTTAAAGTTAGGTTTGTTTCCACTTTGGATGGGTGAGTTGTAGTTGGAGACTTGTGAGTTTTCAGCGTGGTGTCTTTTTATGAGCTTGATGGACCCTTGTGTTTCATCATATTATTGCTGTGTGTGTTGTCTTTATGCTTTTTTCTACTTTAAATGATACTAGTAATAAGATTTTTTTATTTTT</genome_strand>
        <mrna_strand>AGAATGAGTAGCTATGATGTTTTGATCTTTCTGTTGATTCCACAAAGGGCAGTGATGGCATTGATGTTGAAGAAGTGCATTGAATAAGGGGGCCCTTCTCTCTAAGCTTATCATGAAAAGGCTGATGGAGAGACATGATCAAATCTTGTCTTAAAGTTAGGTTTGTTTCCACTTTGGATGGGTGAGTTGTAGTTGGAGACTTGTGAGTTTTCAGCGTGGTGTCTTTTTATGAGCTTGATGGACCCTTGTGTTTCATCATATTATTGCTGTGTGTGTTGTCTTTATGCTTTTTTCTACTTTAAATGATACTAGTAATAAGATTTTTTTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543721" ref_strand="+" ref_description="SGN-E543721 [TUS-65-K23]">
      <seq>agaatgagtagctatgatgttttgatctttctgttgattccacaaagggcagtgatggcattgatgttgaagaagtgcattgaataagggggcccttctctctaagcttatcatgaaaaggctgatggagagacatgatcaaatcttgtcttaaagttaggtttgtttccactttggatgggtgagttgtagttggagacttgtgagttttcagcgtggtgtctttttatgagcttgatggacccttgtgtttcatcatattattgctgtgtgtgttgtctttatgcttttttctactttaaatgatactagtaataagatttttttatttttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="36455" stop="35522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36155" g_stop="35823" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="335" polyA_stop="345"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E543721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36155" e_stop="35823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAGTAGCTATGATGTTTTGATCTTTCTGTTGATTCCACAAAGGGCAGTGATGGCATTGATGTTGAAGAAGTGCATTGAATAAGGGGGCCCTTCTCTCTAAGCTTATCATGAAAAGGCTGATGGAGAGACATGATCAAATCTTGTCTTAAAGTTAGGTTTGTTTCCACTTTGGATGGGTGAGTTGTAGTTGGAGACTTGTGAGTTTTCAGCGTGGTGTCTTTTTATGAGCTTGATGGACCCTTGTGTTTCATCATATTATTGCTGTGTGTGTTGTCTTTATGCTTTTTTCTACTTTAAATGATACTAGTAATAAGATTTTTTTATTTTT</genome_strand>
        <mrna_strand>AGAATGAGTAGCTATGATGTTTTGATCTTTCTGTTGATTCCACAAAGGGCAGTGATGGCATTGATGTTGAAGAAGTGCATTGAATAAGGGGGCCCTTCTCTCTAAGCTTATCATGAAAAGGCTGATGGAGAGACATGATCAAATCTTGTCTTAAAGTTAGGTTTGTTTCCACTTTGGATGGGTGAGTTGTAGTTGGAGACTTGTGAGTTTTCAGCGTGGTGTCTTTTTATGAGCTTGATGGACCCTTGTGTTTCATCATATTATTGCTGTGTGTGTTGTCTTTATGCTTTTTTCTACTTTAAATGATACTAGTAATAAGATTTTTTTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304375" ref_strand="+" ref_description="SGN-E304375 [cLEX-12-J20]">
      <seq>gaatgagtagctatgatgttttgatctttctgttgattccacaaagggcagtgatggcattgatgttgaagaagtgcattgaataagggggcccttctctctaagcttatcatgaaaaggctgatggagagacatgatcaaatcttgtcttaaagttaggtttgttcccactttggatgggtgagttgtagttggagacttgtgagttttcagcgtggtgtctttttatgagcttgatggacccttgtgtttcatcatattattgctgtgtgtgttgtctttatgcttttctctactttaaatgatactagtaataagatttttttatttttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="36454" stop="35522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36154" g_stop="35823" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="334" polyA_stop="344"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E304375" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36154" e_stop="35823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGAGTAGCTATGATGTTTTGATCTTTCTGTTGATTCCACAAAGGGCAGTGATGGCATTGATGTTGAAGAAGTGCATTGAATAAGGGGGCCCTTCTCTCTAAGCTTATCATGAAAAGGCTGATGGAGAGACATGATCAAATCTTGTCTTAAAGTTAGGTTTGTTTCCACTTTGGATGGGTGAGTTGTAGTTGGAGACTTGTGAGTTTTCAGCGTGGTGTCTTTTTATGAGCTTGATGGACCCTTGTGTTTCATCATATTATTGCTGTGTGTGTTGTCTTTATGCTTTTTTCTACTTTAAATGATACTAGTAATAAGATTTTTTTATTTTT</genome_strand>
        <mrna_strand>GAATGAGTAGCTATGATGTTTTGATCTTTCTGTTGATTCCACAAAGGGCAGTGATGGCATTGATGTTGAAGAAGTGCATTGAATAAGGGGGCCCTTCTCTCTAAGCTTATCATGAAAAGGCTGATGGAGAGACATGATCAAATCTTGTCTTAAAGTTAGGTTTGTTCCCACTTTGGATGGGTGAGTTGTAGTTGGAGACTTGTGAGTTTTCAGCGTGGTGTCTTTTTATGAGCTTGATGGACCCTTGTGTTTCATCATATTATTGCTGTGTGTGTTGTCTTTATGCTTTTCTCTACTTTAAATGATACTAGTAATAAGATTTTTTTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702684" ref_strand="+" ref_description="SGN-E702684 [FA19BF07]">
      <seq>ggattcttgagagcttgattcctgggataaagagcaaggacccgttgttggttattgatgaagcaatcaattacttgaagtctttgaggggtaaagccaaagccttaggatctgagctccctcaagagtatcccccagcctcttgttaaagaacagactagtatccaacccctacaacagtagcattatgactttttaggggtacagttgcttggatagtacagaaaagccgtatatcattatttggttgaaagtagttaaattgtgaagcatttgccatcctcatcagtcctacagtgcaacaagtattattatccactagaggaaaagatttagtgggattcttttgatcttttacttgcaaggggtagaacaaaaaggggaatgtctatggtcgacgaggaatgattatttttagcttttgtggttaagaaagtagaatttcaaagttcaaaagatgagtgctgtgaatgagggggaccctttaaaatcttgagaaaaccatggtttctatgcatgcgcatttggtgatttggggtcccaccatccaccctattatgtttcttgaattgaatgactgtatgatggtttacttttgtggttggttatgttggggtcagtttgttgcaactatttcgcttggtatttgctatctctcaccagcacagggtcagagtctcccactgttataggtcagaatgagtagctatgatgttttgatctttctgttgattccacaaagggcagtgatggcattgatgttgaagaagtgcattgaataagggggcccttctctctaagcttatcatgaaaaggctgatggagagacatgatcaaatcttgtcttaaagttaggtttgtttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="37150" stop="35685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36850" g_stop="35985" g_length="866"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="866" r_length="866" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E702684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36850" e_stop="35985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCTTGAGAGCTTGATTCCTGGGATAAAGAGCAAGGACCCGTTGTTGGTTATTGATGAAGCAATCAATTACTTGAAGTCTTTGAGGGGTAAAGCCAAAGCCTTAGGATCTGAGCTCCCTCAAGAGTATCCCCCAGCCTCTTGTTAAAGAACAGACTAGTATCCAACCCCTACAACAGTAGCATTATGACTTTTTAGGGGTACAGTTGCTTGGATAGTACAGAAAAGCCGTATATCATTATTTGGTTGAAAGTAGTTAAATTGTGAAGCATTTGCCATCCTCATCAGTCCTACAGTGCAACAAGTATTATTATCCACTAGAGGAAAAGATTTAGTGGGATTCTTTTGATCTTTTACTTGCAAGGGGTAGAACAAAAAGGGGAATGTCTATGGTCGACGAGGAATGATTATTTTTAGCTTTTGTGGTTAAGAAAGTAGAATTTCAAAGTTCAAAAGATGAGTGCTGTGAATGAGGGGGACCCTTTAAAATCTTGAGAAAACCATGGTTTCTATGCATGCGCATTTGGTGATTTGGGGTCCCACCATCCACCCTATTATGTTTCTTGAATTGAATGACTGTATGATGGTTTACTTTTGTGGTTGGTTATGTTGGGGTCAGTTTGTTGCAACTATTTCGCTTGGTATTTGCTATCTCTCACCAGCACAGGGTCAGAGTCTCCCACTGTTATAGGTCAGAATGAGTAGCTATGATGTTTTGATCTTTCTGTTGATTCCACAAAGGGCAGTGATGGCATTGATGTTGAAGAAGTGCATTGAATAAGGGGGCCCTTCTCTCTAAGCTTATCATGAAAAGGCTGATGGAGAGACATGATCAAATCTTGTCTTAAAGTTAGGTTTGTTTCCA</genome_strand>
        <mrna_strand>GGATTCTTGAGAGCTTGATTCCTGGGATAAAGAGCAAGGACCCGTTGTTGGTTATTGATGAAGCAATCAATTACTTGAAGTCTTTGAGGGGTAAAGCCAAAGCCTTAGGATCTGAGCTCCCTCAAGAGTATCCCCCAGCCTCTTGTTAAAGAACAGACTAGTATCCAACCCCTACAACAGTAGCATTATGACTTTTTAGGGGTACAGTTGCTTGGATAGTACAGAAAAGCCGTATATCATTATTTGGTTGAAAGTAGTTAAATTGTGAAGCATTTGCCATCCTCATCAGTCCTACAGTGCAACAAGTATTATTATCCACTAGAGGAAAAGATTTAGTGGGATTCTTTTGATCTTTTACTTGCAAGGGGTAGAACAAAAAGGGGAATGTCTATGGTCGACGAGGAATGATTATTTTTAGCTTTTGTGGTTAAGAAAGTAGAATTTCAAAGTTCAAAAGATGAGTGCTGTGAATGAGGGGGACCCTTTAAAATCTTGAGAAAACCATGGTTTCTATGCATGCGCATTTGGTGATTTGGGGTCCCACCATCCACCCTATTATGTTTCTTGAATTGAATGACTGTATGATGGTTTACTTTTGTGGTTGGTTATGTTGGGGTCAGTTTGTTGCAACTATTTCGCTTGGTATTTGCTATCTCTCACCAGCACAGGGTCAGAGTCTCCCACTGTTATAGGTCAGAATGAGTAGCTATGATGTTTTGATCTTTCTGTTGATTCCACAAAGGGCAGTGATGGCATTGATGTTGAAGAAGTGCATTGAATAAGGGGGCCCTTCTCTCTAAGCTTATCATGAAAAGGCTGATGGAGAGACATGATCAAATCTTGTCTTAAAGTTAGGTTTGTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725021" ref_strand="+" ref_description="SGN-E725021 [FC25DD03]">
      <seq>aatcggccgaattgaaaccctaaatcaagaagtcggagatttcatcaaaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44508" stop="14122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44206" g_stop="44071" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="150" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="184" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="246" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="299" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="42032" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="563" r_length="264" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42031" i_stop="40068" i_length="1964">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40067" g_stop="40029" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="602" r_length="39" r_score="0.564"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E725021" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44206" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="42032"/>
          <exon e_start="40067" e_stop="40029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAAATCAAGAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTATGGTCAACTCCAACTAATATGGGGTACTATTCTCCTTGTCGCATTCTATATGCTTGCCTATTGCCTTATGTATAATAGCCTAATGTTTCATCACAAAAATTGATAGCTTAAAAGAATTGGTGGAAACTCAATTTGACAAAACTAGGAGGAAACGATGGGAATGAGAATGTGAGTGTGATTGTCTTTGTGGTGTACCCTTGTGTCTTGCCCGTTATTCCCTTCTCCTGAAGGGTATGCTGGGTGGATCCCAGCTCTTATGCAGTGTTAAGAAACAAAGACCTGTAATTATCTGTGAGGCAACTCTTGATGTTCATGATAGTCTGAGGAATTTTCCAGTTTGTAGCTGGTGCTTGTCAACTTGATTGGCTTCTGTCAGGCAGTGTTTGATGACTATGTCATACTGTAATACCAGGTTCTTAATCACTGAATGTGTCATTTTGCAAGGAATGACAGCCTTCCCATTTATGAGCTATGATATATCTTATCCCTTTGCTGATGCACCATTCTAGTCCATGCGACATTGCCTGGAGCTTGAATGATCATATGAGCAATCTGGAATGACCTCATTACTTTGCTTTAGGCCACAAGTAGATGAGGTGATAATTTCAGAGATAGTGGTGTTTTTACGAGTCCAGCGGTGGAGTAATATTTGTCTTCATTGTATATCATGAAAACTTCGATTCCTAGTGTGGCATAGAAGAAGCCACACCATCTTAGATCCAGTTGATTGTGGCCAAAAAGGTGCACCATGAGGGTCTACCACATCAATCATTAGCTACCCACCTTATCATCAGTACCCCTCAATGGTTAGGGCTCTCCACAGTAAGATACTCATCTTGAAAGGAACTTTGTTGTTTGTTACATACTTTGTTTCTCAATTACCATTTAGAGATCAAATTGGTCTCTCTGGTAAGCCTTCAGTCATGTTAATTTGTTATTGTCTCACAACTCTACACATCTCTACTTCTGTGTCACTGCCAATTGTTACAATGTAAATAAATCAGCAACAAACTAACAAATCCCTTCAATTGATGCTAGTGGTTGCTTTGTGTCTTGAAAAGTGCAGACCTAAATTTACTCTTATGATTATCCATTATTTAAAAAATTACTTAATTATATGAAGTGGTTGTCGATTATTACTTATTGAATCTAATATAATATATAGCGAGTGGTTGAACCTGCTTTGGCTGAAAGTCTTATTTCACACCATGGTTTTAATCATTTTATTTTCTCTTTTGGAATCATGTGGAGTAGTAATTAAGCTTTTCAATTTACAATTATGCTTTCTGCTTAACTTTCTAATGATGTTTAATGGACCTTAAATACCCATTGCCTCCTAAAGTCACGGCCTGAGTCCTTAAAGCTAATCAATACTGGCATGATGATCCTCATAAATATCGAAGGCACAAGGGACTAAATTAAGTGTGCGTTTCATCATGTTTTATTGTCACAGCTTAAATTCACTTTTTTTTTCGTTGAATATAATCATTGCTAATAATTATACTTGATTGCAAAATCATCATTTTTGTTGATTTTGTTGCACGTTGATGTTTATAGTACTCAATTTGATCACTTTATGCGAGACAATTGGCCTGGTTTGAATCTTGAGTTCAAAATACTAGTGTTTCTTATACATTAAAATACAAGGATAATGGTAAAAAAGTATTTAAAACGTTACTCTCTTTTATTATTTGTTATTTCTTCTCAAAATAAATTTTTATTTTTATTTGTCACTTTTTTAAACATATAAACAAACAATCCCCTATTTTATTCTATGTTTTATTCCTAACATTCACGTTAATTTTCAAAACCGATCCTAGACATTGATTAGTAGGAACATGATAATATACTTATTATATCAATAATTGTTTTATTAATAGGTATTTCAACTCAAACGTGAAAAAAACAACAAGAAGAAA</genome_strand>
        <mrna_strand>AAACCCTAAATCAAGAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375812" ref_strand="+" ref_description="SGN-E375812 [TUS-15-K12](-)">
      <seq>tgatgttcatgatagtctgaggaattttccagtttgtagctggtgcttgtcaacttgattggcttctgtcaggcagtgtttgatgactatgtcatactgtaataccaggttcttaatcactgaatgtgtcattttgcaaggaatgacagccttcccatttatgagctatgatatatcttatccctttgctgatgcaccattctagtccatgcgacattgcctggagcttgaatgatcatatgagcaatctggaatgacctcattactttgctttaggccacaagtagatgaggtgataatttcagagatagtggtgtttttacgagtccagcggtggagtaatatttgtcttcattgtatatcatgaaaacttcgattcctagtgtggcatagaagaagccacaccatcttagatccagttgattgtggccaaaaaggtgcaccatgagggtctaccacatcaatcattagctacccaccttatcatcagtacccctcaatggttagggctctccacagtaagatactcatcttgaaaggaactttgttgtttgttacatactttgtttctcaattaccatttagagatcaaattggtctctctggtaagccttcagtcatgttaatttgttattgtctcacaactctacacatctctacttctgtgtcactgccaattgttacaatgtaaataaatcagcaacaaactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="41943" stop="40629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41643" g_stop="40923" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E375812" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41643" e_stop="40923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTTCATGATAGTCTGAGGAATTTTCCAGTTTGTAGCTGGTGCTTGTCAACTTGATTGGCTTCTGTCAGGCAGTGTTTGATGACTATGTCATACTGTAATACCAGGTTCTTAATCACTGAATGTGTCATTTTGCAAGGAATGACAGCCTTCCCATTTATGAGCTATGATATATCTTATCCCTTTGCTGATGCACCATTCTAGTCCATGCGACATTGCCTGGAGCTTGAATGATCATATGAGCAATCTGGAATGACCTCATTACTTTGCTTTAGGCCACAAGTAGATGAGGTGATAATTTCAGAGATAGTGGTGTTTTTACGAGTCCAGCGGTGGAGTAATATTTGTCTTCATTGTATATCATGAAAACTTCGATTCCTAGTGTGGCATAGAAGAAGCCACACCATCTTAGATCCAGTTGATTGTGGCCAAAAAGGTGCACCATGAGGGTCTACCACATCAATCATTAGCTACCCACCTTATCATCAGTACCCCTCAATGGTTAGGGCTCTCCACAGTAAGATACTCATCTTGAAAGGAACTTTGTTGTTTGTTACATACTTTGTTTCTCAATTACCATTTAGAGATCAAATTGGTCTCTCTGGTAAGCCTTCAGTCATGTTAATTTGTTATTGTCTCACAACTCTACACATCTCTACTTCTGTGTCACTGCCAATTGTTACAATGTAAATAAATCAGCAACAAACTAACAAATCCCTT</genome_strand>
        <mrna_strand>TGATGTTCATGATAGTCTGAGGAATTTTCCAGTTTGTAGCTGGTGCTTGTCAACTTGATTGGCTTCTGTCAGGCAGTGTTTGATGACTATGTCATACTGTAATACCAGGTTCTTAATCACTGAATGTGTCATTTTGCAAGGAATGACAGCCTTCCCATTTATGAGCTATGATATATCTTATCCCTTTGCTGATGCACCATTCTAGTCCATGCGACATTGCCTGGAGCTTGAATGATCATATGAGCAATCTGGAATGACCTCATTACTTTGCTTTAGGCCACAAGTAGATGAGGTGATAATTTCAGAGATAGTGGTGTTTTTACGAGTCCAGCGGTGGAGTAATATTTGTCTTCATTGTATATCATGAAAACTTCGATTCCTAGTGTGGCATAGAAGAAGCCACACCATCTTAGATCCAGTTGATTGTGGCCAAAAAGGTGCACCATGAGGGTCTACCACATCAATCATTAGCTACCCACCTTATCATCAGTACCCCTCAATGGTTAGGGCTCTCCACAGTAAGATACTCATCTTGAAAGGAACTTTGTTGTTTGTTACATACTTTGTTTCTCAATTACCATTTAGAGATCAAATTGGTCTCTCTGGTAAGCCTTCAGTCATGTTAATTTGTTATTGTCTCACAACTCTACACATCTCTACTTCTGTGTCACTGCCAATTGTTACAATGTAAATAAATCAGCAACAAACTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375813" ref_strand="+" ref_description="SGN-E375813 [TUS-15-K12]">
      <seq>ttctccttgtcgcattctatatgcttgcctattgccttatgtataatagcctaatgtttcatcacaaaaattgatagcttaaaagaattggtggaaactcaatttgacaaaactaggaggaaacgatgggaatgagaatgtgagtgtgattgtctttgtggtgtacccttgtgtcttgcccgttattcccttctcctgaagggtatgctgggtggatcccagctcttatgcagtgttaagaaacaaagacctgtaattatctgtgaggcaactcttgatgttcatgatagtctgaggaattttccagtttgtagctggtgcttgtcaacttgattggcttctgtcaggcagtgtttgatgactatgtcatactgtaataccaggttcttaatcactgaatgtgtcattttgcaaggaatgacagccttcccatttatgagctatgatatatcttatccctttgctgatgcaccattctagtccatgcgacattgcctggagcttgaatgatcatatgagcaatctggaatgacctcattactttgctttaggccacaagtagatgaggtgataatttcagagatagtggtgtttttacgagtccagcggtggagtaatatttgtcttcattgtatatcatgaaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="42218" stop="40971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41918" g_stop="41271" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E375813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41918" e_stop="41271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCTTGTCGCATTCTATATGCTTGCCTATTGCCTTATGTATAATAGCCTAATGTTTCATCACAAAAATTGATAGCTTAAAAGAATTGGTGGAAACTCAATTTGACAAAACTAGGAGGAAACGATGGGAATGAGAATGTGAGTGTGATTGTCTTTGTGGTGTACCCTTGTGTCTTGCCCGTTATTCCCTTCTCCTGAAGGGTATGCTGGGTGGATCCCAGCTCTTATGCAGTGTTAAGAAACAAAGACCTGTAATTATCTGTGAGGCAACTCTTGATGTTCATGATAGTCTGAGGAATTTTCCAGTTTGTAGCTGGTGCTTGTCAACTTGATTGGCTTCTGTCAGGCAGTGTTTGATGACTATGTCATACTGTAATACCAGGTTCTTAATCACTGAATGTGTCATTTTGCAAGGAATGACAGCCTTCCCATTTATGAGCTATGATATATCTTATCCCTTTGCTGATGCACCATTCTAGTCCATGCGACATTGCCTGGAGCTTGAATGATCATATGAGCAATCTGGAATGACCTCATTACTTTGCTTTAGGCCACAAGTAGATGAGGTGATAATTTCAGAGATAGTGGTGTTTTTACGAGTCCAGCGGTGGAGTAATATTTGTCTTCATTGTATATCATGAAAACTT</genome_strand>
        <mrna_strand>TTCTCCTTGTCGCATTCTATATGCTTGCCTATTGCCTTATGTATAATAGCCTAATGTTTCATCACAAAAATTGATAGCTTAAAAGAATTGGTGGAAACTCAATTTGACAAAACTAGGAGGAAACGATGGGAATGAGAATGTGAGTGTGATTGTCTTTGTGGTGTACCCTTGTGTCTTGCCCGTTATTCCCTTCTCCTGAAGGGTATGCTGGGTGGATCCCAGCTCTTATGCAGTGTTAAGAAACAAAGACCTGTAATTATCTGTGAGGCAACTCTTGATGTTCATGATAGTCTGAGGAATTTTCCAGTTTGTAGCTGGTGCTTGTCAACTTGATTGGCTTCTGTCAGGCAGTGTTTGATGACTATGTCATACTGTAATACCAGGTTCTTAATCACTGAATGTGTCATTTTGCAAGGAATGACAGCCTTCCCATTTATGAGCTATGATATATCTTATCCCTTTGCTGATGCACCATTCTAGTCCATGCGACATTGCCTGGAGCTTGAATGATCATATGAGCAATCTGGAATGACCTCATTACTTTGCTTTAGGCCACAAGTAGATGAGGTGATAATTTCAGAGATAGTGGTGTTTTTACGAGTCCAGCGGTGGAGTAATATTTGTCTTCATTGTATATCATGAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204729" ref_strand="+" ref_description="SGN-E204729 [cLEC-14-F14]">
      <seq>ttctccttgtcgcattctatatgcttgcctattgccttatgtataatagcctaatgtttcatcacaaaaattgatagcttaaaagaattggtggaaactcaatttgacaaaactaggaggaaacgatgggaatgagaatgtgagtgtgattgtctttgtggtgtacccttgtgtcttgcccgttattcccttctcctgaagggtatgctgggtggatcccagctcttatgcagtgttaagaaacaaagacctgtaattatctgtgaggcaactcttgatgttcatgatagtctgaggaattttccagtttgtagctggtgcttgtcaacttgattggcttctgtcangcagtgtttgatgactatgtcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="42218" stop="41247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41918" g_stop="41547" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E204729" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41918" e_stop="41547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCTTGTCGCATTCTATATGCTTGCCTATTGCCTTATGTATAATAGCCTAATGTTTCATCACAAAAATTGATAGCTTAAAAGAATTGGTGGAAACTCAATTTGACAAAACTAGGAGGAAACGATGGGAATGAGAATGTGAGTGTGATTGTCTTTGTGGTGTACCCTTGTGTCTTGCCCGTTATTCCCTTCTCCTGAAGGGTATGCTGGGTGGATCCCAGCTCTTATGCAGTGTTAAGAAACAAAGACCTGTAATTATCTGTGAGGCAACTCTTGATGTTCATGATAGTCTGAGGAATTTTCCAGTTTGTAGCTGGTGCTTGTCAACTTGATTGGCTTCTGTCAGGCAGTGTTTGATGACTATGTCATAC</genome_strand>
        <mrna_strand>TTCTCCTTGTCGCATTCTATATGCTTGCCTATTGCCTTATGTATAATAGCCTAATGTTTCATCACAAAAATTGATAGCTTAAAAGAATTGGTGGAAACTCAATTTGACAAAACTAGGAGGAAACGATGGGAATGAGAATGTGAGTGTGATTGTCTTTGTGGTGTACCCTTGTGTCTTGCCCGTTATTCCCTTCTCCTGAAGGGTATGCTGGGTGGATCCCAGCTCTTATGCAGTGTTAAGAAACAAAGACCTGTAATTATCTGTGAGGCAACTCTTGATGTTCATGATAGTCTGAGGAATTTTCCAGTTTGTAGCTGGTGCTTGTCAACTTGATTGGCTTCTGTCANGCAGTGTTTGATGACTATGTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303913" ref_strand="+" ref_description="SGN-E303913 [cLEX-4-G14]">
      <seq>ggagatttcatcaaaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacacattaaggcgctaataaatgctttgaagcttttgtctggataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44486" stop="14131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44186" g_stop="44071" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="150" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="212" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="265" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="42032" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="529" r_length="264" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42031" i_stop="41842" i_length="190">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.235" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41841" g_stop="41832" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="539" r_length="10" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E303913" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44186" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="42032"/>
          <exon e_start="41841" e_stop="41832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTATGGTCAACTCCAACTAATATGGGGTACTATTCTCCTTGTCGCATTCTATATGCTTGCCTATTGCCTTATGTATAATAGCCTAATGTTTCATCACAAAAATTGATAGCTTAAAAGAA</genome_strand>
        <mrna_strand>GGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACACATTAAGGCGCTAATAAATGCTTTGAAGCTTTTGTCTGGATAAAA..............................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340407" ref_strand="+" ref_description="SGN-E340407 [cTOF-2-N24]">
      <seq>caagaagtcggagatttcatcaaaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaagagtttgtatggtcaactccaactaatatggggtactattctccttgtcgcattctatatgcttgcctattgccttatgtataatagcctaatgtttcatcacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44495" stop="41549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44195" g_stop="44071" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="159" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="221" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="274" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="41841" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="729" r_length="455" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E340407" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44195" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTATGGTCAACTCCAACTAATATGGGGTACTATTCTCCTTGTCGCATTCTATATGCTTGCCTATTGCCTTATGTATAATAGCCTAATGTTTCATCACAAAAATTGATAGC</genome_strand>
        <mrna_strand>CAAGAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTATGGTCAACTCCAACTAATATGGGGTACTATTCTCCTTGTCGCATTCTATATGCTTGCCTATTGCCTTATGTATAATAGCCTAATGTTTCATCACAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721574" ref_strand="+" ref_description="SGN-E721574 [FC14BE01]">
      <seq>ttgaccggaaaaaatggccgtggagaaggaagttatcaaagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaagagtttgtatggtcaactccaactaatatggggtactattctccttgtcgcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44470" stop="41605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44171" g_stop="44071" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="135" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="197" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="250" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="41901" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="645" r_length="395" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="659"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E721574" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44171" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTATGGTCAACTCCAACTAATATGGGGTACTATTCTCCTTGTCGCATTCT</genome_strand>
        <mrna_strand>TTGACCGGAAAAAATGGCCGTGGAGAAGGAAGTTATCAAAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTATGGTCAACTCCAACTAATATGGGGTACTATTCTCCTTGTCGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732971" ref_strand="+" ref_description="SGN-E732971 [LB03CE08]">
      <seq>catgaagtcggagatttcatcaaaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaagagtttgtatggtcaactccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44495" stop="41629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44195" g_stop="44071" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="159" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="221" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="274" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="41925" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="645" r_length="371" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E732971" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44195" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTATGGTCAACTCCAACTAATATGGG</genome_strand>
        <mrna_strand>CATGAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTATGGTCAACTCCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351764" ref_strand="+" ref_description="SGN-E351764 [cTOS-8-F24]">
      <seq>tcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaagagtttgtatggtcaactccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="42607" stop="41629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42565" g_stop="42556" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42555" i_stop="42296" i_length="260">
            <donor d_prob="0.378" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42295" g_stop="41927" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="379" r_length="369" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E351764" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42565" e_stop="42556"/>
          <exon e_start="42295" e_stop="41927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTATGGTCAACTCCAACTAATATG</genome_strand>
        <mrna_strand>TCGATTAACG....................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTATGGTCAACTCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306384" ref_strand="-" ref_description="SGN-E306384 [cLEX-13-N3]">
      <seq>gcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacttgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaagagtttgtatggtcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44411" stop="41641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44111" g_stop="44071" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="75" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="137" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="190" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="41935" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="551" r_length="361" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E306384" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306384" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44111" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTATGGTCAACTCCAA</genome_strand>
        <mrna_strand>GCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACTTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTATGGTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E687871" ref_strand="+" ref_description="SGN-E687871 [T3_tus_81_G13]">
      <seq>gaaggaagttatcagagccgganatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44447" stop="41655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44147" g_stop="44071" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="111" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="173" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="226" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="41947" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="575" r_length="349" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E687871" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44147" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTAT</genome_strand>
        <mrna_strand>GAAGGAAGTTATCAGAGCCGGANATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689101" ref_strand="+" ref_description="SGN-E689101 [t3_tus_80_B14]">
      <seq>ttaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44446" stop="41655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44148" g_stop="44071" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="112" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="174" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="227" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="41948" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="575" r_length="348" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E689101" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44148" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTA</genome_strand>
        <mrna_strand>TTAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327245" ref_strand="+" ref_description="SGN-E327245 [cTOC-19-O21]">
      <seq>aaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44446" stop="41655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44146" g_stop="44071" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="110" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="172" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="225" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="41948" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="573" r_length="348" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E327245" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44146" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTA</genome_strand>
        <mrna_strand>AAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351170" ref_strand="+" ref_description="SGN-E351170 [cTOS-6-I15]">
      <seq>gtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44403" stop="41655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44103" g_stop="44071" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="67" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="129" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="182" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="41948" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="530" r_length="348" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E351170" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44103" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTA</genome_strand>
        <mrna_strand>GTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357730" ref_strand="+" ref_description="SGN-E357730 [cTOS-24-B8]">
      <seq>gtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44403" stop="41655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44103" g_stop="44071" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="67" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="129" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="182" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="41948" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="530" r_length="348" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E357730" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44103" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTA</genome_strand>
        <mrna_strand>GTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335032" ref_strand="+" ref_description="SGN-E335032 [cTOE-9-G6]">
      <seq>accggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44468" stop="41655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44168" g_stop="44071" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="132" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="194" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="247" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="41949" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="594" r_length="347" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E335032" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44168" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGT</genome_strand>
        <mrna_strand>ACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356127" ref_strand="+" ref_description="SGN-E356127 [cTOS-20-E3]">
      <seq>tcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaagagtttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="42607" stop="41648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42565" g_stop="42556" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42555" i_stop="42296" i_length="260">
            <donor d_prob="0.378" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42295" g_stop="41949" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="357" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="374"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E356127" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42565" e_stop="42556"/>
          <exon e_start="42295" e_stop="41949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGT</genome_strand>
        <mrna_strand>TCGATTAACG....................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352613" ref_strand="+" ref_description="SGN-E352613 [cTOS-9-N24]">
      <seq>attaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaagagtttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="42602" stop="41648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42562" g_stop="42556" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.714"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42555" i_stop="42296" i_length="260">
            <donor d_prob="0.378" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42295" g_stop="41949" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="354" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="371"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E352613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42562" e_stop="42556"/>
          <exon e_start="42295" e_stop="41949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGT</genome_strand>
        <mrna_strand>ATTAACG....................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345036" ref_strand="+" ref_description="SGN-E345036 [cTOF-22-D16]">
      <seq>tcggagatttcatcaaaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44488" stop="41655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44188" g_stop="44071" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="152" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="214" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="267" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="41955" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="608" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E345036" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44188" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGA</genome_strand>
        <mrna_strand>TCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327333" ref_strand="+" ref_description="SGN-E327333 [cTOC-19-H24]">
      <seq>ggagatttcatcaaaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44486" stop="41655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44186" g_stop="44071" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="150" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="212" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="265" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="41955" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="606" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="607" polyA_stop="617"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E327333" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44186" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGA</genome_strand>
        <mrna_strand>GGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747457" ref_strand="+" ref_description="SGN-E747457 [GI|45544870]">
      <seq>aaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44473" stop="41655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44173" g_stop="44071" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="137" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="199" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="252" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="41955" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="593" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="594" polyA_stop="617"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E747457" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44173" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGA</genome_strand>
        <mrna_strand>AAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712412" ref_strand="+" ref_description="SGN-E712412 [FB04DB06]">
      <seq>ggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44455" stop="41655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44155" g_stop="44071" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="119" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="181" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="234" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="41955" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="575" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="576" polyA_stop="592"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E712412" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44155" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGA</genome_strand>
        <mrna_strand>GGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E226555" ref_strand="+" ref_description="SGN-E226555 [cLEL-26-J13](-)">
      <seq>tctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44019" stop="41655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43719" g_stop="43686" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="87" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42295" g_stop="41955" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="428" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="441"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E226555" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43719" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGA</genome_strand>
        <mrna_strand>TCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E226413" ref_strand="+" ref_description="SGN-E226413 [cLEL-26-J13](-)">
      <seq>caagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44014" stop="41655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43714" g_stop="43686" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="82" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42295" g_stop="41955" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="423" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="424" polyA_stop="436"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E226413" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43714" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGA</genome_strand>
        <mrna_strand>CAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E229000" ref_strand="+" ref_description="SGN-E229000 [cLEL-29-N13](-)">
      <seq>catgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="43179" stop="41655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42879" g_stop="42849" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42295" g_stop="41955" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="372" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="373" polyA_stop="385"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E229000" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42879" e_stop="42849"/>
          <exon e_start="42295" e_stop="41955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGA</genome_strand>
        <mrna_strand>CATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228904" ref_strand="+" ref_description="SGN-E228904 [cLEL-29-N13](-)">
      <seq>agttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatggaatggatgtcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="43211" stop="41655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="64" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42295" g_stop="41961" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="399" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="403" polyA_stop="418"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E228904" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGAT</genome_strand>
        <mrna_strand>GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343791" ref_strand="+" ref_description="SGN-E343791 [cTOF-12-I1]">
      <seq>agatttcatcaaaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgcaagacaaattagttagtaatgaaatataatatgggaaatggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44484" stop="41662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44184" g_stop="44071" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="148" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="210" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="263" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="41967" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="592" r_length="329" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="610"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E343791" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44184" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="41967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGA</genome_strand>
        <mrna_strand>AGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721039" ref_strand="+" ref_description="SGN-E721039 [FC12CD05]">
      <seq>cctgagtcaaaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggagggaatgaaggagtactgggcatgcaattgggagaacttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccaccatggggtattcaacccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcaaaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataatggtcttctatgagactactaatttgccttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44049" stop="41701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43852" g_stop="43832" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="83" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="136" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42295" g_stop="42001" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="431" r_length="295" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E721039" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43852" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="42001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCA</genome_strand>
        <mrna_strand>CCTGAGTCAAAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAATGAAGGAGTACTGGGCATGCAATTGGGAGAACTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCACCATGGGGTATTCAACCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAAAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326812" ref_strand="+" ref_description="SGN-E326812 [cTOC-25-C1]">
      <seq>atcaccggaaaaaatgggagtggagaaggaagttatcaaagccggaaatggccccaaaccgcagcctggacaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggaacactaaggatccatgtcagcaacctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgtgagaagttgctcgattaacgtgcacccctgattatgcttatggagctggtggatttccagcatggggtattcagcccaactcttgtctggtttttgagattgaagtcctacgtgcacaatgagcaatttgctaacatttgggcattcacgatggagctgttgtacactatacactaaacagcttgagggtatcataactgctcatgtactcttttgctctaatgcaacttgttgcaacagattaacgcaataataaatgctttaaaactgttgtctggataatggtcttctatgagactactaatttgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44471" stop="41704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44171" g_stop="44071" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="135" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="197" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="250" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="42004" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="542" r_length="292" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E326812" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44171" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="42004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTT</genome_strand>
        <mrna_strand>ATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAAAGCCGGAAATGGCCCCAAACCGCAGCCTGGACAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAA....................................................................................CACTAAGGATCCATGTCAGCAACCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGTGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGAGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCTTGTCTGGTTTTTGAGATTGAAGTCCTACGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCACGATGGAGCTGTTGTACACTATACACTAAACAGCTTGAGGGTATCATAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGCAACAGATTAACGCAATAATAAATGCTTTAAAACTGTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334973" ref_strand="+" ref_description="SGN-E334973 [cTOE-9-N1]">
      <seq>gagatttcatcaaaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcacctggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44485" stop="41734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44185" g_stop="44071" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="150" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="212" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="265" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="42035" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="526" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E334973" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44185" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="42035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCA-CTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATA</genome_strand>
        <mrna_strand>GAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACCTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737324" ref_strand="+" ref_description="SGN-E737324 [LC09BC04]">
      <seq>cagaagtcggagatttcatcaaaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44493" stop="41734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44194" g_stop="44071" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="158" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="220" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="273" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="42038" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="531" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="545"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E737324" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44194" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="42038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGG</genome_strand>
        <mrna_strand>CAGAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738927" ref_strand="+" ref_description="SGN-E738927 [LC15BH09]">
      <seq>agatgtcggagatttcatcaaaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44493" stop="41734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44193" g_stop="44071" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="157" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="219" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="272" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="42038" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="530" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="545"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E738927" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44193" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="42038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGG</genome_strand>
        <mrna_strand>AGATGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740327" ref_strand="+" ref_description="SGN-E740327 [LC20DH06]">
      <seq>agatgtcggagatttcatcaaaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44493" stop="41734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44193" g_stop="44071" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="157" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="219" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="272" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="42038" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="530" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="545"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E740327" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44193" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="42038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGG</genome_strand>
        <mrna_strand>AGATGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737270" ref_strand="+" ref_description="SGN-E737270 [LC09AD06]">
      <seq>agaagtcggagatttcatcaaaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44493" stop="41734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44193" g_stop="44071" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="157" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="219" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="272" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="42038" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="530" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="545"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E737270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44193" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="42038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGG</genome_strand>
        <mrna_strand>AGAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737584" ref_strand="+" ref_description="SGN-E737584 [LC10BG09]">
      <seq>gcaggatctcggcacgaggagaagtcggagatttcatcaaaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgcaacttgttgaaacagattaaggcaataataaatgctttgaagcttttgtctggaaaaaaaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44493" stop="41734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44191" g_stop="44071" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="142" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="176" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="238" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="291" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="42038" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="549" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="564"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E737584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44191" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="42038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGG</genome_strand>
        <mrna_strand>AAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308749" ref_strand="+" ref_description="SGN-E308749 [cLEZ-11-C18]">
      <seq>ggagatttcatcaaaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatccaggccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggtgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacagtagacagcttgagggtatcagaactgctcatgtactcttttgctctaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44486" stop="41790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44186" g_stop="44071" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="150" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="212" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="265" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="42090" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="471" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E308749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44186" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="42090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCA</genome_strand>
        <mrna_strand>GGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335436" ref_strand="+" ref_description="SGN-E335436 [cTOE-2-F2]">
      <seq>cactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaagatccaagccagcagcctttctctttcaagatcggccaaggcaaagttatcaaaagatgggatgaaagagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggatttccagcatggggtattcagcccaactcagttctggtttttgagattgaagtcctaggcgcacaatgagcaatttgctaacatttgggcattcccgatggagctgttgtacactatacaatagacagcttgagggtatcagaactgctcatgtactcttttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44179" stop="41797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44086" g_stop="44071" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="50" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="112" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="165" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="42097" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="364" r_length="199" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E335436" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44086" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="42097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTC</genome_strand>
        <mrna_strand>CACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAAGATCCAAGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAAGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGCGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAATAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334802" ref_strand="+" ref_description="SGN-E334802 [cTOE-3-L14]">
      <seq>gaagtccgagatttcatcaaaatcaccggaaaaaatgggagtggagaaggaagttatcagagccggaaatggccccaaaccgcagcctggtcaaactgttaccgtccactgcactggttacgggaaagatagagacctgagtcagaagttctggagcactaaggatacaggccagcagcctttctctttcaagatcggccaaggcgaagttatcaaaggatgggatgaaggagtactgggcatgcaattgggagaagttgctcgattaacgtgcacccctgattatgcttatggtgctggtggattaccagcatggggtattcagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44492" stop="41939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44192" g_stop="44071" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43865" g_stop="43832" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="156" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43747" g_stop="43686" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="218" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42901" g_stop="42849" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="271" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42295" g_stop="42239" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="328" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E334802" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44192" e_stop="44071"/>
          <exon e_start="43865" e_stop="43832"/>
          <exon e_start="43747" e_stop="43686"/>
          <exon e_start="42901" e_stop="42849"/>
          <exon e_start="42295" e_stop="42239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACGGTGAGTCCTCTTTCTTTTTTCGCCAAAGAAAAAGATCCATTTTCTTTTCACAAGGGATTAATCGCATCAAACTAGTTAATCTCTAATTCAGTCTGTTTTTATTCTTTATAGATGAATCGGATCTTTAATATAGTTTGATTTTTAGTAAGTACAGTTTTTAGTAGTATTTTTGGTTAATATTGTTTTTATTGTTCTATGCCTGCAGGGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAGGTAAACTGTTTTTTTTATTTATTTATGAAGTTTGATGCAGGGTTATGTGTAGTATATATCTTTGCTTAATTTTACGTGTAACAGCACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAGGTACTTACGACTCCTGTATATCTCGATTTATATGATTTGTTTTTCCTAGTTTATGCGTTAGTATGTTATTATAAGTAATGCGTGATAATGTATTCAATTGGACAATTAATTTGGAAAATTTAGTAGTCTTATATTGGACTAACCATGAATGGAACTTATAGTAGTGATCCCACTACTTTTCTTATTGATTTCAATTGTCATTTTAAATTTCTCTCAAACCCAATTTCTGACCATAGAAGTGGTCCGGAAGCTTATAGCTCTTATACTGGACAGCTTTTAGTGCAAGAGAACTTACACTTTTGTAAAGCAAACAAAAGCTTACTACGTTGGTGGCCAAAGAGGTCTAAATGTGACATAGGTGGATTCATGTAGAGTTATAGATTTGTTGGCAAATGATGGTAGGTCTTTAAGTTGAGACAACCAACTTGCTATCATTCTAGAAAAGACACTATGGAAGGAGCTAAGATATCTTTTCCCTTGAAGCACACATATAGTTCAGCTGATTCTTCGGTCTCTTGAGTGATACCAGATTAATGTTGGATAAACTAACACTTCTTTCTCAAAGCAAAAGCTCATAGCTGACTTACGAAGTAAAATTTGGCTGTGGTGAACTTTTGTAGTGGCATTTTTAGATCCTTCTATATTTGTCAGACATGTGCCCATTATGAACAAATCCCCACCTCCTTCTGGGGTCTTCAAAGGGAGAAACTTAAGAACGCTGTAGACCATAGTGACAGTTCTCTCAGCTTGCATTTCTTTTATTCTTATGTCTCCTTATTTACAGGATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACGGTAAATGCCTTCTCTTTTCTTTTGATTCTCAGTTGAAGTCAAATCAATCACGGAGTTAATTATGTTTGTGTTATCCATGTTATGAAGTTTAGACTCCCATTGAGTTATGGGTTTATAGTCAGAAAACTAAGAGTCAATTGGAAAATAAGGAGGTTGATATCTCCTAGTTATTTTACATTGTTGAGTTTTGATTTATTTTCACTTCACTGAAATGTCTCTATCCTTTTGGCTGACTGGCTTATAGGAAGACATTATGATGTTTTCTACAATTGACACTCTAAAGTGGATTGATGGTTTCAGATAACTCCCCCTAATTGTCGTTTTTCAATTTCTGCCTCGTATTACTGCCCATTTCATGGTCACATCATCTCCATCTTTTTGATGGGATTGGCTGCAAAGTTTATAATGGAATGGCGATGATACAATAATTGCATTCTTCCTAAGAGTATTAATCTTACTATAATTGTGTACATATATGAAAAAAGTTTCTAGGCTTTTATGTATTAAGATCTTCTATAAGGAGAGGTTTAAACTGATGTCTTCAATTTTGCAGTGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCC</genome_strand>
        <mrna_strand>GAAGTCCGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG.............................................................................................................................................................................................................GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG....................................................................................CACTAAGGATACAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCGAAGTTATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTACCAGCATGGGGTATTCAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702576" ref_strand="+" ref_description="SGN-E702576 [FA19AE02]">
      <seq>ctctcttcaacatttttttctcttaaaagacaaaaaaaaggttattttttccccttaattgttgatgttagttgagttatagatcatctaatttcatttctgggtgtacctagaaactcaatttttcatggggttttcttgacctttttattgaatgcttccaacagaaaaaatcatggaggttgctagaattagacaattgttgctcctttggagtagaatcaaatctacccgtgtttctcttgtgggtggcaatcacaccgccgctaggttttgtactcgctaaattcacctttcttccgtcgctggattttcccctttctctctctctctctctctctcttcttgtagcacaaggtacgatcagtttttacagactcttccgataggtttgttgtaaaagcatggattttggttttgtgtattgccccaaaaggggggaaatcaaggggaatcattttcccgagttgaaaattgggttgcatcaagacgccgttttgattattaagctaccagattcgagggctttaaggattatgtcacggtctttgttctttgcaatggttcttttcatattgccgtcaattgggtccattttaagaggctcattcgatgtaattgatgattcttatgtgaattctgatgggagggacttcaatgtgttgcataatctttttcgcgatttggcagatgaaggccttgtcaagaaggggcataaaggacttgttttgagttctgagaatgatcgtttgatcaaagatttggaattgtcgaatgacaatgtggttgatttggtgcttgattcggatatggattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="50476" stop="51894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50776" g_stop="51594" g_length="819"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="819" r_length="819" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E702576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50776" e_stop="51594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCAACATTTTTTTCTCTTAAAAGACAAAAAAAAGGTTATTTTTTCCCCTTAATTGTTGATGTTAGTTGAGTTATAGATCATCTAATTTCATTTCTGGGTGTACCTAGAAACTCAATTTTTCATGGGGTTTTCTTGACCTTTTTATTGAATGCTTCCAACAGAAAAAATCATGGAGGTTGCTAGAATTAGACAATTGTTGCTCCTTTGGAGTAGAATCAAATCTACCCGTGTTTCTCTTGTGGGTGGCAATCACACCGCCGCTAGGTTTTGTACTCGCTAAATTCACCTTTCTTCCGTCGCTGGATTTTCCCCTTTCTCTCTCTCTCTCTCTCTCTCTTCTTGTAGCACAAGGTACGATCAGTTTTTACAGACTCTTCCGATAGGTTTGTTGTAAAAGCATGGATTTTGGTTTTGTGTATTGCCCCAAAAGGGGGGAAATCAAGGGGAATCATTTTCCCGAGTTGAAAATTGGGTTGCATCAAGACGCCGTTTTGATTATTAAGCTACCAGATTCGAGGGCTTTAAGGATTATGTCACGGTCTTTGTTCTTTGCAATGGTTCTTTTCATATTGCCGTCAATTGGGTCCATTTTAAGAGGCTCATTCGATGTAATTGATGATTCTTATGTGAATTCTGATGGGAGGGACTTCAATGTGTTGCATAATCTTTTTCGCGATTTGGCAGATGAAGGCCTTGTCAAGAAGGGGCATAAAGGACTTGTTTTGAGTTCTGAGAATGATCGTTTGATCAAAGATTTGGAATTGTCGAATGACAATGTGGTTGATTTGGTGCTTGATTCGGATATGGATTACA</genome_strand>
        <mrna_strand>CTCTCTTCAACATTTTTTTCTCTTAAAAGACAAAAAAAAGGTTATTTTTTCCCCTTAATTGTTGATGTTAGTTGAGTTATAGATCATCTAATTTCATTTCTGGGTGTACCTAGAAACTCAATTTTTCATGGGGTTTTCTTGACCTTTTTATTGAATGCTTCCAACAGAAAAAATCATGGAGGTTGCTAGAATTAGACAATTGTTGCTCCTTTGGAGTAGAATCAAATCTACCCGTGTTTCTCTTGTGGGTGGCAATCACACCGCCGCTAGGTTTTGTACTCGCTAAATTCACCTTTCTTCCGTCGCTGGATTTTCCCCTTTCTCTCTCTCTCTCTCTCTCTCTTCTTGTAGCACAAGGTACGATCAGTTTTTACAGACTCTTCCGATAGGTTTGTTGTAAAAGCATGGATTTTGGTTTTGTGTATTGCCCCAAAAGGGGGGAAATCAAGGGGAATCATTTTCCCGAGTTGAAAATTGGGTTGCATCAAGACGCCGTTTTGATTATTAAGCTACCAGATTCGAGGGCTTTAAGGATTATGTCACGGTCTTTGTTCTTTGCAATGGTTCTTTTCATATTGCCGTCAATTGGGTCCATTTTAAGAGGCTCATTCGATGTAATTGATGATTCTTATGTGAATTCTGATGGGAGGGACTTCAATGTGTTGCATAATCTTTTTCGCGATTTGGCAGATGAAGGCCTTGTCAAGAAGGGGCATAAAGGACTTGTTTTGAGTTCTGAGAATGATCGTTTGATCAAAGATTTGGAATTGTCGAATGACAATGTGGTTGATTTGGTGCTTGATTCGGATATGGATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393197" ref_strand="-" ref_description="SGN-E393197 [TUS-38-E23]">
      <seq>ttttttttttttttttgaaacaacgattaatcagtacatagcttagatacataaatagcaacaaacattaagcaaccattgcttcagtaagcaatttgaatttaaccaatagaaatacatcaattagaagttaattataaagatacggatagttgagagtcgtgtgtatgaagttacatttcaaggagtagtggtttgtgtggcatcagctggagtgttggggaatgggggaaatggaaaagtaggcagaccaccaaaggcgccgccaccagttgatggagtaggaaaacctggagtggtaggcataggaaatgaggggaaaccaccaccagttgatggagtcgtaggcataggaaatgaggggaaaccaccaccagtggatggagtagtaggcatagggaaaccaccaaattgctgaagacgtcgagctgttgtggcttgctcaattgacattactgatacaacaagcaccacaacggctatcatgacatttatcttcaccattttttgttgttgtaaaaaaatactactctttttgttgaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44076" stop="53615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52551" g_stop="52559" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52560" i_stop="52777" i_length="218">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52778" g_stop="53315" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="547" r_length="538" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E393197" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393197" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52551" e_stop="52559"/>
          <exon e_start="52778" e_stop="53315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGTTGGCATGAAGACTGTTGCCTCATTTATTTAATGTTTTTCATCTTCTATCCTTTTATTGCAAAGTTGGCATCTTTGTCGTTATCTTCATATATTCCTATTTTCTAACTGAGAAAATCTGTTTCTTTTCTTTCTATTATTTCATCTCTAGATAAGAATTTTTAAGTATAAAGTTCACCCCATCCACAAGTCAATGTTAAGTATATATGATAAATGAAGGTAGTAATATTGAAACAACGATTAATCAGTACATAGCTTAGATACATAAATAGCAACAAACATTAAGCAACCATTGCTTCAGTAAGCAATTTGAATTTAACCAATAGAAATACATCAATTAGAAGTTAATTATAAAGATACGGATAGTTGAGAGTCGTGTGTATGAAGTTACATTTCAAGGAGTAGTGGTTTGTGTGGCATCAGCTGGAGTGTTGGGGAATGGGGGAAATGGAAAAGTAGGCAGACCACCAAAGGCGCCGCCACCAGTTGATGGAGTAGGAAAACCTGGAGTCGTAGGCATAGGAAATGAGGGGAAACCACCACCAGTTGATGGAGTCGTAGGCATAGGAAATGAGGGGAAACCACCACCAGTGGATGGAGTAGTAGGCATAGGGAAACCACCAAATTGCTGAAGACGTCGAGCTGCTGTGGCTTGCTCAATTGACATTACTGATACAACAAGCACCACAACGGCTATCATGACATTTATCTTCACCATTTTTTGTTGTTGTAAAAAAATACTACTCTTTTTGTTGAATTTG</genome_strand>
        <mrna_strand>TTTTTTTTT..........................................................................................................................................................................................................................TTTTTTTGAAACAACGATTAATCAGTACATAGCTTAGATACATAAATAGCAACAAACATTAAGCAACCATTGCTTCAGTAAGCAATTTGAATTTAACCAATAGAAATACATCAATTAGAAGTTAATTATAAAGATACGGATAGTTGAGAGTCGTGTGTATGAAGTTACATTTCAAGGAGTAGTGGTTTGTGTGGCATCAGCTGGAGTGTTGGGGAATGGGGGAAATGGAAAAGTAGGCAGACCACCAAAGGCGCCGCCACCAGTTGATGGAGTAGGAAAACCTGGAGTGGTAGGCATAGGAAATGAGGGGAAACCACCACCAGTTGATGGAGTCGTAGGCATAGGAAATGAGGGGAAACCACCACCAGTGGATGGAGTAGTAGGCATAGGGAAACCACCAAATTGCTGAAGACGTCGAGCTGTTGTGGCTTGCTCAATTGACATTACTGATACAACAAGCACCACAACGGCTATCATGACATTTATCTTCACCATTTTTTGTTGTTGTAAAAAAATACTACTCTTTTTGTTGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345346" ref_strand="-" ref_description="SGN-E345346 [cTOF-13-I11]">
      <seq>ttttttttttttttttgaaacaacgattaatcagtacatagcttagatacataaatagcaacaaacattaagcaaccattgcttcagtaagcaatttgaatttaaccaatagaaatacatcaattagaagttaattataaagatacggatagttgagagtcgtgtgtatgaagttacatttcaaggagtagtggtttgtgtggcatcagctggagtgttggggaatgggggaaatggaaaagtaggcagaccaccaaaggcgccgccaccagttgatggagtaggaaaacctggagtcgtaggcataggaaatgaggggaaaccaccaccagttgatggagtcgtaggcataggaaatgaggggaaaccaccaccagtggatggagtagtaggcatagggaaaccaccaaattgctgaagacgtcgagctgctgtggcttgctcaattgacattactgatacaacaagcaccacaacggctatcatgacatttatcttcaccattttttgttgttgtaaaaaaatactactctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44076" stop="53604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52551" g_stop="52559" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52560" i_stop="52777" i_length="218">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52778" g_stop="53304" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="536" r_length="527" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E345346" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345346" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52551" e_stop="52559"/>
          <exon e_start="52778" e_stop="53304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGTTGGCATGAAGACTGTTGCCTCATTTATTTAATGTTTTTCATCTTCTATCCTTTTATTGCAAAGTTGGCATCTTTGTCGTTATCTTCATATATTCCTATTTTCTAACTGAGAAAATCTGTTTCTTTTCTTTCTATTATTTCATCTCTAGATAAGAATTTTTAAGTATAAAGTTCACCCCATCCACAAGTCAATGTTAAGTATATATGATAAATGAAGGTAGTAATATTGAAACAACGATTAATCAGTACATAGCTTAGATACATAAATAGCAACAAACATTAAGCAACCATTGCTTCAGTAAGCAATTTGAATTTAACCAATAGAAATACATCAATTAGAAGTTAATTATAAAGATACGGATAGTTGAGAGTCGTGTGTATGAAGTTACATTTCAAGGAGTAGTGGTTTGTGTGGCATCAGCTGGAGTGTTGGGGAATGGGGGAAATGGAAAAGTAGGCAGACCACCAAAGGCGCCGCCACCAGTTGATGGAGTAGGAAAACCTGGAGTCGTAGGCATAGGAAATGAGGGGAAACCACCACCAGTTGATGGAGTCGTAGGCATAGGAAATGAGGGGAAACCACCACCAGTGGATGGAGTAGTAGGCATAGGGAAACCACCAAATTGCTGAAGACGTCGAGCTGCTGTGGCTTGCTCAATTGACATTACTGATACAACAAGCACCACAACGGCTATCATGACATTTATCTTCACCATTTTTTGTTGTTGTAAAAAAATACTACTCTTTT</genome_strand>
        <mrna_strand>TTTTTTTTT..........................................................................................................................................................................................................................TTTTTTTGAAACAACGATTAATCAGTACATAGCTTAGATACATAAATAGCAACAAACATTAAGCAACCATTGCTTCAGTAAGCAATTTGAATTTAACCAATAGAAATACATCAATTAGAAGTTAATTATAAAGATACGGATAGTTGAGAGTCGTGTGTATGAAGTTACATTTCAAGGAGTAGTGGTTTGTGTGGCATCAGCTGGAGTGTTGGGGAATGGGGGAAATGGAAAAGTAGGCAGACCACCAAAGGCGCCGCCACCAGTTGATGGAGTAGGAAAACCTGGAGTCGTAGGCATAGGAAATGAGGGGAAACCACCACCAGTTGATGGAGTCGTAGGCATAGGAAATGAGGGGAAACCACCACCAGTGGATGGAGTAGTAGGCATAGGGAAACCACCAAATTGCTGAAGACGTCGAGCTGCTGTGGCTTGCTCAATTGACATTACTGATACAACAAGCACCACAACGGCTATCATGACATTTATCTTCACCATTTTTTGTTGTTGTAAAAAAATACTACTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712415" ref_strand="+" ref_description="SGN-E712415 [FB04DB10]">
      <seq>gcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgtttgttgctatttatgtatctaagctatgtactgattaatcgttgtttcaatattactaccttcatttatcataaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53537" stop="14122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53237" g_stop="52761" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52760" i_stop="52702" i_length="59">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52701" g_stop="52675" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="504" r_length="27" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E712415" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53237" e_stop="52761"/>
          <exon e_start="52701" e_stop="52675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCATATATACTTAACATTGACTTGTGGATGGGGTGAACTTTATACTTAAAAATTCTTATCTAGAGATGAAATAATAGAAAGAAAAGAAAC</genome_strand>
        <mrna_strand>GCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCAT...........................................................AAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215884" ref_strand="+" ref_description="SGN-E215884 [cLEL-15-P2](-)">
      <seq>tccatcaactggtggcggcgcctttggtggtctgcctactatttacatttcccccatttccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgtttgttgctatttatgtatctaagctatgtactgattaatcgttgtttcaatattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53348" stop="52478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53048" g_stop="52784" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52783" i_stop="52702" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52701" g_stop="52680" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="289" r_length="22" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E215884" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53048" e_stop="52784"/>
          <exon e_start="52701" e_stop="52680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACT-TTTCCATTTCCCCCA-TTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCATATATACTTAACATTGACTTGTGGATGGGGTGAACTTTATACTTAAAAATTCTTATCTAGAGATGAAATAATAGAAAGAAAA</genome_strand>
        <mrna_strand>TCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTATTTACATTTCCCCCATTTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCA..................................................................................ATATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215732" ref_strand="+" ref_description="SGN-E215732 [cLEL-15-P2](-)">
      <seq>ctccagctgatgccacacaagccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgtttgttgctatttatgtatctaagctatgtactgattaatcgttgtttcaatattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53283" stop="52478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52983" g_stop="52784" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52783" i_stop="52702" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52701" g_stop="52680" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="222" r_length="22" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E215732" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52983" e_stop="52784"/>
          <exon e_start="52701" e_stop="52680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCATATATACTTAACATTGACTTGTGGATGGGGTGAACTTTATACTTAAAAATTCTTATCTAGAGATGAAATAATAGAAAGAAAA</genome_strand>
        <mrna_strand>CTCCAGCTGATGCCACACAAGCCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCA..................................................................................ATATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711428" ref_strand="+" ref_description="SGN-E711428 [FB01DH11]">
      <seq>cattcaacaaaaagagtagtatttttttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgtttgttgctatttatgtatctaagctatgtactgattaatcgttgtttcaaaacgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53612" stop="52481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53313" g_stop="52784" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52783" i_stop="52702" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52701" g_stop="52682" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="550" r_length="20" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E711428" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53313" e_stop="52784"/>
          <exon e_start="52701" e_stop="52682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCAACAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCATATATACTTAACATTGACTTGTGGATGGGGTGAACTTTATACTTAAAAATTCTTATCTAGAGATGAAATAATAGAAAGAA</genome_strand>
        <mrna_strand>CATTCAACAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCA..................................................................................AAACGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223622" ref_strand="+" ref_description="SGN-E223622 [cLEL-14-K4](-)">
      <seq>tccatttcccccattccccaacactccagctgatgccacacaaacccctgctccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgtttgttgctatttatgtatctaagctatgtcctgattaaaaagaggaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53306" stop="52495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53006" g_stop="52793" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52792" i_stop="52702" i_length="91">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.556" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52701" g_stop="52683" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="233" r_length="19" r_score="0.737"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E223622" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53006" e_stop="52793"/>
          <exon e_start="52701" e_stop="52683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCATATATACTTAACATTGACTTGTGGATGGGGTGAACTTTATACTTAAAAATTCTTATCTAGAGATGAAATAATAGAAAGA</genome_strand>
        <mrna_strand>TCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCCCTGCTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTCCTGATTAAAA...........................................................................................AGAGGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712538" ref_strand="+" ref_description="SGN-E712538 [FB05AE07]">
      <seq>ctcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgtttgttgctatttatgtatctaagctatgtactgattaatcgttgtttcaatattactaccttcatttatcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53556" stop="14131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53257" g_stop="52761" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52760" i_stop="52702" i_length="59">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52701" g_stop="52686" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="513" r_length="16" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E712538" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53257" e_stop="52761"/>
          <exon e_start="52701" e_stop="52686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCATATATACTTAACATTGACTTGTGGATGGGGTGAACTTTATACTTAAAAATTCTTATCTAGAGATGAAATAATAGAA</genome_strand>
        <mrna_strand>CTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCAT...........................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733789" ref_strand="+" ref_description="SGN-E733789 [LB10DG10]">
      <seq>cgctcaaaaagagtagtatttttttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgtttgttgctatttatgtatctaagctatgtactgattaatcgttgtttcaatattactaccttcatttatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53606" stop="44076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53310" g_stop="52761" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52760" i_stop="52702" i_length="59">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.556" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52701" g_stop="52690" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="562" r_length="12" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E733789" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53310" e_stop="52761"/>
          <exon e_start="52701" e_stop="52690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCATATATACTTAACATTGACTTGTGGATGGGGTGAACTTTATACTTAAAAATTCTTATCTAGAGATGAAATAAT</genome_strand>
        <mrna_strand>CGCTCAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCAA...........................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265029" ref_strand="+" ref_description="SGN-E265029 [cLEI-2-K21]">
      <seq>tttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgtttgttgctatttatgtatctaagctatgtactgattaatcgttgtttcaatattactaccttcatttatcataagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53588" stop="52456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53288" g_stop="52761" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="529" polyA_stop="540"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E265029" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53288" e_stop="52761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCAT</genome_strand>
        <mrna_strand>TTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266320" ref_strand="+" ref_description="SGN-E266320 [cLEI-3-P12]">
      <seq>tttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgtttgttgctatttatgtatctaagctatgtactgattaatcgttgtttcaatattactaccttcatttatcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53588" stop="52456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53288" g_stop="52761" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="529" polyA_stop="540"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E266320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53288" e_stop="52761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCAT</genome_strand>
        <mrna_strand>TTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348722" ref_strand="+" ref_description="SGN-E348722 [cTOF-29-C3]">
      <seq>gctccaggttttcctacctcctcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgtttgttgctatttatgtatctaagctatgtactgattaatcgttgtttcaatattactaccttcatttatcatatatacttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53364" stop="52449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53065" g_stop="52761" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="314" polyA_stop="324"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E348722" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53065" e_stop="52761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCAT</genome_strand>
        <mrna_strand>GCTCCAGGTTTTCCTACCTCCTCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286984" ref_strand="+" ref_description="SGN-E286984 [cLES-6-I10]">
      <seq>tttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgtttgttgctatttatgtatctaagctatgtactgattaatcgttgtttcaatattactaccttcatttatcataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53326" stop="52456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53026" g_stop="52761" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E286984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53026" e_stop="52761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCAT</genome_strand>
        <mrna_strand>TTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284270" ref_strand="+" ref_description="SGN-E284270 [cLER-16-H23]">
      <seq>tttttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggtttttctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgttagttgctatttatgtatctaagctatgtactgattaatcgttgcttcaatattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53590" stop="52478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53290" g_stop="52768" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E284270" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53290" e_stop="52768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCAT</genome_strand>
        <mrna_strand>TTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTTCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTAGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGCTTCAATATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265107" ref_strand="+" ref_description="SGN-E265107 [cLEI-2-N4]">
      <seq>tttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcattaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgtttgttgctatttatgtatctaagctatgtactgattaatccgtgtttcaataatactaccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53588" stop="52469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53288" g_stop="52769" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E265107" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53288" e_stop="52769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCA</genome_strand>
        <mrna_strand>TTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCATTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCCGTGTTTCAATAATACTACCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282387" ref_strand="+" ref_description="SGN-E282387 [cLER-18-B15]">
      <seq>aagagtagtatttttttacaacaacaaaaaatggtgaagataaatgtcatgatagccgctgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttgggggatgacctatgcctactactccatccactggtggtggggtcccctcatttcctatgcctacgactccatcaactgggggtggcttgccctcatttgctatgcctacgactccaggttttgctactccatcaactggaggcggcgcctttggtggtctgcctacttttccatttcccacattccccaacactccagctgatgccacacaaaccactactccttgaagtgtagcttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggctaaattcaaattgcttactgaagcaatggttgcttaatgtttgctgctatttatggatctaagctatgtactgattaatcgttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53602" stop="52489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53302" g_stop="52778" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E282387" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53302" e_stop="52778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTA</genome_strand>
        <mrna_strand>AAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGCTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGGGGATGACCTATGCCTACTACTCCATCCACTGGTGGTGGGGTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGGGGTGGCTTGCCCTCATTTGCTATGCCTACGACTCCAGGTTTTGCTACTCCATCAACTGGAGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCACATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAGTGTAGCTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGCTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGCTGCTATTTATGGATCTAAGCTATGTACTGATTAATCGTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733993" ref_strand="+" ref_description="SGN-E733993 [LB11CA05]">
      <seq>attcaacaaaaagagtagtatttttttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgtttgttgctatttatgtatctaagctatgtactgattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53612" stop="52495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53312" g_stop="52796" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="529"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E733993" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53312" e_stop="52796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAACAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTA</genome_strand>
        <mrna_strand>ATTCAACAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734026" ref_strand="+" ref_description="SGN-E734026 [LB11CD02]">
      <seq>attcaacaaaaagagtagtatttttttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgtttgttgctatttatgtatctaagctatgtactgattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53612" stop="52495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53312" g_stop="52796" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="529"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E734026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53312" e_stop="52796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAACAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTA</genome_strand>
        <mrna_strand>ATTCAACAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347143" ref_strand="+" ref_description="SGN-E347143 [cTOF-25-K13]">
      <seq>ttgaattgacagctaattaaggagagatggatttcagttgatactctcaaccacataggagggtgaacaaattgaatgctcattatgtttctattcccatacatactactatataacttacccaaaacccctgcacatatacttaacaagaagcaaattcaacaaaaagagtagtatttttttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttccccccattcccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaatgcttactgaagcaatggttgcttaatggnttgtgctatttatgtatctaagctatgtactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53768" stop="52499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53468" g_stop="52799" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E347143" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53468" e_stop="52799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTGACAGCTAATTAAGGAGAGATGGATTTCAGTTGATACTCTCAACCACATAGGAGGGTGAACAAATTGAATGCTCATTATGTTTCTATTCCCATACATACTACTATATAACTTACCCAAAACCCCTGCACATATACTTAACAAGAAGCAAATTCAACAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGA</genome_strand>
        <mrna_strand>TTGAATTGACAGCTAATTAAGGAGAGATGGATTTCAGTTGATACTCTCAACCACATAGGAGGGTGAACAAATTGAATGCTCATTATGTTTCTATTCCCATACATACTACTATATAACTTACCCAAAACCCCTGCACATATACTTAACAAGAAGCAAATTCAACAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCCATTCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAA-TGCTTACTGAAGCAATGGTTGCTTAATGGNTTGTGCTATTTATGTATCTAAGCTATGTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294652" ref_strand="+" ref_description="SGN-E294652 [cLET-22-B15]">
      <seq>aaattcaacaaaaagagtagcatttttttacaacaacaaataatggtgaagataaatgtcatgatagccgttgtggtgcttgatgtatcagtaatgttaattgagcacgccacagcaactcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttgctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccattttccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggctaaattcaaattgcttactgaagcaatggttgcttaatgttggctgctatttatgtatgtaagctatgtactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53614" stop="52500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53314" g_stop="52800" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E294652" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53314" e_stop="52800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCAACAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTG</genome_strand>
        <mrna_strand>AAATTCAACAAAAAGAGTAGCATTTTTTTACAACAACAAATAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGATGTATCAGTAATGTTAATTGAGCACGCCACAGCAACTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTGCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTTCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGCTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTGGCTGCTATTTATGTATGTAAGCTATGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735162" ref_strand="+" ref_description="SGN-E735162 [LB14CD09]">
      <seq>aactaaaagagtagtatttttttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaatgtttgttgctatttatgtatctaagctatgtactgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53608" stop="52495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53308" g_stop="52800" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="525"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E735162" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53308" e_stop="52800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTG</genome_strand>
        <mrna_strand>AACTAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731999" ref_strand="+" ref_description="SGN-E731999 [LB01AA08]">
      <seq>caactaaaagagtagtatttttttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53609" stop="52536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53309" g_stop="52837" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="485"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E731999" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53309" e_stop="52837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTA</genome_strand>
        <mrna_strand>CAACTAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735386" ref_strand="+" ref_description="SGN-E735386 [LC01BE01]">
      <seq>caattgagtagtatttttttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53604" stop="52536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53305" g_stop="52837" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="470" polyA_stop="480"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E735386" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53305" e_stop="52837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTA</genome_strand>
        <mrna_strand>CAATTGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740209" ref_strand="+" ref_description="SGN-E740209 [LC20CB01]">
      <seq>aaaatgagtagtatttttttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53605" stop="52536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53305" g_stop="52837" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="470" polyA_stop="480"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E740209" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53305" e_stop="52837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTA</genome_strand>
        <mrna_strand>AAAATGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736146" ref_strand="+" ref_description="SGN-E736146 [LC04CB04]">
      <seq>aaaaagagtagtatttttttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53605" stop="52536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53305" g_stop="52837" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="470" polyA_stop="480"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E736146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53305" e_stop="52837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTA</genome_strand>
        <mrna_strand>AAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737408" ref_strand="+" ref_description="SGN-E737408 [LC09CG05]">
      <seq>aaaaagagtagtatttttttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53605" stop="52536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53305" g_stop="52837" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="470" polyA_stop="480"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E737408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53305" e_stop="52837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTA</genome_strand>
        <mrna_strand>AAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735844" ref_strand="+" ref_description="SGN-E735844 [LC03BE01]">
      <seq>atttttttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcactaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggtttccctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtggtttcccctcatttcctatgcctacgactccaggttttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatccgtatctttataattaacttctaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgcttaaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53593" stop="52536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53293" g_stop="52837" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E735844" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53293" e_stop="52837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTA</genome_strand>
        <mrna_strand>ATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCACTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283008" ref_strand="+" ref_description="SGN-E283008 [cLER-17-O22]">
      <seq>tttacaacaacaaaaaatggtgaagataaatgtcatgatagccgttgtggtgcttgttgtatcagtaatgtcaattgagcaagccacagcagctcgacgtcttcagcaatttggtggttttcctatgcctactactccatccactggtggtggtttcccctcatttcctatgcctacgactccatcaactggtggtgggttcccctaatttcctatgcctacgactccagggtttcctactccatcaactggtggcggcgcctttggtggtctgcctacttttccatttcccccattccccaacactccagctgatgccacacaaaccactactccttgaaatgtaacttcatacacacgactctcaactatgcggatctttataattaacttgtaattgatgtatttctattggttaaattcaaattgcttactgaagcaatggttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="53588" stop="52540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53288" g_stop="52840" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E283008" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53288" e_stop="52840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGC</genome_strand>
        <mrna_strand>TTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTTCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGGTTCCCCTAATTTCCTATGCCTACGACTCCAGGGTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATGCGGATCTTTATAATTAACTTGTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280830" ref_strand="+" ref_description="SGN-E280830 [cLEL-6-F8](-)">
      <seq>aagtaggcagaccaccaaaggcgccgccaccagttgatggagtaggaaaacctggagtcgtaggcataggaaatgaggggaaaccaccaccagttgatggagtcgtaggcataggaaatgaggggaaaccaccaccagtggatggagtagtaggcatagggaaaccaccaaattgctgaagacgtcgagctgctgtggcttgctcaattgacattactgatacaacaagcaccgcaacggctatcatgacatttatactcaccattttttgttgttgtaaaaaagtactactctttttgttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="52708" stop="53608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53008" g_stop="53316" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E280830" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53008" e_stop="53316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGGCAGACCACCAAAGGCGCCGCCACCAGTTGATGGAGTAGGAAAACCTGGAGTCGTAGGCATAGGAAATGAGGGGAAACCACCACCAGTTGATGGAGTCGTAGGCATAGGAAATGAGGGGAAACCACCACCAGTGGATGGAGTAGTAGGCATAGGGAAACCACCAAATTGCTGAAGACGTCGAGCTGCTGTGGCTTGCTCAATTGACATTACTGATACAACAAGCACCACAACGGCTATCATGACATTTATCTTCACCATTTTTTGTTGTTGTAAAAAAATACTACTCTTTTTGTTGAATTTGC</genome_strand>
        <mrna_strand>AAGTAGGCAGACCACCAAAGGCGCCGCCACCAGTTGATGGAGTAGGAAAACCTGGAGTCGTAGGCATAGGAAATGAGGGGAAACCACCACCAGTTGATGGAGTCGTAGGCATAGGAAATGAGGGGAAACCACCACCAGTGGATGGAGTAGTAGGCATAGGGAAACCACCAAATTGCTGAAGACGTCGAGCTGCTGTGGCTTGCTCAATTGACATTACTGATACAACAAGCACCGCAACGGCTATCATGACATTTATACTCACCATTTTTTGTTGTTGTAAAAAAGTACTACTCTTTTTGTT-CTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="82420" stop="81523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82120" g_stop="81796" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82120" e_stop="81796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATATACATTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTTCTGTGTATAAAGCGAGAAAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATA-TTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTAT-TTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="82420" stop="81523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82120" g_stop="81814" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82120" e_stop="81814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATATACATTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTTCT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATA-TTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545417" ref_strand="+" ref_description="SGN-E545417 [TUS-68-E3](-)">
      <seq>ccaactatgccaaagcctgaaattccagaacttcctaaaccaactcttccttcactttctccaccatacaaacccgctactccttgagtaaattatatgctactttcactctagtaggaggtacccgactgatattttgcgatttccatctgaatctatgaagcttgcgacctgagctgtgacatggagatagtattggatactttctgctaggagtagaaattttaattcttttataatagtatttgaattggatgtaccatgtttgatatgtcattatgagtattttattactttctatatatacagtatgtgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="83437" stop="82516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83137" g_stop="82811" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E545417" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83137" e_stop="82811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTATGCCAAAGCCTGAAATTCCAGAACTTCCTAAACCAACTCTTCCTTCACTTTCTCCACCATACAAACCCGCTACTCCTTGAGTAAATTATATGCTACTTTCACTCTAGTAGGAGGTACCCGACTGATATTTTGCGATTTCCATCTGAATCTATGAAGCTTGCGACCTGAGCTGTGACATGGAGATAGTATTGGATACTTTCTGCTAGGAGTAGAAATTTTAATTCTTTTATAATAGTATTTGAATTGGATGTACCATGTTTGATATGTCATTATGAGTATTTTATTACTTTCTATATATACAGTATGTGTAACAGAGCTCT</genome_strand>
        <mrna_strand>CCAACTATGCCAAAGCCTGAAATTCCAGAACTTCCTAAACCAACTCTTCCTTCACTTTCTCCACCATACAAACCCGCTACTCCTTGAGTAAATTATATGCTACTTTCACTCTAGTAGGAGGTACCCGACTGATATTTTGCGATTTCCATCTGAATCTATGAAGCTTGCGACCTGAGCTGTGACATGGAGATAGTATTGGATACTTTCTGCTAGGAGTAGAAATTTTAATTCTTTTATAATAGTATTTGAATTGGATGTACCATGTTTGATATGTCATTATGAGTATTTTATTACTTTCTATATATACAGTATGTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545418" ref_strand="+" ref_description="SGN-E545418 [TUS-68-E3]">
      <seq>ccaactatgccaaagcctgaaattccagaacttcctaaaccaactcttccttcactttctccaccatacaaacccgctactccttgagtaaattatatgctactttcactctagtaggaggtacccgactgatattttgcgatttccatctgaatctatgaagcttgcgacctgagctgtgacatggagatagtattggatactttctgctaggagtagaaattttaattcttttataatagtatttgaattggatgtaccatgtttgatatgtcattatgagtattttattactttctatatatacagtatgtgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="83437" stop="82516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83137" g_stop="82811" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E545418" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83137" e_stop="82811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTATGCCAAAGCCTGAAATTCCAGAACTTCCTAAACCAACTCTTCCTTCACTTTCTCCACCATACAAACCCGCTACTCCTTGAGTAAATTATATGCTACTTTCACTCTAGTAGGAGGTACCCGACTGATATTTTGCGATTTCCATCTGAATCTATGAAGCTTGCGACCTGAGCTGTGACATGGAGATAGTATTGGATACTTTCTGCTAGGAGTAGAAATTTTAATTCTTTTATAATAGTATTTGAATTGGATGTACCATGTTTGATATGTCATTATGAGTATTTTATTACTTTCTATATATACAGTATGTGTAACAGAGCTCT</genome_strand>
        <mrna_strand>CCAACTATGCCAAAGCCTGAAATTCCAGAACTTCCTAAACCAACTCTTCCTTCACTTTCTCCACCATACAAACCCGCTACTCCTTGAGTAAATTATATGCTACTTTCACTCTAGTAGGAGGTACCCGACTGATATTTTGCGATTTCCATCTGAATCTATGAAGCTTGCGACCTGAGCTGTGACATGGAGATAGTATTGGATACTTTCTGCTAGGAGTAGAAATTTTAATTCTTTTATAATAGTATTTGAATTGGATGTACCATGTTTGATATGTCATTATGAGTATTTTATTACTTTCTATATATACAGTATGTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308639" ref_strand="+" ref_description="SGN-E308639 [cLEZ-13-A17]">
      <seq>caactatgccaaagcctgaaattccagaacttcctaaaccaactcttccttcactttctccaccatacaaacccgctactccttgagtaaattatatgctactttcactctagtaggaggtacccgactgatattttgcgatttccatctgaatctatgaagcttgcgacctgagctgtgacatggagatagtattggatactttctgctaggagtagaaattttaattcttttataatagtatttgaattggatgtaccatgtttgatatgtcattatgagtattttattactttctatatatacagtatgtgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="83436" stop="82516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83136" g_stop="82811" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E308639" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83136" e_stop="82811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTATGCCAAAGCCTGAAATTCCAGAACTTCCTAAACCAACTCTTCCTTCACTTTCTCCACCATACAAACCCGCTACTCCTTGAGTAAATTATATGCTACTTTCACTCTAGTAGGAGGTACCCGACTGATATTTTGCGATTTCCATCTGAATCTATGAAGCTTGCGACCTGAGCTGTGACATGGAGATAGTATTGGATACTTTCTGCTAGGAGTAGAAATTTTAATTCTTTTATAATAGTATTTGAATTGGATGTACCATGTTTGATATGTCATTATGAGTATTTTATTACTTTCTATATATACAGTATGTGTAACAGAGCTCT</genome_strand>
        <mrna_strand>CAACTATGCCAAAGCCTGAAATTCCAGAACTTCCTAAACCAACTCTTCCTTCACTTTCTCCACCATACAAACCCGCTACTCCTTGAGTAAATTATATGCTACTTTCACTCTAGTAGGAGGTACCCGACTGATATTTTGCGATTTCCATCTGAATCTATGAAGCTTGCGACCTGAGCTGTGACATGGAGATAGTATTGGATACTTTCTGCTAGGAGTAGAAATTTTAATTCTTTTATAATAGTATTTGAATTGGATGTACCATGTTTGATATGTCATTATGAGTATTTTATTACTTTCTATATATACAGTATGTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312514" ref_strand="+" ref_description="SGN-E312514 [cLEZ-20-N23]">
      <seq>cctaagatgcctgagatccctaccatgccaaaatctgagcttcctagtgtgccaaaactagagattcctcccttgaaaaagtcagaaatccccgcagtgcccaagactgaggttcctcctgttatgaaaaagcctgaagttccaactctaccaaagcccgagctaccaagtctgccaaagccagaaatcccagaactaccaaagccaaaagtcgcagagcttccaaagctaaaaattccaacaatgccaaagcctgaagtacctactatgccaaagcatgaaatcccaaaaccaaaagtccaagagcttccaaagcctgaaataccaactacgccaaagcccgaaataccagaactaccaaagacaaaagttccagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="84289" stop="83310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83989" g_stop="83610" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E312514" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83989" e_stop="83610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGATGCCTGAGATCCCTACCATGCCAAAATCTGAGCTTCCTAGTATGCCAAAACTAGAGATTCCTCCCTTGAAAAAGTCAGAAATCCCCGCAGTGCCCAAGACTGAGGTTCCTCCTGTTATGAAAAAGCCTGAAGTTCCAACTCTACCAAAGCCCGAGCTACCAAGTCTGCCAAAGCCAGAAATCCCAGAACTACCAAAGCCAAAAGTCCCAGAGCTTCCAAAGCTAAAAATCCCAACAATGCCAAAGCCTGAAGTACCTACTATGCCAAAGCATGAAATCCCAAAACCAAAAGTCCAAGAGCTTCCAAAGCCTGAAATACCAACTACGCCAAAGCCCGAAATACCAGAACTACCAAAGACAAAAGTTCCAGAACT</genome_strand>
        <mrna_strand>CCTAAGATGCCTGAGATCCCTACCATGCCAAAATCTGAGCTTCCTAGTGTGCCAAAACTAGAGATTCCTCCCTTGAAAAAGTCAGAAATCCCCGCAGTGCCCAAGACTGAGGTTCCTCCTGTTATGAAAAAGCCTGAAGTTCCAACTCTACCAAAGCCCGAGCTACCAAGTCTGCCAAAGCCAGAAATCCCAGAACTACCAAAGCCAAAAGTCGCAGAGCTTCCAAAGCTAAAAATTCCAACAATGCCAAAGCCTGAAGTACCTACTATGCCAAAGCATGAAATCCCAAAACCAAAAGTCCAAGAGCTTCCAAAGCCTGAAATACCAACTACGCCAAAGCCCGAAATACCAGAACTACCAAAGACAAAAGTTCCAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541622" ref_strand="-" ref_description="SGN-E541622 [TUS-62-I5](-)">
      <seq>tttttttttttttttttttttttttttttttttgacccttcaactttcaagtctactgaatctaaaacagaaaattgtctgagtttacagatcataaactaacttggaacacataattctctgctatcctattctacatagtacataataatggtggagcactgcaagtgaaacatgttgaacagtattatacaatcctccaagaaatgaaatgaagtcaatagctgaaaaaaaatatcatataaaagaactgttgatgatataatcaaatagataagtgtttaatgcctccgtccattgccttaaagttttgtgttggagacatattcactcatatggtgtccatattcaaattttcggtaaatcagtcttcacaactgtttttctctatctactctacgcttaggacaaatatccttctacggaccatcatcacgccatgccacactaggcttctctcttccttcactctgcttcatatccactcttcagccttcatggaaaaaagaaagtacaaatagcagcaaaaaataaaatacaaatcagtcaactggtaaaccatataaccaggctacatacgcaggattgtgttaaatatactcgtcactcgttgtatgtgtaaggatttacagaaatgtttataatgtcctagaccactccacccatcagcttaaactttttggtcgaatactcatattctttctgaactagtatcctcatgtgcctattccatgcagtcatttcaactaccaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="44068" stop="85649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83687" g_stop="83718" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.531"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83719" i_stop="84626" i_length="908">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84627" g_stop="85349" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="755" r_length="723" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E541622" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541622" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83687" e_stop="83718"/>
          <exon e_start="84627" e_stop="85349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACTTTTGGTTTTGGGATTTCATGCTTTGGCATAGTAGGTACTTCAGGCTTTGGCATTGTTGGGATTTTTAGCTTTGGAAGCTCTGGGACTTTTGGCTTTGGTAGTTCTGGGATTTCTGGCTTTGGCAGACTTGGTAGCTCGGGCTTTGGTAGAGTTGGAACTTCAGGCTTTTTCATAACAGGAGGAACCTCAGTCTTGGGCACTGCGGGGATTTCTGACTTTTTCAAGGGAGGAATCTCTAGTTTTGGCATACTAGGAAGCTCAGATTTTGGCATGGTAGGGATCTCAGGCATCTTAGGCTTTGGCAAAGTTGGTAACTGGGGCTTCGAAAGAGTTGGTAGCTCAGGCTTTGGTATGGCTGGAAGCTCAGGCTTCGGCACAGTTGGGATTGCTGGAACTTTTGGGAGTTGTGGTTTAGGTATCTCAGGAACGGGTGTCTCGAGGAGATGGCGTGCAGTTGCACCACTTATGTTGCCATGAATGAAGAATATATTGAGAAATGCAAGCAGTAAGAGAGATGATACGTGGTAATGTTGAGCCATTTTTCAGCAAATGTTAGAAAAGCTAAAAGAAAATGCGTGTAAGAGTGGATGTGGCATTGGCTTCAACTCTGTTGCTTTATATAGGTTTAAGAATGCCATTACTAGGACTTTTAGGATTTTGTGATCTGAGTAGTTGAATTTCTCATCAAACTAATTAGCTTATAGTTTGGTACGGTACGTCAAAAGTCAATGTAGATGACCTAAATTGAACAATAGTGTAAACCTGTCACAGGCATATAGGTTAGGCTGGCAACCTCATAAAAATTCTTAGTATATGTGATTTCATCTCTAAACTAGTTATCAGATTGTAATACAAAATAACTTCCTTTCTCGATCATAGTCATTTCGTCCTTGATATTTTCTCTACAAATAAAAACAGAGGTAGGCAAAAGAGTGACCCTTCAACTTTCAAGTCTACTGAATCTAAAACAGAAAATTGTCTGAGTTTACAGATCATAAACTAACTTGGAACACATAATTCTCTGCTATCCTATTCTACATAGTACATAATAATGGTGGAGCACTGCAAGTGAAACATGTTGAACAGTATTATACAATCCTCCAAGAAATGAAATGAAGTCAATAGCTGAAAAAAAATATCATATAAAAGAACTGTTGATGATATAATCAAATAGATAAGTGTTTAATGCCTCCGTCCATTGCCTTAAAGTTTTGTGTTGGAGACATATTCACTCATATGGTGTCCATATTCAAATTTTCGGTAAATCAGTCTTCACAACTGTTTTTCTCTATCTACTCTACGCTTAGGACAAATATCCTTCTACGGACCATCATCACGCCATGCCACACTAGGCTTCTCTCTTCCTTCACTCTGCTTCATATCCACTCTTCAGCCTTCATGGAAAAAAGAAAGTACAAATAGCAGCAAAAAATAAAATACAAATCAGTCAACTGGTAAACCATATAACCAGGCTACATACGCAGGATTGTGTTAAATATACTCGTCACTCGTTGTATGTGTAAGGATTTACAGAAATGTTTATAATGTCCTAGACCACTCCACCCATCAGCTTAAACTTTTTGGTCGAATACTCATATTCTTTCTGAACTAGTATCCTCATGTGCCTATTCCATGCAGTCATTTCAACTACCAAAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCCTTCAACTTTCAAGTCTACTGAATCTAAAACAGAAAATTGTCTGAGTTTACAGATCATAAACTAACTTGGAACACATAATTCTCTGCTATCCTATTCTACATAGTACATAATAATGGTGGAGCACTGCAAGTGAAACATGTTGAACAGTATTATACAATCCTCCAAGAAATGAAATGAAGTCAATAGCTGAAAAAAAATATCATATAAAAGAACTGTTGATGATATAATCAAATAGATAAGTGTTTAATGCCTCCGTCCATTGCCTTAAAGTTTTGTGTTGGAGACATATTCACTCATATGGTGTCCATATTCAAATTTTCGGTAAATCAGTCTTCACAACTGTTTTTCTCTATCTACTCTACGCTTAGGACAAATATCCTTCTACGGACCATCATCACGCCATGCCACACTAGGCTTCTCTCTTCCTTCACTCTGCTTCATATCCACTCTTCAGCCTTCATGGAAAAAAGAAAGTACAAATAGCAGCAAAAAATAAAATACAAATCAGTCAACTGGTAAACCATATAACCAGGCTACATACGCAGGATTGTGTTAAATATACTCGTCACTCGTTGTATGTGTAAGGATTTACAGAAATGTTTATAATGTCCTAGACCACTCCACCCATCAGCTTAAACTTTTTGGTCGAATACTCATATTCTTTCTGAACTAGTATCCTCATGTGCCTATTCCATGCAGTCATTTCAACTACCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239706" ref_strand="+" ref_description="SGN-E239706 [cLED-33-C1]">
      <seq>gcaggagctgtgtaggcatttatgacttaatgagcatggtagatgatgcaatttgaaggttggctagatctttcttctatttatgtgtttgcaagtgacgtccccacaatgattgtgtgctaagtcagatataaactcagttttgttctgataagttcttatattacttccaacttggttcagttggagttggtgtaatgggaaagtctaaagttactaaagttgctgtttccagcctcaattttagcctgcgatacaacctctatgagaagttataatctgcttatcattccatttatgttgcagtgatacggaatccactttttctttttttaataacaaataaattccggagggtcggtttaaactgaatgcacacaaggaataaccaccaaaatctcaggtggagataaaagcagttcttttccattaggaccataaaattcccagggatgtttatgtactttgattggttaaaacttcaaaatgatatggctgccgttctttcatatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="86392" stop="85278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86092" g_stop="85578" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E239706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86092" e_stop="85578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAGCTGTGTAGGCATTTATGACTTAATGAGCATGGTAGATGATGCAATTTGAAGGTTGGCTAGATCTTTCTTCTATTTATGTGTTTGCAAGTGACGTCCCCACAATGATTGTGTGCTAAGTCAGATATAAACTCAGTTTTGTTCTGATAAGTTCTTATATTACTTCCAACTTGGTTCAGTTGGAGTTGGTGTAATGGGAAAGTCTAAAGTTACTAAAGTTGCTGTTTCCAGCCTCAATTTTAGCCTGCGATACAACCTCTATGAGAAGTTATAATCTGCTTATCATTCCATTTATGTTGCAGTGATACGGAATCCACTTTTTCTTTTTTTAATAACAAATAAATTCCGGAGGGTCGGTTTAAACTGAATGCACACAAGGAATAACCACCAAAATCTCAGGTGGAGATAAAAGCAGTTCTTTTCCATTAGGACCATAAAATTCCCAGGGATGTTTATGTACTTTGATTGGTTAAAACTTCAAAATGATATGGCTGCCGTTCTTTCATATGTT</genome_strand>
        <mrna_strand>GCAGGAGCTGTGTAGGCATTTATGACTTAATGAGCATGGTAGATGATGCAATTTGAAGGTTGGCTAGATCTTTCTTCTATTTATGTGTTTGCAAGTGACGTCCCCACAATGATTGTGTGCTAAGTCAGATATAAACTCAGTTTTGTTCTGATAAGTTCTTATATTACTTCCAACTTGGTTCAGTTGGAGTTGGTGTAATGGGAAAGTCTAAAGTTACTAAAGTTGCTGTTTCCAGCCTCAATTTTAGCCTGCGATACAACCTCTATGAGAAGTTATAATCTGCTTATCATTCCATTTATGTTGCAGTGATACGGAATCCACTTTTTCTTTTTTTAATAACAAATAAATTCCGGAGGGTCGGTTTAAACTGAATGCACACAAGGAATAACCACCAAAATCTCAGGTGGAGATAAAAGCAGTTCTTTTCCATTAGGACCATAAAATTCCCAGGGATGTTTATGTACTTTGATTGGTTAAAACTTCAAAATGATATGGCTGCCGTTCTTTCATATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235303" ref_strand="+" ref_description="SGN-E235303 [cLED-11-E2]">
      <seq>gcaggagctgtgtaggcatttatgacttaatgagcatggtagatgatgcaatttgaaggttggctagatctttcttctatttatgtgtttgcaagtgacgtccccacaatgattgtgtgctaagtcagatataaactcagttttgttctgataagttcttatattacttccaacttggttcagttggagttggtgtaatgggaaagtctaaagttactaaagttgctgtttccagcctcaattttagcctgcgatacaacctctatgagaagttataatctgcttatcattccatttatgttgcagtgatacggaatccactttttctttttttaataacaaataaattccggagggtcggtttaaactgaatgcacacaaggaataaccaccaaaatctcaggtggagataaaagcagttcttttccattaggaccataaaattcccagggatgtttatgtactttgattggttaaaacttcaaaatgatatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="86392" stop="85298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86092" g_stop="85598" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E235303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86092" e_stop="85598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAGCTGTGTAGGCATTTATGACTTAATGAGCATGGTAGATGATGCAATTTGAAGGTTGGCTAGATCTTTCTTCTATTTATGTGTTTGCAAGTGACGTCCCCACAATGATTGTGTGCTAAGTCAGATATAAACTCAGTTTTGTTCTGATAAGTTCTTATATTACTTCCAACTTGGTTCAGTTGGAGTTGGTGTAATGGGAAAGTCTAAAGTTACTAAAGTTGCTGTTTCCAGCCTCAATTTTAGCCTGCGATACAACCTCTATGAGAAGTTATAATCTGCTTATCATTCCATTTATGTTGCAGTGATACGGAATCCACTTTTTCTTTTTTTAATAACAAATAAATTCCGGAGGGTCGGTTTAAACTGAATGCACACAAGGAATAACCACCAAAATCTCAGGTGGAGATAAAAGCAGTTCTTTTCCATTAGGACCATAAAATTCCCAGGGATGTTTATGTACTTTGATTGGTTAAAACTTCAAAATGATATGG</genome_strand>
        <mrna_strand>GCAGGAGCTGTGTAGGCATTTATGACTTAATGAGCATGGTAGATGATGCAATTTGAAGGTTGGCTAGATCTTTCTTCTATTTATGTGTTTGCAAGTGACGTCCCCACAATGATTGTGTGCTAAGTCAGATATAAACTCAGTTTTGTTCTGATAAGTTCTTATATTACTTCCAACTTGGTTCAGTTGGAGTTGGTGTAATGGGAAAGTCTAAAGTTACTAAAGTTGCTGTTTCCAGCCTCAATTTTAGCCTGCGATACAACCTCTATGAGAAGTTATAATCTGCTTATCATTCCATTTATGTTGCAGTGATACGGAATCCACTTTTTCTTTTTTTAATAACAAATAAATTCCGGAGGGTCGGTTTAAACTGAATGCACACAAGGAATAACCACCAAAATCTCAGGTGGAGATAAAAGCAGTTCTTTTCCATTAGGACCATAAAATTCCCAGGGATGTTTATGTACTTTGATTGGTTAAAACTTCAAAATGATATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240083" ref_strand="+" ref_description="SGN-E240083 [cLED-32-A4]">
      <seq>gcaggagctgtgtaggcatttatgacttaatgagcatggtagatgatgccatttgaaggttggctagatctttcttctatttatgtgtttgcaagtgacgtccccacaatgattgtgtgctaagtcagatataaactcagttttgttctgataagttcttatattacttccaacttggttcagttggagttggtgtaatgggaaagtctaaagttactaaagttgctgtttccagcctcaattttagcctgcgatacaacctctatgagaagttataatctgcttatcattccatttatgttgcagtgatacggaatccactttttctttttttaataacaaataaattccggagggtcggtttaaactgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="86392" stop="85419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86092" g_stop="85719" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E240083" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86092" e_stop="85719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAGCTGTGTAGGCATTTATGACTTAATGAGCATGGTAGATGATGCAATTTGAAGGTTGGCTAGATCTTTCTTCTATTTATGTGTTTGCAAGTGACGTCCCCACAATGATTGTGTGCTAAGTCAGATATAAACTCAGTTTTGTTCTGATAAGTTCTTATATTACTTCCAACTTGGTTCAGTTGGAGTTGGTGTAATGGGAAAGTCTAAAGTTACTAAAGTTGCTGTTTCCAGCCTCAATTTTAGCCTGCGATACAACCTCTATGAGAAGTTATAATCTGCTTATCATTCCATTTATGTTGCAGTGATACGGAATCCACTTTTTCTTTTTTTAATAACAAATAAATTCCGGAGGGTCGGTTTAAACTGAATG</genome_strand>
        <mrna_strand>GCAGGAGCTGTGTAGGCATTTATGACTTAATGAGCATGGTAGATGATGCCATTTGAAGGTTGGCTAGATCTTTCTTCTATTTATGTGTTTGCAAGTGACGTCCCCACAATGATTGTGTGCTAAGTCAGATATAAACTCAGTTTTGTTCTGATAAGTTCTTATATTACTTCCAACTTGGTTCAGTTGGAGTTGGTGTAATGGGAAAGTCTAAAGTTACTAAAGTTGCTGTTTCCAGCCTCAATTTTAGCCTGCGATACAACCTCTATGAGAAGTTATAATCTGCTTATCATTCCATTTATGTTGCAGTGATACGGAATCCACTTTTTCTTTTTTTAATAACAAATAAATTCCGGAGGGTCGGTTTAAACTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734914" ref_strand="+" ref_description="SGN-E734914 [LB13DG04]">
      <seq>aaagccatctgctcccagagtttatattgatgattatgaggatgtgtttctgggattatcagagtcgagtgaggagtcagatgaggattggaagggtgataataagatgaagaaggcaaagagtgggaaacgaaaaagtaaaaggtttaggagaaagaagggcaagatgcagaaatctgacaagggaaagaatgttgtagggaatgctggtgatgatgtgcaagatgtttcagtgactcaagggggtgtagaagtgcccaatgttacaacagctcaatcaagcaagagagctggtaatgccagaaggcaagctggaagggttaccaaagatgttgggaaattggatttgaatgtggaattcagtaatgaggttgaagagccccctgcacctggggtaggccaaggcaatggagctggaacaggggaggatgggaacattgaagggattgagttttttgaaggtcttgatgaattcctaagcagtcttcctatactcaatgctgtgggtgatgataaggttaaggctgcctagcaaagtaaggcatttcttttgttctagttgtagcttccttttgtcttttgtatgttttagtaagggatgaaaagctactcaggcattggccttgatgttttcattgtaatgctaatgtattgctagtttgcattgaagtaattgcaataatcagcttttagctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="90624" stop="89326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90324" g_stop="89617" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E734914" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90324" e_stop="89617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCATCTGCTCCCAGAGTTTATATTGATGATTATGAGGATGTGTTTCTGGGATTATCAGAGTCGAGTGAGGAGTCAGATGAGGATTGGAAGGGTGATAATAAGATGAAGAAGGCAAAGAGTGGGAAACGAAAAAGTAAAAGGTTTAGGAGAAAGAAGGGCAAGATGCAGAAATCTGACAAGGGAAAGAATGTTGTAGGGAATGCTGGTGATGATGTGCAAGATGTTTCAGTGACTCAAGGGGGTGTAGAAGTGCCCAATGTTACAACAGCTCAATCAAGCAAGAGAGCTGGTAATGCCAGAAGGCAAGCTGGAAGGGTTACCAAAGATGTTGGGAAATTGGATTTGAATGTGGAATTCAGTAATGAGGTTGAAGAGCCCCCTGCACCTGGGGTAGGCCAAGGCAATGGAGCTGGAACAGGGGAGGATGGGAACATTGAAGGGATTGAGTTTTTTGAAGGTCTTGATGAATTCCTAAGCAGTCTTCCTATACTCAATGCTGTGGGTGATGATAAGGTTAAGGCTGCCTAGCAAAGTAAGGCATTTCTTTTGTTCTAGTTGTAGCTTCCTTTTGTCTTTTGTATGTTTTAGTAAGGGATGAAAAGCTACTCAGGCATTGGCCTTGATGTTTTCATTGTAATGCTAATGTATTGCTAGTTTGCATTGAAGTAATTGCAATAATCAGCTTTTAGCTCTAATCTCCATAC</genome_strand>
        <mrna_strand>AAAGCCATCTGCTCCCAGAGTTTATATTGATGATTATGAGGATGTGTTTCTGGGATTATCAGAGTCGAGTGAGGAGTCAGATGAGGATTGGAAGGGTGATAATAAGATGAAGAAGGCAAAGAGTGGGAAACGAAAAAGTAAAAGGTTTAGGAGAAAGAAGGGCAAGATGCAGAAATCTGACAAGGGAAAGAATGTTGTAGGGAATGCTGGTGATGATGTGCAAGATGTTTCAGTGACTCAAGGGGGTGTAGAAGTGCCCAATGTTACAACAGCTCAATCAAGCAAGAGAGCTGGTAATGCCAGAAGGCAAGCTGGAAGGGTTACCAAAGATGTTGGGAAATTGGATTTGAATGTGGAATTCAGTAATGAGGTTGAAGAGCCCCCTGCACCTGGGGTAGGCCAAGGCAATGGAGCTGGAACAGGGGAGGATGGGAACATTGAAGGGATTGAGTTTTTTGAAGGTCTTGATGAATTCCTAAGCAGTCTTCCTATACTCAATGCTGTGGGTGATGATAAGGTTAAGGCTGCCTAGCAAAGTAAGGCATTTCTTTTGTTCTAGTTGTAGCTTCCTTTTGTCTTTTGTATGTTTTAGTAAGGGATGAAAAGCTACTCAGGCATTGGCCTTGATGTTTTCATTGTAATGCTAATGTATTGCTAGTTTGCATTGAAGTAATTGCAATAATCAGCTTTTAGCTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340034" ref_strand="+" ref_description="SGN-E340034 [cTOF-3-K22]">
      <seq>aagtgcccaatgttacaacagctcaatcaagcaagagagctggtaatgccagaaggcaagctggaagggttaccaaagatgttgggaaattggatttgaatgtggaattcagtaatgaggttgaagagccccctgcacctggggtaggccaaggcaatggagctggaacaggggaggatgggaacattgaagggattgagttttttgaaggtcttgatgaattcctaagcagtcttcctatactcaatgctgtgggtgatgataaggttaaggctgcctagcaaagtaaggcatttcttttgttctagttgtagcttccttttgtcttttgtatgttttagtaagggatgaaaagctactcaggcattggccttgatgttttcattgtaatgctaatgtattgctagtttgcattgaagtaattgcaataatcagcttttagctctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="90373" stop="89326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90073" g_stop="89627" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="460"/>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E340034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90073" e_stop="89627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGCCCAATGTTACAACAGCTCAATCAAGCAAGAGAGCTGGTAATGCCAGAAGGCAAGCTGGAAGGGTTACCAAAGATGTTGGGAAATTGGATTTGAATGTGGAATTCAGTAATGAGGTTGAAGAGCCCCCTGCACCTGGGGTAGGCCAAGGCAATGGAGCTGGAACAGGGGAGGATGGGAACATTGAAGGGATTGAGTTTTTTGAAGGTCTTGATGAATTCCTAAGCAGTCTTCCTATACTCAATGCTGTGGGTGATGATAAGGTTAAGGCTGCCTAGCAAAGTAAGGCATTTCTTTTGTTCTAGTTGTAGCTTCCTTTTGTCTTTTGTATGTTTTAGTAAGGGATGAAAAGCTACTCAGGCATTGGCCTTGATGTTTTCATTGTAATGCTAATGTATTGCTAGTTTGCATTGAAGTAATTGCAATAATCAGCTTTTAGCTCTA</genome_strand>
        <mrna_strand>AAGTGCCCAATGTTACAACAGCTCAATCAAGCAAGAGAGCTGGTAATGCCAGAAGGCAAGCTGGAAGGGTTACCAAAGATGTTGGGAAATTGGATTTGAATGTGGAATTCAGTAATGAGGTTGAAGAGCCCCCTGCACCTGGGGTAGGCCAAGGCAATGGAGCTGGAACAGGGGAGGATGGGAACATTGAAGGGATTGAGTTTTTTGAAGGTCTTGATGAATTCCTAAGCAGTCTTCCTATACTCAATGCTGTGGGTGATGATAAGGTTAAGGCTGCCTAGCAAAGTAAGGCATTTCTTTTGTTCTAGTTGTAGCTTCCTTTTGTCTTTTGTATGTTTTAGTAAGGGATGAAAAGCTACTCAGGCATTGGCCTTGATGTTTTCATTGTAATGCTAATGTATTGCTAGTTTGCATTGAAGTAATTGCAATAATCAGCTTTTAGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299126" ref_strand="+" ref_description="SGN-E299126 [cLET-42-F13]">
      <seq>aaatattgcctttgtatttcttaaagatctccaaggcaatatttcgagctggactccgtttgcacccatgtttaataaacatggaggtgtaagaaagccatctgctcccagagtttatattgatgattatgaggatgtgtttctgggattatcagagtcgagtgaggagtcagatgaggattggaagggtgataataagatgaagaaggcaaagagtgggaaacgaaaaagtaaaaggtttaggagaaagaagggcaagatgcagaaatctgacaagggaaagaatgttgtagggaatgctggtgatgatgtgcaagatgtttcagtgactcaagggggtgtagaagtgcccaatgttacaacagctcaatcaagcaagagagctggcaatgccagaaggcaagctggaacggttaccaaagatgttgggaaattggatttgaatgtggaattcagtagtgaggttgaagagccccctgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="90714" stop="89635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90415" g_stop="89935" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="483" r_length="480" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E299126" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90415" e_stop="89935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTCCTTGGAGATCTTTAAGAAATACAAAGGCAATATTTCGAGCTGGACTCCGTTTGCACCCATGTTTAATAAACATGGAGGTGTAAGAAAGCCATCTGCTCCCAGAGTTTATATTGATGATTATGAGGATGTGTTTCTGGGATTATCAGAGTCGAGTGAGGAGTCAGATGAGGATTGGAAGGGTGATAATAAGATGAAGAAGGCAAAGAGTGGGAAACGAAAAAGTAAAAGGTTTAGGAGAAAGAAGGGCAAGATGCAGAAATCTGACAAGGGAAAGAATGTTGTAGGGAATGCTGGTGATGATGTGCAAGATGTTTCAGTGACTCAAGGGGGTGTAGAAGTGCCCAATGTTACAACAGCTCAATCAAGCAAGAGAGCTGGTAATGCCAGAAGGCAAGCTGGAAGGGTTACCAAAGATGTTGGGAAATTGGATTTGAATGTGGAATTCAGTAATGAGGTTGAAGAGCCCCCTGCACC</genome_strand>
        <mrna_strand>TATTGCCTTTGTATTTCTTAAAGATCT-CCAAGGCAATATTTCGAGCTGGACTCCGTTTGCACCCATGTTTAATAAACATGGAGGTGTAAGAAAGCCATCTGCTCCCAGAGTTTATATTGATGATTATGAGGATGTGTTTCTGGGATTATCAGAGTCGAGTGAGGAGTCAGATGAGGATTGGAAGGGTGATAATAAGATGAAGAAGGCAAAGAGTGGGAAACGAAAAAGTAAAAGGTTTAGGAGAAAGAAGGGCAAGATGCAGAAATCTGACAAGGGAAAGAATGTTGTAGGGAATGCTGGTGATGATGTGCAAGATGTTTCAGTGACTCAAGGGGGTGTAGAAGTGCCCAATGTTACAACAGCTCAATCAAGCAAGAGAGCTGGCAATGCCAGAAGGCAAGCTGGAACGGTTACCAAAGATGTTGGGAAATTGGATTTGAATGTGGAATTCAGTAGTGAGGTTGAAGAGCCCCCTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736519" ref_strand="+" ref_description="SGN-E736519 [LC06AD02]">
      <seq>gctacacttaatttctctctcttttctttcttcttcacttcaatttctttcttttcttggaactgaagttgaaaaactcaaaaatggaacatccattcttcatgaacggcgctggaaatacgtcgagagcggaggcgatacggtggttatcaattgccgagaagctattgactaaccgtgacctagttggaagcaaatcgtttgcgacccgtgcccatgaatccgacccgacccttttacctgccgaccaaattcttgcaatcgttgacaccctaatcgccggcgacaagcggatcaacaaccagcatcttgattattactctattcttcaaattccttccaaccaaactcatgattctgaacttatcgctaatcagtaccgacgtcttgcgctcctattgaaccctcagaagaacaatttccctttctctgaccatgcttttcatcttgtggttgatgcttggtctgttctttcaaacgcttttaggagaagtgtttatgataaagaaattgggttttttcttaaccttaaccctgtatcgtctcctccacctccgactaataacccagttggtttcatgcagcaaagttctatgatttttcagagtcaaccacagtcgcatccagtgagttctgttccgagttcttcaagcagagagcggcagactgtaacatttcttcaagacccacaaccccagccaatgacttctgtgactagcttgactagagagcagcaacctgtaacatttctgagcagaaatcaaacacagccagtaagctctactatgctaagcccggacagaaaacaacacccgtttacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="-" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="92470" stop="91048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92170" g_stop="91348" g_length="823"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="-" ref_id="SGN-E736519" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92170" e_stop="91348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACACTTAATTTCTCTCTCTTTTCTTTCTTCTTCACTTCAATTTCTTTCTTTTCTTGGAACTGAAGTTGAAAAACTCAAAAATGGAACATCCATTCTTCATGAACGGCGCTGGAAATACGTCGAGAGCGGAGGCGATACGGTGGTTATCAATTGCCGAGAAGCTATTGACTAACCGTGACCTAGTTGGAAGCAAATCGTTTGCGACCCGTGCCCATGAATCCGACCCGACCCTTTTACCTGCCGACCAAATTCTTGCAATCGTTGACACCCTAATCGCCGGCGACAAGCGGATCAACAACCAGCATCTTGATTATTACTCTATTCTTCAAATTCCTTCCAACCAAACTCATGATTCTGAACTTATCGCTAATCAGTACCGACGTCTTGCGCTCCTATTGAACCCTCAGAAGAACAATTTCCCTTTCTCTGACCATGCTTTTCATCTTGTGGTTGATGCTTGGTCTGTTCTTTCAAACGCTTTTAGGAGAAGTGTTTATGATAAAGAAATTGGGTTTTTTCTTAACCTTAACCCTGTATCGTCTCCTCCACCTCCGACTAATAACCCAGTTGGTTTCATGCAGCAAAGTTCTATGATTTTTCAGAGTCAACCACAGTCGCATCCAGTGAGTTCTGTTCCGAGTTCTTCAAGCAGAGAGCGGCAGACTGTAACATTTCTTCAAGACCCACAACCCCAGCCAATGACTTCTGTGACTAGCTTGACTAGAGAGCAGCAACCTGTAACATTTCTGAGCAGAAATCAAACACAGCCAGTAAGCTCTACTATGCTAAGCCCGGACAGAGAACAACACCCGTTTACCTT</genome_strand>
        <mrna_strand>GCTACACTTAATTTCTCTCTCTTTTCTTTCTTCTTCACTTCAATTTCTTTCTTTTCTTGGAACTGAAGTTGAAAAACTCAAAAATGGAACATCCATTCTTCATGAACGGCGCTGGAAATACGTCGAGAGCGGAGGCGATACGGTGGTTATCAATTGCCGAGAAGCTATTGACTAACCGTGACCTAGTTGGAAGCAAATCGTTTGCGACCCGTGCCCATGAATCCGACCCGACCCTTTTACCTGCCGACCAAATTCTTGCAATCGTTGACACCCTAATCGCCGGCGACAAGCGGATCAACAACCAGCATCTTGATTATTACTCTATTCTTCAAATTCCTTCCAACCAAACTCATGATTCTGAACTTATCGCTAATCAGTACCGACGTCTTGCGCTCCTATTGAACCCTCAGAAGAACAATTTCCCTTTCTCTGACCATGCTTTTCATCTTGTGGTTGATGCTTGGTCTGTTCTTTCAAACGCTTTTAGGAGAAGTGTTTATGATAAAGAAATTGGGTTTTTTCTTAACCTTAACCCTGTATCGTCTCCTCCACCTCCGACTAATAACCCAGTTGGTTTCATGCAGCAAAGTTCTATGATTTTTCAGAGTCAACCACAGTCGCATCCAGTGAGTTCTGTTCCGAGTTCTTCAAGCAGAGAGCGGCAGACTGTAACATTTCTTCAAGACCCACAACCCCAGCCAATGACTTCTGTGACTAGCTTGACTAGAGAGCAGCAACCTGTAACATTTCTGAGCAGAAATCAAACACAGCCAGTAAGCTCTACTATGCTAAGCCCGGACAGAAAACAACACCCGTTTACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691376" ref_strand="+" ref_description="SGN-E691376 [LH_Ea05P06]">
      <seq>tctttttttttctttcttcagatctcttctccatttctcgcttaatttcaggttgaagcaaggaaatggtgagacaaaaaattcagatcaggaagatagacaatttgacagcaagacaagtgacattttcaaagagaagaagagggcttttcaaaaaagctcaagagctttcaactctttgtgatgctgatattggactcattgttttctctgctactggaaaactttttgagtattcaagctccagcatgatgcaactgattgagaagcacaagatgcagtcagaaagggatagtatggataatccagaacaactgcattcttctaaccttctgagcgagaagaaaacccatgcaatgcttagcagggactttgtggagaagaatcgggagttaaggcaactacatggagaagagctgcaaggacttgggttggatgaattaatgaaattggagaaattagtcgagggaggaataagtcgtgtcctcaaaattaagggtgacaagtttatgaaagagatcagttccctcaagaaaaaggaagctaaactccaggaagagaattcactgttgaaaaagcaatcacaagcaagattgaatgaagggcaaaatgtaattgagcaaggacattcagcagactccatcaccaacaatcgcagcttagtcaatgactcagatactagtctcaagttatgcttggcttttccttagtgagctccatccatatgaaaatgggagataatatagttactcaaacaagggcgagtaattttctagtatttattatggatcataatatagtgaaatgtataaaattgattagactggttgaccaggccccgtgaaaaaacattgggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="103696" stop="112075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104016" g_stop="104057" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="51" r_length="42" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104058" i_stop="104410" i_length="353">
            <donor d_prob="0.997" d_score="0.79"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104411" g_stop="104606" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="247" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104607" i_stop="108431" i_length="3825">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108432" g_stop="108519" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="335" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108520" i_stop="109275" i_length="756">
            <donor d_prob="0.898" d_score="0.96"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109276" g_stop="109337" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="397" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109338" i_stop="109849" i_length="512">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109850" g_stop="109949" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="497" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109950" i_stop="110564" i_length="615">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110565" g_stop="110606" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="539" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="110607" i_stop="111283" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111284" g_stop="111331" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="587" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="111332" i_stop="111413" i_length="82">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111414" g_stop="111523" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="694" r_length="107" r_score="0.964"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="111524" i_stop="111609" i_length="86">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="111610" g_stop="111775" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="859" r_length="165" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E691376" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104016" e_stop="104057"/>
          <exon e_start="104411" e_stop="104606"/>
          <exon e_start="108432" e_stop="108519"/>
          <exon e_start="109276" e_stop="109337"/>
          <exon e_start="109850" e_stop="109949"/>
          <exon e_start="110565" e_stop="110606"/>
          <exon e_start="111284" e_stop="111331"/>
          <exon e_start="111414" e_stop="111523"/>
          <exon e_start="111610" e_stop="111775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACAACTTCAGATCTCTTCTCCATTTCTTGC-AAATTTCAGGTTTCTTTCCCTTAAATCTTTCTTTTATTTTTCTAGGGATAATTAATTAATTAATTATCACACCTTCTTTTCTTCTTCTATATAAATTGTTAACTAGTTCACAAGTTTCTTAATTTTTTTCTTTTTTAAAATAACTCCTTATCCATCTAGAAGAGTTACAAACATTCTGAAAATTTTTAATAAGATAATATTAAAAAAAAAAGAGAGAGAGATTCTTGTCCTGATTATAGTCAATTTTACACTGTGTTTTTTTTTGTTTTTTTGTTGAAGATCTATGCTTAAGTAATTAATGTTTGACTTTAATTTGAATCGGATCGGTGTGAACATTGATATTAATTAGTCTTCATCTATAGGTTGAAGTAAGGAAATGGTGAGACAAAAAATTCAGATCAAGAAGATAGACAATTTGACAGCAAGACAAGTGACATTTTCAAAGAGAAGAAGAGGGCTTTTCAAAAAAGCTCAAGAGCTTTCAACTCTTTGTGATGCTGATATTGGACTCATTGTTTTCTCTGCTACTGGAAAACTTTTTGAGTATTCAAGCTCCAGGTATGTTTTTCCTTTTTTTTACTCGAGAAATCAATCCAATCGATCGATCGTGGTTACGATACAATTTCAAGGACTAGTAATAATTATTCATAAAATTATAACAAAACAAACGAAATTTGTAGTACATATGATTATGGTCTAGTTTCTTTTTATTGGTTTGTTTCACTAATTAATTAAAAGTTTTTTATTTTTCATTTGGGAGTTATAAAAAGCCCATGACTTGTCTGTCAGAAAAATCTCTTACTTTTCTTGTCTGTCAGATACTTGGAGAGTTCCAAATTTTTTGGGGAAAAAAAAAGCTACAGTAAGATTGATAATGCCATATTTGGTGTGTGTGCTATTACTATAAAAGAGAGAAATAAAGTTTCTCATAAAATGTGAGTATGTTCTAAAGCAATTTGTTTATAAACTATTTAATGCTTCGATTTTATGTAATTTTTACCGTACGAGATCTTTTAGAGCTTTAATTTGTACTTGAATTTTATTTAAAATACTTCTGCATAAATTAACACATATAATCATAGGTTGAATTTTCATGACTACTTAATTTGATAAGATATATATGTCGTTAGAACAGCAAAAGCAGCATAGTTTTGTTTTGATTAATGTATGACATAATCTAAAAAAATTCTCTTAGATTACTCGTGTACCAACGGTGATAAGTTTTTAACTAGTGTCATTGTATGTAGATGATAATTCAAGTGTCAGACAATATTGTGTGTTTGGTACGAAAGATAATATTTTTTTATGAAAAATATTTTCTTGAAAAATAAGTAATTTTTTAAACTTATTTCTAGTGTTTGTTAAGTAAGTAAAAAAATGTTCTCTCAAAAGCATTTATAACTAATTTAGCAAAATCCTGTAGAGGTGAGGAGTGGGGCCTCGAGGATGTCGGGGGTGGGATGGTCAAGGGATAGGGGTTCGGGGCTTTGGGTGAGAGAGGAGGATATACAATGAAACATATAATGTCATTTATCAAATTATTTTTCATACTTCCATTTAAGAAAATCATTTTCCTCATTTTAAAAAACTTTATTACTGAATATGTATTCCAAAATTTTTGTTCAACTAAACATGGAAAAATACAAAATATTTTCTTCCATACCAAACACTTAATGTCAATTTCAAAAGGATGTTTGGTTTGTTAGGCATCTTGTGTTGATCAGTACTGATTTCCTCTCTTGGATTTGCCTGTCTTACTACAATTTTCTTAGCAGGTGGTTCATGTTTAATCCATTGGGATAGACTAATTTGGGCTGATGACACTTTGTAACGACTTAGCATGTCTGTAAAAGTAGTGAATTTATGTTATGGCTGCCCTCCGACTTTCCACAATCTTTTCTGAGTTGTTCAAATTGATTGAATCTTTATCAATTTAGTTAGAATAAAATTATTGATACATAGTATAGACTAAGTTAACTCATACTTGAAATCTTTACCGAGCTATATACCTATAATCATATAAGCAAAATAAACATATTTCTTAGCTTAATATTCGAAAACAATAGTATTTATTAGCTCAAAGATACTAAAAACATGCTTATTTATGACAATGTGATTCTTAGCGTAATATCGTAAAAACAATAGAATTAGCTCAAAGAATACTTAAAAACATGCTACCTTTAATAAGAAGCTTAAAACATGAAGCTCATTTTTAATTACCTCCTTCATATTTGACTTATTGAACTTTTTCTTCCCTTTCCTCAGTTTTAGTGACTCCTAATTAATAAGTTGAACATCAACAAGATCCATGATGTGCAAACTAATACTAAATAGAAGTAATATAAGAAAGGAGGACATATATCTTAACCTCCGCAACCAGATGAAGAATGATGTGAATTGGTACCTTTGACATATAGTGAGCAAAGAATAGACCTAGCGGCTAGCACTACATAAAAAATATCATTAGTGACAATTAATTAACAACAATAGATTAATTACCATTAGCGACAATTAATATCTAAAACCTTTAGTGATATTGATTCTAACACTTAACTAATGTCTGTACAGATTTTAATACTCTTTATTGATTTCTATATTTATTGTAGCTAAAAATAATTTATATGATAGGATAAGTAGCATCTCAAAGACTCCTTGGGAGTTCAAATTTTTTTGTATAAAAGGATTAATTAAATTAACAATAGATTATATGAAGGAAGTAAATCATATAATCAACAACTGAAGAATTTACTTTACTCTCTCTATATATAGTGGAGTTAAATCTACTTAACAAAGAGAAAGTAAATATTAGAAGAAAATGACTCCCCAAATCTTGAATTTAATTTGTTCCTAGATATCTTGATATTTTGTGAAGGTTTTTTCACATCTTATTCTTTGCCTCCATGGTGTGTCACCAAAATAATTCCACCCATCTCACCATGAAATTATTCATTCTTTTTTTTGAATTTCAAAATCAACGTTGATAAAATTTACAAATTCAATTTTTAATTTGAAAAAAAATGCTCCAAACATGTTTCCCTCTCTAATATGAACTTTTATATATTTGAAATCTATGATCAAATGCGTACGATAAATTCTATTTACAAGCCCCACCCAAAAATCCCTTGAAGTGCGTCCACTAAAGCAGAAAATTCGATTTTGGTGCTGCACAACTGAAAACTAGCTATGAAGTGTCATTTGCTGTCTGGGAATAATTTTCTAGTGTTTTTTACTGTATGTCCAGAGCTATTTATTATCCCTCCAAATATAATAGTGTTCCTTTTCTTCTATTATCCATATTTTGCGTGCCATAAAAAAAAATTCAAAGATAAAGTGGATATATATTCTAACCATTTGATCAAGTAAAGGAAATATTTATTCCAAAAATACATATAACTAATATCGGCTCATAATTCATAACACACATTTTCACCTTAATTCGATGGTGATGGAGCGTTTTACGTTGAACTCTACAACTCCTTAATACTTCTTTGAGCTGCCTCTACCTCTCTTTATTTTCACTATACCTAAAATCTCACACCTCCTCATTAATGAGACATTTATGCATCTCCGATCGTTTTCATATTTCTGAACCAACTCAGTCTTGCTTCTCTCGTCGAGTTACTCCCATCTAGTTCCATGTATCTGTGCTTTTAATCCTATATCTCCTTATATATCCACACTCAATCTCAACATTCTCAATTTTGCTACTTTCAGTTTGACCACCACTTTAAGACTCAAACTTTTGTTTCTTTAGAAATTTATAATTGATCTGTTAAGCTAATGTGCAAAAGATGATTGGAGTATTGTACTAGATAACAAATGAAAAAAACTTTTAAATATAGATTTGACATGCTTCAAAGGAGCTGAATATTAAGGACAAAAAACAAAACAAATGGTAAATTTTTAAATATAATTTTTTCAATAGTTGTCTATTTATATTCTCTTTATCCCATGACATTATTCGGCTTACACAACTTGTAAAAGTGAAATATTCTCCAACAGAAGGGGTGTGAGAGTAGAGTTCTAAACTATAGGCTCGTTTCATATGAGAGACAAATATAGATAGTTTCACGAGAAAAATTTAGTACTGTCTTATATCTTGTTTAGTTATATTAATCTTCGAATAAATTATGTCAAGATCAATAAATTAGTATGAAGATAAGTTAATTACTATAAACAGTTAATTAACTACACTAATAAAATTACAAAATTTTGAGGATCAAGAAAACCAAACATGGCCATATTCAATTTTTATGTGATTTTGTAAATTTTGGTTAGGGAAACTAGCAATTATGCTATAAGTTTTTTCACATCGTTGATCAATGAAGGCTGAGTGTTATTTATGTTGAAGCTTGTTTCATTATTTATGTATCGTTTACACAGCATGATGCAACTGATTGAGAAGCACAAGATGCAGTCAGAAAGGGATGGTATGGATAATCCAGAACAACTGCATTCTTCTAACATTCTGGTAAATTATGTATATTGTTAAGTCTCTGAGGTCATCATAAATTTAATGGCAATGATATTATATTATGAACAGTTAATACGTGATCATGAAGTGTATAAATTTTTAATTTTTTTTTGAAAATTGGGGATACGGGGAGGGGATTATAAGGTGGGGAATTGAATCTTCACCAACAAGGTTGAAGTTTATATAGCCATCCAACTAAGCTGCTAAGATATCCCGCTGAAGTGTACAAATTATTTGGCCTAACTTAGATTTTGGGAAGTGTTCTTTTTTCTTCATAAGTTAGGCTAATTTTGTTGGGCTAATACTAGAATGTACTTGTAATGTTTCAAATGTGCTTCCCTGAAAAAAACTACACTTAGTTATTTTTCCTTGAAAGCTTAAAAAGTATCTTCTTTTTTTTATAGCAAATTTATCAGTAGACAAAGTTTAGTGGCCTTTTGTTAAACATGAACAAAAAAAAAACTATCAATAGGGATATGTACAAATAAGAGGGCTAGACCTTACCTTACTAATCTTAATGAAGTACCTAACTTCTGCTACCTAAAAAGCATGAAGAAAATAATAGCTTTAGAGAGAACTAAATATTTTTTTTATCTCCACAGAATTTGTATGCTTAAATAATATGTCAACCAAATATATCAACTTTTCGAAATAAGCATTATTTTTTAATTCATAAAAATTTGACCAAACAAACTATGATCATTTCAATTCCCATCTAACTTAGTAAACACAAGCAAATATTTCATTTTCCAGAGCGAGAAGAAAACCCATGCAATGCTTAACAGGGACTTTGTGGAGAAGAATCGGGAGTTAAGGTAATTGTTGGTTTTATTTGAAGCATGATTCATAATTTAATGTGCCTATTATTGTAAAGTCTGTAATTAAAGATGTATCCAATTTTTTGTTGGACAGATTATAGATGCAATTTTAATCTATAAAATACTTTCTTCATCCATCTTTATTTGTTCATTCTATTATTTTGGAATGTCCAACAATACTTGTCCAGTTTATAAAATCGATAAATAGTTTACCAAGTTATGTCTATTTTATCCTTACTATTATATTTAGATGGCTTATATTTAGTAAGGGTGATTTGGTAAAAATATCTATATCATTTATGCTTCTTAAATCACTAAGAGAAATTGATAATAATGAGCAACTATTGTTGGACAAATGACATTATACATATTATTTATGTTCTACAATTAGAGATACCCTTCATTGTTAATTGTTGCATCTCATTATACATATCTTGGTGCTGCAAAAGTTTGCCTAATTGTAGTAATAATTACTTTCAAATTTCAACTTATATGACTTATTATGCTAGGCAACTACATGGAGAAGAGCTGCAAGGACTTGGTTTGGATGAATTAATGAAATTGGAGAAATTAGTCGAGGGAGGAATAAGTCGTGTCCTCAAAATTAAGGTCCTATTTACTTAATTCCCTTCTTCCTATTTTAAAATTGCTTAGTCTTCGTCTCTTATTCTTCAATGTGTATTATTATATATTTTTGTATTTGCTTTTATATCTTTTGCTGTTGTATTTTCTTGGAATCATGCTTCAAAAAATATTTCTTTGAGCTGAGAGTCTATATCGCAAATAGTCTCTCTATCCCTCAAAGATAAAAGTATTGTTCGCATATATTTTACTCTTTTTGTACCTCACTTGTAAAATTACACCAGATATGTTGTTGTTTTCTACTTAATTTCCCTCCTCATTTGCACTTGTGTGATTAATACTCCCTTTCCTTATTAGTTGATCATTATACTAAATGTAATTGTCTCGTATTAGTTGATCACCTTAGTAAATCCAAAAACATCTTTTTTTATATTATTCATGCAATTCATTTTTTTTAAAGTGTTCATAATTGTGTATAAATTTCTCAAATAGTTTTTTAAAGGATTAATTAGTATAATTACCTTCTTATTTATAATTTCTTAAGCGTTGTGCAAAATGAAAAGTAAACAACTAATATGAGATCGAAAGGAGTATATAATTGGTCCTACAACATGCATTGATTCCATTAACTTGCGTTTTCAGGGTGACAAGTTTATGAAAGAGATCAGTTCCCTCAAGAAAAAGGCAAGTCATGCATTAACTGATTGAATGTTGATTTCTCAGTACAACTTTCTTTTACTTAATTAGGAAATACTATTTGATTCTTCAGCAACTTAAGTTGACAGGAATTCCAATGTGGTTTTTGGAAGACAATTATAGGGAAAAATATGTCCAGATTATGTATAATATGGAGAATTAAGTTCTTGAGTACTTTTGGGATATGCATAAGTACCCCATCAAAATTTCAGTGATACCTAAATTTAATAGGTTTCTATTATTCCAAACTCATTTTTAAAAATATTTTCATGCACCTTTTATATTCACTGTGACACCTTCAACCAACTAAATAGATTATGTTTGTACAGCACGAGCATGCCAGGTGAAAAAACCACTTAGTTTAACAATTTTAGTCTGTTCTGTTCTTACCCTTCAAAAATAATGTCATATTTTCTCTTGCCGTTCGAACAAGATAACAAGGGACGTTAAGGTGACGTGGTAGAGGTGATACCCATCACGTGTGTCAAAGGAGATGGCGGTTGATTAATTGCTTCAAGCATTGGATAAGTGATGTTTATGTGTCAATACCCTTCAATTTTTGTCTTAGGGTTTAAAGTGATTTAAAAATAATTTTGATCAACCACTAGAAAAGGATATATATAATAATATTTCATGGCATCTTATAAGTAGCTCTCAATATGCAGGAAGCTAAACTCCAGGAAGAGAATTCACAGTTGAAAAAGCAATCACAAGTAAATTATTCTGCAATTAATTGTATTTTTGGCATAATTTGTTTAATGAATTACTCCCTAAGTCACATTAATTCATGAGCAGGCAAGATTGAATGAAGAAGGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACGAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATGGTACGTATCCAAATCCTAAACTCTGAACCCTAAATCCTAACATTTTTCACGTCTAATTTGTTATTTATACACGTTTATCTTTGCAGCTTGGCTTTTCCTTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTCTAATATTTATTATGGATCATAATATAGTGAAATGTATAAAATTGATTAGATTGGTTGATCAGGCTCCGTTAAAAAAACATTGGGACC</genome_strand>
        <mrna_strand>TTC-TTTCTTCAGATCTCTTCTCCATTTCTCGCTTAATTTCAG.................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAGGAAATGGTGAGACAAAAAATTCAGATCAGGAAGATAGACAATTTGACAGCAAGACAAGTGACATTTTCAAAGAGAAGAAGAGGGCTTTTCAAAAAAGCTCAAGAGCTTTCAACTCTTTGTGATGCTGATATTGGACTCATTGTTTTCTCTGCTACTGGAAAACTTTTTGAGTATTCAAGCTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCAACTGATTGAGAAGCACAAGATGCAGTCAGAAAGGGATAGTATGGATAATCCAGAACAACTGCATTCTTCTAACCTTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAAGAAAACCCATGCAATGCTTAGCAGGGACTTTGTGGAGAAGAATCGGGAGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTACATGGAGAAGAGCTGCAAGGACTTGGGTTGGATGAATTAATGAAATTGGAGAAATTAGTCGAGGGAGGAATAAGTCGTGTCCTCAAAATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAGTTTATGAAAGAGATCAGTTCCCTCAAGAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTAAACTCCAGGAAGAGAATTCACTGTTGAAAAAGCAATCACAA..................................................................................GCAAGATTGAAT---GAAGGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACCAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATG......................................................................................CTTGGCTTTTCCTTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTCTAGTATTTATTATGGATCATAATATAGTGAAATGTATAAAATTGATTAGACTGGTTGACCAGGCCCCG-TGAAAAAACATTGGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691380" ref_strand="+" ref_description="SGN-E691380 [LH_Ea05P10]">
      <seq>ccgttttgttttttctttcttcagatctcttctccatttcttgcaaatttcaggttgaagcaaggaaatggtgagacaaaaaattcagatcaggaagatagacaatttgacagcaagacaagtgacattttcaaagagaagaagagggcttttcaaaaaagctcaagagctttcaactctttgtgatgctgatattggactcattgttttctctgctactggaaaactttttgagtattcaagctccagcatgatgcaactgattgagaagcacaagatgcagtcagaaagggatagtatggataatccagaacaactgcattcttctaaccttctgagcgagaagaaaacccatgcaatgcttaccagggactttgtggagaagaatcgggagttaaggcaactacatggagaagagctgcaaggacttgggttggatgaattaatgaaattggagaaattagtcgagggaggaataagtcgtgtcctcaaaattaagggtgacaagtttatgaaagagatcagttccctcaagaaaaaggaagctaaactccaggaagagaattcactgttgaaaaagcaatcacaagcaagattgaatgaagggcaaaatgtaattgagcaaggacattcagcagactccatcaccaacaatcgcagcttagtcaatgactcagatactagtctcaagttatgcttggcttttccttagtgagctccatccatatgaaaatgggagataatatagttactcaaacaagggcgagtaattttctagtatttattatggatcataatatagtgaaatgtataaaattgattagactggttgaccaggccccgtgaaaaaacattgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="103723" stop="112074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104016" g_stop="104057" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="53" r_length="41" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104058" i_stop="104410" i_length="353">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104411" g_stop="104606" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="249" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104607" i_stop="108431" i_length="3825">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108432" g_stop="108519" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="337" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108520" i_stop="109275" i_length="756">
            <donor d_prob="0.898" d_score="0.96"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109276" g_stop="109337" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="399" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109338" i_stop="109849" i_length="512">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109850" g_stop="109949" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="499" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109950" i_stop="110564" i_length="615">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110565" g_stop="110606" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="541" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="110607" i_stop="111283" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111284" g_stop="111331" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="589" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="111332" i_stop="111413" i_length="82">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111414" g_stop="111523" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="696" r_length="107" r_score="0.964"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="111524" i_stop="111609" i_length="86">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="111610" g_stop="111774" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="860" r_length="164" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E691380" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104016" e_stop="104057"/>
          <exon e_start="104411" e_stop="104606"/>
          <exon e_start="108432" e_stop="108519"/>
          <exon e_start="109276" e_stop="109337"/>
          <exon e_start="109850" e_stop="109949"/>
          <exon e_start="110565" e_stop="110606"/>
          <exon e_start="111284" e_stop="111331"/>
          <exon e_start="111414" e_stop="111523"/>
          <exon e_start="111610" e_stop="111774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACAACTTCAGATCTCTTCTCCATTTCTTGCAAATTTCAGGTTTCTTTCCCTTAAATCTTTCTTTTATTTTTCTAGGGATAATTAATTAATTAATTATCACACCTTCTTTTCTTCTTCTATATAAATTGTTAACTAGTTCACAAGTTTCTTAATTTTTTTCTTTTTTAAAATAACTCCTTATCCATCTAGAAGAGTTACAAACATTCTGAAAATTTTTAATAAGATAATATTAAAAAAAAAAGAGAGAGAGATTCTTGTCCTGATTATAGTCAATTTTACACTGTGTTTTTTTTTGTTTTTTTGTTGAAGATCTATGCTTAAGTAATTAATGTTTGACTTTAATTTGAATCGGATCGGTGTGAACATTGATATTAATTAGTCTTCATCTATAGGTTGAAGTAAGGAAATGGTGAGACAAAAAATTCAGATCAAGAAGATAGACAATTTGACAGCAAGACAAGTGACATTTTCAAAGAGAAGAAGAGGGCTTTTCAAAAAAGCTCAAGAGCTTTCAACTCTTTGTGATGCTGATATTGGACTCATTGTTTTCTCTGCTACTGGAAAACTTTTTGAGTATTCAAGCTCCAGGTATGTTTTTCCTTTTTTTTACTCGAGAAATCAATCCAATCGATCGATCGTGGTTACGATACAATTTCAAGGACTAGTAATAATTATTCATAAAATTATAACAAAACAAACGAAATTTGTAGTACATATGATTATGGTCTAGTTTCTTTTTATTGGTTTGTTTCACTAATTAATTAAAAGTTTTTTATTTTTCATTTGGGAGTTATAAAAAGCCCATGACTTGTCTGTCAGAAAAATCTCTTACTTTTCTTGTCTGTCAGATACTTGGAGAGTTCCAAATTTTTTGGGGAAAAAAAAAGCTACAGTAAGATTGATAATGCCATATTTGGTGTGTGTGCTATTACTATAAAAGAGAGAAATAAAGTTTCTCATAAAATGTGAGTATGTTCTAAAGCAATTTGTTTATAAACTATTTAATGCTTCGATTTTATGTAATTTTTACCGTACGAGATCTTTTAGAGCTTTAATTTGTACTTGAATTTTATTTAAAATACTTCTGCATAAATTAACACATATAATCATAGGTTGAATTTTCATGACTACTTAATTTGATAAGATATATATGTCGTTAGAACAGCAAAAGCAGCATAGTTTTGTTTTGATTAATGTATGACATAATCTAAAAAAATTCTCTTAGATTACTCGTGTACCAACGGTGATAAGTTTTTAACTAGTGTCATTGTATGTAGATGATAATTCAAGTGTCAGACAATATTGTGTGTTTGGTACGAAAGATAATATTTTTTTATGAAAAATATTTTCTTGAAAAATAAGTAATTTTTTAAACTTATTTCTAGTGTTTGTTAAGTAAGTAAAAAAATGTTCTCTCAAAAGCATTTATAACTAATTTAGCAAAATCCTGTAGAGGTGAGGAGTGGGGCCTCGAGGATGTCGGGGGTGGGATGGTCAAGGGATAGGGGTTCGGGGCTTTGGGTGAGAGAGGAGGATATACAATGAAACATATAATGTCATTTATCAAATTATTTTTCATACTTCCATTTAAGAAAATCATTTTCCTCATTTTAAAAAACTTTATTACTGAATATGTATTCCAAAATTTTTGTTCAACTAAACATGGAAAAATACAAAATATTTTCTTCCATACCAAACACTTAATGTCAATTTCAAAAGGATGTTTGGTTTGTTAGGCATCTTGTGTTGATCAGTACTGATTTCCTCTCTTGGATTTGCCTGTCTTACTACAATTTTCTTAGCAGGTGGTTCATGTTTAATCCATTGGGATAGACTAATTTGGGCTGATGACACTTTGTAACGACTTAGCATGTCTGTAAAAGTAGTGAATTTATGTTATGGCTGCCCTCCGACTTTCCACAATCTTTTCTGAGTTGTTCAAATTGATTGAATCTTTATCAATTTAGTTAGAATAAAATTATTGATACATAGTATAGACTAAGTTAACTCATACTTGAAATCTTTACCGAGCTATATACCTATAATCATATAAGCAAAATAAACATATTTCTTAGCTTAATATTCGAAAACAATAGTATTTATTAGCTCAAAGATACTAAAAACATGCTTATTTATGACAATGTGATTCTTAGCGTAATATCGTAAAAACAATAGAATTAGCTCAAAGAATACTTAAAAACATGCTACCTTTAATAAGAAGCTTAAAACATGAAGCTCATTTTTAATTACCTCCTTCATATTTGACTTATTGAACTTTTTCTTCCCTTTCCTCAGTTTTAGTGACTCCTAATTAATAAGTTGAACATCAACAAGATCCATGATGTGCAAACTAATACTAAATAGAAGTAATATAAGAAAGGAGGACATATATCTTAACCTCCGCAACCAGATGAAGAATGATGTGAATTGGTACCTTTGACATATAGTGAGCAAAGAATAGACCTAGCGGCTAGCACTACATAAAAAATATCATTAGTGACAATTAATTAACAACAATAGATTAATTACCATTAGCGACAATTAATATCTAAAACCTTTAGTGATATTGATTCTAACACTTAACTAATGTCTGTACAGATTTTAATACTCTTTATTGATTTCTATATTTATTGTAGCTAAAAATAATTTATATGATAGGATAAGTAGCATCTCAAAGACTCCTTGGGAGTTCAAATTTTTTTGTATAAAAGGATTAATTAAATTAACAATAGATTATATGAAGGAAGTAAATCATATAATCAACAACTGAAGAATTTACTTTACTCTCTCTATATATAGTGGAGTTAAATCTACTTAACAAAGAGAAAGTAAATATTAGAAGAAAATGACTCCCCAAATCTTGAATTTAATTTGTTCCTAGATATCTTGATATTTTGTGAAGGTTTTTTCACATCTTATTCTTTGCCTCCATGGTGTGTCACCAAAATAATTCCACCCATCTCACCATGAAATTATTCATTCTTTTTTTTGAATTTCAAAATCAACGTTGATAAAATTTACAAATTCAATTTTTAATTTGAAAAAAAATGCTCCAAACATGTTTCCCTCTCTAATATGAACTTTTATATATTTGAAATCTATGATCAAATGCGTACGATAAATTCTATTTACAAGCCCCACCCAAAAATCCCTTGAAGTGCGTCCACTAAAGCAGAAAATTCGATTTTGGTGCTGCACAACTGAAAACTAGCTATGAAGTGTCATTTGCTGTCTGGGAATAATTTTCTAGTGTTTTTTACTGTATGTCCAGAGCTATTTATTATCCCTCCAAATATAATAGTGTTCCTTTTCTTCTATTATCCATATTTTGCGTGCCATAAAAAAAAATTCAAAGATAAAGTGGATATATATTCTAACCATTTGATCAAGTAAAGGAAATATTTATTCCAAAAATACATATAACTAATATCGGCTCATAATTCATAACACACATTTTCACCTTAATTCGATGGTGATGGAGCGTTTTACGTTGAACTCTACAACTCCTTAATACTTCTTTGAGCTGCCTCTACCTCTCTTTATTTTCACTATACCTAAAATCTCACACCTCCTCATTAATGAGACATTTATGCATCTCCGATCGTTTTCATATTTCTGAACCAACTCAGTCTTGCTTCTCTCGTCGAGTTACTCCCATCTAGTTCCATGTATCTGTGCTTTTAATCCTATATCTCCTTATATATCCACACTCAATCTCAACATTCTCAATTTTGCTACTTTCAGTTTGACCACCACTTTAAGACTCAAACTTTTGTTTCTTTAGAAATTTATAATTGATCTGTTAAGCTAATGTGCAAAAGATGATTGGAGTATTGTACTAGATAACAAATGAAAAAAACTTTTAAATATAGATTTGACATGCTTCAAAGGAGCTGAATATTAAGGACAAAAAACAAAACAAATGGTAAATTTTTAAATATAATTTTTTCAATAGTTGTCTATTTATATTCTCTTTATCCCATGACATTATTCGGCTTACACAACTTGTAAAAGTGAAATATTCTCCAACAGAAGGGGTGTGAGAGTAGAGTTCTAAACTATAGGCTCGTTTCATATGAGAGACAAATATAGATAGTTTCACGAGAAAAATTTAGTACTGTCTTATATCTTGTTTAGTTATATTAATCTTCGAATAAATTATGTCAAGATCAATAAATTAGTATGAAGATAAGTTAATTACTATAAACAGTTAATTAACTACACTAATAAAATTACAAAATTTTGAGGATCAAGAAAACCAAACATGGCCATATTCAATTTTTATGTGATTTTGTAAATTTTGGTTAGGGAAACTAGCAATTATGCTATAAGTTTTTTCACATCGTTGATCAATGAAGGCTGAGTGTTATTTATGTTGAAGCTTGTTTCATTATTTATGTATCGTTTACACAGCATGATGCAACTGATTGAGAAGCACAAGATGCAGTCAGAAAGGGATGGTATGGATAATCCAGAACAACTGCATTCTTCTAACATTCTGGTAAATTATGTATATTGTTAAGTCTCTGAGGTCATCATAAATTTAATGGCAATGATATTATATTATGAACAGTTAATACGTGATCATGAAGTGTATAAATTTTTAATTTTTTTTTGAAAATTGGGGATACGGGGAGGGGATTATAAGGTGGGGAATTGAATCTTCACCAACAAGGTTGAAGTTTATATAGCCATCCAACTAAGCTGCTAAGATATCCCGCTGAAGTGTACAAATTATTTGGCCTAACTTAGATTTTGGGAAGTGTTCTTTTTTCTTCATAAGTTAGGCTAATTTTGTTGGGCTAATACTAGAATGTACTTGTAATGTTTCAAATGTGCTTCCCTGAAAAAAACTACACTTAGTTATTTTTCCTTGAAAGCTTAAAAAGTATCTTCTTTTTTTTATAGCAAATTTATCAGTAGACAAAGTTTAGTGGCCTTTTGTTAAACATGAACAAAAAAAAAACTATCAATAGGGATATGTACAAATAAGAGGGCTAGACCTTACCTTACTAATCTTAATGAAGTACCTAACTTCTGCTACCTAAAAAGCATGAAGAAAATAATAGCTTTAGAGAGAACTAAATATTTTTTTTATCTCCACAGAATTTGTATGCTTAAATAATATGTCAACCAAATATATCAACTTTTCGAAATAAGCATTATTTTTTAATTCATAAAAATTTGACCAAACAAACTATGATCATTTCAATTCCCATCTAACTTAGTAAACACAAGCAAATATTTCATTTTCCAGAGCGAGAAGAAAACCCATGCAATGCTTAACAGGGACTTTGTGGAGAAGAATCGGGAGTTAAGGTAATTGTTGGTTTTATTTGAAGCATGATTCATAATTTAATGTGCCTATTATTGTAAAGTCTGTAATTAAAGATGTATCCAATTTTTTGTTGGACAGATTATAGATGCAATTTTAATCTATAAAATACTTTCTTCATCCATCTTTATTTGTTCATTCTATTATTTTGGAATGTCCAACAATACTTGTCCAGTTTATAAAATCGATAAATAGTTTACCAAGTTATGTCTATTTTATCCTTACTATTATATTTAGATGGCTTATATTTAGTAAGGGTGATTTGGTAAAAATATCTATATCATTTATGCTTCTTAAATCACTAAGAGAAATTGATAATAATGAGCAACTATTGTTGGACAAATGACATTATACATATTATTTATGTTCTACAATTAGAGATACCCTTCATTGTTAATTGTTGCATCTCATTATACATATCTTGGTGCTGCAAAAGTTTGCCTAATTGTAGTAATAATTACTTTCAAATTTCAACTTATATGACTTATTATGCTAGGCAACTACATGGAGAAGAGCTGCAAGGACTTGGTTTGGATGAATTAATGAAATTGGAGAAATTAGTCGAGGGAGGAATAAGTCGTGTCCTCAAAATTAAGGTCCTATTTACTTAATTCCCTTCTTCCTATTTTAAAATTGCTTAGTCTTCGTCTCTTATTCTTCAATGTGTATTATTATATATTTTTGTATTTGCTTTTATATCTTTTGCTGTTGTATTTTCTTGGAATCATGCTTCAAAAAATATTTCTTTGAGCTGAGAGTCTATATCGCAAATAGTCTCTCTATCCCTCAAAGATAAAAGTATTGTTCGCATATATTTTACTCTTTTTGTACCTCACTTGTAAAATTACACCAGATATGTTGTTGTTTTCTACTTAATTTCCCTCCTCATTTGCACTTGTGTGATTAATACTCCCTTTCCTTATTAGTTGATCATTATACTAAATGTAATTGTCTCGTATTAGTTGATCACCTTAGTAAATCCAAAAACATCTTTTTTTATATTATTCATGCAATTCATTTTTTTTAAAGTGTTCATAATTGTGTATAAATTTCTCAAATAGTTTTTTAAAGGATTAATTAGTATAATTACCTTCTTATTTATAATTTCTTAAGCGTTGTGCAAAATGAAAAGTAAACAACTAATATGAGATCGAAAGGAGTATATAATTGGTCCTACAACATGCATTGATTCCATTAACTTGCGTTTTCAGGGTGACAAGTTTATGAAAGAGATCAGTTCCCTCAAGAAAAAGGCAAGTCATGCATTAACTGATTGAATGTTGATTTCTCAGTACAACTTTCTTTTACTTAATTAGGAAATACTATTTGATTCTTCAGCAACTTAAGTTGACAGGAATTCCAATGTGGTTTTTGGAAGACAATTATAGGGAAAAATATGTCCAGATTATGTATAATATGGAGAATTAAGTTCTTGAGTACTTTTGGGATATGCATAAGTACCCCATCAAAATTTCAGTGATACCTAAATTTAATAGGTTTCTATTATTCCAAACTCATTTTTAAAAATATTTTCATGCACCTTTTATATTCACTGTGACACCTTCAACCAACTAAATAGATTATGTTTGTACAGCACGAGCATGCCAGGTGAAAAAACCACTTAGTTTAACAATTTTAGTCTGTTCTGTTCTTACCCTTCAAAAATAATGTCATATTTTCTCTTGCCGTTCGAACAAGATAACAAGGGACGTTAAGGTGACGTGGTAGAGGTGATACCCATCACGTGTGTCAAAGGAGATGGCGGTTGATTAATTGCTTCAAGCATTGGATAAGTGATGTTTATGTGTCAATACCCTTCAATTTTTGTCTTAGGGTTTAAAGTGATTTAAAAATAATTTTGATCAACCACTAGAAAAGGATATATATAATAATATTTCATGGCATCTTATAAGTAGCTCTCAATATGCAGGAAGCTAAACTCCAGGAAGAGAATTCACAGTTGAAAAAGCAATCACAAGTAAATTATTCTGCAATTAATTGTATTTTTGGCATAATTTGTTTAATGAATTACTCCCTAAGTCACATTAATTCATGAGCAGGCAAGATTGAATGAAGAAGGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACGAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATGGTACGTATCCAAATCCTAAACTCTGAACCCTAAATCCTAACATTTTTCACGTCTAATTTGTTATTTATACACGTTTATCTTTGCAGCTTGGCTTTTCCTTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTCTAATATTTATTATGGATCATAATATAGTGAAATGTATAAAATTGATTAGATTGGTTGATCAGGCTCCGTTAAAAAAACATTGGGAC</genome_strand>
        <mrna_strand>TTC-TTTCTTCAGATCTCTTCTCCATTTCTTGCAAATTTCAG.................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCAAGGAAATGGTGAGACAAAAAATTCAGATCAGGAAGATAGACAATTTGACAGCAAGACAAGTGACATTTTCAAAGAGAAGAAGAGGGCTTTTCAAAAAAGCTCAAGAGCTTTCAACTCTTTGTGATGCTGATATTGGACTCATTGTTTTCTCTGCTACTGGAAAACTTTTTGAGTATTCAAGCTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCAACTGATTGAGAAGCACAAGATGCAGTCAGAAAGGGATAGTATGGATAATCCAGAACAACTGCATTCTTCTAACCTTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAAGAAAACCCATGCAATGCTTACCAGGGACTTTGTGGAGAAGAATCGGGAGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTACATGGAGAAGAGCTGCAAGGACTTGGGTTGGATGAATTAATGAAATTGGAGAAATTAGTCGAGGGAGGAATAAGTCGTGTCCTCAAAATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAGTTTATGAAAGAGATCAGTTCCCTCAAGAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTAAACTCCAGGAAGAGAATTCACTGTTGAAAAAGCAATCACAA..................................................................................GCAAGATTGAAT---GAAGGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACCAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATG......................................................................................CTTGGCTTTTCCTTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTCTAGTATTTATTATGGATCATAATATAGTGAAATGTATAAAATTGATTAGACTGGTTGACCAGGCCCCG-TGAAAAAACATTGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690864" ref_strand="+" ref_description="SGN-E690864 [LH_Ea04J22]">
      <seq>tcattctaagaagcaaggaaatggtgagacaaaaaattcagacctggaagatagacaatttgacagcaagacaagtgacattttcaaagagaagaagagggcttttcaaaaaagctcaagagctttcaactctttgtgatgctgatattggactcattgttttctctgctactggaaaactttttgagtattcaagctccagcatgatgcaactgattgagaagcacaagatgcagtcagaaagggatagtatggataatccagaacaactgcattcttctaaccttctgagcgagaagaaaacccatgcaatgcttagcagggactttgtggagaagaatcgggagttaaggcaactacatggagaagagctgcaaggacttgggttggatgaattaatgaaattggagaaattagtcgagggaggaataagtcgtgtcctcaaaattaagggtgacaagtttatgaaagagatcagttccctcaagaaaaaggaagctaaactccaggaagagaattcactgttgaaaaagcaatcacaagcaagattgaatgaagggcaaaatgtaattgagcaaggacattcagcagactccatcaccaacaatcgcagcttagtcaatgactcagatactagtctcaagttatgcttggcttttccttagtgagctccatccatatgaaaatgggagataatatagttactcaaacaagggcgagtaattttctagtatttattatggatcataatatagtgaaatgtataaaattgattagactggttgaccaggccccgtgaaaaaacattgggaccatagagttcattgggattcgaagggtcaacggtctaatcagagagtcatgtgatatttagctaggtgctatgtattaatctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="104114" stop="112160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104411" g_stop="104606" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="202" r_length="196" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104607" i_stop="108431" i_length="3825">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108432" g_stop="108519" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="290" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108520" i_stop="109275" i_length="756">
            <donor d_prob="0.898" d_score="0.96"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109276" g_stop="109337" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="352" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109338" i_stop="109849" i_length="512">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109850" g_stop="109949" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="452" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109950" i_stop="110564" i_length="615">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110565" g_stop="110606" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="494" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110607" i_stop="111283" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111284" g_stop="111331" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="542" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="111332" i_stop="111413" i_length="82">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111414" g_stop="111523" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="649" r_length="107" r_score="0.964"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="111524" i_stop="111609" i_length="86">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111610" g_stop="111860" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="899" r_length="250" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E690864" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104411" e_stop="104606"/>
          <exon e_start="108432" e_stop="108519"/>
          <exon e_start="109276" e_stop="109337"/>
          <exon e_start="109850" e_stop="109949"/>
          <exon e_start="110565" e_stop="110606"/>
          <exon e_start="111284" e_stop="111331"/>
          <exon e_start="111414" e_stop="111523"/>
          <exon e_start="111610" e_stop="111860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGTAAGGAAATGGTGAGACAAAAAATTCAGATCAAGAAGATAGACAATTTGACAGCAAGACAAGTGACATTTTCAAAGAGAAGAAGAGGGCTTTTCAAAAAAGCTCAAGAGCTTTCAACTCTTTGTGATGCTGATATTGGACTCATTGTTTTCTCTGCTACTGGAAAACTTTTTGAGTATTCAAGCTCCAGGTATGTTTTTCCTTTTTTTTACTCGAGAAATCAATCCAATCGATCGATCGTGGTTACGATACAATTTCAAGGACTAGTAATAATTATTCATAAAATTATAACAAAACAAACGAAATTTGTAGTACATATGATTATGGTCTAGTTTCTTTTTATTGGTTTGTTTCACTAATTAATTAAAAGTTTTTTATTTTTCATTTGGGAGTTATAAAAAGCCCATGACTTGTCTGTCAGAAAAATCTCTTACTTTTCTTGTCTGTCAGATACTTGGAGAGTTCCAAATTTTTTGGGGAAAAAAAAAGCTACAGTAAGATTGATAATGCCATATTTGGTGTGTGTGCTATTACTATAAAAGAGAGAAATAAAGTTTCTCATAAAATGTGAGTATGTTCTAAAGCAATTTGTTTATAAACTATTTAATGCTTCGATTTTATGTAATTTTTACCGTACGAGATCTTTTAGAGCTTTAATTTGTACTTGAATTTTATTTAAAATACTTCTGCATAAATTAACACATATAATCATAGGTTGAATTTTCATGACTACTTAATTTGATAAGATATATATGTCGTTAGAACAGCAAAAGCAGCATAGTTTTGTTTTGATTAATGTATGACATAATCTAAAAAAATTCTCTTAGATTACTCGTGTACCAACGGTGATAAGTTTTTAACTAGTGTCATTGTATGTAGATGATAATTCAAGTGTCAGACAATATTGTGTGTTTGGTACGAAAGATAATATTTTTTTATGAAAAATATTTTCTTGAAAAATAAGTAATTTTTTAAACTTATTTCTAGTGTTTGTTAAGTAAGTAAAAAAATGTTCTCTCAAAAGCATTTATAACTAATTTAGCAAAATCCTGTAGAGGTGAGGAGTGGGGCCTCGAGGATGTCGGGGGTGGGATGGTCAAGGGATAGGGGTTCGGGGCTTTGGGTGAGAGAGGAGGATATACAATGAAACATATAATGTCATTTATCAAATTATTTTTCATACTTCCATTTAAGAAAATCATTTTCCTCATTTTAAAAAACTTTATTACTGAATATGTATTCCAAAATTTTTGTTCAACTAAACATGGAAAAATACAAAATATTTTCTTCCATACCAAACACTTAATGTCAATTTCAAAAGGATGTTTGGTTTGTTAGGCATCTTGTGTTGATCAGTACTGATTTCCTCTCTTGGATTTGCCTGTCTTACTACAATTTTCTTAGCAGGTGGTTCATGTTTAATCCATTGGGATAGACTAATTTGGGCTGATGACACTTTGTAACGACTTAGCATGTCTGTAAAAGTAGTGAATTTATGTTATGGCTGCCCTCCGACTTTCCACAATCTTTTCTGAGTTGTTCAAATTGATTGAATCTTTATCAATTTAGTTAGAATAAAATTATTGATACATAGTATAGACTAAGTTAACTCATACTTGAAATCTTTACCGAGCTATATACCTATAATCATATAAGCAAAATAAACATATTTCTTAGCTTAATATTCGAAAACAATAGTATTTATTAGCTCAAAGATACTAAAAACATGCTTATTTATGACAATGTGATTCTTAGCGTAATATCGTAAAAACAATAGAATTAGCTCAAAGAATACTTAAAAACATGCTACCTTTAATAAGAAGCTTAAAACATGAAGCTCATTTTTAATTACCTCCTTCATATTTGACTTATTGAACTTTTTCTTCCCTTTCCTCAGTTTTAGTGACTCCTAATTAATAAGTTGAACATCAACAAGATCCATGATGTGCAAACTAATACTAAATAGAAGTAATATAAGAAAGGAGGACATATATCTTAACCTCCGCAACCAGATGAAGAATGATGTGAATTGGTACCTTTGACATATAGTGAGCAAAGAATAGACCTAGCGGCTAGCACTACATAAAAAATATCATTAGTGACAATTAATTAACAACAATAGATTAATTACCATTAGCGACAATTAATATCTAAAACCTTTAGTGATATTGATTCTAACACTTAACTAATGTCTGTACAGATTTTAATACTCTTTATTGATTTCTATATTTATTGTAGCTAAAAATAATTTATATGATAGGATAAGTAGCATCTCAAAGACTCCTTGGGAGTTCAAATTTTTTTGTATAAAAGGATTAATTAAATTAACAATAGATTATATGAAGGAAGTAAATCATATAATCAACAACTGAAGAATTTACTTTACTCTCTCTATATATAGTGGAGTTAAATCTACTTAACAAAGAGAAAGTAAATATTAGAAGAAAATGACTCCCCAAATCTTGAATTTAATTTGTTCCTAGATATCTTGATATTTTGTGAAGGTTTTTTCACATCTTATTCTTTGCCTCCATGGTGTGTCACCAAAATAATTCCACCCATCTCACCATGAAATTATTCATTCTTTTTTTTGAATTTCAAAATCAACGTTGATAAAATTTACAAATTCAATTTTTAATTTGAAAAAAAATGCTCCAAACATGTTTCCCTCTCTAATATGAACTTTTATATATTTGAAATCTATGATCAAATGCGTACGATAAATTCTATTTACAAGCCCCACCCAAAAATCCCTTGAAGTGCGTCCACTAAAGCAGAAAATTCGATTTTGGTGCTGCACAACTGAAAACTAGCTATGAAGTGTCATTTGCTGTCTGGGAATAATTTTCTAGTGTTTTTTACTGTATGTCCAGAGCTATTTATTATCCCTCCAAATATAATAGTGTTCCTTTTCTTCTATTATCCATATTTTGCGTGCCATAAAAAAAAATTCAAAGATAAAGTGGATATATATTCTAACCATTTGATCAAGTAAAGGAAATATTTATTCCAAAAATACATATAACTAATATCGGCTCATAATTCATAACACACATTTTCACCTTAATTCGATGGTGATGGAGCGTTTTACGTTGAACTCTACAACTCCTTAATACTTCTTTGAGCTGCCTCTACCTCTCTTTATTTTCACTATACCTAAAATCTCACACCTCCTCATTAATGAGACATTTATGCATCTCCGATCGTTTTCATATTTCTGAACCAACTCAGTCTTGCTTCTCTCGTCGAGTTACTCCCATCTAGTTCCATGTATCTGTGCTTTTAATCCTATATCTCCTTATATATCCACACTCAATCTCAACATTCTCAATTTTGCTACTTTCAGTTTGACCACCACTTTAAGACTCAAACTTTTGTTTCTTTAGAAATTTATAATTGATCTGTTAAGCTAATGTGCAAAAGATGATTGGAGTATTGTACTAGATAACAAATGAAAAAAACTTTTAAATATAGATTTGACATGCTTCAAAGGAGCTGAATATTAAGGACAAAAAACAAAACAAATGGTAAATTTTTAAATATAATTTTTTCAATAGTTGTCTATTTATATTCTCTTTATCCCATGACATTATTCGGCTTACACAACTTGTAAAAGTGAAATATTCTCCAACAGAAGGGGTGTGAGAGTAGAGTTCTAAACTATAGGCTCGTTTCATATGAGAGACAAATATAGATAGTTTCACGAGAAAAATTTAGTACTGTCTTATATCTTGTTTAGTTATATTAATCTTCGAATAAATTATGTCAAGATCAATAAATTAGTATGAAGATAAGTTAATTACTATAAACAGTTAATTAACTACACTAATAAAATTACAAAATTTTGAGGATCAAGAAAACCAAACATGGCCATATTCAATTTTTATGTGATTTTGTAAATTTTGGTTAGGGAAACTAGCAATTATGCTATAAGTTTTTTCACATCGTTGATCAATGAAGGCTGAGTGTTATTTATGTTGAAGCTTGTTTCATTATTTATGTATCGTTTACACAGCATGATGCAACTGATTGAGAAGCACAAGATGCAGTCAGAAAGGGATGGTATGGATAATCCAGAACAACTGCATTCTTCTAACATTCTGGTAAATTATGTATATTGTTAAGTCTCTGAGGTCATCATAAATTTAATGGCAATGATATTATATTATGAACAGTTAATACGTGATCATGAAGTGTATAAATTTTTAATTTTTTTTTGAAAATTGGGGATACGGGGAGGGGATTATAAGGTGGGGAATTGAATCTTCACCAACAAGGTTGAAGTTTATATAGCCATCCAACTAAGCTGCTAAGATATCCCGCTGAAGTGTACAAATTATTTGGCCTAACTTAGATTTTGGGAAGTGTTCTTTTTTCTTCATAAGTTAGGCTAATTTTGTTGGGCTAATACTAGAATGTACTTGTAATGTTTCAAATGTGCTTCCCTGAAAAAAACTACACTTAGTTATTTTTCCTTGAAAGCTTAAAAAGTATCTTCTTTTTTTTATAGCAAATTTATCAGTAGACAAAGTTTAGTGGCCTTTTGTTAAACATGAACAAAAAAAAAACTATCAATAGGGATATGTACAAATAAGAGGGCTAGACCTTACCTTACTAATCTTAATGAAGTACCTAACTTCTGCTACCTAAAAAGCATGAAGAAAATAATAGCTTTAGAGAGAACTAAATATTTTTTTTATCTCCACAGAATTTGTATGCTTAAATAATATGTCAACCAAATATATCAACTTTTCGAAATAAGCATTATTTTTTAATTCATAAAAATTTGACCAAACAAACTATGATCATTTCAATTCCCATCTAACTTAGTAAACACAAGCAAATATTTCATTTTCCAGAGCGAGAAGAAAACCCATGCAATGCTTAACAGGGACTTTGTGGAGAAGAATCGGGAGTTAAGGTAATTGTTGGTTTTATTTGAAGCATGATTCATAATTTAATGTGCCTATTATTGTAAAGTCTGTAATTAAAGATGTATCCAATTTTTTGTTGGACAGATTATAGATGCAATTTTAATCTATAAAATACTTTCTTCATCCATCTTTATTTGTTCATTCTATTATTTTGGAATGTCCAACAATACTTGTCCAGTTTATAAAATCGATAAATAGTTTACCAAGTTATGTCTATTTTATCCTTACTATTATATTTAGATGGCTTATATTTAGTAAGGGTGATTTGGTAAAAATATCTATATCATTTATGCTTCTTAAATCACTAAGAGAAATTGATAATAATGAGCAACTATTGTTGGACAAATGACATTATACATATTATTTATGTTCTACAATTAGAGATACCCTTCATTGTTAATTGTTGCATCTCATTATACATATCTTGGTGCTGCAAAAGTTTGCCTAATTGTAGTAATAATTACTTTCAAATTTCAACTTATATGACTTATTATGCTAGGCAACTACATGGAGAAGAGCTGCAAGGACTTGGTTTGGATGAATTAATGAAATTGGAGAAATTAGTCGAGGGAGGAATAAGTCGTGTCCTCAAAATTAAGGTCCTATTTACTTAATTCCCTTCTTCCTATTTTAAAATTGCTTAGTCTTCGTCTCTTATTCTTCAATGTGTATTATTATATATTTTTGTATTTGCTTTTATATCTTTTGCTGTTGTATTTTCTTGGAATCATGCTTCAAAAAATATTTCTTTGAGCTGAGAGTCTATATCGCAAATAGTCTCTCTATCCCTCAAAGATAAAAGTATTGTTCGCATATATTTTACTCTTTTTGTACCTCACTTGTAAAATTACACCAGATATGTTGTTGTTTTCTACTTAATTTCCCTCCTCATTTGCACTTGTGTGATTAATACTCCCTTTCCTTATTAGTTGATCATTATACTAAATGTAATTGTCTCGTATTAGTTGATCACCTTAGTAAATCCAAAAACATCTTTTTTTATATTATTCATGCAATTCATTTTTTTTAAAGTGTTCATAATTGTGTATAAATTTCTCAAATAGTTTTTTAAAGGATTAATTAGTATAATTACCTTCTTATTTATAATTTCTTAAGCGTTGTGCAAAATGAAAAGTAAACAACTAATATGAGATCGAAAGGAGTATATAATTGGTCCTACAACATGCATTGATTCCATTAACTTGCGTTTTCAGGGTGACAAGTTTATGAAAGAGATCAGTTCCCTCAAGAAAAAGGCAAGTCATGCATTAACTGATTGAATGTTGATTTCTCAGTACAACTTTCTTTTACTTAATTAGGAAATACTATTTGATTCTTCAGCAACTTAAGTTGACAGGAATTCCAATGTGGTTTTTGGAAGACAATTATAGGGAAAAATATGTCCAGATTATGTATAATATGGAGAATTAAGTTCTTGAGTACTTTTGGGATATGCATAAGTACCCCATCAAAATTTCAGTGATACCTAAATTTAATAGGTTTCTATTATTCCAAACTCATTTTTAAAAATATTTTCATGCACCTTTTATATTCACTGTGACACCTTCAACCAACTAAATAGATTATGTTTGTACAGCACGAGCATGCCAGGTGAAAAAACCACTTAGTTTAACAATTTTAGTCTGTTCTGTTCTTACCCTTCAAAAATAATGTCATATTTTCTCTTGCCGTTCGAACAAGATAACAAGGGACGTTAAGGTGACGTGGTAGAGGTGATACCCATCACGTGTGTCAAAGGAGATGGCGGTTGATTAATTGCTTCAAGCATTGGATAAGTGATGTTTATGTGTCAATACCCTTCAATTTTTGTCTTAGGGTTTAAAGTGATTTAAAAATAATTTTGATCAACCACTAGAAAAGGATATATATAATAATATTTCATGGCATCTTATAAGTAGCTCTCAATATGCAGGAAGCTAAACTCCAGGAAGAGAATTCACAGTTGAAAAAGCAATCACAAGTAAATTATTCTGCAATTAATTGTATTTTTGGCATAATTTGTTTAATGAATTACTCCCTAAGTCACATTAATTCATGAGCAGGCAAGATTGAATGAAGAAGGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACGAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATGGTACGTATCCAAATCCTAAACTCTGAACCCTAAATCCTAACATTTTTCACGTCTAATTTGTTATTTATACACGTTTATCTTTGCAGCTTGGCTTTTCCTTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTCTAATATTTATTATGGATCATAATATAGTGAAATGTATAAAATTGATTAGATTGGTTGATCAGGCTCCGTTAAAAAAACATTGGGACCATAGAGTTCATTGAGAATCAAAGGGTCAACAGTCTAATCAGAGAGTCATGTGATATTTAGCTAGGTGCTATGTATTAATCTATTT</genome_strand>
        <mrna_strand>TAAGAAGCAAGGAAATGGTGAGACAAAAAATTCAGACCTGGAAGATAGACAATTTGACAGCAAGACAAGTGACATTTTCAAAGAGAAGAAGAGGGCTTTTCAAAAAAGCTCAAGAGCTTTCAACTCTTTGTGATGCTGATATTGGACTCATTGTTTTCTCTGCTACTGGAAAACTTTTTGAGTATTCAAGCTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCAACTGATTGAGAAGCACAAGATGCAGTCAGAAAGGGATAGTATGGATAATCCAGAACAACTGCATTCTTCTAACCTTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAAGAAAACCCATGCAATGCTTAGCAGGGACTTTGTGGAGAAGAATCGGGAGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTACATGGAGAAGAGCTGCAAGGACTTGGGTTGGATGAATTAATGAAATTGGAGAAATTAGTCGAGGGAGGAATAAGTCGTGTCCTCAAAATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAGTTTATGAAAGAGATCAGTTCCCTCAAGAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTAAACTCCAGGAAGAGAATTCACTGTTGAAAAAGCAATCACAA..................................................................................GCAAGATTGAAT---GAAGGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACCAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATG......................................................................................CTTGGCTTTTCCTTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTCTAGTATTTATTATGGATCATAATATAGTGAAATGTATAAAATTGATTAGACTGGTTGACCAGGCCCCG-TGAAAAAACATTGGGACCATAGAGTTCATTGGGATTCGAAGGGTCAACGGTCTAATCAGAGAGTCATGTGATATTTAGCTAGGTGCTATGTATTAATCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694704" ref_strand="+" ref_description="SGN-E694704 [LH_Ea04J22](-)">
      <seq>ggaaatggggagacaaaaattcagatcaggaagatagacaatttgacagcaagacaagtgacattttcaaagagaagaagagggttttcaaaaaagctcaagagctttcaactctttgtgatgctgatattggactcattgttttctctgctactggaaaactttttgagtattcaagctccagcatgatgcaactgattgagaagcacaagatgcagtcagaaagggatagtatggataatccagaacaactgcattcttctaaccttctgagcgagaagaaaacccatgcaatgcttagcagggactttgtggagaagaatcgggagttaaggcaactacatggagaagagctgcaaggacttgggttggatgaattaatgaaattggagaaattagtcgagggaggaataagtcgtgtcctcaaaattaagggtgacaagtttatgaaagagatcagttccctcaagaaaaaggaagctaaactccaggaagagaattcactgttgaaaaagcaatcacaagcaagattgaatgaagggcaaaatgtaattgagcaaggacattcagcagactccatcaccaacaatcgcagcttagtcaatgactcagatactagtctcaagttatgcttggcttttccttagtgagctccatccatatgaaaatgggagataatatagttactcaaacaagggcgagtaattttctagtatttattatggatcataatatagtgaaatgtataaaattgattagactggttgaccaggccccgtgaaaaaacattgggaccatagagttcattgggattcgaagggtcaacggtctaatcagagagtcatgtgatattaaaaggggtgctatgtattaatctatttaaagaatcaacttataaggggtatttattagcagtaatttcttgataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="104121" stop="112210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104421" g_stop="104606" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104607" i_stop="108431" i_length="3825">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108432" g_stop="108519" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="272" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108520" i_stop="109275" i_length="756">
            <donor d_prob="0.898" d_score="0.96"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109276" g_stop="109337" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="334" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109338" i_stop="109849" i_length="512">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109850" g_stop="109949" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="434" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109950" i_stop="110564" i_length="615">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110565" g_stop="110606" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="476" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110607" i_stop="111283" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111284" g_stop="111331" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="524" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="111332" i_stop="111413" i_length="82">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111414" g_stop="111523" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="631" r_length="107" r_score="0.964"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="111524" i_stop="111609" i_length="86">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111610" g_stop="111926" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="945" r_length="314" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E694704" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>953</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104421" e_stop="104606"/>
          <exon e_start="108432" e_stop="108519"/>
          <exon e_start="109276" e_stop="109337"/>
          <exon e_start="109850" e_stop="109949"/>
          <exon e_start="110565" e_stop="110606"/>
          <exon e_start="111284" e_stop="111331"/>
          <exon e_start="111414" e_stop="111523"/>
          <exon e_start="111610" e_stop="111926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGGTGAGACAAAAAATTCAGATCAAGAAGATAGACAATTTGACAGCAAGACAAGTGACATTTTCAAAGAGAAGAAGAGGGCTTTTCAAAAAAGCTCAAGAGCTTTCAACTCTTTGTGATGCTGATATTGGACTCATTGTTTTCTCTGCTACTGGAAAACTTTTTGAGTATTCAAGCTCCAGGTATGTTTTTCCTTTTTTTTACTCGAGAAATCAATCCAATCGATCGATCGTGGTTACGATACAATTTCAAGGACTAGTAATAATTATTCATAAAATTATAACAAAACAAACGAAATTTGTAGTACATATGATTATGGTCTAGTTTCTTTTTATTGGTTTGTTTCACTAATTAATTAAAAGTTTTTTATTTTTCATTTGGGAGTTATAAAAAGCCCATGACTTGTCTGTCAGAAAAATCTCTTACTTTTCTTGTCTGTCAGATACTTGGAGAGTTCCAAATTTTTTGGGGAAAAAAAAAGCTACAGTAAGATTGATAATGCCATATTTGGTGTGTGTGCTATTACTATAAAAGAGAGAAATAAAGTTTCTCATAAAATGTGAGTATGTTCTAAAGCAATTTGTTTATAAACTATTTAATGCTTCGATTTTATGTAATTTTTACCGTACGAGATCTTTTAGAGCTTTAATTTGTACTTGAATTTTATTTAAAATACTTCTGCATAAATTAACACATATAATCATAGGTTGAATTTTCATGACTACTTAATTTGATAAGATATATATGTCGTTAGAACAGCAAAAGCAGCATAGTTTTGTTTTGATTAATGTATGACATAATCTAAAAAAATTCTCTTAGATTACTCGTGTACCAACGGTGATAAGTTTTTAACTAGTGTCATTGTATGTAGATGATAATTCAAGTGTCAGACAATATTGTGTGTTTGGTACGAAAGATAATATTTTTTTATGAAAAATATTTTCTTGAAAAATAAGTAATTTTTTAAACTTATTTCTAGTGTTTGTTAAGTAAGTAAAAAAATGTTCTCTCAAAAGCATTTATAACTAATTTAGCAAAATCCTGTAGAGGTGAGGAGTGGGGCCTCGAGGATGTCGGGGGTGGGATGGTCAAGGGATAGGGGTTCGGGGCTTTGGGTGAGAGAGGAGGATATACAATGAAACATATAATGTCATTTATCAAATTATTTTTCATACTTCCATTTAAGAAAATCATTTTCCTCATTTTAAAAAACTTTATTACTGAATATGTATTCCAAAATTTTTGTTCAACTAAACATGGAAAAATACAAAATATTTTCTTCCATACCAAACACTTAATGTCAATTTCAAAAGGATGTTTGGTTTGTTAGGCATCTTGTGTTGATCAGTACTGATTTCCTCTCTTGGATTTGCCTGTCTTACTACAATTTTCTTAGCAGGTGGTTCATGTTTAATCCATTGGGATAGACTAATTTGGGCTGATGACACTTTGTAACGACTTAGCATGTCTGTAAAAGTAGTGAATTTATGTTATGGCTGCCCTCCGACTTTCCACAATCTTTTCTGAGTTGTTCAAATTGATTGAATCTTTATCAATTTAGTTAGAATAAAATTATTGATACATAGTATAGACTAAGTTAACTCATACTTGAAATCTTTACCGAGCTATATACCTATAATCATATAAGCAAAATAAACATATTTCTTAGCTTAATATTCGAAAACAATAGTATTTATTAGCTCAAAGATACTAAAAACATGCTTATTTATGACAATGTGATTCTTAGCGTAATATCGTAAAAACAATAGAATTAGCTCAAAGAATACTTAAAAACATGCTACCTTTAATAAGAAGCTTAAAACATGAAGCTCATTTTTAATTACCTCCTTCATATTTGACTTATTGAACTTTTTCTTCCCTTTCCTCAGTTTTAGTGACTCCTAATTAATAAGTTGAACATCAACAAGATCCATGATGTGCAAACTAATACTAAATAGAAGTAATATAAGAAAGGAGGACATATATCTTAACCTCCGCAACCAGATGAAGAATGATGTGAATTGGTACCTTTGACATATAGTGAGCAAAGAATAGACCTAGCGGCTAGCACTACATAAAAAATATCATTAGTGACAATTAATTAACAACAATAGATTAATTACCATTAGCGACAATTAATATCTAAAACCTTTAGTGATATTGATTCTAACACTTAACTAATGTCTGTACAGATTTTAATACTCTTTATTGATTTCTATATTTATTGTAGCTAAAAATAATTTATATGATAGGATAAGTAGCATCTCAAAGACTCCTTGGGAGTTCAAATTTTTTTGTATAAAAGGATTAATTAAATTAACAATAGATTATATGAAGGAAGTAAATCATATAATCAACAACTGAAGAATTTACTTTACTCTCTCTATATATAGTGGAGTTAAATCTACTTAACAAAGAGAAAGTAAATATTAGAAGAAAATGACTCCCCAAATCTTGAATTTAATTTGTTCCTAGATATCTTGATATTTTGTGAAGGTTTTTTCACATCTTATTCTTTGCCTCCATGGTGTGTCACCAAAATAATTCCACCCATCTCACCATGAAATTATTCATTCTTTTTTTTGAATTTCAAAATCAACGTTGATAAAATTTACAAATTCAATTTTTAATTTGAAAAAAAATGCTCCAAACATGTTTCCCTCTCTAATATGAACTTTTATATATTTGAAATCTATGATCAAATGCGTACGATAAATTCTATTTACAAGCCCCACCCAAAAATCCCTTGAAGTGCGTCCACTAAAGCAGAAAATTCGATTTTGGTGCTGCACAACTGAAAACTAGCTATGAAGTGTCATTTGCTGTCTGGGAATAATTTTCTAGTGTTTTTTACTGTATGTCCAGAGCTATTTATTATCCCTCCAAATATAATAGTGTTCCTTTTCTTCTATTATCCATATTTTGCGTGCCATAAAAAAAAATTCAAAGATAAAGTGGATATATATTCTAACCATTTGATCAAGTAAAGGAAATATTTATTCCAAAAATACATATAACTAATATCGGCTCATAATTCATAACACACATTTTCACCTTAATTCGATGGTGATGGAGCGTTTTACGTTGAACTCTACAACTCCTTAATACTTCTTTGAGCTGCCTCTACCTCTCTTTATTTTCACTATACCTAAAATCTCACACCTCCTCATTAATGAGACATTTATGCATCTCCGATCGTTTTCATATTTCTGAACCAACTCAGTCTTGCTTCTCTCGTCGAGTTACTCCCATCTAGTTCCATGTATCTGTGCTTTTAATCCTATATCTCCTTATATATCCACACTCAATCTCAACATTCTCAATTTTGCTACTTTCAGTTTGACCACCACTTTAAGACTCAAACTTTTGTTTCTTTAGAAATTTATAATTGATCTGTTAAGCTAATGTGCAAAAGATGATTGGAGTATTGTACTAGATAACAAATGAAAAAAACTTTTAAATATAGATTTGACATGCTTCAAAGGAGCTGAATATTAAGGACAAAAAACAAAACAAATGGTAAATTTTTAAATATAATTTTTTCAATAGTTGTCTATTTATATTCTCTTTATCCCATGACATTATTCGGCTTACACAACTTGTAAAAGTGAAATATTCTCCAACAGAAGGGGTGTGAGAGTAGAGTTCTAAACTATAGGCTCGTTTCATATGAGAGACAAATATAGATAGTTTCACGAGAAAAATTTAGTACTGTCTTATATCTTGTTTAGTTATATTAATCTTCGAATAAATTATGTCAAGATCAATAAATTAGTATGAAGATAAGTTAATTACTATAAACAGTTAATTAACTACACTAATAAAATTACAAAATTTTGAGGATCAAGAAAACCAAACATGGCCATATTCAATTTTTATGTGATTTTGTAAATTTTGGTTAGGGAAACTAGCAATTATGCTATAAGTTTTTTCACATCGTTGATCAATGAAGGCTGAGTGTTATTTATGTTGAAGCTTGTTTCATTATTTATGTATCGTTTACACAGCATGATGCAACTGATTGAGAAGCACAAGATGCAGTCAGAAAGGGATGGTATGGATAATCCAGAACAACTGCATTCTTCTAACATTCTGGTAAATTATGTATATTGTTAAGTCTCTGAGGTCATCATAAATTTAATGGCAATGATATTATATTATGAACAGTTAATACGTGATCATGAAGTGTATAAATTTTTAATTTTTTTTTGAAAATTGGGGATACGGGGAGGGGATTATAAGGTGGGGAATTGAATCTTCACCAACAAGGTTGAAGTTTATATAGCCATCCAACTAAGCTGCTAAGATATCCCGCTGAAGTGTACAAATTATTTGGCCTAACTTAGATTTTGGGAAGTGTTCTTTTTTCTTCATAAGTTAGGCTAATTTTGTTGGGCTAATACTAGAATGTACTTGTAATGTTTCAAATGTGCTTCCCTGAAAAAAACTACACTTAGTTATTTTTCCTTGAAAGCTTAAAAAGTATCTTCTTTTTTTTATAGCAAATTTATCAGTAGACAAAGTTTAGTGGCCTTTTGTTAAACATGAACAAAAAAAAAACTATCAATAGGGATATGTACAAATAAGAGGGCTAGACCTTACCTTACTAATCTTAATGAAGTACCTAACTTCTGCTACCTAAAAAGCATGAAGAAAATAATAGCTTTAGAGAGAACTAAATATTTTTTTTATCTCCACAGAATTTGTATGCTTAAATAATATGTCAACCAAATATATCAACTTTTCGAAATAAGCATTATTTTTTAATTCATAAAAATTTGACCAAACAAACTATGATCATTTCAATTCCCATCTAACTTAGTAAACACAAGCAAATATTTCATTTTCCAGAGCGAGAAGAAAACCCATGCAATGCTTAACAGGGACTTTGTGGAGAAGAATCGGGAGTTAAGGTAATTGTTGGTTTTATTTGAAGCATGATTCATAATTTAATGTGCCTATTATTGTAAAGTCTGTAATTAAAGATGTATCCAATTTTTTGTTGGACAGATTATAGATGCAATTTTAATCTATAAAATACTTTCTTCATCCATCTTTATTTGTTCATTCTATTATTTTGGAATGTCCAACAATACTTGTCCAGTTTATAAAATCGATAAATAGTTTACCAAGTTATGTCTATTTTATCCTTACTATTATATTTAGATGGCTTATATTTAGTAAGGGTGATTTGGTAAAAATATCTATATCATTTATGCTTCTTAAATCACTAAGAGAAATTGATAATAATGAGCAACTATTGTTGGACAAATGACATTATACATATTATTTATGTTCTACAATTAGAGATACCCTTCATTGTTAATTGTTGCATCTCATTATACATATCTTGGTGCTGCAAAAGTTTGCCTAATTGTAGTAATAATTACTTTCAAATTTCAACTTATATGACTTATTATGCTAGGCAACTACATGGAGAAGAGCTGCAAGGACTTGGTTTGGATGAATTAATGAAATTGGAGAAATTAGTCGAGGGAGGAATAAGTCGTGTCCTCAAAATTAAGGTCCTATTTACTTAATTCCCTTCTTCCTATTTTAAAATTGCTTAGTCTTCGTCTCTTATTCTTCAATGTGTATTATTATATATTTTTGTATTTGCTTTTATATCTTTTGCTGTTGTATTTTCTTGGAATCATGCTTCAAAAAATATTTCTTTGAGCTGAGAGTCTATATCGCAAATAGTCTCTCTATCCCTCAAAGATAAAAGTATTGTTCGCATATATTTTACTCTTTTTGTACCTCACTTGTAAAATTACACCAGATATGTTGTTGTTTTCTACTTAATTTCCCTCCTCATTTGCACTTGTGTGATTAATACTCCCTTTCCTTATTAGTTGATCATTATACTAAATGTAATTGTCTCGTATTAGTTGATCACCTTAGTAAATCCAAAAACATCTTTTTTTATATTATTCATGCAATTCATTTTTTTTAAAGTGTTCATAATTGTGTATAAATTTCTCAAATAGTTTTTTAAAGGATTAATTAGTATAATTACCTTCTTATTTATAATTTCTTAAGCGTTGTGCAAAATGAAAAGTAAACAACTAATATGAGATCGAAAGGAGTATATAATTGGTCCTACAACATGCATTGATTCCATTAACTTGCGTTTTCAGGGTGACAAGTTTATGAAAGAGATCAGTTCCCTCAAGAAAAAGGCAAGTCATGCATTAACTGATTGAATGTTGATTTCTCAGTACAACTTTCTTTTACTTAATTAGGAAATACTATTTGATTCTTCAGCAACTTAAGTTGACAGGAATTCCAATGTGGTTTTTGGAAGACAATTATAGGGAAAAATATGTCCAGATTATGTATAATATGGAGAATTAAGTTCTTGAGTACTTTTGGGATATGCATAAGTACCCCATCAAAATTTCAGTGATACCTAAATTTAATAGGTTTCTATTATTCCAAACTCATTTTTAAAAATATTTTCATGCACCTTTTATATTCACTGTGACACCTTCAACCAACTAAATAGATTATGTTTGTACAGCACGAGCATGCCAGGTGAAAAAACCACTTAGTTTAACAATTTTAGTCTGTTCTGTTCTTACCCTTCAAAAATAATGTCATATTTTCTCTTGCCGTTCGAACAAGATAACAAGGGACGTTAAGGTGACGTGGTAGAGGTGATACCCATCACGTGTGTCAAAGGAGATGGCGGTTGATTAATTGCTTCAAGCATTGGATAAGTGATGTTTATGTGTCAATACCCTTCAATTTTTGTCTTAGGGTTTAAAGTGATTTAAAAATAATTTTGATCAACCACTAGAAAAGGATATATATAATAATATTTCATGGCATCTTATAAGTAGCTCTCAATATGCAGGAAGCTAAACTCCAGGAAGAGAATTCACAGTTGAAAAAGCAATCACAAGTAAATTATTCTGCAATTAATTGTATTTTTGGCATAATTTGTTTAATGAATTACTCCCTAAGTCACATTAATTCATGAGCAGGCAAGATTGAATGAAGAAGGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACGAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATGGTACGTATCCAAATCCTAAACTCTGAACCCTAAATCCTAACATTTTTCACGTCTAATTTGTTATTTATACACGTTTATCTTTGCAGCTTGGCTTTTCCTTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTCTAATATTTATTATGGATCATAATATAGTGAAATGTATAAAATTGATTAGATTGGTTGATCAGGCTCCGTTAAAAAAACATTGGGACCATAGAGTTCATTGAGAATCAAAGGGTCAACAGTCTAATCAGAGAGTCATGTGATATTTAGCTAGGTGCTATGTATTAATCTATTTAAAGAATCAACTTAAATATATGTATTTATTAGCAGTAATTTCTTTGATTATTCAAGAAGCACCAAA</genome_strand>
        <mrna_strand>GGAAATGGGGAGAC-AAAAATTCAGATCAGGAAGATAGACAATTTGACAGCAAGACAAGTGACATTTTCAAAGAGAAGAAGAGGG-TTTTCAAAAAAGCTCAAGAGCTTTCAACTCTTTGTGATGCTGATATTGGACTCATTGTTTTCTCTGCTACTGGAAAACTTTTTGAGTATTCAAGCTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCAACTGATTGAGAAGCACAAGATGCAGTCAGAAAGGGATAGTATGGATAATCCAGAACAACTGCATTCTTCTAACCTTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAAGAAAACCCATGCAATGCTTAGCAGGGACTTTGTGGAGAAGAATCGGGAGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTACATGGAGAAGAGCTGCAAGGACTTGGGTTGGATGAATTAATGAAATTGGAGAAATTAGTCGAGGGAGGAATAAGTCGTGTCCTCAAAATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAGTTTATGAAAGAGATCAGTTCCCTCAAGAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTAAACTCCAGGAAGAGAATTCACTGTTGAAAAAGCAATCACAA..................................................................................GCAAGATTGAAT---GAAGGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACCAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATG......................................................................................CTTGGCTTTTCCTTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTCTAGTATTTATTATGGATCATAATATAGTGAAATGTATAAAATTGATTAGACTGGTTGACCAGGCCCCG-TGAAAAAACATTGGGACCATAGAGTTCATTGGGATTCGAAGGGTCAACGGTCTAATCAGAGAGTCATGTGATATTAAAAGGGGTGCTATGTATTAATCTATTTAAAGAATCAACTTATA-AGGGGTATTTATTAGCAGTAATTTC-TTGATAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337615" ref_strand="+" ref_description="SGN-E337615 [cTOE-11-N7]">
      <seq>acaatttgacagcaagacaagtgacattttcaaagagaagaagagggcttttcaaaaaagctcaagagctttcaactctttgtgatgctgatattggactcattgttttctctgctactggaaaactttttgagtattcaagctccagcatgatgcaactgattgagaagcacaagatgcagtcagaaagggatggtatggataatccagaacaactgcattcttctaacattctgagcgagaagaaaacccatgcaatgcttaacagggactttgtggagaagaatcgggagttaaggcaactacatggagaagagctgcaaggacttggtttggatgaattaatgaaattggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="104159" stop="110209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104459" g_stop="104606" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104607" i_stop="108431" i_length="3825">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108432" g_stop="108519" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="236" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108520" i_stop="109275" i_length="756">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109276" g_stop="109337" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="298" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109338" i_stop="109849" i_length="512">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109850" g_stop="109909" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="358" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E337615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104459" e_stop="104606"/>
          <exon e_start="108432" e_stop="108519"/>
          <exon e_start="109276" e_stop="109337"/>
          <exon e_start="109850" e_stop="109909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTGACAGCAAGACAAGTGACATTTTCAAAGAGAAGAAGAGGGCTTTTCAAAAAAGCTCAAGAGCTTTCAACTCTTTGTGATGCTGATATTGGACTCATTGTTTTCTCTGCTACTGGAAAACTTTTTGAGTATTCAAGCTCCAGGTATGTTTTTCCTTTTTTTTACTCGAGAAATCAATCCAATCGATCGATCGTGGTTACGATACAATTTCAAGGACTAGTAATAATTATTCATAAAATTATAACAAAACAAACGAAATTTGTAGTACATATGATTATGGTCTAGTTTCTTTTTATTGGTTTGTTTCACTAATTAATTAAAAGTTTTTTATTTTTCATTTGGGAGTTATAAAAAGCCCATGACTTGTCTGTCAGAAAAATCTCTTACTTTTCTTGTCTGTCAGATACTTGGAGAGTTCCAAATTTTTTGGGGAAAAAAAAAGCTACAGTAAGATTGATAATGCCATATTTGGTGTGTGTGCTATTACTATAAAAGAGAGAAATAAAGTTTCTCATAAAATGTGAGTATGTTCTAAAGCAATTTGTTTATAAACTATTTAATGCTTCGATTTTATGTAATTTTTACCGTACGAGATCTTTTAGAGCTTTAATTTGTACTTGAATTTTATTTAAAATACTTCTGCATAAATTAACACATATAATCATAGGTTGAATTTTCATGACTACTTAATTTGATAAGATATATATGTCGTTAGAACAGCAAAAGCAGCATAGTTTTGTTTTGATTAATGTATGACATAATCTAAAAAAATTCTCTTAGATTACTCGTGTACCAACGGTGATAAGTTTTTAACTAGTGTCATTGTATGTAGATGATAATTCAAGTGTCAGACAATATTGTGTGTTTGGTACGAAAGATAATATTTTTTTATGAAAAATATTTTCTTGAAAAATAAGTAATTTTTTAAACTTATTTCTAGTGTTTGTTAAGTAAGTAAAAAAATGTTCTCTCAAAAGCATTTATAACTAATTTAGCAAAATCCTGTAGAGGTGAGGAGTGGGGCCTCGAGGATGTCGGGGGTGGGATGGTCAAGGGATAGGGGTTCGGGGCTTTGGGTGAGAGAGGAGGATATACAATGAAACATATAATGTCATTTATCAAATTATTTTTCATACTTCCATTTAAGAAAATCATTTTCCTCATTTTAAAAAACTTTATTACTGAATATGTATTCCAAAATTTTTGTTCAACTAAACATGGAAAAATACAAAATATTTTCTTCCATACCAAACACTTAATGTCAATTTCAAAAGGATGTTTGGTTTGTTAGGCATCTTGTGTTGATCAGTACTGATTTCCTCTCTTGGATTTGCCTGTCTTACTACAATTTTCTTAGCAGGTGGTTCATGTTTAATCCATTGGGATAGACTAATTTGGGCTGATGACACTTTGTAACGACTTAGCATGTCTGTAAAAGTAGTGAATTTATGTTATGGCTGCCCTCCGACTTTCCACAATCTTTTCTGAGTTGTTCAAATTGATTGAATCTTTATCAATTTAGTTAGAATAAAATTATTGATACATAGTATAGACTAAGTTAACTCATACTTGAAATCTTTACCGAGCTATATACCTATAATCATATAAGCAAAATAAACATATTTCTTAGCTTAATATTCGAAAACAATAGTATTTATTAGCTCAAAGATACTAAAAACATGCTTATTTATGACAATGTGATTCTTAGCGTAATATCGTAAAAACAATAGAATTAGCTCAAAGAATACTTAAAAACATGCTACCTTTAATAAGAAGCTTAAAACATGAAGCTCATTTTTAATTACCTCCTTCATATTTGACTTATTGAACTTTTTCTTCCCTTTCCTCAGTTTTAGTGACTCCTAATTAATAAGTTGAACATCAACAAGATCCATGATGTGCAAACTAATACTAAATAGAAGTAATATAAGAAAGGAGGACATATATCTTAACCTCCGCAACCAGATGAAGAATGATGTGAATTGGTACCTTTGACATATAGTGAGCAAAGAATAGACCTAGCGGCTAGCACTACATAAAAAATATCATTAGTGACAATTAATTAACAACAATAGATTAATTACCATTAGCGACAATTAATATCTAAAACCTTTAGTGATATTGATTCTAACACTTAACTAATGTCTGTACAGATTTTAATACTCTTTATTGATTTCTATATTTATTGTAGCTAAAAATAATTTATATGATAGGATAAGTAGCATCTCAAAGACTCCTTGGGAGTTCAAATTTTTTTGTATAAAAGGATTAATTAAATTAACAATAGATTATATGAAGGAAGTAAATCATATAATCAACAACTGAAGAATTTACTTTACTCTCTCTATATATAGTGGAGTTAAATCTACTTAACAAAGAGAAAGTAAATATTAGAAGAAAATGACTCCCCAAATCTTGAATTTAATTTGTTCCTAGATATCTTGATATTTTGTGAAGGTTTTTTCACATCTTATTCTTTGCCTCCATGGTGTGTCACCAAAATAATTCCACCCATCTCACCATGAAATTATTCATTCTTTTTTTTGAATTTCAAAATCAACGTTGATAAAATTTACAAATTCAATTTTTAATTTGAAAAAAAATGCTCCAAACATGTTTCCCTCTCTAATATGAACTTTTATATATTTGAAATCTATGATCAAATGCGTACGATAAATTCTATTTACAAGCCCCACCCAAAAATCCCTTGAAGTGCGTCCACTAAAGCAGAAAATTCGATTTTGGTGCTGCACAACTGAAAACTAGCTATGAAGTGTCATTTGCTGTCTGGGAATAATTTTCTAGTGTTTTTTACTGTATGTCCAGAGCTATTTATTATCCCTCCAAATATAATAGTGTTCCTTTTCTTCTATTATCCATATTTTGCGTGCCATAAAAAAAAATTCAAAGATAAAGTGGATATATATTCTAACCATTTGATCAAGTAAAGGAAATATTTATTCCAAAAATACATATAACTAATATCGGCTCATAATTCATAACACACATTTTCACCTTAATTCGATGGTGATGGAGCGTTTTACGTTGAACTCTACAACTCCTTAATACTTCTTTGAGCTGCCTCTACCTCTCTTTATTTTCACTATACCTAAAATCTCACACCTCCTCATTAATGAGACATTTATGCATCTCCGATCGTTTTCATATTTCTGAACCAACTCAGTCTTGCTTCTCTCGTCGAGTTACTCCCATCTAGTTCCATGTATCTGTGCTTTTAATCCTATATCTCCTTATATATCCACACTCAATCTCAACATTCTCAATTTTGCTACTTTCAGTTTGACCACCACTTTAAGACTCAAACTTTTGTTTCTTTAGAAATTTATAATTGATCTGTTAAGCTAATGTGCAAAAGATGATTGGAGTATTGTACTAGATAACAAATGAAAAAAACTTTTAAATATAGATTTGACATGCTTCAAAGGAGCTGAATATTAAGGACAAAAAACAAAACAAATGGTAAATTTTTAAATATAATTTTTTCAATAGTTGTCTATTTATATTCTCTTTATCCCATGACATTATTCGGCTTACACAACTTGTAAAAGTGAAATATTCTCCAACAGAAGGGGTGTGAGAGTAGAGTTCTAAACTATAGGCTCGTTTCATATGAGAGACAAATATAGATAGTTTCACGAGAAAAATTTAGTACTGTCTTATATCTTGTTTAGTTATATTAATCTTCGAATAAATTATGTCAAGATCAATAAATTAGTATGAAGATAAGTTAATTACTATAAACAGTTAATTAACTACACTAATAAAATTACAAAATTTTGAGGATCAAGAAAACCAAACATGGCCATATTCAATTTTTATGTGATTTTGTAAATTTTGGTTAGGGAAACTAGCAATTATGCTATAAGTTTTTTCACATCGTTGATCAATGAAGGCTGAGTGTTATTTATGTTGAAGCTTGTTTCATTATTTATGTATCGTTTACACAGCATGATGCAACTGATTGAGAAGCACAAGATGCAGTCAGAAAGGGATGGTATGGATAATCCAGAACAACTGCATTCTTCTAACATTCTGGTAAATTATGTATATTGTTAAGTCTCTGAGGTCATCATAAATTTAATGGCAATGATATTATATTATGAACAGTTAATACGTGATCATGAAGTGTATAAATTTTTAATTTTTTTTTGAAAATTGGGGATACGGGGAGGGGATTATAAGGTGGGGAATTGAATCTTCACCAACAAGGTTGAAGTTTATATAGCCATCCAACTAAGCTGCTAAGATATCCCGCTGAAGTGTACAAATTATTTGGCCTAACTTAGATTTTGGGAAGTGTTCTTTTTTCTTCATAAGTTAGGCTAATTTTGTTGGGCTAATACTAGAATGTACTTGTAATGTTTCAAATGTGCTTCCCTGAAAAAAACTACACTTAGTTATTTTTCCTTGAAAGCTTAAAAAGTATCTTCTTTTTTTTATAGCAAATTTATCAGTAGACAAAGTTTAGTGGCCTTTTGTTAAACATGAACAAAAAAAAAACTATCAATAGGGATATGTACAAATAAGAGGGCTAGACCTTACCTTACTAATCTTAATGAAGTACCTAACTTCTGCTACCTAAAAAGCATGAAGAAAATAATAGCTTTAGAGAGAACTAAATATTTTTTTTATCTCCACAGAATTTGTATGCTTAAATAATATGTCAACCAAATATATCAACTTTTCGAAATAAGCATTATTTTTTAATTCATAAAAATTTGACCAAACAAACTATGATCATTTCAATTCCCATCTAACTTAGTAAACACAAGCAAATATTTCATTTTCCAGAGCGAGAAGAAAACCCATGCAATGCTTAACAGGGACTTTGTGGAGAAGAATCGGGAGTTAAGGTAATTGTTGGTTTTATTTGAAGCATGATTCATAATTTAATGTGCCTATTATTGTAAAGTCTGTAATTAAAGATGTATCCAATTTTTTGTTGGACAGATTATAGATGCAATTTTAATCTATAAAATACTTTCTTCATCCATCTTTATTTGTTCATTCTATTATTTTGGAATGTCCAACAATACTTGTCCAGTTTATAAAATCGATAAATAGTTTACCAAGTTATGTCTATTTTATCCTTACTATTATATTTAGATGGCTTATATTTAGTAAGGGTGATTTGGTAAAAATATCTATATCATTTATGCTTCTTAAATCACTAAGAGAAATTGATAATAATGAGCAACTATTGTTGGACAAATGACATTATACATATTATTTATGTTCTACAATTAGAGATACCCTTCATTGTTAATTGTTGCATCTCATTATACATATCTTGGTGCTGCAAAAGTTTGCCTAATTGTAGTAATAATTACTTTCAAATTTCAACTTATATGACTTATTATGCTAGGCAACTACATGGAGAAGAGCTGCAAGGACTTGGTTTGGATGAATTAATGAAATTGGAGAA</genome_strand>
        <mrna_strand>ACAATTTGACAGCAAGACAAGTGACATTTTCAAAGAGAAGAAGAGGGCTTTTCAAAAAAGCTCAAGAGCTTTCAACTCTTTGTGATGCTGATATTGGACTCATTGTTTTCTCTGCTACTGGAAAACTTTTTGAGTATTCAAGCTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCAACTGATTGAGAAGCACAAGATGCAGTCAGAAAGGGATGGTATGGATAATCCAGAACAACTGCATTCTTCTAACATTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAAGAAAACCCATGCAATGCTTAACAGGGACTTTGTGGAGAAGAATCGGGAGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTACATGGAGAAGAGCTGCAAGGACTTGGTTTGGATGAATTAATGAAATTGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695216" ref_strand="+" ref_description="SGN-E695216 [LH_Ea05P06](-)">
      <seq>agaaaacccatgcaatgcttagcagggactttgtggagaagaatcgggagttaaggccactccatggagaagagctgcaaggactcggcgttggatgatttaatgaaattggagaaactagtcgagggaggaataagttgtgtcctcaaaattaagggtcccaagtttatgaaagagatcagttccctcaagaaaaaggaagttaaactccaggaagagaattcactgttgacaaagcaatcccaagccagattgaatcaagggcaaaatgtaattgagcaaggacattcagcagactccatcaccaacaatcgcagcttagtcaatgactcagatactagtctcaagttatgcttggcttttcctctagtgagctccatccatatgaaaatgggagataatatagttactcaaacaagggcgagtaattttttagtctttatcatggatcataatatagtgaaatgtataaaattgattagactggttgaccaggccccgtgaaaaaacactgggtccatagagttcattgggatttgaagggtcaacggtctaatcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="108983" stop="112117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109283" g_stop="109337" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109338" i_stop="109849" i_length="512">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109850" g_stop="109949" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="156" r_length="101" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109950" i_stop="110564" i_length="615">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110565" g_stop="110606" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="198" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110607" i_stop="111283" i_length="677">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.951" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111284" g_stop="111331" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="246" r_length="48" r_score="0.917"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111332" i_stop="111413" i_length="82">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111414" g_stop="111523" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="353" r_length="107" r_score="0.945"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111524" i_stop="111609" i_length="86">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111610" g_stop="111817" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="561" r_length="208" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E695216" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109283" e_stop="109337"/>
          <exon e_start="109850" e_stop="109949"/>
          <exon e_start="110565" e_stop="110606"/>
          <exon e_start="111284" e_stop="111331"/>
          <exon e_start="111414" e_stop="111523"/>
          <exon e_start="111610" e_stop="111817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACCCATGCAATGCTTAACAGGGACTTTGTGGAGAAGAATCGGGAGTTAAGGTAATTGTTGGTTTTATTTGAAGCATGATTCATAATTTAATGTGCCTATTATTGTAAAGTCTGTAATTAAAGATGTATCCAATTTTTTGTTGGACAGATTATAGATGCAATTTTAATCTATAAAATACTTTCTTCATCCATCTTTATTTGTTCATTCTATTATTTTGGAATGTCCAACAATACTTGTCCAGTTTATAAAATCGATAAATAGTTTACCAAGTTATGTCTATTTTATCCTTACTATTATATTTAGATGGCTTATATTTAGTAAGGGTGATTTGGTAAAAATATCTATATCATTTATGCTTCTTAAATCACTAAGAGAAATTGATAATAATGAGCAACTATTGTTGGACAAATGACATTATACATATTATTTATGTTCTACAATTAGAGATACCCTTCATTGTTAATTGTTGCATCTCATTATACATATCTTGGTGCTGCAAAAGTTTGCCTAATTGTAGTAATAATTACTTTCAAATTTCAACTTATATGACTTATTATGCTAGGCAACTACATGGAGAAGAGCTGCAAGGACTTGG-TTTGGATGAATTAATGAAATTGGAGAAATTAGTCGAGGGAGGAATAAGTCGTGTCCTCAAAATTAAGGTCCTATTTACTTAATTCCCTTCTTCCTATTTTAAAATTGCTTAGTCTTCGTCTCTTATTCTTCAATGTGTATTATTATATATTTTTGTATTTGCTTTTATATCTTTTGCTGTTGTATTTTCTTGGAATCATGCTTCAAAAAATATTTCTTTGAGCTGAGAGTCTATATCGCAAATAGTCTCTCTATCCCTCAAAGATAAAAGTATTGTTCGCATATATTTTACTCTTTTTGTACCTCACTTGTAAAATTACACCAGATATGTTGTTGTTTTCTACTTAATTTCCCTCCTCATTTGCACTTGTGTGATTAATACTCCCTTTCCTTATTAGTTGATCATTATACTAAATGTAATTGTCTCGTATTAGTTGATCACCTTAGTAAATCCAAAAACATCTTTTTTTATATTATTCATGCAATTCATTTTTTTTAAAGTGTTCATAATTGTGTATAAATTTCTCAAATAGTTTTTTAAAGGATTAATTAGTATAATTACCTTCTTATTTATAATTTCTTAAGCGTTGTGCAAAATGAAAAGTAAACAACTAATATGAGATCGAAAGGAGTATATAATTGGTCCTACAACATGCATTGATTCCATTAACTTGCGTTTTCAGGGTGACAAGTTTATGAAAGAGATCAGTTCCCTCAAGAAAAAGGCAAGTCATGCATTAACTGATTGAATGTTGATTTCTCAGTACAACTTTCTTTTACTTAATTAGGAAATACTATTTGATTCTTCAGCAACTTAAGTTGACAGGAATTCCAATGTGGTTTTTGGAAGACAATTATAGGGAAAAATATGTCCAGATTATGTATAATATGGAGAATTAAGTTCTTGAGTACTTTTGGGATATGCATAAGTACCCCATCAAAATTTCAGTGATACCTAAATTTAATAGGTTTCTATTATTCCAAACTCATTTTTAAAAATATTTTCATGCACCTTTTATATTCACTGTGACACCTTCAACCAACTAAATAGATTATGTTTGTACAGCACGAGCATGCCAGGTGAAAAAACCACTTAGTTTAACAATTTTAGTCTGTTCTGTTCTTACCCTTCAAAAATAATGTCATATTTTCTCTTGCCGTTCGAACAAGATAACAAGGGACGTTAAGGTGACGTGGTAGAGGTGATACCCATCACGTGTGTCAAAGGAGATGGCGGTTGATTAATTGCTTCAAGCATTGGATAAGTGATGTTTATGTGTCAATACCCTTCAATTTTTGTCTTAGGGTTTAAAGTGATTTAAAAATAATTTTGATCAACCACTAGAAAAGGATATATATAATAATATTTCATGGCATCTTATAAGTAGCTCTCAATATGCAGGAAGCTAAACTCCAGGAAGAGAATTCACAGTTGAAAAAGCAATCACAAGTAAATTATTCTGCAATTAATTGTATTTTTGGCATAATTTGTTTAATGAATTACTCCCTAAGTCACATTAATTCATGAGCAGGCAAGATTGAATGAAGAAGGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACGAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATGGTACGTATCCAAATCCTAAACTCTGAACCCTAAATCCTAACATTTTTCACGTCTAATTTGTTATTTATACACGTTTATCTTTGCAGCTTGGCTTTTCCT-TAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTCTAATATTTATTATGGATCATAATATAGTGAAATGTATAAAATTGATTAGATTGGTTGATCAGGCTCCGTTAAAAAAACATTGGGACCATAGAGTTCATTGAGAATCAAAGGGTCAACAGTCTAATCAGA</genome_strand>
        <mrna_strand>AGAAAACCCATGCAATGCTTAGCAGGGACTTTGTGGAGAAGAATCGGGAGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTCCATGGAGAAGAGCTGCAAGGACTCGGCGTTGGATGATTTAATGAAATTGGAGAAACTAGTCGAGGGAGGAATAAGTTGTGTCCTCAAAATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGTTTATGAAAGAGATCAGTTCCCTCAAGAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTAAACTCCAGGAAGAGAATTCACTGTTGACAAAGCAATCCCAA..................................................................................GCCAGATTGAAT---CAAGGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACCAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATG......................................................................................CTTGGCTTTTCCTCTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTTTAGTCTTTATCATGGATCATAATATAGTGAAATGTATAAAATTGATTAGACTGGTTGACCAGGCCCCG-TGAAAAAACACTGGGTCCATAGAGTTCATTGGGATTTGAAGGGTCAACGGTCTAATCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691829" ref_strand="+" ref_description="SGN-E691829 [LH_Ea07C03]">
      <seq>cgcgtctcgtgccgaattcggcacgagggaagaatcgggagttaatgcaactacatggagaagagctgcaaggacttgggttggatgaattaatgaaattggagaaattagtcgagggaggaataagtcgtgtcctcaaaattaagggtgacaagtttatgaaagagatcagttccctcaagaaaaaggaagctaaactccaggaagagaattcactgttgaaaaagcaatcacaagcaagattgaatgaagggcaaaatgtaattgagcaaggacattcagcagactccatcaccaacaatcgcagcttagtcaatgactcagatactagtctcaagttatgcttggcttttccttagtgagctccatccatatgaaaatgggagataatatagttactcaaacaagggcgagtaattttctagtatttattatggatcataatatagtgaaatgtataaaattgattagactggttgaccaggccccgtgaaaaaacattgggaccatagagttcattgggattcgaagggtcaacggtctaatcagagagtcatgtgatatttagctaggtgctatgtattaatctatttaaagaatcaacttaaatatatgtatttattagcagtaatttctttgattattcaagaagcaccaatctttaattagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="109015" stop="112238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109321" g_stop="109337" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="46" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109338" i_stop="109849" i_length="512">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109850" g_stop="109949" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="146" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109950" i_stop="110564" i_length="615">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110565" g_stop="110606" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="188" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110607" i_stop="111283" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111284" g_stop="111331" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="236" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111332" i_stop="111413" i_length="82">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111414" g_stop="111523" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="343" r_length="107" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111524" i_stop="111609" i_length="86">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111610" g_stop="111946" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="679" r_length="336" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E691829" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109321" e_stop="109337"/>
          <exon e_start="109850" e_stop="109949"/>
          <exon e_start="110565" e_stop="110606"/>
          <exon e_start="111284" e_stop="111331"/>
          <exon e_start="111414" e_stop="111523"/>
          <exon e_start="111610" e_stop="111946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCGGGAGTTAAGGTAATTGTTGGTTTTATTTGAAGCATGATTCATAATTTAATGTGCCTATTATTGTAAAGTCTGTAATTAAAGATGTATCCAATTTTTTGTTGGACAGATTATAGATGCAATTTTAATCTATAAAATACTTTCTTCATCCATCTTTATTTGTTCATTCTATTATTTTGGAATGTCCAACAATACTTGTCCAGTTTATAAAATCGATAAATAGTTTACCAAGTTATGTCTATTTTATCCTTACTATTATATTTAGATGGCTTATATTTAGTAAGGGTGATTTGGTAAAAATATCTATATCATTTATGCTTCTTAAATCACTAAGAGAAATTGATAATAATGAGCAACTATTGTTGGACAAATGACATTATACATATTATTTATGTTCTACAATTAGAGATACCCTTCATTGTTAATTGTTGCATCTCATTATACATATCTTGGTGCTGCAAAAGTTTGCCTAATTGTAGTAATAATTACTTTCAAATTTCAACTTATATGACTTATTATGCTAGGCAACTACATGGAGAAGAGCTGCAAGGACTTGGTTTGGATGAATTAATGAAATTGGAGAAATTAGTCGAGGGAGGAATAAGTCGTGTCCTCAAAATTAAGGTCCTATTTACTTAATTCCCTTCTTCCTATTTTAAAATTGCTTAGTCTTCGTCTCTTATTCTTCAATGTGTATTATTATATATTTTTGTATTTGCTTTTATATCTTTTGCTGTTGTATTTTCTTGGAATCATGCTTCAAAAAATATTTCTTTGAGCTGAGAGTCTATATCGCAAATAGTCTCTCTATCCCTCAAAGATAAAAGTATTGTTCGCATATATTTTACTCTTTTTGTACCTCACTTGTAAAATTACACCAGATATGTTGTTGTTTTCTACTTAATTTCCCTCCTCATTTGCACTTGTGTGATTAATACTCCCTTTCCTTATTAGTTGATCATTATACTAAATGTAATTGTCTCGTATTAGTTGATCACCTTAGTAAATCCAAAAACATCTTTTTTTATATTATTCATGCAATTCATTTTTTTTAAAGTGTTCATAATTGTGTATAAATTTCTCAAATAGTTTTTTAAAGGATTAATTAGTATAATTACCTTCTTATTTATAATTTCTTAAGCGTTGTGCAAAATGAAAAGTAAACAACTAATATGAGATCGAAAGGAGTATATAATTGGTCCTACAACATGCATTGATTCCATTAACTTGCGTTTTCAGGGTGACAAGTTTATGAAAGAGATCAGTTCCCTCAAGAAAAAGGCAAGTCATGCATTAACTGATTGAATGTTGATTTCTCAGTACAACTTTCTTTTACTTAATTAGGAAATACTATTTGATTCTTCAGCAACTTAAGTTGACAGGAATTCCAATGTGGTTTTTGGAAGACAATTATAGGGAAAAATATGTCCAGATTATGTATAATATGGAGAATTAAGTTCTTGAGTACTTTTGGGATATGCATAAGTACCCCATCAAAATTTCAGTGATACCTAAATTTAATAGGTTTCTATTATTCCAAACTCATTTTTAAAAATATTTTCATGCACCTTTTATATTCACTGTGACACCTTCAACCAACTAAATAGATTATGTTTGTACAGCACGAGCATGCCAGGTGAAAAAACCACTTAGTTTAACAATTTTAGTCTGTTCTGTTCTTACCCTTCAAAAATAATGTCATATTTTCTCTTGCCGTTCGAACAAGATAACAAGGGACGTTAAGGTGACGTGGTAGAGGTGATACCCATCACGTGTGTCAAAGGAGATGGCGGTTGATTAATTGCTTCAAGCATTGGATAAGTGATGTTTATGTGTCAATACCCTTCAATTTTTGTCTTAGGGTTTAAAGTGATTTAAAAATAATTTTGATCAACCACTAGAAAAGGATATATATAATAATATTTCATGGCATCTTATAAGTAGCTCTCAATATGCAGGAAGCTAAACTCCAGGAAGAGAATTCACAGTTGAAAAAGCAATCACAAGTAAATTATTCTGCAATTAATTGTATTTTTGGCATAATTTGTTTAATGAATTACTCCCTAAGTCACATTAATTCATGAGCAGGCAAGATTGAATGAAGAAGGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACGAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATGGTACGTATCCAAATCCTAAACTCTGAACCCTAAATCCTAACATTTTTCACGTCTAATTTGTTATTTATACACGTTTATCTTTGCAGCTTGGCTTTTCCTTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTCTAATATTTATTATGGATCATAATATAGTGAAATGTATAAAATTGATTAGATTGGTTGATCAGGCTCCGTTAAAAAAACATTGGGACCATAGAGTTCATTGAGAATCAAAGGGTCAACAGTCTAATCAGAGAGTCATGTGATATTTAGCTAGGTGCTATGTATTAATCTATTTAAAGAATCAACTTAAATATATGTATTTATTAGCAGTAATTTCTTTGATTATTCAAGAAGCACCAAACTTTAATTAGAATTCATATC</genome_strand>
        <mrna_strand>AAGAATCGGGAGTTAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTACATGGAGAAGAGCTGCAAGGACTTGGGTTGGATGAATTAATGAAATTGGAGAAATTAGTCGAGGGAGGAATAAGTCGTGTCCTCAAAATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACAAGTTTATGAAAGAGATCAGTTCCCTCAAGAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTAAACTCCAGGAAGAGAATTCACTGTTGAAAAAGCAATCACAA..................................................................................GCAAGATTGAAT---GAAGGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACCAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATG......................................................................................CTTGGCTTTTCCTTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTCTAGTATTTATTATGGATCATAATATAGTGAAATGTATAAAATTGATTAGACTGGTTGACCAGGCCCCG-TGAAAAAACATTGGGACCATAGAGTTCATTGGGATTCGAAGGGTCAACGGTCTAATCAGAGAGTCATGTGATATTTAGCTAGGTGCTATGTATTAATCTATTTAAAGAATCAACTTAAATATATGTATTTATTAGCAGTAATTTCTTTGATTATTCAAGAAGCACCAATCTTTAATTAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695220" ref_strand="+" ref_description="SGN-E695220 [LH_Ea05P10](-)">
      <seq>aggaataagtcctgtcctcaaaattaagggggacaagtttacgaaagagatcagttccctccagaaaaaggaagctaaactccaggaagagaattcactgttgaaaaagcaatcactagcaagattgactgaagggcacaatgtaattgagcaaggacattcagcagactccatcaccaacaatcgcagcttagtcaatgactcagatactagtctcaagttatgcttggcttttccttagtgagctccatccatatgaaaatgggagataatatagttactcaaacaagggcgagtaattttttagtatttattagggatcataatatagtgaaatgtataaaattcattagtctggttggccaggccccgtgaaaaaacattgggaccatagagttcattgggatttgaagggtcaacggtctaatcagagagtcatgtgatatttagctaggtgctatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="109622" stop="112148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109922" g_stop="109949" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109950" i_stop="110564" i_length="615">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110565" g_stop="110606" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="70" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110607" i_stop="111283" i_length="677">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.951" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111284" g_stop="111331" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="118" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111332" i_stop="111413" i_length="82">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111414" g_stop="111523" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="225" r_length="107" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111524" i_stop="111609" i_length="86">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111610" g_stop="111848" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="463" r_length="238" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E695220" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109922" e_stop="109949"/>
          <exon e_start="110565" e_stop="110606"/>
          <exon e_start="111284" e_stop="111331"/>
          <exon e_start="111414" e_stop="111523"/>
          <exon e_start="111610" e_stop="111848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATAAGTCGTGTCCTCAAAATTAAGGTCCTATTTACTTAATTCCCTTCTTCCTATTTTAAAATTGCTTAGTCTTCGTCTCTTATTCTTCAATGTGTATTATTATATATTTTTGTATTTGCTTTTATATCTTTTGCTGTTGTATTTTCTTGGAATCATGCTTCAAAAAATATTTCTTTGAGCTGAGAGTCTATATCGCAAATAGTCTCTCTATCCCTCAAAGATAAAAGTATTGTTCGCATATATTTTACTCTTTTTGTACCTCACTTGTAAAATTACACCAGATATGTTGTTGTTTTCTACTTAATTTCCCTCCTCATTTGCACTTGTGTGATTAATACTCCCTTTCCTTATTAGTTGATCATTATACTAAATGTAATTGTCTCGTATTAGTTGATCACCTTAGTAAATCCAAAAACATCTTTTTTTATATTATTCATGCAATTCATTTTTTTTAAAGTGTTCATAATTGTGTATAAATTTCTCAAATAGTTTTTTAAAGGATTAATTAGTATAATTACCTTCTTATTTATAATTTCTTAAGCGTTGTGCAAAATGAAAAGTAAACAACTAATATGAGATCGAAAGGAGTATATAATTGGTCCTACAACATGCATTGATTCCATTAACTTGCGTTTTCAGGGTGACAAGTTTATGAAAGAGATCAGTTCCCTCAAGAAAAAGGCAAGTCATGCATTAACTGATTGAATGTTGATTTCTCAGTACAACTTTCTTTTACTTAATTAGGAAATACTATTTGATTCTTCAGCAACTTAAGTTGACAGGAATTCCAATGTGGTTTTTGGAAGACAATTATAGGGAAAAATATGTCCAGATTATGTATAATATGGAGAATTAAGTTCTTGAGTACTTTTGGGATATGCATAAGTACCCCATCAAAATTTCAGTGATACCTAAATTTAATAGGTTTCTATTATTCCAAACTCATTTTTAAAAATATTTTCATGCACCTTTTATATTCACTGTGACACCTTCAACCAACTAAATAGATTATGTTTGTACAGCACGAGCATGCCAGGTGAAAAAACCACTTAGTTTAACAATTTTAGTCTGTTCTGTTCTTACCCTTCAAAAATAATGTCATATTTTCTCTTGCCGTTCGAACAAGATAACAAGGGACGTTAAGGTGACGTGGTAGAGGTGATACCCATCACGTGTGTCAAAGGAGATGGCGGTTGATTAATTGCTTCAAGCATTGGATAAGTGATGTTTATGTGTCAATACCCTTCAATTTTTGTCTTAGGGTTTAAAGTGATTTAAAAATAATTTTGATCAACCACTAGAAAAGGATATATATAATAATATTTCATGGCATCTTATAAGTAGCTCTCAATATGCAGGAAGCTAAACTCCAGGAAGAGAATTCACAGTTGAAAAAGCAATCACAAGTAAATTATTCTGCAATTAATTGTATTTTTGGCATAATTTGTTTAATGAATTACTCCCTAAGTCACATTAATTCATGAGCAGGCAAGATTGAATGAAGAAGGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACGAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATGGTACGTATCCAAATCCTAAACTCTGAACCCTAAATCCTAACATTTTTCACGTCTAATTTGTTATTTATACACGTTTATCTTTGCAGCTTGGCTTTTCCTTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTCTAATATTTATTATGGATCATAATATAGTGAAATGTATAAAATTGATTAGATTGGTTGATCAGGCTCCGTTAAAAAAACATTGGGACCATAGAGTTCATTGAGAATCAAAGGGTCAACAGTCTAATCAGAGAGTCATGTGATATTTAGCTAGGTGCTATGT</genome_strand>
        <mrna_strand>AGGAATAAGTCCTGTCCTCAAAATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGACAAGTTTACGAAAGAGATCAGTTCCCTCCAGAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTAAACTCCAGGAAGAGAATTCACTGTTGAAAAAGCAATCACTA..................................................................................GCAAGATTGACT---GAAGGGCACAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACCAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATG......................................................................................CTTGGCTTTTCCTTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTTTAGTATTTATTAGGGATCATAATATAGTGAAATGTATAAAATTCATTAGTCTGGTTGGCCAGGCCCCG-TGAAAAAACATTGGGACCATAGAGTTCATTGGGATTTGAAGGGTCAACGGTCTAATCAGAGAGTCATGTGATATTTAGCTAGGTGCTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693606" ref_strand="+" ref_description="SGN-E693606 [LH_Ea01M04](-)">
      <seq>agagatcagttccctcaagaaaaaggaagctaaactccaggaagagaattcactgttgaaaaagcaatcacaagcaagattgaatgaagggcaaaatgtaattgagcaaggacattcagcagactccatcaccaacaatcgcagcttagtcaatgactcagatactagtctcaagttatgcttggcttttccttagtgagctccatccatatgaaaatgggagataatatagttactcaaacaagggcgagtaattttttagtatttattatggatcataatatagtgaaatgtataaaattgattagactggttgaccaggccccgtgaaaaaacattgggaccatagagttcattgggattggaagggtcaacggtctaatcagagagtcatgtgatataaaggtaggtgctatgtattaatctattaaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="110282" stop="112170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110582" g_stop="110606" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110607" i_stop="111283" i_length="677">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111284" g_stop="111331" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="73" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111332" i_stop="111413" i_length="82">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111414" g_stop="111523" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="180" r_length="107" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111524" i_stop="111609" i_length="86">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111610" g_stop="111880" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="449" r_length="269" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E693606" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110582" e_stop="110606"/>
          <exon e_start="111284" e_stop="111331"/>
          <exon e_start="111414" e_stop="111523"/>
          <exon e_start="111610" e_stop="111880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATCAGTTCCCTCAAGAAAAAGGCAAGTCATGCATTAACTGATTGAATGTTGATTTCTCAGTACAACTTTCTTTTACTTAATTAGGAAATACTATTTGATTCTTCAGCAACTTAAGTTGACAGGAATTCCAATGTGGTTTTTGGAAGACAATTATAGGGAAAAATATGTCCAGATTATGTATAATATGGAGAATTAAGTTCTTGAGTACTTTTGGGATATGCATAAGTACCCCATCAAAATTTCAGTGATACCTAAATTTAATAGGTTTCTATTATTCCAAACTCATTTTTAAAAATATTTTCATGCACCTTTTATATTCACTGTGACACCTTCAACCAACTAAATAGATTATGTTTGTACAGCACGAGCATGCCAGGTGAAAAAACCACTTAGTTTAACAATTTTAGTCTGTTCTGTTCTTACCCTTCAAAAATAATGTCATATTTTCTCTTGCCGTTCGAACAAGATAACAAGGGACGTTAAGGTGACGTGGTAGAGGTGATACCCATCACGTGTGTCAAAGGAGATGGCGGTTGATTAATTGCTTCAAGCATTGGATAAGTGATGTTTATGTGTCAATACCCTTCAATTTTTGTCTTAGGGTTTAAAGTGATTTAAAAATAATTTTGATCAACCACTAGAAAAGGATATATATAATAATATTTCATGGCATCTTATAAGTAGCTCTCAATATGCAGGAAGCTAAACTCCAGGAAGAGAATTCACAGTTGAAAAAGCAATCACAAGTAAATTATTCTGCAATTAATTGTATTTTTGGCATAATTTGTTTAATGAATTACTCCCTAAGTCACATTAATTCATGAGCAGGCAAGATTGAATGAAGAAGGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACGAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATGGTACGTATCCAAATCCTAAACTCTGAACCCTAAATCCTAACATTTTTCACGTCTAATTTGTTATTTATACACGTTTATCTTTGCAGCTTGGCTTTTCCTTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTCTAATATTTATTATGGATCATAATATAGTGAAATGTATAAAATTGATTAGATTGGTTGATCAGGCTCCGTTAAAAAAACATTGGGACCATAGAGTTCATTGAGAATCAAAGGGTCAACAGTCTAATCAGAGAGTCATGTGATATTTAGCTAGGTGCTATGTATTAATCTATTTAAAGAATCAACTTAAATATA</genome_strand>
        <mrna_strand>AGAGATCAGTTCCCTCAAGAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTAAACTCCAGGAAGAGAATTCACTGTTGAAAAAGCAATCACAA..................................................................................GCAAGATTGAATG-A-A-GGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACCAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATG......................................................................................CTTGGCTTTTCCTTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTTTAGTATTTATTATGGATCATAATATAGTGAAATGTATAAAATTGATTAGACTGGTTGACCAGGCCCCG-TGAAAAAACATTGGGACCATAGAGTTCATTGGGATTGGAAGGGTCAACGGTCTAATCAGAGAGTCATGTGATATAAAGGTAGGTGCTATGTATTAATCTA-TTAAAGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E744708" ref_strand="+" ref_description="SGN-E744708 [GI|8439464]">
      <seq>cattgttctcggaaccggactcaaagaatgcattctcagcggccttctctccgtcgacggcctcaaagtactacacatggataaaaatgactattatggaggagagtcaagctcacttaatttaattcagctttggaaacggtttaggggaaatgaccagccaccagaagagttgggtacgagcaaggaatacaacgttgacatgattccaaagtttgcaatggcaaatggaactctggttcgtgtgcttatccacactgatgttaccaagtacttgaacttcaaggctgtagatggtagttttgtgtacaataaagggaagatctacaaagttccagcaactgatgttgaagctctgaaatccccattgatggggctctttgaaaagcgtcgagctcggaagttttttctttatgtgcaagattttgaagagactgatccgaaaactcatgaagggatggatttgaacaaaatcactgcaaaagaattcattgcgaaatatgaactcgaagatgataccattgactttattggacatgccttggcactctgtacagatgataactatttggcccaaccagctatggatttcataaagagagtaaagctttatgcagagtctttagcacgctttcaagcaggatccccctatatttatccattgtacggactgggtgaattaccacaggcatttgcacgcctgagtgcagtttatggtggaacttacatgcttaacaagccacagtgtaaggtagagtttgatgacggtgggaaagttgttggtgtgacttctgaaggagaaactgccaaatgcaagaaagttgtttgtgatccctcatatttacctgataaggtccagaaggttggaaaagttgcccgtgcaatttgtataatgagccatcccatcccaaacaccaatgattctcattcagcccaggtcattctaccgcagaagcaactcggtcgcaaatcagacatgtacctgttctgttgttcctactcccacaatgtcgctccaaaaggcaaatatattgcttttgtctcaacagaagctgaaaccgatgaccctgagagcgaactgaagcctggcgtagacatacttggggcggtcgatgagatattttatgaaacttatgacagattcataccttcacatgactctgctgctgataattgtttcatatctaaaagctatgattcaacaacacactttgagtccacagtgatggatgtgctagacatgtacagcaagataacgggaaaggtcattgatttatcagtggacctgagtgctgcaagtgctactgctgaagaataagcttattgtatccacttcatatgtatgctgcaaaataagtcagtagaagccaattttgtattgaagaatattttcagttatcaactccctagctagttggttcctaaaatggaccttattggaggcaagaacttgctttatgtgtatttttcatgtcccttatagttctctaatgatttaacttttggaaaggtttaggaatagtttctatgaatcctttccattactatgtactgatttcatattccatcttgtaaggatttcataatttgtattttgtcaaaaggatgatgatgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="112686" stop="119115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112986" g_stop="113052" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113053" i_stop="113546" i_length="494">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113547" g_stop="113609" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="130" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113610" i_stop="113800" i_length="191">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113801" g_stop="113884" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="214" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113885" i_stop="114587" i_length="703">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114588" g_stop="114695" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="322" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114696" i_stop="114794" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114795" g_stop="114967" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="495" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114968" i_stop="115087" i_length="120">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115088" g_stop="115199" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="607" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="115200" i_stop="116197" i_length="998">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="116198" g_stop="116278" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="688" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="116279" i_stop="116361" i_length="83">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="116362" g_stop="116424" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="751" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="116425" i_stop="116757" i_length="333">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="116758" g_stop="116859" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="853" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="116860" i_stop="117013" i_length="154">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="117014" g_stop="117138" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="854" r_stop="978" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="117139" i_stop="117438" i_length="300">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="117439" g_stop="117649" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="979" r_stop="1189" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="117650" i_stop="118140" i_length="491">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="118141" g_stop="118215" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1190" r_stop="1264" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="118216" i_stop="118460" i_length="245">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="118461" g_stop="118815" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1265" r_stop="1619" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E744708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112986" e_stop="113052"/>
          <exon e_start="113547" e_stop="113609"/>
          <exon e_start="113801" e_stop="113884"/>
          <exon e_start="114588" e_stop="114695"/>
          <exon e_start="114795" e_stop="114967"/>
          <exon e_start="115088" e_stop="115199"/>
          <exon e_start="116198" e_stop="116278"/>
          <exon e_start="116362" e_stop="116424"/>
          <exon e_start="116758" e_stop="116859"/>
          <exon e_start="117014" e_stop="117138"/>
          <exon e_start="117439" e_stop="117649"/>
          <exon e_start="118141" e_stop="118215"/>
          <exon e_start="118461" e_stop="118815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTTCTCGGAACCGGACTCAAAGAATGCATTCTCAGCGGCCTTCTCTCCGTCGACGGCCTCAAAGTATTTTTATTTCATTTTTAATCTAATTAGCAATCATTATACTAATTCTAGTTTCTCTGTAATAGTTAGAGACGGAGCTAGAATTTCAACTTTTTGATTACATTTTGAAGTTGAAACTTGAAATTGTGGTTTTTGGAATTTTAAGTTATGTTTGGACCGGTTACTTGAAACAAATATTTAAATTTTCAAATTTTGATCCAAAATAGGTGTTAATAATTGGATTGTTTGAGCAAAGTTTACTTCTGAGAAGAGCAGAACTATTCATGATAAAGAAAAAGAAAGTGAATCCTTTTTCCCAGAGGATCTCTAGTAACTGGATTTGGTAGACAATTTGTGATGTCTACCAGAGTTTAGATTATCAATCGATCGAACTATTTATAAGTTAATAGTCTGCTTAGGGTTGTCCCAACTTTACATGTATTTTAGTTCAGATCCTTATACATCTTCATGTGGTTTCTAAAATCGATCACTATCTAACCTCTAAATGTCTTCAGGTACTACACATGGATAAAAATGACTATTATGGAGGAGAGTCAAGCTCACTTAATTTAATTCAGGTAACCTATTTAGTATTTACTAATGGCATGGAACTTAATTGCGCAAACAACTTTGAAATGCTCATCACTCTTCAGTCTCGATCCTGAGAGAGGACTGGAAATGAGGCGTAAATGGAAGTGTGGCATAAGTTAGTGCTAGTTTCATTTTGGTACTTGGAGTTAATCTCAGCATGTCATGTGTTTTTGTGTAGCTTTGGAAACGGTTTAGGGGAAATGACCAGCCACCAGAAGAGTTGGGTACGAGCAAGGAATACAACGTTGACATGATTCCAAAGGTGAATTTTGATAGTATTATTATTTATCTTTCCATTACCTAAAATTTTCCAGTTTACTACTCAATTTCTTGACTTTTGATTCTGGTTTCTTCCCCTTTCCTGGAGGAAGATTTAAGCTGGTATCGAATGAAATAAACTTATTCACATAACTGTAGGTTCTGCTCGACAGTAAAAGTCTTATTTCTGTCCATAAAGGAGCATGGGCTCTAAAATTATATCCAGTTCAAAGAAATTTCGGCTTTAAGATAGGAATGAGTTAGGTTACTGCAGAGGTTCCACCAAAGAGACACAACTTATGACATGCTTAGATATCTAAGGAGTATATCCACTCATTCCATCTGATCATACAATTATGAAGGTTGCCTATATTGGAGAAGTTATGATGTGTAGAAAATTATCTAAATAGGCATGTAGAAACATGCACAATAATTTAAAGGAATTGAAACCCAGATGCACTGGTGCTATTAGAGAGTAGGCTCTCCTTTATGTAAGTTCGCAAAATATTTAACTCCCTGTTGATGACAGATTACTTCATCAAAGGGTCAGAAAATATAGAAGTAAAGATATTGGGCTTGAAAGAGTTCTGTTGTTAACATGACAATTTCCAAACTGTATTAGGTTGAGTTGATTATTGACCTTTATAGATCTATATGAAATGCTTTACAAGTATGTTATATTTATTTCTTTTCCTGATGTCCTGTAGTTTGCAATGGCAAATGGAACTCTGGTTCGTGTGCTTATCCACACTGATGTTACCAAGTACTTGAACTTCAAGGCTGTAGATGGTAGTTTTGTGTACAATAAAGGGAAGGTATGTTTGTTAAAGCACTATGACGTGTACCTTCTGATCTGTTTTTTTTTCTGGGTAGAAGATTCTCACTTAAATTTCTTGTGAAACTGATATCATTAGATCTACAAAGTTCCAGCAACTGATGTTGAAGCTCTGAAATCCCCATTGATGGGGCTCTTTGAAAAGCGTCGAGCTCGGAAGTTTTTTCTTTATGTGCAAGATTTTGAAGAGACTGATCCGAAAACTCATGAAGGGATGGATTTGAACAAAATCACTGCAAAAGAATTCATTGCGTAATTTTCTTTCCACGTGTGCTTTTATAGTCTTGCTTGAACATATTGGTGATGGCTGCATCCATAATGAATTATAGTTAGACAGTTTCTTCCACACCTTGGTAACTGTTGTTTATGCAGGAAATATGAACTCGAAGATGATACCATTGACTTTATTGGACATGCCTTGGCACTCTGTACAGATGATAACTATTTGGCCCAACCAGCTATGGATTTCATAAAGAGAGTAAAGGTGAGTTTGACTTTATCAATTTAGTATTGCCAAAAGTATATAATTGTTTAATAAAGATATCATCGCTAACGTAGTTTACTCACATTGACATGACAGTGTAAAATTTTGGTTTGTGATTGCTGATGAGCTAGGTCTAACTTATTCTAGTTACTAAAGCTGATTGAAAGCTTGTATAGGCGTCTGTTATTCCATGACCATGAGGAAGAAAAGAAGAAATTTAGGAAGTTACAAATATTCCATGTTATATATATAGGTAGTGTAGGGCTTCCTACGAATTTTATTCATGTGATCAACAGAAATTCCGCATGCTTTAAGTATTTATATGGCATTGTCTTTTATGTCCACCACCAACTCTCTTCGCTTATTAGACTCTGGGTTAGCTATTAATTGTATACCTCCTGTGGCTGTATATGTAATGTCATATTACTAGATGAAGTAAATCTTCTACATTTTCAGATAGCTAGAAGGAATCAATATGGTCTTGCCTACTGATACCGTAAATCAGAAAATGCAGCTTTTTAGTTTTATTATTTATTTATGATTAGATTTGATTTCAATGTCAAGACATCAGCCTTATTTATTCTCTTTTGTGTTTCTACTTTCTTGGCATGGACTGAAGACCTTTAAATCTAACGTAATAGCGTTAAGCAAAATAGAGTGTTGATATAATCCTATGATCTAAGATTTGTCCTACAGTATGATTAATTCATGAGTAGTCAACTGATACTTCCACGGTAGGTCTTCAATTAACGAATTATCACAATCAAGATTATAATTGAAATGCCAAATGCATGTGCTGTGTGATGTTAACTCCTCTTCCTTTCATATGAATAGAACTATTTTTCGTAACTCATAAGAAGCCAAATTCTTCGATTACATAAGCTAAGATATGCTTTCTTATTTTTGAGATAAAATAGGTTTGGAACTTATTTGTTACTATCGGAGTTACATGTTTAAAGAATTACTTAATAAGTACTTTGTTCTCTTGTTTTTTCAAGCTTTATGCAGAGTCTTTAGCACGCTTTCAAGCAGGATCCCCCTATATTTATCCATTGTACGGACTGGGTGAATTACCACAGGTTTGTTTCACTGGGTATTTTGTGTCCATCGTGTTTGGGTAAAAAAAAATTTCCTATTATTTGATTGGTGTACATGCTGTCAGGCATTTGCACGCCTGAGTGCAGTTTATGGTGGAACTTACATGCTTAACAAGCCACAGTGTAAGGTAATCACCCCAACCATCTCTAGCTCATTTCAATGCTTAACGATCCCTATATAAGGTTAAGTTTTGCAAATGTTTTAGCAACCAGAATGCGTCTCGCTAATCTTTCTAATCTAACATGTAGGCCTCTTTTTGCCTTAAAAGAAATTCTAAATGTAATCTGGATCAGATATCCTCATGTTGTACATTTAAGTATACCATATTAGCTTACAAAGAAAACTGAGACAATAATGCACTGAGCTCTGCTCTACTTAAAATGCTGAAAAATTCCACATGGCTTACATACACATTGAATTAAATTGAAGTTTATGTGAAGACTCAGTTTCTGTATTGCAGGTAGAGTTTGATGACGGTGGGAAAGTTGTTGGTGTGACTTCTGAAGGAGAAACTGCCAAATGCAAGAAAGTTGTTTGTGATCCCTCATATTTACCTGATAAGGTACTATTGGCAAATTGCGAATAACTAATATGTCCAGGCTTTCTGCATCACTGACTCATGTCTTTGAAATTTGCTTAATCACCTGCATAGCTGAAAAAAAGACCAGATTAACAATTTCTACTGACAAATGATTTAATACCAATACATAATGCAGGTCCAGAAGGTTGGAAAAGTTGCCCGTGCAATTTGTATAATGAGCCATCCCATCCCAAACACCAATGATTCTCATTCAGCCCAGGTCATTCTACCGCAGAAGCAACTCGGTCGCAAATCAGACATGTATGTTTAGGGTTCCAGATAGTGTACTGAATTATCATATCCTATAGTGTGGTTTTAAAGGGATACCATTGACGGTGCAAGCTTTCTGCTCTAAAAATAAGATTATAAAACATACAAATTTGACCTTACTTTTTATATGTCAATGATGAGTAATTGAAGTCCTCTTTTCTCCAAACAATTATTGAGAAGTGACTGTCACTATTTATTTAGTCCTAGACTACATGCTCAGTAAACCTGTTGTGCTGTTGGTAGAAACTTGAAAGATAATTCAGAGTGACTTATTCTACATGTCGGTTACAGGTACCTGTTCTGTTGTTCCTACTCCCACAATGTCGCTCCAAAAGGCAAATATATTGCTTTTGTCTCAACAGAAGCTGAAACCGATGACCCTGAGAGCGAACTGAAGCCTGGCGTAGACATACTTGGGGCGGTCGATGAGATATTTTATGAAACTTATGACAGATTCATACCTTCACATGACTCTGCTGCTGATAATTGTTTCATATCTAAAGTAAGTTCCAATTAGCTGGTAGTGTCTACTCTATTTGTACAACTATTTCATCACAAATATATCACAAAAGAGATATGACTGTGTTATTACTTGTTAATTAGAAAACATTGTATGCTTATGTTCCCAAAATTCTGTAGAAGAATTACTGAAAACAGACAGGGCACTTTGATTTTACTTCTTTGACATGCTGAACCTTGCCCCATATTATGTGAGATTACTGCTACTCAAAGGAACCGTTCTTCATAATCTAGTAATGTCACTAAGGCTGGAAAAGAATATAACAGTAATGGCTTTCAAGCTTAGCATGCCTTCTCTTGCATTCATGGTCTAACATATGCATAGTCCTTACGACATAAATCAAACTTCTAAAGTTCAAAAACTCTATGGTAGACTTCTTTCCTGCCATCCAAATGTGTCTCATACATTGGTCAGCAGTTCATTGTCAAAATTTGTTTTCTTGTTTAATAATCCTGTTTAATCCTTCCTTGTAGAGCTATGATTCAACAACACACTTTGAGTCCACAGTGATGGATGTGCTAGACATGTACAGCAAGATAACGGGAAAGGTAAGATTCCAGTTTGGAATTTAGTTATCTGGTGACTTGTCGTTTGACAATGCGCAGCAGTTTCATAATATATATATATCAACCACTCTGCCAAGCATACTACTGTTTGAATATTGAAGCTACCTAGCACAACGTTGCTGGTGAAAAAAGGGGTTCTAATCTTCTACAGTTTGACAAATATATCTTCTCTCTTTCAACCTCATGTGAATGATTCTGAGTGTAATGACATATATATTTTTGTCTAGGTCATTGATTTATCAGTGGACCTGAGTGCTGCAAGTGCTACTGCTGAAGAATAAGCTTATTGTATCCACTTCATATGTATGCTGCAAAATAAGTCAGTAGAAGCCAATTTTGTATTGAAGAATATTTTCAGTTATCAACTCCCTAGCTAGTTGGTTCCTAAAATGGACCTTATTGGAGGCAAGAACTTGCTTTATGTGTATTTTTCATGTCCCTTATAGTTCTCTAATGATTTAACTTTTGGAAAGGTTTAGGAATAGTTTCTATGAATCCTTTCCATTACTATGTACTGATTTCATATTCCATCTTGTAAGGATTTCATAATTTGTATTTTGTCAAAAGGATGATGATGAAACT</genome_strand>
        <mrna_strand>CATTGTTCTCGGAACCGGACTCAAAGAATGCATTCTCAGCGGCCTTCTCTCCGTCGACGGCCTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACACATGGATAAAAATGACTATTATGGAGGAGAGTCAAGCTCACTTAATTTAATTCAG...............................................................................................................................................................................................CTTTGGAAACGGTTTAGGGGAAATGACCAGCCACCAGAAGAGTTGGGTACGAGCAAGGAATACAACGTTGACATGATTCCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAATGGCAAATGGAACTCTGGTTCGTGTGCTTATCCACACTGATGTTACCAAGTACTTGAACTTCAAGGCTGTAGATGGTAGTTTTGTGTACAATAAAGGGAAG...................................................................................................ATCTACAAAGTTCCAGCAACTGATGTTGAAGCTCTGAAATCCCCATTGATGGGGCTCTTTGAAAAGCGTCGAGCTCGGAAGTTTTTTCTTTATGTGCAAGATTTTGAAGAGACTGATCCGAAAACTCATGAAGGGATGGATTTGAACAAAATCACTGCAAAAGAATTCATTGC........................................................................................................................GAAATATGAACTCGAAGATGATACCATTGACTTTATTGGACATGCCTTGGCACTCTGTACAGATGATAACTATTTGGCCCAACCAGCTATGGATTTCATAAAGAGAGTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATGCAGAGTCTTTAGCACGCTTTCAAGCAGGATCCCCCTATATTTATCCATTGTACGGACTGGGTGAATTACCACAG...................................................................................GCATTTGCACGCCTGAGTGCAGTTTATGGTGGAACTTACATGCTTAACAAGCCACAGTGTAAG.............................................................................................................................................................................................................................................................................................................................................GTAGAGTTTGATGACGGTGGGAAAGTTGTTGGTGTGACTTCTGAAGGAGAAACTGCCAAATGCAAGAAAGTTGTTTGTGATCCCTCATATTTACCTGATAAG..........................................................................................................................................................GTCCAGAAGGTTGGAAAAGTTGCCCGTGCAATTTGTATAATGAGCCATCCCATCCCAAACACCAATGATTCTCATTCAGCCCAGGTCATTCTACCGCAGAAGCAACTCGGTCGCAAATCAGACAT............................................................................................................................................................................................................................................................................................................GTACCTGTTCTGTTGTTCCTACTCCCACAATGTCGCTCCAAAAGGCAAATATATTGCTTTTGTCTCAACAGAAGCTGAAACCGATGACCCTGAGAGCGAACTGAAGCCTGGCGTAGACATACTTGGGGCGGTCGATGAGATATTTTATGAAACTTATGACAGATTCATACCTTCACATGACTCTGCTGCTGATAATTGTTTCATATCTAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATGATTCAACAACACACTTTGAGTCCACAGTGATGGATGTGCTAGACATGTACAGCAAGATAACGGGAAAG.....................................................................................................................................................................................................................................................GTCATTGATTTATCAGTGGACCTGAGTGCTGCAAGTGCTACTGCTGAAGAATAAGCTTATTGTATCCACTTCATATGTATGCTGCAAAATAAGTCAGTAGAAGCCAATTTTGTATTGAAGAATATTTTCAGTTATCAACTCCCTAGCTAGTTGGTTCCTAAAATGGACCTTATTGGAGGCAAGAACTTGCTTTATGTGTATTTTTCATGTCCCTTATAGTTCTCTAATGATTTAACTTTTGGAAAGGTTTAGGAATAGTTTCTATGAATCCTTTCCATTACTATGTACTGATTTCATATTCCATCTTGTAAGGATTTCATAATTTGTATTTTGTCAAAAGGATGATGATGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338256" ref_strand="+" ref_description="SGN-E338256 [cTOE-13-C8]">
      <seq>tcaggcgatccatcgtcgactatgacgaagacgagaagcgacagtcgaaaccctggcaagaataacgatctctctgttttcgattttagccctgaagatgaacgcattgagaaacgctctaaaaagttattgcaaacattcaaaattcaaaaacctaacaacaaattccattctcctatcgataagtattgctttctccgttgctgtacgtttctgcaaaaccctaatttactttacaaactctttttcttgtctttttaacaattattccaagaaattgagtcccatatggatatagcttcattatcttatatagttgatgcttttagtttatcatcgttttcgtcaaattgcatattctgagttggagttaagagaagggggaaagtagaaagaacaccaggagattgaaaagaagaggagtaacagtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0037D10-wJaUi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C01HBa0037D10.2" temp_strand="+" temp_description="C01HBa0037D10.2  AC233131.3 htgs_phase:3 submitted_to_sgn_as:C01HBa0037D10 upload_account_name:manual">
        <position start="122144" stop="123177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122444" g_stop="122877" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0037D10.2" gen_strand="+" ref_id="SGN-E338256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0037D10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122444" e_stop="122877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCGATCCATCGTCGACTATGACGAAGACGAGAAGCGACAGTCGAAACCCTGGCAAGAATAACGATCTCTCTGTTTTCGATTTTAGCCCTGAAGATGAACGCATTGAGAAACGCTCTAAAAAGTTATTGCAAACATTCAAAATTCAAAAACCTAACAACAAATTCCATTCTCCTATCGATAAGTATTGCTTTCTCCGTTGCTGTACGTTTCTGCAAAACCCTAATTTACTTTACAAACTCTTTTTCTTGTCTTTTTAACAATTATTCCAAGAAATTGAGTCCCATATGGATATAGCTTCATTATCTTATATAGTTGATGCTTTTAGTTTATCATCGTTTTCGTCAAATTGCATATTCTGAGTTGGAGTTAAGAGAAGGGGGAAAGTAGAAAGAACACCAGGAGATTGAAAAGAAGAGGAGTAACAGTGATG</genome_strand>
        <mrna_strand>TCAGGCGATCCATCGTCGACTATGACGAAGACGAGAAGCGACAGTCGAAACCCTGGCAAGAATAACGATCTCTCTGTTTTCGATTTTAGCCCTGAAGATGAACGCATTGAGAAACGCTCTAAAAAGTTATTGCAAACATTCAAAATTCAAAAACCTAACAACAAATTCCATTCTCCTATCGATAAGTATTGCTTTCTCCGTTGCTGTACGTTTCTGCAAAACCCTAATTTACTTTACAAACTCTTTTTCTTGTCTTTTTAACAATTATTCCAAGAAATTGAGTCCCATATGGATATAGCTTCATTATCTTATATAGTTGATGCTTTTAGTTTATCATCGTTTTCGTCAAATTGCATATTCTGAGTTGGAGTTAAGAGAAGGGGGAAAGTAGAAAGAACACCAGGAGATTGAAAAGAAGAGGAGTAACAGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>213</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6121" PGL_stop="7553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6121" e_stop="6348"/>
            <exon e_start="7016" e_stop="7130"/>
            <exon e_start="7205" e_stop="7553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.982"/>
          <exon-intron don_prob="0.992" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="6121" e_stop="6348" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6349" i_stop="7015" i_length="667"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7016" e_stop="7130" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.981">
            <gDNA_intron_boundary i_start="7131" i_stop="7204" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="7205" e_stop="7553" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6121" stop="6348"/>
              <exon start="7016" stop="7130"/>
              <exon start="7205" stop="7553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556422" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTCAATTTTGAAAATCAAAATTTGTGCTCTCCATCCGTCAGCCTTCGTCTAATCTGTCCGCCATTTTTGTCTACTTTGTCAGCCTTTGAAAATCAAAATTGTGCTCTCCGTCCGTCCGTCTTCGTCTAATCTGTCCGCCATTTTTGTCTACTCTGTCCGCCTTAAAAAATCAAATCGCCAATTTCGTCTACTCTGTCCGCCATTTTCGTCCAATATTCTTGAAAG : ATTGGGCAGCATTGGATGCATATAAAGACAAGAAAACTGGAGAACTTTTGGGTCCACAACATTCGTTTAATGTGGAGTTTGCTCAAGACAACATGCAACAAATAAGTGATAGCCT : TGATTGCGGACTATTCGTAGTTGTATATGCAGAATTCTGAGTGACAAAATCAACATGTCATGTAATAGTTTTAAGAGTAGCTATCTTCGCAAAAGATATGCGATTCTTTTATTGAAGTATGGTCTCGACAAGATGAATGCTGGATATGTTAGCAACAGTGATGACCCTTCAAGAATGAAGAATGTATTAAACCCATCATCTGAAGATGAAATTGTTAATGTAGGCTAGTTAGTTTTCAATGTTTGACTTTTTTTTATTTTCTGGAGTTGAACAAGATGTTTGAAGTATTTATTAACATAACAACACATATTGTTAAATTATGAAAGTGTTTTGATTTTTAAAATTATTT</gDNA_template>
            <first_frame> L  L  N  F  E  N  Q  N  L  C  S  P  S  V  S  L  R  L  I  C  P  P  F  L  S  T  L  S  A  F  E  N  Q  N  C  A  L  R  P  S  V  F  V  *  S  V  R  H  F  C  L  L  C  P  P  *  K  I  K  S  P  I  S  S  T  L  S  A  I  F  V  Q  Y  S  *  K  :  I  G  Q  H  W  M  H  I  K  T  R  K  L  E  N  F  W  V  H  N  I  R  L  M  W  S  L  L  K  T  T  C  N  K  *  V  I  A   : L  I  A  D  Y  S  *  L  Y  M  Q  N  S  E  *  Q  N  Q  H  V  M  *  *  F  *  E  *  L  S  S  Q  K  I  C  D  S  F  I  E  V  W  S  R  Q  D  E  C  W  I  C  *  Q  Q  *  *  P  F  K  N  E  E  C  I  K  P  I  I  *  R  *  N  C  *  C  R  L  V  S  F  Q  C  L  T  F  F  Y  F  L  E  L  N  K  M  F  E  V  F  I  N  I  T  T  H  I  V  K  L  *  K  C  F  D  F  *  N  Y   </first_frame>
            <second_frame>  F  S  I  L  K  I  K  I  C  A  L  H  P  S  A  F  V  *  S  V  R  H  F  C  L  L  C  Q  P  L  K  I  K  I  V  L  S  V  R  P  S  S  S  N  L  S  A  I  F  V  Y  S  V  R  L  K  K  S  N  R  Q  F  R  L  L  C  P  P  F  S  S  N  I  L  E  R :   L  G  S  I  G  C  I  *  R  Q  E  N  W  R  T  F  G  S  T  T  F  V  *  C  G  V  C  S  R  Q  H  A  T  N  K  *  *  P  :  *  L  R  T  I  R  S  C  I  C  R  I  L  S  D  K  I  N  M  S  C  N  S  F  K  S  S  Y  L  R  K  R  Y  A  I  L  L  L  K  Y  G  L  D  K  M  N  A  G  Y  V  S  N  S  D  D  P  S  R  M  K  N  V  L  N  P  S  S  E  D  E  I  V  N  V  G  *  L  V  F  N  V  *  L  F  F  I  F  W  S  *  T  R  C  L  K  Y  L  L  T  *  Q  H  I  L  L  N  Y  E  S  V  L  I  F  K  I  I  </second_frame>
            <third_frame>   S  Q  F  *  K  S  K  F  V  L  S  I  R  Q  P  S  S  N  L  S  A  I  F  V  Y  F  V  S  L  *  K  S  K  L  C  S  P  S  V  R  L  R  L  I  C  P  P  F  L  S  T  L  S  A  L  K  N  Q  I  A  N  F  V  Y  S  V  R  H  F  R  P  I  F  L  K   : D  W  A  A  L  D  A  Y  K  D  K  K  T  G  E  L  L  G  P  Q  H  S  F  N  V  E  F  A  Q  D  N  M  Q  Q  I  S  D  S  L :   D  C  G  L  F  V  V  V  Y  A  E  F  *  V  T  K  S  T  C  H  V  I  V  L  R  V  A  I  F  A  K  D  M  R  F  F  Y  *  S  M  V  S  T  R  *  M  L  D  M  L  A  T  V  M  T  L  Q  E  *  R  M  Y  *  T  H  H  L  K  M  K  L  L  M  *  A  S  *  F  S  M  F  D  F  F  L  F  S  G  V  E  Q  D  V  *  S  I  Y  *  H  N  N  T  Y  C  *  I  M  K  V  F  *  F  L  K  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6213" stop="6348"/>
                    <exon start="7016" stop="7130"/>
                    <exon start="7205" stop="7244"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKLCSPSVRLRLICPPFLSTLSALKNQIANFVYSVRHFRPIFLKDWAALDAYKDKKTGELLGPQHSFNVEFAQDNMQQISDSLDCGLFVVVYAEF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7208" stop="7432"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTIRSCICRILSDKINMSCNSFKSSYLRKRYAILLLKYGLDKMNAGYVSNSDDPSRMKNVLNPSSEDEIVNVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15541" PGL_stop="16909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15541" e_stop="15798"/>
            <exon e_start="16064" e_stop="16311"/>
            <exon e_start="16586" e_stop="16909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15541" e_stop="15798" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="15799" i_stop="16063" i_length="265"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16064" e_stop="16311" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16312" i_stop="16585" i_length="274"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16586" e_stop="16909" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15541" stop="15798"/>
              <exon start="16064" stop="16311"/>
              <exon start="16586" stop="16909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15541" stop="15798"/>
              <exon start="16064" stop="16311"/>
              <exon start="16586" stop="16896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15552" stop="15798"/>
              <exon start="16064" stop="16277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGAATAAAAGCTACTTATAAGAATATGAAAAGCGTGAAATTAGTATCTGAGTTGCCCAATTTAAAAGCAGTACCTTGTAATTACTATGTTGATAATCATCTTAAATATTCATCACCATCCATTATTGACACTAATCATGATGATTCATTAATCCCCATCATTGATTTTTCCCTCCTTTCCTCAAAAGACCCTTATCAACACTCTAAAGTCATTCAACAACTTGGTAGAGCTTGTCAACAATGGGGATTTTTCATG : GTTGTGAACCATGGTATAGAAGAAAGTTTGATGAAGGAGTTGATTGGGGTGATAAAAGAATTTTTCTTAATGGGAGAGGAGGACAAATGGAGATACAAAGGGGAAAAAGTGTTTGATCCAATAAAGTATGGAACTAGCTTTAATTGTACTTCTAATCACGACATCACTACTACTTCTTATTGGAGAGATTACCTTAAACTCTCTCTTCATCCTCAACTTCATTGCCCCGACCAACCCAATAACTTCAG : AGAAGTTTTGGGTGAGTATGGTGAGAAATCGAGAAAAGTGGCAAGAAAATTACTATCAGGAATATCGGAAAGCTTAGGATTGGAAGAAGAGTTGATGAATAAATCCCTTGATCTGGACTCGGGTTACGAGGTGCTTGTTGCAAATTATTATCCAGCATGTCCACAGCCCGAACTTGTAATGGGCCTTCCACCCCATTCTGATTTTGGACTGTTAACTTTTCTTATACAAAATGATGTTGGAGGATTACAAATACAACACAATGGAAAATGGATCAACATCAATCCCATTCCCAACGCTATTTTGGTTAACACTGGCGATCACCT</gDNA_template>
            <first_frame> K  R  I  K  A  T  Y  K  N  M  K  S  V  K  L  V  S  E  L  P  N  L  K  A  V  P  C  N  Y  Y  V  D  N  H  L  K  Y  S  S  P  S  I  I  D  T  N  H  D  D  S  L  I  P  I  I  D  F  S  L  L  S  S  K  D  P  Y  Q  H  S  K  V  I  Q  Q  L  G  R  A  C  Q  Q  W  G  F  F  M  :  V  V  N  H  G  I  E  E  S  L  M  K  E  L  I  G  V  I  K  E  F  F  L  M  G  E  E  D  K  W  R  Y  K  G  E  K  V  F  D  P  I  K  Y  G  T  S  F  N  C  T  S  N  H  D  I  T  T  T  S  Y  W  R  D  Y  L  K  L  S  L  H  P  Q  L  H  C  P  D  Q  P  N  N  F  R :   E  V  L  G  E  Y  G  E  K  S  R  K  V  A  R  K  L  L  S  G  I  S  E  S  L  G  L  E  E  E  L  M  N  K  S  L  D  L  D  S  G  Y  E  V  L  V  A  N  Y  Y  P  A  C  P  Q  P  E  L  V  M  G  L  P  P  H  S  D  F  G  L  L  T  F  L  I  Q  N  D  V  G  G  L  Q  I  Q  H  N  G  K  W  I  N  I  N  P  I  P  N  A  I  L  V  N  T  G  D  H   </first_frame>
            <second_frame>  K  E  *  K  L  L  I  R  I  *  K  A  *  N  *  Y  L  S  C  P  I  *  K  Q  Y  L  V  I  T  M  L  I  I  I  L  N  I  H  H  H  P  L  L  T  L  I  M  M  I  H  *  S  P  S  L  I  F  P  S  F  P  Q  K  T  L  I  N  T  L  K  S  F  N  N  L  V  E  L  V  N  N  G  D  F  S  W :   L  *  T  M  V  *  K  K  V  *  *  R  S  *  L  G  *  *  K  N  F  S  *  W  E  R  R  T  N  G  D  T  K  G  K  K  C  L  I  Q  *  S  M  E  L  A  L  I  V  L  L  I  T  T  S  L  L  L  L  I  G  E  I  T  L  N  S  L  F  I  L  N  F  I  A  P  T  N  P  I  T  S   : E  K  F  W  V  S  M  V  R  N  R  E  K  W  Q  E  N  Y  Y  Q  E  Y  R  K  A  *  D  W  K  K  S  *  *  I  N  P  L  I  W  T  R  V  T  R  C  L  L  Q  I  I  I  Q  H  V  H  S  P  N  L  *  W  A  F  H  P  I  L  I  L  D  C  *  L  F  L  Y  K  M  M  L  E  D  Y  K  Y  N  T  M  E  N  G  S  T  S  I  P  F  P  T  L  F  W  L  T  L  A  I  T  </second_frame>
            <third_frame>   K  N  K  S  Y  L  *  E  Y  E  K  R  E  I  S  I  *  V  A  Q  F  K  S  S  T  L  *  L  L  C  *  *  S  S  *  I  F  I  T  I  H  Y  *  H  *  S  *  *  F  I  N  P  H  H  *  F  F  P  P  F  L  K  R  P  L  S  T  L  *  S  H  S  T  T  W  *  S  L  S  T  M  G  I  F  H   : G  C  E  P  W  Y  R  R  K  F  D  E  G  V  D  W  G  D  K  R  I  F  L  N  G  R  G  G  Q  M  E  I  Q  R  G  K  S  V  *  S  N  K  V  W  N  *  L  *  L  Y  F  *  S  R  H  H  Y  Y  F  L  L  E  R  L  P  *  T  L  S  S  S  S  T  S  L  P  R  P  T  Q  *  L  Q  :  R  S  F  G  *  V  W  *  E  I  E  K  S  G  K  K  I  T  I  R  N  I  G  K  L  R  I  G  R  R  V  D  E  *  I  P  *  S  G  L  G  L  R  G  A  C  C  K  L  L  S  S  M  S  T  A  R  T  C  N  G  P  S  T  P  F  *  F  W  T  V  N  F  S  Y  T  K  *  C  W  R  I  T  N  T  T  Q  W  K  M  D  Q  H  Q  S  H  S  Q  R  Y  F  G  *  H  W  R  S  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15541" stop="15798"/>
                    <exon start="16064" stop="16311"/>
                    <exon start="16586" stop="16907"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRIKATYKNMKSVKLVSELPNLKAVPCNYYVDNHLKYSSPSIIDTNHDDSLIPIIDFSLLSSKDPYQHSKVIQQLGRACQQWGFFMVVNHGIEESLMKELIGVIKEFFLMGEEDKWRYKGEKVFDPIKYGTSFNCTSNHDITTTSYWRDYLKLSLHPQLHCPDQPNNFREVLGEYGEKSRKVARKLLSGISESLGLEEELMNKSLDLDSGYEVLVANYYPACPQPELVMGLPPHSDFGLLTFLIQNDVGGLQIQHNGKWININPIPNAILVNTGDH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="19614" PGL_stop="22152"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19614" e_stop="19950"/>
            <exon e_start="20105" e_stop="20340"/>
            <exon e_start="20423" e_stop="20753"/>
            <exon e_start="20924" e_stop="21449"/>
            <exon e_start="22140" e_stop="22152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.642" acc_prob="0.976" e_score="0.998"/>
          <exon-only e_score="0.538"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19614" e_stop="19950" e_length="337"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.943">
            <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20105" e_stop="20340" e_length="236"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20423" e_stop="20753" e_length="331"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="20754" i_stop="20923" i_length="170"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="20924" e_stop="21449" e_length="526"/>
          </exon>
          <intron i_serial="4" don_prob="0.642" acc_prob="0.976">
            <gDNA_intron_boundary i_start="21450" i_stop="22139" i_length="690"/>
          </intron>
          <exon e_serial="5" e_score="0.538">
            <gDNA_exon_boundary e_start="22140" e_stop="22152" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19614" stop="19950"/>
              <exon start="20105" stop="20263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19617" stop="19950"/>
              <exon start="20105" stop="20277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19688" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20753"/>
              <exon start="20924" stop="20965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19694" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20753"/>
              <exon start="20924" stop="20965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19708" stop="19950"/>
              <exon start="20105" stop="20274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19709" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20753"/>
              <exon start="20924" stop="21021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19709" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20753"/>
              <exon start="20924" stop="20965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19710" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19710" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19710" stop="19950"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGATGCTGACACTTGGGTAATTTTACAAATTCTACAACATTTATCTCTATAAATTATCAACCTCTTTCCAAGCATTTTCATCAATTATGGAAGCTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG : GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG : GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAG : ATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGTTGTACGTGTAATCTTTTAATTAGTGAACGTTTTAGCCGTGTCTGTTTATATGTATATCTTCAAATTAAATGTCATTTTCGGATAAGAGGGTGATGCTAGTGAAGTAGGGTCATTCCATATATATGTCCAATTGATGACTCTTCCTACTCAAATTGAAGATTCAATTGCTTCTCCAAAC : AAACACAATTTAT</gDNA_template>
            <first_frame> Q  D  A  D  T  W  V  I  L  Q  I  L  Q  H  L  S  L  *  I  I  N  L  F  P  S  I  F  I  N  Y  G  S  Y  S  S  T  C  G  *  T  I  Q  C  Q  R  A  C  *  I  S  *  F  A  L  H  T  L  Q  L  C  L  *  L  F  Q  F  L  C  Y  K  *  Y  *  *  F  R  F  N  P  H  C  *  F  F  S  T  H  L  S  *  F  S  S  T  F  Y  S  H  P  P  P  H  Q  S  L  S  R  L  G  L  L  H   : G  S  E  P  R  H  T  R  K  S  D  E  V  S  D  *  L  H  S  *  I  F  Q  F  T  R  G  R  K  T  Q  V  Y  W  E  A  C  V  G  S  Y  K  I  W  D  K  F  Q  Y  *  Y  R  K  C  L  L  L  E  R  F  S  Q  G  L  C  P  S  S  F  S  L  S  H  Q  T  T  N  L  Q  :  G  Y  Y  V  G  V  *  *  E  T  P  G  S  D  K  K  V  T  R  R  H  I  *  K  F  R  A  *  R  K  L  L  G  E  R  F  R  V  G  I  R  A  S  N  L  R  W  K  L  L  S  T  L  S  S  T  *  T  S  N  G  Y  A  T  S  F  R  S  R  P  F  N  T  S  H  S  *  P  S  W  R  S  P  G  S  T  S  R  Q  M  D  *  R  Q  G  P  S  *  L  L  S  L  G  *  Y  R  R  S  S  R   : D  I  *  *  W  E  V  Q  E  Q  H  A  *  S  S  G  E  Q  Q  S  N  K  D  I  S  S  G  S  S  W  S  I  I  R  H  N  C  K  A  S  F  S  I  D  G  K  R  E  Q  P  I  S  *  L  Y  S  N  E  V  Q  G  L  L  G  D  A  T  K  Q  P  N  L  W  K  V  L  L  G  K  S  *  N  P  K  E  L  S  V  S  M  Y  I  F  L  L  F  P  S  V  *  *  Y  K  S  I  M  E  L  Q  *  Y  L  *  I  L  *  L  Y  V  *  S  F  N  *  *  T  F  *  P  C  L  F  I  C  I  S  S  N  *  M  S  F  S  D  K  R  V  M  L  V  K  *  G  H  S  I  Y  M  S  N  *  *  L  F  L  L  K  L  K  I  Q  L  L  L  Q  T :   N  T  I  Y </first_frame>
            <second_frame>  R  M  L  T  L  G  *  F  Y  K  F  Y  N  I  Y  L  Y  K  L  S  T  S  F  Q  A  F  S  S  I  M  E  A  T  A  P  L  V  V  K  P  S  N  V  K  E  L  A  E  S  P  D  L  R  C  I  P  Y  N  Y  V  Y  D  S  S  N  S  S  A  T  N  D  I  D  D  S  D  S  I  P  I  V  D  F  S  L  L  T  S  H  D  S  H  Q  R  S  T  A  I  H  H  L  T  K  A  C  Q  G  W  G  F  F  M  :  V  V  N  H  G  I  P  E  N  L  M  K  S  V  I  D  C  T  H  E  F  F  N  L  P  E  E  E  K  H  K  F  T  G  K  H  V  L  D  P  I  R  Y  G  T  S  F  N  T  S  T  E  N  V  F  F  W  R  D  F  L  K  V  F  V  H  P  H  F  H  S  P  T  K  P  Q  T  Y  R :   G  I  M  S  E  Y  S  E  K  L  R  E  V  T  R  K  L  L  G  G  I  S  E  S  L  G  L  E  E  S  Y  L  E  K  D  L  E  L  E  S  G  L  Q  I  F  V  G  N  Y  Y  P  P  C  P  Q  P  E  L  A  M  G  M  P  P  H  S  D  Q  G  L  L  T  L  L  I  H  N  Q  V  G  G  L  Q  V  Q  H  Q  G  K  W  I  N  V  K  A  L  P  N  Y  S  L  L  V  N  T  G  D  H  L  E  :  I  F  S  N  G  K  Y  K  S  N  M  H  R  A  V  V  N  N  K  V  T  R  I  S  V  V  V  A  H  G  P  S  L  D  T  I  V  K  P  A  S  P  L  M  E  K  E  N  S  P  S  A  N  Y  I  P  M  K  Y  K  D  Y  L  E  M  Q  Q  S  S  R  I  Y  G  K  S  C  L  E  K  V  K  I  Q  R  S  *  V  F  L  C  I  F  S  S  C  F  Q  V  F  D  D  I  K  V  L  W  N  F  N  N  I  Y  E  Y  Y  S  C  T  C  N  L  L  I  S  E  R  F  S  R  V  C  L  Y  V  Y  L  Q  I  K  C  H  F  R  I  R  G  *  C  *  *  S  R  V  I  P  Y  I  C  P  I  D  D  S  S  Y  S  N  *  R  F  N  C  F  S  K   : Q  T  Q  F   </second_frame>
            <third_frame>   G  C  *  H  L  G  N  F  T  N  S  T  T  F  I  S  I  N  Y  Q  P  L  S  K  H  F  H  Q  L  W  K  L  Q  L  H  L  W  L  N  H  P  M  S  K  S  L  L  N  L  L  I  C  V  A  Y  L  T  I  M  F  M  T  L  P  I  P  L  L  Q  M  I  L  M  I  Q  I  Q  S  P  L  L  I  F  L  Y  S  P  L  M  I  L  I  N  V  L  Q  P  S  T  T  S  P  K  L  V  K  V  G  A  S  S  W :   *  *  T  T  A  Y  Q  K  I  *  *  S  Q  *  L  I  A  L  M  N  F  S  I  Y  Q  R  K  K  N  T  S  L  L  G  S  M  C  W  I  L  *  D  M  G  Q  V  S  I  L  V  Q  K  M  S  S  F  G  E  I  F  S  R  S  L  S  I  L  I  F  T  L  P  P  N  H  K  P  T   : G  V  L  C  R  S  I  V  R  N  S  G  K  *  Q  E  S  Y  *  E  A  Y  L  K  V  *  G  L  K  K  V  T  W  R  K  I  *  S  W  N  Q  G  F  K  S  S  L  E  I  T  I  H  L  V  L  N  L  N  *  Q  W  V  C  H  L  I  Q  I  K  A  F  *  H  F  S  F  I  T  K  L  E  V  S  R  F  N  I  K  A  N  G  L  T  S  R  P  F  L  T  T  L  S  W  L  I  P  A  I  I  S  R :   Y  L  V  M  G  S  T  R  A  T  C  I  E  Q  W  *  T  T  K  *  Q  G  Y  Q  *  W  *  L  M  V  H  H  *  T  Q  L  *  S  Q  L  L  H  *  W  K  K  R  T  A  H  Q  L  I  I  F  Q  *  S  T  R  I  T  W  R  C  N  K  A  A  E  F  M  E  S  P  A  W  K  K  L  K  S  K  G  A  E  C  F  Y  V  Y  F  P  L  V  S  K  C  L  M  I  *  K  Y  Y  G  T  S  I  I  F  M  N  T  I  V  V  R  V  I  F  *  L  V  N  V  L  A  V  S  V  Y  M  Y  I  F  K  L  N  V  I  F  G  *  E  G  D  A  S  E  V  G  S  F  H  I  Y  V  Q  L  M  T  L  P  T  Q  I  E  D  S  I  A  S  P  N  :  K  H  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19636" stop="19950"/>
                    <exon start="20105" stop="20340"/>
                    <exon start="20423" stop="20753"/>
                    <exon start="20924" stop="21181"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1137</number_coding_nucleotides>
                  <number_encoded_amino_acids>379</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYKFYNIYLYKLSTSFQAFSSIMEATAPLVVKPSNVKELAESPDLRCIPYNYVYDSSNSSATNDIDDSDSIPIVDFSLLTSHDSHQRSTAIHHLTKACQGWGFFMVVNHGIPENLMKSVIDCTHEFFNLPEEEKHKFTGKHVLDPIRYGTSFNTSTENVFFWRDFLKVFVHPHFHSPTKPQTYRGIMSEYSEKLREVTRKLLGGISESLGLEESYLEKDLELESGLQIFVGNYYPPCPQPELAMGMPPHSDQGLLTLLIHNQVGGLQVQHQGKWINVKALPNYSLLVNTGDHLEIFSNGKYKSNMHRAVVNNKVTRISVVVAHGPSLDTIVKPASPLMEKENSPSANYIPMKYKDYLEMQQSSRIYGKSCLEKVKIQRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19614" e_stop="19950"/>
            <exon e_start="20105" e_stop="20340"/>
            <exon e_start="20423" e_stop="21449"/>
            <exon e_start="22140" e_stop="22152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.642" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.538"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19614" e_stop="19950" e_length="337"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.943">
            <gDNA_intron_boundary i_start="19951" i_stop="20104" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20105" e_stop="20340" e_length="236"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20341" i_stop="20422" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20423" e_stop="21449" e_length="1027"/>
          </exon>
          <intron i_serial="3" don_prob="0.642" acc_prob="0.976">
            <gDNA_intron_boundary i_start="21450" i_stop="22139" i_length="690"/>
          </intron>
          <exon e_serial="4" e_score="0.538">
            <gDNA_exon_boundary e_start="22140" e_stop="22152" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19614" stop="19950"/>
              <exon start="20105" stop="20263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19617" stop="19950"/>
              <exon start="20105" stop="20277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19708" stop="19950"/>
              <exon start="20105" stop="20274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19709" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19710" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19710" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19710" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19711" stop="19950"/>
              <exon start="20105" stop="20334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19711" stop="19894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19713" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19713" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19713" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19713" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19714" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19715" stop="19950"/>
              <exon start="20105" stop="20340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19716" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19716" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19716" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19716" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19716" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19716" stop="19950"/>
              <exon start="20105" stop="20330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19716" stop="19950"/>
              <exon start="20105" stop="20279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19716" stop="19943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19716" stop="19875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19718" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19718" stop="19950"/>
              <exon start="20105" stop="20314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19719" stop="19950"/>
              <exon start="20105" stop="20316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19721" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19721" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19728" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19739" stop="19950"/>
              <exon start="20105" stop="20326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19750" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19757" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19786" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19838" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19842" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19864" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19864" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19864" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19864" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19883" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19884" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19891" stop="19950"/>
              <exon start="20105" stop="20323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19892" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19892" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19892" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19893" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19910" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246080" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19921" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19921" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19921" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19921" stop="19950"/>
              <exon start="20105" stop="20340"/>
              <exon start="20423" stop="20492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19946" stop="19950"/>
              <exon start="20105" stop="20331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20114" stop="20340"/>
              <exon start="20423" stop="20650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20114" stop="20340"/>
              <exon start="20423" stop="20603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20114" stop="20340"/>
              <exon start="20423" stop="20597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20187" stop="20340"/>
              <exon start="20423" stop="20814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20304" stop="20340"/>
              <exon start="20423" stop="20837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20310" stop="20340"/>
              <exon start="20423" stop="20655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20433" stop="21060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20433" stop="20994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20434" stop="21067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20434" stop="21030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20434" stop="21011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20434" stop="20967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20434" stop="20963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20438" stop="21030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20561" stop="21099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20654" stop="21251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20993" stop="21269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20997" stop="21449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21133" stop="21449"/>
              <exon start="22140" stop="22152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGATGCTGACACTTGGGTAATTTTACAAATTCTACAACATTTATCTCTATAAATTATCAACCTCTTTCCAAGCATTTTCATCAATTATGGAAGCTACAGCTCCACTTGTGGTTAAACCATCCAATGTCAAAGAGCTTGCTGAATCTCCTGATTTGCGTTGCATACCTTACAATTATGTTTATGACTCTTCCAATTCCTCTGCTACAAATGATATTGATGATTCAGATTCAATCCCCATTGTTGATTTTTCTCTACTCACCTCTCATGATTCTCATCAACGTTCTACAGCCATCCACCACCTCACCAAAGCTTGTCAAGGTTGGGGCTTCTTCATG : GTAGTGAACCACGGCATACCAGAAAATCTGATGAAGTCAGTGATTGATTGCACTCATGAATTTTTCAATTTACCAGAGGAAGAAAAACACAAGTTTACTGGGAAGCATGTGTTGGATCCTATAAGATATGGGACAAGTTTCAATACTAGTACAGAAAATGTCTTCTTTTGGAGAGATTTTCTCAAGGTCTTTGTCCATCCTCATTTTCACTCTCCCACCAAACCACAAACCTACAG : GGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGTTGTACGTGTAATCTTTTAATTAGTGAACGTTTTAGCCGTGTCTGTTTATATGTATATCTTCAAATTAAATGTCATTTTCGGATAAGAGGGTGATGCTAGTGAAGTAGGGTCATTCCATATATATGTCCAATTGATGACTCTTCCTACTCAAATTGAAGATTCAATTGCTTCTCCAAAC : AAACACAATTTAT</gDNA_template>
            <first_frame> Q  D  A  D  T  W  V  I  L  Q  I  L  Q  H  L  S  L  *  I  I  N  L  F  P  S  I  F  I  N  Y  G  S  Y  S  S  T  C  G  *  T  I  Q  C  Q  R  A  C  *  I  S  *  F  A  L  H  T  L  Q  L  C  L  *  L  F  Q  F  L  C  Y  K  *  Y  *  *  F  R  F  N  P  H  C  *  F  F  S  T  H  L  S  *  F  S  S  T  F  Y  S  H  P  P  P  H  Q  S  L  S  R  L  G  L  L  H   : G  S  E  P  R  H  T  R  K  S  D  E  V  S  D  *  L  H  S  *  I  F  Q  F  T  R  G  R  K  T  Q  V  Y  W  E  A  C  V  G  S  Y  K  I  W  D  K  F  Q  Y  *  Y  R  K  C  L  L  L  E  R  F  S  Q  G  L  C  P  S  S  F  S  L  S  H  Q  T  T  N  L  Q  :  G  Y  Y  V  G  V  *  *  E  T  P  G  S  D  K  K  V  T  R  R  H  I  *  K  F  R  A  *  R  K  L  L  G  E  R  F  R  V  G  I  R  A  S  N  L  R  W  K  L  L  S  T  L  S  S  T  *  T  S  N  G  Y  A  T  S  F  R  S  R  P  F  N  T  S  H  S  *  P  S  W  R  S  P  G  S  T  S  R  Q  M  D  *  R  Q  G  P  S  *  L  L  S  L  G  *  Y  R  R  S  S  R  G  N  *  I  H  F  S  C  L  Q  S  Q  R  R  V  I  *  N  *  S  S  A  F  *  S  I  E  F  I  V  A  K  T  I  N  S  K  I  E  I  A  S  Y  F  T  V  T  S  R  P  K  F  Y  L  I  W  *  I  F  S  N  G  K  Y  K  S  N  M  H  R  A  V  V  N  N  K  V  T  R  I  S  V  V  V  A  H  G  P  S  L  D  T  I  V  K  P  A  S  P  L  M  E  K  E  N  S  P  S  A  N  Y  I  P  M  K  Y  K  D  Y  L  E  M  Q  Q  S  S  R  I  Y  G  K  S  C  L  E  K  V  K  I  Q  R  S  *  V  F  L  C  I  F  S  S  C  F  Q  V  F  D  D  I  K  V  L  W  N  F  N  N  I  Y  E  Y  Y  S  C  T  C  N  L  L  I  S  E  R  F  S  R  V  C  L  Y  V  Y  L  Q  I  K  C  H  F  R  I  R  G  *  C  *  *  S  R  V  I  P  Y  I  C  P  I  D  D  S  S  Y  S  N  *  R  F  N  C  F  S  K   : Q  T  Q  F   </first_frame>
            <second_frame>  R  M  L  T  L  G  *  F  Y  K  F  Y  N  I  Y  L  Y  K  L  S  T  S  F  Q  A  F  S  S  I  M  E  A  T  A  P  L  V  V  K  P  S  N  V  K  E  L  A  E  S  P  D  L  R  C  I  P  Y  N  Y  V  Y  D  S  S  N  S  S  A  T  N  D  I  D  D  S  D  S  I  P  I  V  D  F  S  L  L  T  S  H  D  S  H  Q  R  S  T  A  I  H  H  L  T  K  A  C  Q  G  W  G  F  F  M  :  V  V  N  H  G  I  P  E  N  L  M  K  S  V  I  D  C  T  H  E  F  F  N  L  P  E  E  E  K  H  K  F  T  G  K  H  V  L  D  P  I  R  Y  G  T  S  F  N  T  S  T  E  N  V  F  F  W  R  D  F  L  K  V  F  V  H  P  H  F  H  S  P  T  K  P  Q  T  Y  R :   G  I  M  S  E  Y  S  E  K  L  R  E  V  T  R  K  L  L  G  G  I  S  E  S  L  G  L  E  E  S  Y  L  E  K  D  L  E  L  E  S  G  L  Q  I  F  V  G  N  Y  Y  P  P  C  P  Q  P  E  L  A  M  G  M  P  P  H  S  D  Q  G  L  L  T  L  L  I  H  N  Q  V  G  G  L  Q  V  Q  H  Q  G  K  W  I  N  V  K  A  L  P  N  Y  S  L  L  V  N  T  G  D  H  L  E  V  I  K  S  I  F  H  V  Y  S  H  K  D  A  *  F  K  I  N  H  R  P  F  K  V  L  S  S  L  L  P  R  L  L  I  V  R  L  K  *  Q  V  I  L  L  L  L  Q  D  Q  N  F  I  *  Y  G  R  Y  L  V  M  G  S  T  R  A  T  C  I  E  Q  W  *  T  T  K  *  Q  G  Y  Q  *  W  *  L  M  V  H  H  *  T  Q  L  *  S  Q  L  L  H  *  W  K  K  R  T  A  H  Q  L  I  I  F  Q  *  S  T  R  I  T  W  R  C  N  K  A  A  E  F  M  E  S  P  A  W  K  K  L  K  S  K  G  A  E  C  F  Y  V  Y  F  P  L  V  S  K  C  L  M  I  *  K  Y  Y  G  T  S  I  I  F  M  N  T  I  V  V  R  V  I  F  *  L  V  N  V  L  A  V  S  V  Y  M  Y  I  F  K  L  N  V  I  F  G  *  E  G  D  A  S  E  V  G  S  F  H  I  Y  V  Q  L  M  T  L  P  T  Q  I  E  D  S  I  A  S  P  N  :  K  H  N  L  </second_frame>
            <third_frame>   G  C  *  H  L  G  N  F  T  N  S  T  T  F  I  S  I  N  Y  Q  P  L  S  K  H  F  H  Q  L  W  K  L  Q  L  H  L  W  L  N  H  P  M  S  K  S  L  L  N  L  L  I  C  V  A  Y  L  T  I  M  F  M  T  L  P  I  P  L  L  Q  M  I  L  M  I  Q  I  Q  S  P  L  L  I  F  L  Y  S  P  L  M  I  L  I  N  V  L  Q  P  S  T  T  S  P  K  L  V  K  V  G  A  S  S  W :   *  *  T  T  A  Y  Q  K  I  *  *  S  Q  *  L  I  A  L  M  N  F  S  I  Y  Q  R  K  K  N  T  S  L  L  G  S  M  C  W  I  L  *  D  M  G  Q  V  S  I  L  V  Q  K  M  S  S  F  G  E  I  F  S  R  S  L  S  I  L  I  F  T  L  P  P  N  H  K  P  T   : G  V  L  C  R  S  I  V  R  N  S  G  K  *  Q  E  S  Y  *  E  A  Y  L  K  V  *  G  L  K  K  V  T  W  R  K  I  *  S  W  N  Q  G  F  K  S  S  L  E  I  T  I  H  L  V  L  N  L  N  *  Q  W  V  C  H  L  I  Q  I  K  A  F  *  H  F  S  F  I  T  K  L  E  V  S  R  F  N  I  K  A  N  G  L  T  S  R  P  F  L  T  T  L  S  W  L  I  P  A  I  I  S  R  *  L  N  P  F  F  M  S  T  V  T  K  T  R  D  L  K  L  I  I  G  L  L  K  Y  *  V  H  C  C  Q  D  Y  *  *  *  D  *  N  S  K  L  F  Y  C  Y  F  K  T  K  I  L  F  N  M  V  D  I  *  *  W  E  V  Q  E  Q  H  A  *  S  S  G  E  Q  Q  S  N  K  D  I  S  S  G  S  S  W  S  I  I  R  H  N  C  K  A  S  F  S  I  D  G  K  R  E  Q  P  I  S  *  L  Y  S  N  E  V  Q  G  L  L  G  D  A  T  K  Q  P  N  L  W  K  V  L  L  G  K  S  *  N  P  K  E  L  S  V  S  M  Y  I  F  L  L  F  P  S  V  *  *  Y  K  S  I  M  E  L  Q  *  Y  L  *  I  L  *  L  Y  V  *  S  F  N  *  *  T  F  *  P  C  L  F  I  C  I  S  S  N  *  M  S  F  S  D  K  R  V  M  L  V  K  *  G  H  S  I  Y  M  S  N  *  *  L  F  L  L  K  L  K  I  Q  L  L  L  Q  T :   N  T  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19636" stop="19950"/>
                    <exon start="20105" stop="20340"/>
                    <exon start="20423" stop="20798"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYKFYNIYLYKLSTSFQAFSSIMEATAPLVVKPSNVKELAESPDLRCIPYNYVYDSSNSSATNDIDDSDSIPIVDFSLLTSHDSHQRSTAIHHLTKACQGWGFFMVVNHGIPENLMKSVIDCTHEFFNLPEEEKHKFTGKHVLDPIRYGTSFNTSTENVFFWRDFLKVFVHPHFHSPTKPQTYRGIMSEYSEKLREVTRKLLGGISESLGLEESYLEKDLELESGLQIFVGNYYPPCPQPELAMGMPPHSDQGLLTLLIHNQVGGLQVQHQGKWINVKALPNYSLLVNTGDHLEVIKSIFHVYSHKDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20924" stop="21181"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSNGKYKSNMHRAVVNNKVTRISVVVAHGPSLDTIVKPASPLMEKENSPSANYIPMKYKDYLEMQQSSRIYGKSCLEKVKIQRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="20411" e_stop="21449"/>
            <exon e_start="22140" e_stop="22152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.642" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.538"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20411" e_stop="21449" e_length="1039"/>
          </exon>
          <intron i_serial="1" don_prob="0.642" acc_prob="0.976">
            <gDNA_intron_boundary i_start="21450" i_stop="22139" i_length="690"/>
          </intron>
          <exon e_serial="2" e_score="0.538">
            <gDNA_exon_boundary e_start="22140" e_stop="22152" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20411" stop="20813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20411" stop="20811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20433" stop="21060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20433" stop="20994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20434" stop="21067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20434" stop="21030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20434" stop="21011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20434" stop="20967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20434" stop="20963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20438" stop="21030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20561" stop="21099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20654" stop="21251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20993" stop="21269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20997" stop="21449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21133" stop="21449"/>
              <exon start="22140" stop="22152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAATTTAACAGGGGTATTATGTCGGAGTATAGTGAGAAACTCCGGGAAGTGACAAGAAAGTTACTAGGAGGCATATCTGAAAGTTTAGGGCTTGAAGAAAGTTACTTGGAGAAAGATTTAGAGTTGGAATCAGGGCTTCAAATCTTCGTTGGAAATTACTATCCACCTTGTCCTCAACCTGAACTAGCAATGGGTATGCCACCTCATTCAGATCAAGGCCTTTTAACACTTCTCATTCATAACCAAGTTGGAGGTCTCCAGGTTCAACATCAAGGCAAATGGATTAACGTCAAGGCCCTTCCTAACTACTCTCTCTTGGTTAATACCGGCGATCATCTCGAGGTAATTAAATCCATTTTTCATGTCTACAGTCACAAAGACGCGTGATTTAAAATTAATCATCGGCCTTTTAAAGTATTGAGTTCATTGTTGCCAAGACTATTAATAGTAAGATTGAAATAGCAAGTTATTTTACTGTTACTTCAAGACCAAAATTTTATTTAATATGGTAGATATTTAGTAATGGGAAGTACAAGAGCAACATGCATAGAGCAGTGGTGAACAACAAAGTAACAAGGATATCAGTAGTGGTAGCTCATGGTCCATCATTAGACACAATTGTAAAGCCAGCTTCTCCATTGATGGAAAAAGAGAACAGCCCATCAGCTAATTATATTCCAATGAAGTACAAGGATTACTTGGAGATGCAACAAAGCAGCCGAATTTATGGAAAGTCCTGCTTGGAAAAAGTTAAAATCCAAAGGAGCTGAGTGTTTCTATGTATATTTTCCTCTTGTTTCCAAGTGTTTGATGATATAAAAGTATTATGGAACTTCAATAATATTTATGAATACTATAGTTGTACGTGTAATCTTTTAATTAGTGAACGTTTTAGCCGTGTCTGTTTATATGTATATCTTCAAATTAAATGTCATTTTCGGATAAGAGGGTGATGCTAGTGAAGTAGGGTCATTCCATATATATGTCCAATTGATGACTCTTCCTACTCAAATTGAAGATTCAATTGCTTCTCCAAAC : AAACACAATTTAT</gDNA_template>
            <first_frame> *  I  *  Q  G  Y  Y  V  G  V  *  *  E  T  P  G  S  D  K  K  V  T  R  R  H  I  *  K  F  R  A  *  R  K  L  L  G  E  R  F  R  V  G  I  R  A  S  N  L  R  W  K  L  L  S  T  L  S  S  T  *  T  S  N  G  Y  A  T  S  F  R  S  R  P  F  N  T  S  H  S  *  P  S  W  R  S  P  G  S  T  S  R  Q  M  D  *  R  Q  G  P  S  *  L  L  S  L  G  *  Y  R  R  S  S  R  G  N  *  I  H  F  S  C  L  Q  S  Q  R  R  V  I  *  N  *  S  S  A  F  *  S  I  E  F  I  V  A  K  T  I  N  S  K  I  E  I  A  S  Y  F  T  V  T  S  R  P  K  F  Y  L  I  W  *  I  F  S  N  G  K  Y  K  S  N  M  H  R  A  V  V  N  N  K  V  T  R  I  S  V  V  V  A  H  G  P  S  L  D  T  I  V  K  P  A  S  P  L  M  E  K  E  N  S  P  S  A  N  Y  I  P  M  K  Y  K  D  Y  L  E  M  Q  Q  S  S  R  I  Y  G  K  S  C  L  E  K  V  K  I  Q  R  S  *  V  F  L  C  I  F  S  S  C  F  Q  V  F  D  D  I  K  V  L  W  N  F  N  N  I  Y  E  Y  Y  S  C  T  C  N  L  L  I  S  E  R  F  S  R  V  C  L  Y  V  Y  L  Q  I  K  C  H  F  R  I  R  G  *  C  *  *  S  R  V  I  P  Y  I  C  P  I  D  D  S  S  Y  S  N  *  R  F  N  C  F  S  K   : Q  T  Q  F   </first_frame>
            <second_frame>  K  F  N  R  G  I  M  S  E  Y  S  E  K  L  R  E  V  T  R  K  L  L  G  G  I  S  E  S  L  G  L  E  E  S  Y  L  E  K  D  L  E  L  E  S  G  L  Q  I  F  V  G  N  Y  Y  P  P  C  P  Q  P  E  L  A  M  G  M  P  P  H  S  D  Q  G  L  L  T  L  L  I  H  N  Q  V  G  G  L  Q  V  Q  H  Q  G  K  W  I  N  V  K  A  L  P  N  Y  S  L  L  V  N  T  G  D  H  L  E  V  I  K  S  I  F  H  V  Y  S  H  K  D  A  *  F  K  I  N  H  R  P  F  K  V  L  S  S  L  L  P  R  L  L  I  V  R  L  K  *  Q  V  I  L  L  L  L  Q  D  Q  N  F  I  *  Y  G  R  Y  L  V  M  G  S  T  R  A  T  C  I  E  Q  W  *  T  T  K  *  Q  G  Y  Q  *  W  *  L  M  V  H  H  *  T  Q  L  *  S  Q  L  L  H  *  W  K  K  R  T  A  H  Q  L  I  I  F  Q  *  S  T  R  I  T  W  R  C  N  K  A  A  E  F  M  E  S  P  A  W  K  K  L  K  S  K  G  A  E  C  F  Y  V  Y  F  P  L  V  S  K  C  L  M  I  *  K  Y  Y  G  T  S  I  I  F  M  N  T  I  V  V  R  V  I  F  *  L  V  N  V  L  A  V  S  V  Y  M  Y  I  F  K  L  N  V  I  F  G  *  E  G  D  A  S  E  V  G  S  F  H  I  Y  V  Q  L  M  T  L  P  T  Q  I  E  D  S  I  A  S  P  N  :  K  H  N  L  </second_frame>
            <third_frame>   N  L  T  G  V  L  C  R  S  I  V  R  N  S  G  K  *  Q  E  S  Y  *  E  A  Y  L  K  V  *  G  L  K  K  V  T  W  R  K  I  *  S  W  N  Q  G  F  K  S  S  L  E  I  T  I  H  L  V  L  N  L  N  *  Q  W  V  C  H  L  I  Q  I  K  A  F  *  H  F  S  F  I  T  K  L  E  V  S  R  F  N  I  K  A  N  G  L  T  S  R  P  F  L  T  T  L  S  W  L  I  P  A  I  I  S  R  *  L  N  P  F  F  M  S  T  V  T  K  T  R  D  L  K  L  I  I  G  L  L  K  Y  *  V  H  C  C  Q  D  Y  *  *  *  D  *  N  S  K  L  F  Y  C  Y  F  K  T  K  I  L  F  N  M  V  D  I  *  *  W  E  V  Q  E  Q  H  A  *  S  S  G  E  Q  Q  S  N  K  D  I  S  S  G  S  S  W  S  I  I  R  H  N  C  K  A  S  F  S  I  D  G  K  R  E  Q  P  I  S  *  L  Y  S  N  E  V  Q  G  L  L  G  D  A  T  K  Q  P  N  L  W  K  V  L  L  G  K  S  *  N  P  K  E  L  S  V  S  M  Y  I  F  L  L  F  P  S  V  *  *  Y  K  S  I  M  E  L  Q  *  Y  L  *  I  L  *  L  Y  V  *  S  F  N  *  *  T  F  *  P  C  L  F  I  C  I  S  S  N  *  M  S  F  S  D  K  R  V  M  L  V  K  *  G  H  S  I  Y  M  S  N  *  *  L  F  L  L  K  L  K  I  Q  L  L  L  Q  T :   N  T  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20412" stop="20798"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFNRGIMSEYSEKLREVTRKLLGGISESLGLEESYLEKDLELESGLQIFVGNYYPPCPQPELAMGMPPHSDQGLLTLLIHNQVGGLQVQHQGKWINVKALPNYSLLVNTGDHLEVIKSIFHVYSHKDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20924" stop="21181"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSNGKYKSNMHRAVVNNKVTRISVVVAHGPSLDTIVKPASPLMEKENSPSANYIPMKYKDYLEMQQSSRIYGKSCLEKVKIQRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="24617" PGL_stop="27685"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24617" e_stop="25019"/>
            <exon e_start="26022" e_stop="26318"/>
            <exon e_start="27363" e_stop="27685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24617" e_stop="25019" e_length="403"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.996">
            <gDNA_intron_boundary i_start="25020" i_stop="26021" i_length="1002"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26022" e_stop="26318" e_length="297"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26319" i_stop="27362" i_length="1044"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="27363" e_stop="27685" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24617" stop="25019"/>
              <exon start="26022" stop="26318"/>
              <exon start="27363" stop="27415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24618" stop="25019"/>
              <exon start="26022" stop="26274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24722" stop="25019"/>
              <exon start="26022" stop="26317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24813" stop="25019"/>
              <exon start="26022" stop="26318"/>
              <exon start="27363" stop="27596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24820" stop="25019"/>
              <exon start="26022" stop="26318"/>
              <exon start="27363" stop="27685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552340" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGGTCTGTTTTATTATGTCAGAGAAAGTTGAGTGGAGAAAAACATGCTTGTAAGACTTTGCTTAAGGGGGAAGAGATCATTCACCGTGAAGTTGAGATTATGCAGCATCTCTCTGGGCATCCAGGTGTTGTGACACTGAAGGCTGTGTATGAGGATGCTGAATCTTTTTATCTTGTCATGGAACTTTGCTCAGGAGGAAGGTTGCTTGACCAAATGGCTAGGGTTGGGCGATACCCTGAGCAACAAGCTGCTAATGTGATCAAAGAGCTCATGCTGGTTATCAGATACTGCCATGAGATGGGTGTTGTGCACAGGGACATAAAGCCTGAAAATGTCCTCCTTACAACCTCTGGACAAGTTAAGGTTTCAGACTTTGGGCTAGCTGTGAGAATTTCACATG : GTCAGAGCTTGACTGGAGTAGTTGGAAGTCCAGCTTATGTTGCTCCTGAGGTTCTGCTAGGTGATTACACAGAGAAAGTGGACATATGGAGTGTAGGTGTCCTCCTACATGCACTTTTGGTGGGCTTGCTCCCATTTCAAGGTGATTCTTTGGAATCTATATTCAGTGCAATTAAGGAGGAGAACCTTGATTTCAGTGGTGGAGCTTGGGCATCTGTATCACAACCAGCTCGTGATCTGCTTTCTTGCATGATGACAAGGGATGTCTCAGCAAGGTACAGTGCTGACGAAGTACTAA : GACATCCATGGATTTTGTTTTACACTGCACCCACATTGAAGAATCATGCAAAGCCAATTAGAAGCCAGCTAACTGCTACTACTAGGATAGAGCGAGAGAGAAGAAACTTAGCCTTCAGCTCTCTCAGTGATGACTTTGGTTCAACTTTTACATCTGGTAGTTCGTCTAAGATGCCTGAAGGTGAAGACTCTGGTTTTATCGATGCTCTCACGGTTGCTGTTTCACACATGAAGATATCAGAGCCAAAGAGAAGCAGAATATGCAGCCCAGCCAGAACAATCGATCAAGAATGTTCTCCTAACATACAAGCTAACCACCTCTGT</gDNA_template>
            <first_frame> F  G  S  V  L  L  C  Q  R  K  L  S  G  E  K  H  A  C  K  T  L  L  K  G  E  E  I  I  H  R  E  V  E  I  M  Q  H  L  S  G  H  P  G  V  V  T  L  K  A  V  Y  E  D  A  E  S  F  Y  L  V  M  E  L  C  S  G  G  R  L  L  D  Q  M  A  R  V  G  R  Y  P  E  Q  Q  A  A  N  V  I  K  E  L  M  L  V  I  R  Y  C  H  E  M  G  V  V  H  R  D  I  K  P  E  N  V  L  L  T  T  S  G  Q  V  K  V  S  D  F  G  L  A  V  R  I  S  H   : G  Q  S  L  T  G  V  V  G  S  P  A  Y  V  A  P  E  V  L  L  G  D  Y  T  E  K  V  D  I  W  S  V  G  V  L  L  H  A  L  L  V  G  L  L  P  F  Q  G  D  S  L  E  S  I  F  S  A  I  K  E  E  N  L  D  F  S  G  G  A  W  A  S  V  S  Q  P  A  R  D  L  L  S  C  M  M  T  R  D  V  S  A  R  Y  S  A  D  E  V  L   : R  H  P  W  I  L  F  Y  T  A  P  T  L  K  N  H  A  K  P  I  R  S  Q  L  T  A  T  T  R  I  E  R  E  R  R  N  L  A  F  S  S  L  S  D  D  F  G  S  T  F  T  S  G  S  S  S  K  M  P  E  G  E  D  S  G  F  I  D  A  L  T  V  A  V  S  H  M  K  I  S  E  P  K  R  S  R  I  C  S  P  A  R  T  I  D  Q  E  C  S  P  N  I  Q  A  N  H  L  C </first_frame>
            <second_frame>  L  G  L  F  Y  Y  V  R  E  S  *  V  E  K  N  M  L  V  R  L  C  L  R  G  K  R  S  F  T  V  K  L  R  L  C  S  I  S  L  G  I  Q  V  L  *  H  *  R  L  C  M  R  M  L  N  L  F  I  L  S  W  N  F  A  Q  E  E  G  C  L  T  K  W  L  G  L  G  D  T  L  S  N  K  L  L  M  *  S  K  S  S  C  W  L  S  D  T  A  M  R  W  V  L  C  T  G  T  *  S  L  K  M  S  S  L  Q  P  L  D  K  L  R  F  Q  T  L  G  *  L  *  E  F  H  M  :  V  R  A  *  L  E  *  L  E  V  Q  L  M  L  L  L  R  F  C  *  V  I  T  Q  R  K  W  T  Y  G  V  *  V  S  S  Y  M  H  F  W  W  A  C  S  H  F  K  V  I  L  W  N  L  Y  S  V  Q  L  R  R  R  T  L  I  S  V  V  E  L  G  H  L  Y  H  N  Q  L  V  I  C  F  L  A  *  *  Q  G  M  S  Q  Q  G  T  V  L  T  K  Y  *  :  D  I  H  G  F  C  F  T  L  H  P  H  *  R  I  M  Q  S  Q  L  E  A  S  *  L  L  L  L  G  *  S  E  R  E  E  T  *  P  S  A  L  S  V  M  T  L  V  Q  L  L  H  L  V  V  R  L  R  C  L  K  V  K  T  L  V  L  S  M  L  S  R  L  L  F  H  T  *  R  Y  Q  S  Q  R  E  A  E  Y  A  A  Q  P  E  Q  S  I  K  N  V  L  L  T  Y  K  L  T  T  S   </second_frame>
            <third_frame>   W  V  C  F  I  M  S  E  K  V  E  W  R  K  T  C  L  *  D  F  A  *  G  G  R  D  H  S  P  *  S  *  D  Y  A  A  S  L  W  A  S  R  C  C  D  T  E  G  C  V  *  G  C  *  I  F  L  S  C  H  G  T  L  L  R  R  K  V  A  *  P  N  G  *  G  W  A  I  P  *  A  T  S  C  *  C  D  Q  R  A  H  A  G  Y  Q  I  L  P  *  D  G  C  C  A  Q  G  H  K  A  *  K  C  P  P  Y  N  L  W  T  S  *  G  F  R  L  W  A  S  C  E  N  F  T  W :   S  E  L  D  W  S  S  W  K  S  S  L  C  C  S  *  G  S  A  R  *  L  H  R  E  S  G  H  M  E  C  R  C  P  P  T  C  T  F  G  G  L  A  P  I  S  R  *  F  F  G  I  Y  I  Q  C  N  *  G  G  E  P  *  F  Q  W  W  S  L  G  I  C  I  T  T  S  S  *  S  A  F  L  H  D  D  K  G  C  L  S  K  V  Q  C  *  R  S  T  K :   T  S  M  D  F  V  L  H  C  T  H  I  E  E  S  C  K  A  N  *  K  P  A  N  C  Y  Y  *  D  R  A  R  E  K  K  L  S  L  Q  L  S  Q  *  *  L  W  F  N  F  Y  I  W  *  F  V  *  D  A  *  R  *  R  L  W  F  Y  R  C  S  H  G  C  C  F  T  H  E  D  I  R  A  K  E  K  Q  N  M  Q  P  S  Q  N  N  R  S  R  M  F  S  *  H  T  S  *  P  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24617" stop="25019"/>
                    <exon start="26022" stop="26318"/>
                    <exon start="27363" stop="27685"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGSVLLCQRKLSGEKHACKTLLKGEEIIHREVEIMQHLSGHPGVVTLKAVYEDAESFYLVMELCSGGRLLDQMARVGRYPEQQAANVIKELMLVIRYCHEMGVVHRDIKPENVLLTTSGQVKVSDFGLAVRISHGQSLTGVVGSPAYVAPEVLLGDYTEKVDIWSVGVLLHALLVGLLPFQGDSLESIFSAIKEENLDFSGGAWASVSQPARDLLSCMMTRDVSARYSADEVLRHPWILFYTAPTLKNHAKPIRSQLTATTRIERERRNLAFSSLSDDFGSTFTSGSSSKMPEGEDSGFIDALTVAVSHMKISEPKRSRICSPARTIDQECSPNIQANHLC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="27836" PGL_stop="28051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27836" e_stop="28051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="27836" e_stop="28051" e_length="216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27836" stop="28051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATTAATAAACAAACCTGTCAGATCATACTCGACTAGTTTGGAGTTGCTTCTGTCATGTGAATTCATAACATGTCTAACTTATAAGTTAGAATGTGTGTGTGTGATTATGTAAATAAGGCGTGTTTTCTGACTCATTTCTATTGGGACGTTGTAAGAAAATCTTCAATGGTGATAAGATATAATGCATTTGTAATCCATCTTGTTCAAGATTGG</gDNA_template>
            <first_frame> I  I  N  K  Q  T  C  Q  I  I  L  D  *  F  G  V  A  S  V  M  *  I  H  N  M  S  N  L  *  V  R  M  C  V  C  D  Y  V  N  K  A  C  F  L  T  H  F  Y  W  D  V  V  R  K  S  S  M  V  I  R  Y  N  A  F  V  I  H  L  V  Q  D  W </first_frame>
            <second_frame>  S  L  I  N  K  P  V  R  S  Y  S  T  S  L  E  L  L  L  S  C  E  F  I  T  C  L  T  Y  K  L  E  C  V  C  V  I  M  *  I  R  R  V  F  *  L  I  S  I  G  T  L  *  E  N  L  Q  W  *  *  D  I  M  H  L  *  S  I  L  F  K  I   </second_frame>
            <third_frame>   H  *  *  T  N  L  S  D  H  T  R  L  V  W  S  C  F  C  H  V  N  S  *  H  V  *  L  I  S  *  N  V  C  V  *  L  C  K  *  G  V  F  S  D  S  F  L  L  G  R  C  K  K  I  F  N  G  D  K  I  *  C  I  C  N  P  S  C  S  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0037D10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="31523" PGL_stop="33121"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31523" e_stop="32102"/>
            <exon e_start="32455" e_stop="33121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.874" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31523" e_stop="32102" e_length="580"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.874">
            <gDNA_intron_boundary i_start="32103" i_stop="32454" i_length="352"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="32455" e_stop="33121" e_length="667"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31523" stop="32102"/>
              <exon start="32455" stop="32581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31523" stop="32102"/>
              <exon start="32455" stop="32568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31524" stop="31976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32063" stop="32102"/>
              <exon start="32455" stop="33111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32675" stop="33121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550000" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGAGAGGGGGTCTCCATATGATAATAGCAGGATCAGGAGAAGAAATACCAACTGTCCAGGCCAAAGATCAAAGGATGATTGTTGAAAGCCTAATTAGCATACTCCCACAACAGAAGGACAGTGTTTCATGTAGCTTCCTTCTTCGACTATTGAGGATGGCAAACATGCTTAAAGTGGCTCCAGCTTTGATAACAGAACTGGAGAAACGCGTAGGCATGCAATTTGAGCAGGCTACATTGGCTGATCTCCTCATACCATCTTACCATAAAAGTGAAACCATGTATGACATTGATCTCGTCCAGAGGCTTTTGGAACATTTCATAATTCAAGAGCAGACAGAAAGTTCAAGTCCTAGTAGATATCCATTCCACGATAAACATATGCAGGATGGAAGTCAAAGGGGTACAAATCTAAATGCCAAGATGAGGGTGGCAAGGCTCGTTGACAGTTACTTAACAGAAGTATCTAGAGATAGAAATCTTTCCTTGACAAAGTTTCAGGTCTTGGCAGAGGCTTTGCCAGATTCAGCAAGAACATGTGATGATGGACTTTATCGAGCAATTGATTCCTATCTTAAG : GCCCATCCAACACTCTCAGAACATGAAAGAAAGAGGCTTTGCAGGGTGATGGATTGCCAGAAACTCTCTGTTGATGCTTGCATGCACGCTGCTCAGAATGAAAGGCTCCCACTACGAGTGGTGGTGCAAGTTCTCTTCTCTGAGCAGGTGAAGATAAGCAATGCAATAGCCAATATCTCTCTCAAAGATGAAGGGGAAACTCATTATCAACCCCTGGTATCACACCATAAGTCATTGCTTGAAGCAACGCCACAATCATTTCAAGAGGGATGGACAGCAGCCAAGAAGGACATAAACACTCTTAAGTTTGAACTAGAGACTGTGAAGACTAAATACGTAGAACTCCAAAATGACATGGTTGACTTACAGAGACAGTTCGATAAGATTGCAAAACCAAAACAAGCCTCAGCATGGACTGCAGGTTGGAAAAAGTTGAGCAAGCTCACAAAAACGACAAATGTAGAAACACATGACATCAGTAGTCAGATCCCAAATGCTGAACAGACCACAAAGCCTAGAAGGTGGAGAAATTCCATTTCCTGAGAAGGAAAGGCTATGATAGAAGACTATCGGTTACAAGACTACCTCACAGAGTCATTATGTGTTACCTAATATTCAAATTATCATGCTTCTCCTATCACAAGAGTAGTTAAGACTTTCATTTTCA</gDNA_template>
            <first_frame> L  E  R  G  S  P  Y  D  N  S  R  I  R  R  R  N  T  N  C  P  G  Q  R  S  K  D  D  C  *  K  P  N  *  H  T  P  T  T  E  G  Q  C  F  M  *  L  P  S  S  T  I  E  D  G  K  H  A  *  S  G  S  S  F  D  N  R  T  G  E  T  R  R  H  A  I  *  A  G  Y  I  G  *  S  P  H  T  I  L  P  *  K  *  N  H  V  *  H  *  S  R  P  E  A  F  G  T  F  H  N  S  R  A  D  R  K  F  K  S  *  *  I  S  I  P  R  *  T  Y  A  G  W  K  S  K  G  Y  K  S  K  C  Q  D  E  G  G  K  A  R  *  Q  L  L  N  R  S  I  *  R  *  K  S  F  L  D  K  V  S  G  L  G  R  G  F  A  R  F  S  K  N  M  *  *  W  T  L  S  S  N  *  F  L  S  *   : G  P  S  N  T  L  R  T  *  K  K  E  A  L  Q  G  D  G  L  P  E  T  L  C  *  C  L  H  A  R  C  S  E  *  K  A  P  T  T  S  G  G  A  S  S  L  L  *  A  G  E  D  K  Q  C  N  S  Q  Y  L  S  Q  R  *  R  G  N  S  L  S  T  P  G  I  T  P  *  V  I  A  *  S  N  A  T  I  I  S  R  G  M  D  S  S  Q  E  G  H  K  H  S  *  V  *  T  R  D  C  E  D  *  I  R  R  T  P  K  *  H  G  *  L  T  E  T  V  R  *  D  C  K  T  K  T  S  L  S  M  D  C  R  L  E  K  V  E  Q  A  H  K  N  D  K  C  R  N  T  *  H  Q  *  S  D  P  K  C  *  T  D  H  K  A  *  K  V  E  K  F  H  F  L  R  R  K  G  Y  D  R  R  L  S  V  T  R  L  P  H  R  V  I  M  C  Y  L  I  F  K  L  S  C  F  S  Y  H  K  S  S  *  D  F  H  F   </first_frame>
            <second_frame>  W  R  G  G  L  H  M  I  I  A  G  S  G  E  E  I  P  T  V  Q  A  K  D  Q  R  M  I  V  E  S  L  I  S  I  L  P  Q  Q  K  D  S  V  S  C  S  F  L  L  R  L  L  R  M  A  N  M  L  K  V  A  P  A  L  I  T  E  L  E  K  R  V  G  M  Q  F  E  Q  A  T  L  A  D  L  L  I  P  S  Y  H  K  S  E  T  M  Y  D  I  D  L  V  Q  R  L  L  E  H  F  I  I  Q  E  Q  T  E  S  S  S  P  S  R  Y  P  F  H  D  K  H  M  Q  D  G  S  Q  R  G  T  N  L  N  A  K  M  R  V  A  R  L  V  D  S  Y  L  T  E  V  S  R  D  R  N  L  S  L  T  K  F  Q  V  L  A  E  A  L  P  D  S  A  R  T  C  D  D  G  L  Y  R  A  I  D  S  Y  L  K  :  A  H  P  T  L  S  E  H  E  R  K  R  L  C  R  V  M  D  C  Q  K  L  S  V  D  A  C  M  H  A  A  Q  N  E  R  L  P  L  R  V  V  V  Q  V  L  F  S  E  Q  V  K  I  S  N  A  I  A  N  I  S  L  K  D  E  G  E  T  H  Y  Q  P  L  V  S  H  H  K  S  L  L  E  A  T  P  Q  S  F  Q  E  G  W  T  A  A  K  K  D  I  N  T  L  K  F  E  L  E  T  V  K  T  K  Y  V  E  L  Q  N  D  M  V  D  L  Q  R  Q  F  D  K  I  A  K  P  K  Q  A  S  A  W  T  A  G  W  K  K  L  S  K  L  T  K  T  T  N  V  E  T  H  D  I  S  S  Q  I  P  N  A  E  Q  T  T  K  P  R  R  W  R  N  S  I  S  *  E  G  K  A  M  I  E  D  Y  R  L  Q  D  Y  L  T  E  S  L  C  V  T  *  Y  S  N  Y  H  A  S  P  I  T  R  V  V  K  T  F  I  F  </second_frame>
            <third_frame>   G  E  G  V  S  I  *  *  *  Q  D  Q  E  K  K  Y  Q  L  S  R  P  K  I  K  G  *  L  L  K  A  *  L  A  Y  S  H  N  R  R  T  V  F  H  V  A  S  F  F  D  Y  *  G  W  Q  T  C  L  K  W  L  Q  L  *  *  Q  N  W  R  N  A  *  A  C  N  L  S  R  L  H  W  L  I  S  S  Y  H  L  T  I  K  V  K  P  C  M  T  L  I  S  S  R  G  F  W  N  I  S  *  F  K  S  R  Q  K  V  Q  V  L  V  D  I  H  S  T  I  N  I  C  R  M  E  V  K  G  V  Q  I  *  M  P  R  *  G  W  Q  G  S  L  T  V  T  *  Q  K  Y  L  E  I  E  I  F  P  *  Q  S  F  R  S  W  Q  R  L  C  Q  I  Q  Q  E  H  V  M  M  D  F  I  E  Q  L  I  P  I  L  R :   P  I  Q  H  S  Q  N  M  K  E  R  G  F  A  G  *  W  I  A  R  N  S  L  L  M  L  A  C  T  L  L  R  M  K  G  S  H  Y  E  W  W  C  K  F  S  S  L  S  R  *  R  *  A  M  Q  *  P  I  S  L  S  K  M  K  G  K  L  I  I  N  P  W  Y  H  T  I  S  H  C  L  K  Q  R  H  N  H  F  K  R  D  G  Q  Q  P  R  R  T  *  T  L  L  S  L  N  *  R  L  *  R  L  N  T  *  N  S  K  M  T  W  L  T  Y  R  D  S  S  I  R  L  Q  N  Q  N  K  P  Q  H  G  L  Q  V  G  K  S  *  A  S  S  Q  K  R  Q  M  *  K  H  M  T  S  V  V  R  S  Q  M  L  N  R  P  Q  S  L  E  G  G  E  I  P  F  P  E  K  E  R  L  *  *  K  T  I  G  Y  K  T  T  S  Q  S  H  Y  V  L  P  N  I  Q  I  I  M  L  L  L  S  Q  E  *  L  R  L  S  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31524" stop="32102"/>
                    <exon start="32455" stop="32997"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WRGGLHMIIAGSGEEIPTVQAKDQRMIVESLISILPQQKDSVSCSFLLRLLRMANMLKVAPALITELEKRVGMQFEQATLADLLIPSYHKSETMYDIDLVQRLLEHFIIQEQTESSSPSRYPFHDKHMQDGSQRGTNLNAKMRVARLVDSYLTEVSRDRNLSLTKFQVLAEALPDSARTCDDGLYRAIDSYLKAHPTLSEHERKRLCRVMDCQKLSVDACMHAAQNERLPLRVVVQVLFSEQVKISNAIANISLKDEGETHYQPLVSHHKSLLEATPQSFQEGWTAAKKDINTLKFELETVKTKYVELQNDMVDLQRQFDKIAKPKQASAWTAGWKKLSKLTKTTNVETHDISSQIPNAEQTTKPRRWRNSIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="36850" PGL_stop="35823"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36850" e_stop="35823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36850" e_stop="35823" e_length="1028"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36850" stop="35985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36155" stop="35823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36155" stop="35823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36154" stop="35823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATTCTTGAGAGCTTGATTCCTGGGATAAAGAGCAAGGACCCGTTGTTGGTTATTGATGAAGCAATCAATTACTTGAAGTCTTTGAGGGGTAAAGCCAAAGCCTTAGGATCTGAGCTCCCTCAAGAGTATCCCCCAGCCTCTTGTTAAAGAACAGACTAGTATCCAACCCCTACAACAGTAGCATTATGACTTTTTAGGGGTACAGTTGCTTGGATAGTACAGAAAAGCCGTATATCATTATTTGGTTGAAAGTAGTTAAATTGTGAAGCATTTGCCATCCTCATCAGTCCTACAGTGCAACAAGTATTATTATCCACTAGAGGAAAAGATTTAGTGGGATTCTTTTGATCTTTTACTTGCAAGGGGTAGAACAAAAAGGGGAATGTCTATGGTCGACGAGGAATGATTATTTTTAGCTTTTGTGGTTAAGAAAGTAGAATTTCAAAGTTCAAAAGATGAGTGCTGTGAATGAGGGGGACCCTTTAAAATCTTGAGAAAACCATGGTTTCTATGCATGCGCATTTGGTGATTTGGGGTCCCACCATCCACCCTATTATGTTTCTTGAATTGAATGACTGTATGATGGTTTACTTTTGTGGTTGGTTATGTTGGGGTCAGTTTGTTGCAACTATTTCGCTTGGTATTTGCTATCTCTCACCAGCACAGGGTCAGAGTCTCCCACTGTTATAGGTCAGAATGAGTAGCTATGATGTTTTGATCTTTCTGTTGATTCCACAAAGGGCAGTGATGGCATTGATGTTGAAGAAGTGCATTGAATAAGGGGGCCCTTCTCTCTAAGCTTATCATGAAAAGGCTGATGGAGAGACATGATCAAATCTTGTCTTAAAGTTAGGTTTGTTTCCACTTTGGATGGGTGAGTTGTAGTTGGAGACTTGTGAGTTTTCAGCGTGGTGTCTTTTTATGAGCTTGATGGACCCTTGTGTTTCATCATATTATTGCTGTGTGTGTTGTCTTTATGCTTTTTTCTACTTTAAATGATACTAGTAATAAGATTTTTTTATTTTT</gDNA_template>
            <first_frame> G  F  L  R  A  *  F  L  G  *  R  A  R  T  R  C  W  L  L  M  K  Q  S  I  T  *  S  L  *  G  V  K  P  K  P  *  D  L  S  S  L  K  S  I  P  Q  P  L  V  K  E  Q  T  S  I  Q  P  L  Q  Q  *  H  Y  D  F  L  G  V  Q  L  L  G  *  Y  R  K  A  V  Y  H  Y  L  V  E  S  S  *  I  V  K  H  L  P  S  S  S  V  L  Q  C  N  K  Y  Y  Y  P  L  E  E  K  I  *  W  D  S  F  D  L  L  L  A  R  G  R  T  K  R  G  M  S  M  V  D  E  E  *  L  F  L  A  F  V  V  K  K  V  E  F  Q  S  S  K  D  E  C  C  E  *  G  G  P  F  K  I  L  R  K  P  W  F  L  C  M  R  I  W  *  F  G  V  P  P  S  T  L  L  C  F  L  N  *  M  T  V  *  W  F  T  F  V  V  G  Y  V  G  V  S  L  L  Q  L  F  R  L  V  F  A  I  S  H  Q  H  R  V  R  V  S  H  C  Y  R  S  E  *  V  A  M  M  F  *  S  F  C  *  F  H  K  G  Q  *  W  H  *  C  *  R  S  A  L  N  K  G  A  L  L  S  K  L  I  M  K  R  L  M  E  R  H  D  Q  I  L  S  *  S  *  V  C  F  H  F  G  W  V  S  C  S  W  R  L  V  S  F  Q  R  G  V  F  L  *  A  *  W  T  L  V  F  H  H  I  I  A  V  C  V  V  F  M  L  F  S  T  L  N  D  T  S  N  K  I  F  L  F   </first_frame>
            <second_frame>  D  S  *  E  L  D  S  W  D  K  E  Q  G  P  V  V  G  Y  *  *  S  N  Q  L  L  E  V  F  E  G  *  S  Q  S  L  R  I  *  A  P  S  R  V  S  P  S  L  L  L  K  N  R  L  V  S  N  P  Y  N  S  S  I  M  T  F  *  G  Y  S  C  L  D  S  T  E  K  P  Y  I  I  I  W  L  K  V  V  K  L  *  S  I  C  H  P  H  Q  S  Y  S  A  T  S  I  I  I  H  *  R  K  R  F  S  G  I  L  L  I  F  Y  L  Q  G  V  E  Q  K  G  E  C  L  W  S  T  R  N  D  Y  F  *  L  L  W  L  R  K  *  N  F  K  V  Q  K  M  S  A  V  N  E  G  D  P  L  K  S  *  E  N  H  G  F  Y  A  C  A  F  G  D  L  G  S  H  H  P  P  Y  Y  V  S  *  I  E  *  L  Y  D  G  L  L  L  W  L  V  M  L  G  S  V  C  C  N  Y  F  A  W  Y  L  L  S  L  T  S  T  G  S  E  S  P  T  V  I  G  Q  N  E  *  L  *  C  F  D  L  S  V  D  S  T  K  G  S  D  G  I  D  V  E  E  V  H  *  I  R  G  P  F  S  L  S  L  S  *  K  G  *  W  R  D  M  I  K  S  C  L  K  V  R  F  V  S  T  L  D  G  *  V  V  V  G  D  L  *  V  F  S  V  V  S  F  Y  E  L  D  G  P  L  C  F  I  I  L  L  L  C  V  L  S  L  C  F  F  L  L  *  M  I  L  V  I  R  F  F  Y  F  </second_frame>
            <third_frame>   I  L  E  S  L  I  P  G  I  K  S  K  D  P  L  L  V  I  D  E  A  I  N  Y  L  K  S  L  R  G  K  A  K  A  L  G  S  E  L  P  Q  E  Y  P  P  A  S  C  *  R  T  D  *  Y  P  T  P  T  T  V  A  L  *  L  F  R  G  T  V  A  W  I  V  Q  K  S  R  I  S  L  F  G  *  K  *  L  N  C  E  A  F  A  I  L  I  S  P  T  V  Q  Q  V  L  L  S  T  R  G  K  D  L  V  G  F  F  *  S  F  T  C  K  G  *  N  K  K  G  N  V  Y  G  R  R  G  M  I  I  F  S  F  C  G  *  E  S  R  I  S  K  F  K  R  *  V  L  *  M  R  G  T  L  *  N  L  E  K  T  M  V  S  M  H  A  H  L  V  I  W  G  P  T  I  H  P  I  M  F  L  E  L  N  D  C  M  M  V  Y  F  C  G  W  L  C  W  G  Q  F  V  A  T  I  S  L  G  I  C  Y  L  S  P  A  Q  G  Q  S  L  P  L  L  *  V  R  M  S  S  Y  D  V  L  I  F  L  L  I  P  Q  R  A  V  M  A  L  M  L  K  K  C  I  E  *  G  G  P  S  L  *  A  Y  H  E  K  A  D  G  E  T  *  S  N  L  V  L  K  L  G  L  F  P  L  W  M  G  E  L  *  L  E  T  C  E  F  S  A  W  C  L  F  M  S  L  M  D  P  C  V  S  S  Y  Y  C  C  V  C  C  L  Y  A  F  F  Y  F  K  *  Y  *  *  *  D  F  F  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36362" stop="36159"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLEKTMVSMHAHLVIWGPTIHPIMFLELNDCMMVYFCGWLCWGQFVATISLGICYLSPAQGQSLPLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="44206" PGL_stop="40029"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44195" e_stop="44071"/>
            <exon e_start="43865" e_stop="43832"/>
            <exon e_start="43747" e_stop="43686"/>
            <exon e_start="42901" e_stop="42849"/>
            <exon e_start="42295" e_stop="40923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44195" e_stop="44071" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43865" e_stop="43832" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43747" e_stop="43686" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42901" e_stop="42849" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="42295" e_stop="40923" e_length="1373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44195" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44195" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44194" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44193" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44193" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44193" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44192" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44191" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44188" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44184" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44173" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44171" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44171" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44168" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44155" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44148" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44147" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44146" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44111" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306384" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44103" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44103" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44086" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43852" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43719" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43714" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="41961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42879" stop="42849"/>
              <exon start="42295" stop="41955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41918" stop="41271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41918" stop="41547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41643" stop="40923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG : GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG : CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG : GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG : TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTATGGTCAACTCCAACTAATATGGGGTACTATTCTCCTTGTCGCATTCTATATGCTTGCCTATTGCCTTATGTATAATAGCCTAATGTTTCATCACAAAAATTGATAGCTTAAAAGAATTGGTGGAAACTCAATTTGACAAAACTAGGAGGAAACGATGGGAATGAGAATGTGAGTGTGATTGTCTTTGTGGTGTACCCTTGTGTCTTGCCCGTTATTCCCTTCTCCTGAAGGGTATGCTGGGTGGATCCCAGCTCTTATGCAGTGTTAAGAAACAAAGACCTGTAATTATCTGTGAGGCAACTCTTGATGTTCATGATAGTCTGAGGAATTTTCCAGTTTGTAGCTGGTGCTTGTCAACTTGATTGGCTTCTGTCAGGCAGTGTTTGATGACTATGTCATACTGTAATACCAGGTTCTTAATCACTGAATGTGTCATTTTGCAAGGAATGACAGCCTTCCCATTTATGAGCTATGATATATCTTATCCCTTTGCTGATGCACCATTCTAGTCCATGCGACATTGCCTGGAGCTTGAATGATCATATGAGCAATCTGGAATGACCTCATTACTTTGCTTTAGGCCACAAGTAGATGAGGTGATAATTTCAGAGATAGTGGTGTTTTTACGAGTCCAGCGGTGGAGTAATATTTGTCTTCATTGTATATCATGAAAACTTCGATTCCTAGTGTGGCATAGAAGAAGCCACACCATCTTAGATCCAGTTGATTGTGGCCAAAAAGGTGCACCATGAGGGTCTACCACATCAATCATTAGCTACCCACCTTATCATCAGTACCCCTCAATGGTTAGGGCTCTCCACAGTAAGATACTCATCTTGAAAGGAACTTTGTTGTTTGTTACATACTTTGTTTCTCAATTACCATTTAGAGATCAAATTGGTCTCTCTGGTAAGCCTTCAGTCATGTTAATTTGTTATTGTCTCACAACTCTACACATCTCTACTTCTGTGTCACTGCCAATTGTTACAATGTAAATAAATCAGCAACAAACTAACAAATCCCTT</gDNA_template>
            <first_frame> Q  E  V  G  D  F  I  K  I  T  G  K  N  G  S  G  E  G  S  Y  Q  S  R  K  W  P  Q  T  A  A  W  S  N  C  Y  R  P  L  H  W  L  R :   E  R  *  R  P  E  S  E  V  L  E  :  H  *  G  S  R  P  A  A  F  L  F  Q  D  R  P  R  Q  S  Y  Q  R :   M  G  *  R  S  T  G  H  A  I  G  R  S  C  S  I  N   : V  H  P  *  L  C  L  W  C  W  W  I  S  S  M  G  Y  S  A  Q  L  S  S  G  F  *  D  *  S  P  R  C  T  M  S  N  L  L  T  F  G  H  S  R  W  S  C  C  T  L  Y  S  R  Q  L  E  G  I  R  T  A  H  V  L  F  C  S  N  A  T  C  *  N  R  L  R  Q  *  *  M  L  *  S  F  C  L  D  N  G  L  L  *  D  Y  *  F  A  L  Q  D  K  L  V  S  N  E  I  *  Y  G  M  D  V  R  V  C  M  V  N  S  N  *  Y  G  V  L  F  S  L  S  H  S  I  C  L  P  I  A  L  C  I  I  A  *  C  F  I  T  K  I  D  S  L  K  E  L  V  E  T  Q  F  D  K  T  R  R  K  R  W  E  *  E  C  E  C  D  C  L  C  G  V  P  L  C  L  A  R  Y  S  L  L  L  K  G  M  L  G  G  S  Q  L  L  C  S  V  K  K  Q  R  P  V  I  I  C  E  A  T  L  D  V  H  D  S  L  R  N  F  P  V  C  S  W  C  L  S  T  *  L  A  S  V  R  Q  C  L  M  T  M  S  Y  C  N  T  R  F  L  I  T  E  C  V  I  L  Q  G  M  T  A  F  P  F  M  S  Y  D  I  S  Y  P  F  A  D  A  P  F  *  S  M  R  H  C  L  E  L  E  *  S  Y  E  Q  S  G  M  T  S  L  L  C  F  R  P  Q  V  D  E  V  I  I  S  E  I  V  V  F  L  R  V  Q  R  W  S  N  I  C  L  H  C  I  S  *  K  L  R  F  L  V  W  H  R  R  S  H  T  I  L  D  P  V  D  C  G  Q  K  G  A  P  *  G  S  T  T  S  I  I  S  Y  P  P  Y  H  Q  Y  P  S  M  V  R  A  L  H  S  K  I  L  I  L  K  G  T  L  L  F  V  T  Y  F  V  S  Q  L  P  F  R  D  Q  I  G  L  S  G  K  P  S  V  M  L  I  C  Y  C  L  T  T  L  H  I  S  T  S  V  S  L  P  I  V  T  M  *  I  N  Q  Q  Q  T  N  K  S  L </first_frame>
            <second_frame>  K  K  S  E  I  S  S  K  S  P  E  K  M  G  V  E  K  E  V  I  R  A  G  N  G  P  K  P  Q  P  G  Q  T  V  T  V  H  C  T  G  Y   : G  K  D  R  D  L  S  Q  K  F  W  S :   T  K  D  P  G  Q  Q  P  F  S  F  K  I  G  Q  G  K  V  I  K   : G  W  D  E  G  V  L  G  M  Q  L  G  E  V  A  R  L  T  :  C  T  P  D  Y  A  Y  G  A  G  G  F  P  A  W  G  I  Q  P  N  S  V  L  V  F  E  I  E  V  L  G  A  Q  *  A  I  C  *  H  L  G  I  P  D  G  A  V  V  H  Y  T  V  D  S  L  R  V  S  E  L  L  M  Y  S  F  A  L  M  Q  L  V  E  T  D  *  G  N  N  K  C  F  E  A  F  V  W  I  M  V  F  Y  E  T  T  N  L  P  C  K  T  N  *  L  V  M  K  Y  N  M  E  W  M  *  E  F  V  W  S  T  P  T  N  M  G  Y  Y  S  P  C  R  I  L  Y  A  C  L  L  P  Y  V  *  *  P  N  V  S  S  Q  K  L  I  A  *  K  N  W  W  K  L  N  L  T  K  L  G  G  N  D  G  N  E  N  V  S  V  I  V  F  V  V  Y  P  C  V  L  P  V  I  P  F  S  *  R  V  C  W  V  D  P  S  S  Y  A  V  L  R  N  K  D  L  *  L  S  V  R  Q  L  L  M  F  M  I  V  *  G  I  F  Q  F  V  A  G  A  C  Q  L  D  W  L  L  S  G  S  V  *  *  L  C  H  T  V  I  P  G  S  *  S  L  N  V  S  F  C  K  E  *  Q  P  S  H  L  *  A  M  I  Y  L  I  P  L  L  M  H  H  S  S  P  C  D  I  A  W  S  L  N  D  H  M  S  N  L  E  *  P  H  Y  F  A  L  G  H  K  *  M  R  *  *  F  Q  R  *  W  C  F  Y  E  S  S  G  G  V  I  F  V  F  I  V  Y  H  E  N  F  D  S  *  C  G  I  E  E  A  T  P  S  *  I  Q  L  I  V  A  K  K  V  H  H  E  G  L  P  H  Q  S  L  A  T  H  L  I  I  S  T  P  Q  W  L  G  L  S  T  V  R  Y  S  S  *  K  E  L  C  C  L  L  H  T  L  F  L  N  Y  H  L  E  I  K  L  V  S  L  V  S  L  Q  S  C  *  F  V  I  V  S  Q  L  Y  T  S  L  L  L  C  H  C  Q  L  L  Q  C  K  *  I  S  N  K  L  T  N  P   </second_frame>
            <third_frame>   R  S  R  R  F  H  Q  N  H  R  K  K  W  E  W  R  R  K  L  S  E  P  E  M  A  P  N  R  S  L  V  K  L  L  P  S  T  A  L  V  T  :  G  K  I  E  T  *  V  R  S  S  G   : A  L  R  I  Q  A  S  S  L  S  L  S  R  S  A  K  A  K  L  S  K  :  D  G  M  K  E  Y  W  A  C  N  W  E  K  L  L  D  *  R :   A  P  L  I  M  L  M  V  L  V  D  F  Q  H  G  V  F  S  P  T  Q  F  W  F  L  R  L  K  S  *  V  H  N  E  Q  F  A  N  I  W  A  F  P  M  E  L  L  Y  T  I  Q  *  T  A  *  G  Y  Q  N  C  S  C  T  L  L  L  *  C  N  L  L  K  Q  I  K  A  I  I  N  A  L  K  L  L  S  G  *  W  S  S  M  R  L  L  I  C  L  A  R  Q  I  S  *  *  *  N  I  I  W  N  G  C  K  S  L  Y  G  Q  L  Q  L  I  W  G  T  I  L  L  V  A  F  Y  M  L  A  Y  C  L  M  Y  N  S  L  M  F  H  H  K  N  *  *  L  K  R  I  G  G  N  S  I  *  Q  N  *  E  E  T  M  G  M  R  M  *  V  *  L  S  L  W  C  T  L  V  S  C  P  L  F  P  S  P  E  G  Y  A  G  W  I  P  A  L  M  Q  C  *  E  T  K  T  C  N  Y  L  *  G  N  S  *  C  S  *  *  S  E  E  F  S  S  L  *  L  V  L  V  N  L  I  G  F  C  Q  A  V  F  D  D  Y  V  I  L  *  Y  Q  V  L  N  H  *  M  C  H  F  A  R  N  D  S  L  P  I  Y  E  L  *  Y  I  L  S  L  C  *  C  T  I  L  V  H  A  T  L  P  G  A  *  M  I  I  *  A  I  W  N  D  L  I  T  L  L  *  A  T  S  R  *  G  D  N  F  R  D  S  G  V  F  T  S  P  A  V  E  *  Y  L  S  S  L  Y  I  M  K  T  S  I  P  S  V  A  *  K  K  P  H  H  L  R  S  S  *  L  W  P  K  R  C  T  M  R  V  Y  H  I  N  H  *  L  P  T  L  S  S  V  P  L  N  G  *  G  S  P  Q  *  D  T  H  L  E  R  N  F  V  V  C  Y  I  L  C  F  S  I  T  I  *  R  S  N  W  S  L  W  *  A  F  S  H  V  N  L  L  L  S  H  N  S  T  H  L  Y  F  C  V  T  A  N  C  Y  N  V  N  K  S  A  T  N  *  Q  I  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44194" stop="44071"/>
                    <exon start="43865" stop="43832"/>
                    <exon start="43747" stop="43686"/>
                    <exon start="42901" stop="42849"/>
                    <exon start="42295" stop="42194"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSEISSKSPEKMGVEKEVIRAGNGPKPQPGQTVTVHCTGYGKDRDLSQKFWSTKDPGQQPFSFKIGQGKVIKGWDEGVLGMQLGEVARLTCTPDYAYGAGGFPAWGIQPNSVLVFEIEVLGAQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41195" stop="40953"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSTTSIISYPPYHQYPSMVRALHSKILILKGTLLFVTYFVSQLPFRDQIGLSGKPSVMLICYCLTTLHISTSVSLPIVTM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41783" stop="41586"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECECDCLCGVPLCLARYSLLLKGMLGGSQLLCSVKKQRPVIICEATLDVHDSLRNFPVCSWCLST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44194" e_stop="44071"/>
            <exon e_start="43865" e_stop="43832"/>
            <exon e_start="43747" e_stop="43686"/>
            <exon e_start="42901" e_stop="42849"/>
            <exon e_start="42295" e_stop="42032"/>
            <exon e_start="41841" e_stop="41832"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.235" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44194" e_stop="44071" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43865" e_stop="43832" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43747" e_stop="43686" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42901" e_stop="42849" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42295" e_stop="42032" e_length="264"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.235">
            <gDNA_intron_boundary i_start="42031" i_stop="41842" i_length="190"/>
          </intron>
          <exon e_serial="6" e_score="0.600">
            <gDNA_exon_boundary e_start="41841" e_stop="41832" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44194" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44193" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44193" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44193" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44192" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44191" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42032"/>
              <exon start="41841" stop="41832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44086" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335436" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG : GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG : CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG : GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG : TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATG : CTTAAAAGAA</gDNA_template>
            <first_frame> K  K  S  E  I  S  S  K  S  P  E  K  M  G  V  E  K  E  V  I  R  A  G  N  G  P  K  P  Q  P  G  Q  T  V  T  V  H  C  T  G  Y   : G  K  D  R  D  L  S  Q  K  F  W  S :   T  K  D  P  G  Q  Q  P  F  S  F  K  I  G  Q  G  K  V  I  K   : G  W  D  E  G  V  L  G  M  Q  L  G  E  V  A  R  L  T  :  C  T  P  D  Y  A  Y  G  A  G  G  F  P  A  W  G  I  Q  P  N  S  V  L  V  F  E  I  E  V  L  G  A  Q  *  A  I  C  *  H  L  G  I  P  D  G  A  V  V  H  Y  T  V  D  S  L  R  V  S  E  L  L  M  Y  S  F  A  L  M  Q  L  V  E  T  D  *  G  N  N  K  C  F  E  A  F  V  W  I  M  :  L  K  R  </first_frame>
            <second_frame>  R  S  R  R  F  H  Q  N  H  R  K  K  W  E  W  R  R  K  L  S  E  P  E  M  A  P  N  R  S  L  V  K  L  L  P  S  T  A  L  V  T  :  G  K  I  E  T  *  V  R  S  S  G   : A  L  R  I  Q  A  S  S  L  S  L  S  R  S  A  K  A  K  L  S  K  :  D  G  M  K  E  Y  W  A  C  N  W  E  K  L  L  D  *  R :   A  P  L  I  M  L  M  V  L  V  D  F  Q  H  G  V  F  S  P  T  Q  F  W  F  L  R  L  K  S  *  V  H  N  E  Q  F  A  N  I  W  A  F  P  M  E  L  L  Y  T  I  Q  *  T  A  *  G  Y  Q  N  C  S  C  T  L  L  L  *  C  N  L  L  K  Q  I  K  A  I  I  N  A  L  K  L  L  S  G  *  C :   L  K  E </second_frame>
            <third_frame>   E  V  G  D  F  I  K  I  T  G  K  N  G  S  G  E  G  S  Y  Q  S  R  K  W  P  Q  T  A  A  W  S  N  C  Y  R  P  L  H  W  L  R :   E  R  *  R  P  E  S  E  V  L  E  :  H  *  G  S  R  P  A  A  F  L  F  Q  D  R  P  R  Q  S  Y  Q  R :   M  G  *  R  S  T  G  H  A  I  G  R  S  C  S  I  N   : V  H  P  *  L  C  L  W  C  W  W  I  S  S  M  G  Y  S  A  Q  L  S  S  G  F  *  D  *  S  P  R  C  T  M  S  N  L  L  T  F  G  H  S  R  W  S  C  C  T  L  Y  S  R  Q  L  E  G  I  R  T  A  H  V  L  F  C  S  N  A  T  C  *  N  R  L  R  Q  *  *  M  L  *  S  F  C  L  D  N   : A  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44194" stop="44071"/>
                    <exon start="43865" stop="43832"/>
                    <exon start="43747" stop="43686"/>
                    <exon start="42901" stop="42849"/>
                    <exon start="42295" stop="42194"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSEISSKSPEKMGVEKEVIRAGNGPKPQPGQTVTVHCTGYGKDRDLSQKFWSTKDPGQQPFSFKIGQGKVIKGWDEGVLGMQLGEVARLTCTPDYAYGAGGFPAWGIQPNSVLVFEIEVLGAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="44206" e_stop="44071"/>
            <exon e_start="43865" e_stop="43832"/>
            <exon e_start="43747" e_stop="43686"/>
            <exon e_start="42901" e_stop="42849"/>
            <exon e_start="42295" e_stop="42032"/>
            <exon e_start="40067" e_stop="40029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.564"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44206" e_stop="44071" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44070" i_stop="43866" i_length="205"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43865" e_stop="43832" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43831" i_stop="43748" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43747" e_stop="43686" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43685" i_stop="42902" i_length="784"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42901" e_stop="42849" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42848" i_stop="42296" i_length="553"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42295" e_stop="42032" e_length="264"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="42031" i_stop="40068" i_length="1964"/>
          </intron>
          <exon e_serial="6" e_score="0.564">
            <gDNA_exon_boundary e_start="40067" e_stop="40029" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44206" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42032"/>
              <exon start="40067" stop="40029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44194" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44193" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44193" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44193" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44192" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44191" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44086" stop="44071"/>
              <exon start="43865" stop="43832"/>
              <exon start="43747" stop="43686"/>
              <exon start="42901" stop="42849"/>
              <exon start="42295" stop="42097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335436" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCCTAAATCAAGAAGTCGGAGATTTCATCAAAATCACCGGAAAAAATGGGAGTGGAGAAGGAAGTTATCAGAGCCGGAAATGGCCCCAAACCGCAGCCTGGTCAAACTGTTACCGTCCACTGCACTGGTTACG : GGAAAGATAGAGACCTGAGTCAGAAGTTCTGGAG : CACTAAGGATCCAGGCCAGCAGCCTTTCTCTTTCAAGATCGGCCAAGGCAAAGTTATCAAAG : GATGGGATGAAGGAGTACTGGGCATGCAATTGGGAGAAGTTGCTCGATTAACG : TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATG : GTATTTCAACTCAAACGTGAAAAAAACAACAAGAAGAAA</gDNA_template>
            <first_frame> K  P  *  I  K  K  S  E  I  S  S  K  S  P  E  K  M  G  V  E  K  E  V  I  R  A  G  N  G  P  K  P  Q  P  G  Q  T  V  T  V  H  C  T  G  Y   : G  K  D  R  D  L  S  Q  K  F  W  S :   T  K  D  P  G  Q  Q  P  F  S  F  K  I  G  Q  G  K  V  I  K   : G  W  D  E  G  V  L  G  M  Q  L  G  E  V  A  R  L  T  :  C  T  P  D  Y  A  Y  G  A  G  G  F  P  A  W  G  I  Q  P  N  S  V  L  V  F  E  I  E  V  L  G  A  Q  *  A  I  C  *  H  L  G  I  P  D  G  A  V  V  H  Y  T  V  D  S  L  R  V  S  E  L  L  M  Y  S  F  A  L  M  Q  L  V  E  T  D  *  G  N  N  K  C  F  E  A  F  V  W  I  M  :  V  F  Q  L  K  R  E  K  N  N  K  K  K </first_frame>
            <second_frame>  N  P  K  S  R  S  R  R  F  H  Q  N  H  R  K  K  W  E  W  R  R  K  L  S  E  P  E  M  A  P  N  R  S  L  V  K  L  L  P  S  T  A  L  V  T  :  G  K  I  E  T  *  V  R  S  S  G   : A  L  R  I  Q  A  S  S  L  S  L  S  R  S  A  K  A  K  L  S  K  :  D  G  M  K  E  Y  W  A  C  N  W  E  K  L  L  D  *  R :   A  P  L  I  M  L  M  V  L  V  D  F  Q  H  G  V  F  S  P  T  Q  F  W  F  L  R  L  K  S  *  V  H  N  E  Q  F  A  N  I  W  A  F  P  M  E  L  L  Y  T  I  Q  *  T  A  *  G  Y  Q  N  C  S  C  T  L  L  L  *  C  N  L  L  K  Q  I  K  A  I  I  N  A  L  K  L  L  S  G  *  W :   Y  F  N  S  N  V  K  K  T  T  R  R   </second_frame>
            <third_frame>   T  L  N  Q  E  V  G  D  F  I  K  I  T  G  K  N  G  S  G  E  G  S  Y  Q  S  R  K  W  P  Q  T  A  A  W  S  N  C  Y  R  P  L  H  W  L  R :   E  R  *  R  P  E  S  E  V  L  E  :  H  *  G  S  R  P  A  A  F  L  F  Q  D  R  P  R  Q  S  Y  Q  R :   M  G  *  R  S  T  G  H  A  I  G  R  S  C  S  I  N   : V  H  P  *  L  C  L  W  C  W  W  I  S  S  M  G  Y  S  A  Q  L  S  S  G  F  *  D  *  S  P  R  C  T  M  S  N  L  L  T  F  G  H  S  R  W  S  C  C  T  L  Y  S  R  Q  L  E  G  I  R  T  A  H  V  L  F  C  S  N  A  T  C  *  N  R  L  R  Q  *  *  M  L  *  S  F  C  L  D  N   : G  I  S  T  Q  T  *  K  K  Q  Q  E  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44197" stop="44071"/>
                    <exon start="43865" stop="43832"/>
                    <exon start="43747" stop="43686"/>
                    <exon start="42901" stop="42849"/>
                    <exon start="42295" stop="42194"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKKSEISSKSPEKMGVEKEVIRAGNGPKPQPGQTVTVHCTGYGKDRDLSQKFWSTKDPGQQPFSFKIGQGKVIKGWDEGVLGMQLGEVARLTCTPDYAYGAGGFPAWGIQPNSVLVFEIEVLGAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="42565" e_stop="42556"/>
            <exon e_start="42295" e_stop="41927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.378" acc_prob="0.992" e_score="0.714"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.714">
            <gDNA_exon_boundary e_start="42565" e_stop="42556" e_length="10"/>
          </exon>
          <intron i_serial="1" don_prob="0.378" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42555" i_stop="42296" i_length="260"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42295" e_stop="41927" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42565" stop="42556"/>
              <exon start="42295" stop="41927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42565" stop="42556"/>
              <exon start="42295" stop="41949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42562" stop="42556"/>
              <exon start="42295" stop="41949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGATTGATG : TGCACCCCTGATTATGCTTATGGTGCTGGTGGATTTCCAGCATGGGGTATTCAGCCCAACTCAGTTCTGGTTTTTGAGATTGAAGTCCTAGGTGCACAATGAGCAATTTGCTAACATTTGGGCATTCCCGATGGAGCTGTTGTACACTATACAGTAGACAGCTTGAGGGTATCAGAACTGCTCATGTACTCTTTTGCTCTAATGCAACTTGTTGAAACAGATTAAGGCAATAATAAATGCTTTGAAGCTTTTGTCTGGATAATGGTCTTCTATGAGACTACTAATTTGCCTTGCAAGACAAATTAGTTAGTAATGAAATATAATATGGAATGGATGTAAGAGTTTGTATGGTCAACTCCAACTAATATG</gDNA_template>
            <first_frame> W  I  D   : V  H  P  *  L  C  L  W  C  W  W  I  S  S  M  G  Y  S  A  Q  L  S  S  G  F  *  D  *  S  P  R  C  T  M  S  N  L  L  T  F  G  H  S  R  W  S  C  C  T  L  Y  S  R  Q  L  E  G  I  R  T  A  H  V  L  F  C  S  N  A  T  C  *  N  R  L  R  Q  *  *  M  L  *  S  F  C  L  D  N  G  L  L  *  D  Y  *  F  A  L  Q  D  K  L  V  S  N  E  I  *  Y  G  M  D  V  R  V  C  M  V  N  S  N  *  Y  </first_frame>
            <second_frame>  G  L  M  :  C  T  P  D  Y  A  Y  G  A  G  G  F  P  A  W  G  I  Q  P  N  S  V  L  V  F  E  I  E  V  L  G  A  Q  *  A  I  C  *  H  L  G  I  P  D  G  A  V  V  H  Y  T  V  D  S  L  R  V  S  E  L  L  M  Y  S  F  A  L  M  Q  L  V  E  T  D  *  G  N  N  K  C  F  E  A  F  V  W  I  M  V  F  Y  E  T  T  N  L  P  C  K  T  N  *  L  V  M  K  Y  N  M  E  W  M  *  E  F  V  W  S  T  P  T  N  M </second_frame>
            <third_frame>   D  *  C :   A  P  L  I  M  L  M  V  L  V  D  F  Q  H  G  V  F  S  P  T  Q  F  W  F  L  R  L  K  S  *  V  H  N  E  Q  F  A  N  I  W  A  F  P  M  E  L  L  Y  T  I  Q  *  T  A  *  G  Y  Q  N  C  S  C  T  L  L  L  *  C  N  L  L  K  Q  I  K  A  I  I  N  A  L  K  L  L  S  G  *  W  S  S  M  R  L  L  I  C  L  A  R  Q  I  S  *  *  *  N  I  I  W  N  G  C  K  S  L  Y  G  Q  L  Q  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0037D10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="50776" PGL_stop="51594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50776" e_stop="51594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50776" e_stop="51594" e_length="819"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50776" stop="51594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCTTCAACATTTTTTTCTCTTAAAAGACAAAAAAAAGGTTATTTTTTCCCCTTAATTGTTGATGTTAGTTGAGTTATAGATCATCTAATTTCATTTCTGGGTGTACCTAGAAACTCAATTTTTCATGGGGTTTTCTTGACCTTTTTATTGAATGCTTCCAACAGAAAAAATCATGGAGGTTGCTAGAATTAGACAATTGTTGCTCCTTTGGAGTAGAATCAAATCTACCCGTGTTTCTCTTGTGGGTGGCAATCACACCGCCGCTAGGTTTTGTACTCGCTAAATTCACCTTTCTTCCGTCGCTGGATTTTCCCCTTTCTCTCTCTCTCTCTCTCTCTCTTCTTGTAGCACAAGGTACGATCAGTTTTTACAGACTCTTCCGATAGGTTTGTTGTAAAAGCATGGATTTTGGTTTTGTGTATTGCCCCAAAAGGGGGGAAATCAAGGGGAATCATTTTCCCGAGTTGAAAATTGGGTTGCATCAAGACGCCGTTTTGATTATTAAGCTACCAGATTCGAGGGCTTTAAGGATTATGTCACGGTCTTTGTTCTTTGCAATGGTTCTTTTCATATTGCCGTCAATTGGGTCCATTTTAAGAGGCTCATTCGATGTAATTGATGATTCTTATGTGAATTCTGATGGGAGGGACTTCAATGTGTTGCATAATCTTTTTCGCGATTTGGCAGATGAAGGCCTTGTCAAGAAGGGGCATAAAGGACTTGTTTTGAGTTCTGAGAATGATCGTTTGATCAAAGATTTGGAATTGTCGAATGACAATGTGGTTGATTTGGTGCTTGATTCGGATATGGATTACA</gDNA_template>
            <first_frame> L  S  S  T  F  F  S  L  K  R  Q  K  K  G  Y  F  F  P  L  I  V  D  V  S  *  V  I  D  H  L  I  S  F  L  G  V  P  R  N  S  I  F  H  G  V  F  L  T  F  L  L  N  A  S  N  R  K  N  H  G  G  C  *  N  *  T  I  V  A  P  L  E  *  N  Q  I  Y  P  C  F  S  C  G  W  Q  S  H  R  R  *  V  L  Y  S  L  N  S  P  F  F  R  R  W  I  F  P  F  L  S  L  S  L  S  L  F  L  *  H  K  V  R  S  V  F  T  D  S  S  D  R  F  V  V  K  A  W  I  L  V  L  C  I  A  P  K  G  G  K  S  R  G  I  I  F  P  S  *  K  L  G  C  I  K  T  P  F  *  L  L  S  Y  Q  I  R  G  L  *  G  L  C  H  G  L  C  S  L  Q  W  F  F  S  Y  C  R  Q  L  G  P  F  *  E  A  H  S  M  *  L  M  I  L  M  *  I  L  M  G  G  T  S  M  C  C  I  I  F  F  A  I  W  Q  M  K  A  L  S  R  R  G  I  K  D  L  F  *  V  L  R  M  I  V  *  S  K  I  W  N  C  R  M  T  M  W  L  I  W  C  L  I  R  I  W  I  T </first_frame>
            <second_frame>  S  L  Q  H  F  F  L  L  K  D  K  K  K  V  I  F  S  P  *  L  L  M  L  V  E  L  *  I  I  *  F  H  F  W  V  Y  L  E  T  Q  F  F  M  G  F  S  *  P  F  Y  *  M  L  P  T  E  K  I  M  E  V  A  R  I  R  Q  L  L  L  L  W  S  R  I  K  S  T  R  V  S  L  V  G  G  N  H  T  A  A  R  F  C  T  R  *  I  H  L  S  S  V  A  G  F  S  P  F  S  L  S  L  S  L  S  S  C  S  T  R  Y  D  Q  F  L  Q  T  L  P  I  G  L  L  *  K  H  G  F  W  F  C  V  L  P  Q  K  G  G  N  Q  G  E  S  F  S  R  V  E  N  W  V  A  S  R  R  R  F  D  Y  *  A  T  R  F  E  G  F  K  D  Y  V  T  V  F  V  L  C  N  G  S  F  H  I  A  V  N  W  V  H  F  K  R  L  I  R  C  N  *  *  F  L  C  E  F  *  W  E  G  L  Q  C  V  A  *  S  F  S  R  F  G  R  *  R  P  C  Q  E  G  A  *  R  T  C  F  E  F  *  E  *  S  F  D  Q  R  F  G  I  V  E  *  Q  C  G  *  F  G  A  *  F  G  Y  G  L   </second_frame>
            <third_frame>   L  F  N  I  F  F  S  *  K  T  K  K  R  L  F  F  P  L  N  C  *  C  *  L  S  Y  R  S  S  N  F  I  S  G  C  T  *  K  L  N  F  S  W  G  F  L  D  L  F  I  E  C  F  Q  Q  K  K  S  W  R  L  L  E  L  D  N  C  C  S  F  G  V  E  S  N  L  P  V  F  L  L  W  V  A  I  T  P  P  L  G  F  V  L  A  K  F  T  F  L  P  S  L  D  F  P  L  S  L  S  L  S  L  S  L  L  V  A  Q  G  T  I  S  F  Y  R  L  F  R  *  V  C  C  K  S  M  D  F  G  F  V  Y  C  P  K  R  G  E  I  K  G  N  H  F  P  E  L  K  I  G  L  H  Q  D  A  V  L  I  I  K  L  P  D  S  R  A  L  R  I  M  S  R  S  L  F  F  A  M  V  L  F  I  L  P  S  I  G  S  I  L  R  G  S  F  D  V  I  D  D  S  Y  V  N  S  D  G  R  D  F  N  V  L  H  N  L  F  R  D  L  A  D  E  G  L  V  K  K  G  H  K  G  L  V  L  S  S  E  N  D  R  L  I  K  D  L  E  L  S  N  D  N  V  V  D  L  V  L  D  S  D  M  D  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51165" stop="51593"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCCKSMDFGFVYCPKRGEIKGNHFPELKIGLHQDAVLIIKLPDSRALRIMSRSLFFAMVLFILPSIGSILRGSFDVIDDSYVNSDGRDFNVLHNLFRDLADEGLVKKGHKGLVLSSENDRLIKDLELSNDNVVDLVLDSDMDY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50889" stop="51164"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLNFSWGFLDLFIECFQQKKSWRLLELDNCCSFGVESNLPVFLLWVAITPPLGFVLAKFTFLPSLDFPLSLSLSLSLLVAQGTISFYRLFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="52551" PGL_stop="53316"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52551" e_stop="52559"/>
            <exon e_start="52778" e_stop="53316"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.945" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="52551" e_stop="52559" e_length="9"/>
          </exon>
          <intron i_serial="1" don_prob="0.945" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52560" i_stop="52777" i_length="218"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="52778" e_stop="53316" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52551" stop="52559"/>
              <exon start="52778" stop="53315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393197" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52551" stop="52559"/>
              <exon start="52778" stop="53304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345346" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53008" stop="53316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280830" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTGTTG : TAATATTGAAACAACGATTAATCAGTACATAGCTTAGATACATAAATAGCAACAAACATTAAGCAACCATTGCTTCAGTAAGCAATTTGAATTTAACCAATAGAAATACATCAATTAGAAGTTAATTATAAAGATACGGATAGTTGAGAGTCGTGTGTATGAAGTTACATTTCAAGGAGTAGTGGTTTGTGTGGCATCAGCTGGAGTGTTGGGGAATGGGGGAAATGGAAAAGTAGGCAGACCACCAAAGGCGCCGCCACCAGTTGATGGAGTAGGAAAACCTGGAGTCGTAGGCATAGGAAATGAGGGGAAACCACCACCAGTTGATGGAGTCGTAGGCATAGGAAATGAGGGGAAACCACCACCAGTGGATGGAGTAGTAGGCATAGGGAAACCACCAAATTGCTGAAGACGTCGAGCTGCTGTGGCTTGCTCAATTGACATTACTGATACAACAAGCACCACAACGGCTATCATGACATTTATCTTCACCATTTTTTGTTGTTGTAAAAAAATACTACTCTTTTTGTTGAATTTGC</gDNA_template>
            <first_frame> F  L  L  :  *  Y  *  N  N  D  *  S  V  H  S  L  D  T  *  I  A  T  N  I  K  Q  P  L  L  Q  *  A  I  *  I  *  P  I  E  I  H  Q  L  E  V  N  Y  K  D  T  D  S  *  E  S  C  V  *  S  Y  I  S  R  S  S  G  L  C  G  I  S  W  S  V  G  E  W  G  K  W  K  S  R  Q  T  T  K  G  A  A  T  S  *  W  S  R  K  T  W  S  R  R  H  R  K  *  G  E  T  T  T  S  *  W  S  R  R  H  R  K  *  G  E  T  T  T  S  G  W  S  S  R  H  R  E  T  T  K  L  L  K  T  S  S  C  C  G  L  L  N  *  H  Y  *  Y  N  K  H  H  N  G  Y  H  D  I  Y  L  H  H  F  L  L  L  *  K  N  T  T  L  F  V  E  F   </first_frame>
            <second_frame>  F  C  C :   N  I  E  T  T  I  N  Q  Y  I  A  *  I  H  K  *  Q  Q  T  L  S  N  H  C  F  S  K  Q  F  E  F  N  Q  *  K  Y  I  N  *  K  L  I  I  K  I  R  I  V  E  S  R  V  Y  E  V  T  F  Q  G  V  V  V  C  V  A  S  A  G  V  L  G  N  G  G  N  G  K  V  G  R  P  P  K  A  P  P  P  V  D  G  V  G  K  P  G  V  V  G  I  G  N  E  G  K  P  P  P  V  D  G  V  V  G  I  G  N  E  G  K  P  P  P  V  D  G  V  V  G  I  G  K  P  P  N  C  *  R  R  R  A  A  V  A  C  S  I  D  I  T  D  T  T  S  T  T  T  A  I  M  T  F  I  F  T  I  F  C  C  C  K  K  I  L  L  F  L  L  N  L  </second_frame>
            <third_frame>   S  V   : V  I  L  K  Q  R  L  I  S  T  *  L  R  Y  I  N  S  N  K  H  *  A  T  I  A  S  V  S  N  L  N  L  T  N  R  N  T  S  I  R  S  *  L  *  R  Y  G  *  L  R  V  V  C  M  K  L  H  F  K  E  *  W  F  V  W  H  Q  L  E  C  W  G  M  G  E  M  E  K  *  A  D  H  Q  R  R  R  H  Q  L  M  E  *  E  N  L  E  S  *  A  *  E  M  R  G  N  H  H  Q  L  M  E  S  *  A  *  E  M  R  G  N  H  H  Q  W  M  E  *  *  A  *  G  N  H  Q  I  A  E  D  V  E  L  L  W  L  A  Q  L  T  L  L  I  Q  Q  A  P  Q  R  L  S  *  H  L  S  S  P  F  F  V  V  V  K  K  Y  Y  S  F  C  *  I  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52896" stop="53186"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLIIKIRIVESRVYEVTFQGVVVCVASAGVLGNGGNGKVGRPPKAPPPVDGVGKPGVVGIGNEGKPPPVDGVVGIGNEGKPPPVDGVVGIGKPPNC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="53468" PGL_stop="52675"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53468" e_stop="52761"/>
            <exon e_start="52701" e_stop="52675"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.556" e_score="0.988"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="53468" e_stop="52761" e_length="708"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.556">
            <gDNA_intron_boundary i_start="52760" i_stop="52702" i_length="59"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="52701" e_stop="52675" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53468" stop="52799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53314" stop="52800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53312" stop="52796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53312" stop="52796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53310" stop="52761"/>
              <exon start="52701" stop="52690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53309" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53308" stop="52800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53305" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53305" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53305" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53305" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53302" stop="52778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53293" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53290" stop="52768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53288" stop="52761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53288" stop="52761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53288" stop="52769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53288" stop="52840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53257" stop="52761"/>
              <exon start="52701" stop="52686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53237" stop="52761"/>
              <exon start="52701" stop="52675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53065" stop="52761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53026" stop="52761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAATTGACAGCTAATTAAGGAGAGATGGATTTCAGTTGATACTCTCAACCACATAGGAGGGTGAACAAATTGAATGCTCATTATGTTTCTATTCCCATACATACTACTATATAACTTACCCAAAACCCCTGCACATATACTTAACAAGAAGCAAATTCAACAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCAATATTACTACCTTCATTTATCAT : AGATGAAATAATAGAAAGAAAAGAAAC</gDNA_template>
            <first_frame> L  N  *  Q  L  I  K  E  R  W  I  S  V  D  T  L  N  H  I  G  G  *  T  N  *  M  L  I  M  F  L  F  P  Y  I  L  L  Y  N  L  P  K  T  P  A  H  I  L  N  K  K  Q  I  Q  Q  K  E  *  Y  F  F  T  T  T  K  N  G  E  D  K  C  H  D  S  R  C  G  A  C  C  I  S  N  V  N  *  A  S  H  S  S  S  T  S  S  A  I  W  W  F  P  Y  A  Y  Y  S  I  H  W  W  W  F  P  L  I  S  Y  A  Y  D  S  I  N  W  W  W  F  P  L  I  S  Y  A  Y  D  S  R  F  S  Y  S  I  N  W  W  R  R  L  W  W  S  A  Y  F  S  I  S  P  I  P  Q  H  S  S  *  C  H  T  N  H  Y  S  L  K  C  N  F  I  H  T  T  L  N  Y  P  Y  L  Y  N  *  L  L  I  D  V  F  L  L  V  K  F  K  L  L  T  E  A  M  V  A  *  C  L  L  L  F  M  Y  L  S  Y  V  L  I  N  R  C  F  N  I  T  T  F  I  Y  H  :  R  *  N  N  R  K  K  R  N </first_frame>
            <second_frame>  *  I  D  S  *  L  R  R  D  G  F  Q  L  I  L  S  T  T  *  E  G  E  Q  I  E  C  S  L  C  F  Y  S  H  T  Y  Y  Y  I  T  Y  P  K  P  L  H  I  Y  L  T  R  S  K  F  N  K  K  S  S  I  F  L  Q  Q  Q  K  M  V  K  I  N  V  M  I  A  V  V  V  L  V  V  S  V  M  S  I  E  Q  A  T  A  A  R  R  L  Q  Q  F  G  G  F  P  M  P  T  T  P  S  T  G  G  G  F  P  S  F  P  M  P  T  T  P  S  T  G  G  G  F  P  S  F  P  M  P  T  T  P  G  F  P  T  P  S  T  G  G  G  A  F  G  G  L  P  T  F  P  F  P  P  F  P  N  T  P  A  D  A  T  Q  T  T  T  P  *  N  V  T  S  Y  T  R  L  S  T  I  R  I  F  I  I  N  F  *  L  M  Y  F  Y  W  L  N  S  N  C  L  L  K  Q  W  L  L  N  V  C  C  Y  L  C  I  *  A  M  Y  *  L  I  V  V  S  I  L  L  P  S  F  I  I :   D  E  I  I  E  R  K  E   </second_frame>
            <third_frame>   E  L  T  A  N  *  G  E  M  D  F  S  *  Y  S  Q  P  H  R  R  V  N  K  L  N  A  H  Y  V  S  I  P  I  H  T  T  I  *  L  T  Q  N  P  C  T  Y  T  *  Q  E  A  N  S  T  K  R  V  V  F  F  Y  N  N  K  K  W  *  R  *  M  S  *  *  P  L  W  C  L  L  Y  Q  *  C  Q  L  S  K  P  Q  Q  L  D  V  F  S  N  L  V  V  S  L  C  L  L  L  H  P  L  V  V  V  S  P  H  F  L  C  L  R  L  H  Q  L  V  V  V  S  P  H  F  L  C  L  R  L  Q  V  F  L  L  H  Q  L  V  A  A  P  L  V  V  C  L  L  F  H  F  P  H  S  P  T  L  Q  L  M  P  H  K  P  L  L  L  E  M  *  L  H  T  H  D  S  Q  L  S  V  S  L  *  L  T  S  N  *  C  I  S  I  G  *  I  Q  I  A  Y  *  S  N  G  C  L  M  F  V  A  I  Y  V  S  K  L  C  T  D  *  S  L  F  Q  Y  Y  Y  L  H  L  S   : *  M  K  *  *  K  E  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53410" stop="52949"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGEQIECSLCFYSHTYYYITYPKPLHIYLTRSKFNKKSSIFLQQQKMVKINVMIAVVVLVVSVMSIEQATAARRLQQFGGFPMPTTPSTGGGFPSFPMPTTPSTGGGFPSFPMPTTPGFPTPSTGGGAFGGLPTFPFPPFPNTPADATQTTTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53468" e_stop="52784"/>
            <exon e_start="52701" e_stop="52680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.556" e_score="0.988"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="53468" e_stop="52784" e_length="685"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.556">
            <gDNA_intron_boundary i_start="52783" i_stop="52702" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.727">
            <gDNA_exon_boundary e_start="52701" e_stop="52680" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53468" stop="52799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53314" stop="52800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53313" stop="52784"/>
              <exon start="52701" stop="52682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53312" stop="52796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53312" stop="52796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53309" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53308" stop="52800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53305" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53305" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53305" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53305" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53293" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53288" stop="52840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53048" stop="52784"/>
              <exon start="52701" stop="52680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52983" stop="52784"/>
              <exon start="52701" stop="52680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215732" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAATTGACAGCTAATTAAGGAGAGATGGATTTCAGTTGATACTCTCAACCACATAGGAGGGTGAACAAATTGAATGCTCATTATGTTTCTATTCCCATACATACTACTATATAACTTACCCAAAACCCCTGCACATATACTTAACAAGAAGCAAATTCAACAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATCGTTGTTTCA : AGATGAAATAATAGAAAGAAAA</gDNA_template>
            <first_frame> L  N  *  Q  L  I  K  E  R  W  I  S  V  D  T  L  N  H  I  G  G  *  T  N  *  M  L  I  M  F  L  F  P  Y  I  L  L  Y  N  L  P  K  T  P  A  H  I  L  N  K  K  Q  I  Q  Q  K  E  *  Y  F  F  T  T  T  K  N  G  E  D  K  C  H  D  S  R  C  G  A  C  C  I  S  N  V  N  *  A  S  H  S  S  S  T  S  S  A  I  W  W  F  P  Y  A  Y  Y  S  I  H  W  W  W  F  P  L  I  S  Y  A  Y  D  S  I  N  W  W  W  F  P  L  I  S  Y  A  Y  D  S  R  F  S  Y  S  I  N  W  W  R  R  L  W  W  S  A  Y  F  S  I  S  P  I  P  Q  H  S  S  *  C  H  T  N  H  Y  S  L  K  C  N  F  I  H  T  T  L  N  Y  P  Y  L  Y  N  *  L  L  I  D  V  F  L  L  V  K  F  K  L  L  T  E  A  M  V  A  *  C  L  L  L  F  M  Y  L  S  Y  V  L  I  N  R  C  F   : K  M  K  *  *  K  E   </first_frame>
            <second_frame>  *  I  D  S  *  L  R  R  D  G  F  Q  L  I  L  S  T  T  *  E  G  E  Q  I  E  C  S  L  C  F  Y  S  H  T  Y  Y  Y  I  T  Y  P  K  P  L  H  I  Y  L  T  R  S  K  F  N  K  K  S  S  I  F  L  Q  Q  Q  K  M  V  K  I  N  V  M  I  A  V  V  V  L  V  V  S  V  M  S  I  E  Q  A  T  A  A  R  R  L  Q  Q  F  G  G  F  P  M  P  T  T  P  S  T  G  G  G  F  P  S  F  P  M  P  T  T  P  S  T  G  G  G  F  P  S  F  P  M  P  T  T  P  G  F  P  T  P  S  T  G  G  G  A  F  G  G  L  P  T  F  P  F  P  P  F  P  N  T  P  A  D  A  T  Q  T  T  T  P  *  N  V  T  S  Y  T  R  L  S  T  I  R  I  F  I  I  N  F  *  L  M  Y  F  Y  W  L  N  S  N  C  L  L  K  Q  W  L  L  N  V  C  C  Y  L  C  I  *  A  M  Y  *  L  I  V  V  S  :  R  *  N  N  R  K  K  </second_frame>
            <third_frame>   E  L  T  A  N  *  G  E  M  D  F  S  *  Y  S  Q  P  H  R  R  V  N  K  L  N  A  H  Y  V  S  I  P  I  H  T  T  I  *  L  T  Q  N  P  C  T  Y  T  *  Q  E  A  N  S  T  K  R  V  V  F  F  Y  N  N  K  K  W  *  R  *  M  S  *  *  P  L  W  C  L  L  Y  Q  *  C  Q  L  S  K  P  Q  Q  L  D  V  F  S  N  L  V  V  S  L  C  L  L  L  H  P  L  V  V  V  S  P  H  F  L  C  L  R  L  H  Q  L  V  V  V  S  P  H  F  L  C  L  R  L  Q  V  F  L  L  H  Q  L  V  A  A  P  L  V  V  C  L  L  F  H  F  P  H  S  P  T  L  Q  L  M  P  H  K  P  L  L  L  E  M  *  L  H  T  H  D  S  Q  L  S  V  S  L  *  L  T  S  N  *  C  I  S  I  G  *  I  Q  I  A  Y  *  S  N  G  C  L  M  F  V  A  I  Y  V  S  K  L  C  T  D  *  S  L  F  Q :   D  E  I  I  E  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53410" stop="52949"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGEQIECSLCFYSHTYYYITYPKPLHIYLTRSKFNKKSSIFLQQQKMVKINVMIAVVVLVVSVMSIEQATAARRLQQFGGFPMPTTPSTGGGFPSFPMPTTPSTGGGFPSFPMPTTPGFPTPSTGGGAFGGLPTFPFPPFPNTPADATQTTTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="53468" e_stop="52793"/>
            <exon e_start="52701" e_stop="52683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.556" e_score="0.988"/>
          <exon-only e_score="0.737"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="53468" e_stop="52793" e_length="676"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.556">
            <gDNA_intron_boundary i_start="52792" i_stop="52702" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.737">
            <gDNA_exon_boundary e_start="52701" e_stop="52683" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53468" stop="52799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53314" stop="52800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53312" stop="52796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53312" stop="52796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53309" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53308" stop="52800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53305" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53305" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53305" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53305" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53293" stop="52837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53288" stop="52840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53006" stop="52793"/>
              <exon start="52701" stop="52683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAATTGACAGCTAATTAAGGAGAGATGGATTTCAGTTGATACTCTCAACCACATAGGAGGGTGAACAAATTGAATGCTCATTATGTTTCTATTCCCATACATACTACTATATAACTTACCCAAAACCCCTGCACATATACTTAACAAGAAGCAAATTCAACAAAAAGAGTAGTATTTTTTTACAACAACAAAAAATGGTGAAGATAAATGTCATGATAGCCGTTGTGGTGCTTGTTGTATCAGTAATGTCAATTGAGCAAGCCACAGCAGCTCGACGTCTTCAGCAATTTGGTGGTTTCCCTATGCCTACTACTCCATCCACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCATCAACTGGTGGTGGTTTCCCCTCATTTCCTATGCCTACGACTCCAGGTTTTCCTACTCCATCAACTGGTGGCGGCGCCTTTGGTGGTCTGCCTACTTTTCCATTTCCCCCATTCCCCAACACTCCAGCTGATGCCACACAAACCACTACTCCTTGAAATGTAACTTCATACACACGACTCTCAACTATCCGTATCTTTATAATTAACTTCTAATTGATGTATTTCTATTGGTTAAATTCAAATTGCTTACTGAAGCAATGGTTGCTTAATGTTTGTTGCTATTTATGTATCTAAGCTATGTACTGATTAATC : AGATGAAATAATAGAAAGA</gDNA_template>
            <first_frame> L  N  *  Q  L  I  K  E  R  W  I  S  V  D  T  L  N  H  I  G  G  *  T  N  *  M  L  I  M  F  L  F  P  Y  I  L  L  Y  N  L  P  K  T  P  A  H  I  L  N  K  K  Q  I  Q  Q  K  E  *  Y  F  F  T  T  T  K  N  G  E  D  K  C  H  D  S  R  C  G  A  C  C  I  S  N  V  N  *  A  S  H  S  S  S  T  S  S  A  I  W  W  F  P  Y  A  Y  Y  S  I  H  W  W  W  F  P  L  I  S  Y  A  Y  D  S  I  N  W  W  W  F  P  L  I  S  Y  A  Y  D  S  R  F  S  Y  S  I  N  W  W  R  R  L  W  W  S  A  Y  F  S  I  S  P  I  P  Q  H  S  S  *  C  H  T  N  H  Y  S  L  K  C  N  F  I  H  T  T  L  N  Y  P  Y  L  Y  N  *  L  L  I  D  V  F  L  L  V  K  F  K  L  L  T  E  A  M  V  A  *  C  L  L  L  F  M  Y  L  S  Y  V  L  I  N   : Q  M  K  *  *  K   </first_frame>
            <second_frame>  *  I  D  S  *  L  R  R  D  G  F  Q  L  I  L  S  T  T  *  E  G  E  Q  I  E  C  S  L  C  F  Y  S  H  T  Y  Y  Y  I  T  Y  P  K  P  L  H  I  Y  L  T  R  S  K  F  N  K  K  S  S  I  F  L  Q  Q  Q  K  M  V  K  I  N  V  M  I  A  V  V  V  L  V  V  S  V  M  S  I  E  Q  A  T  A  A  R  R  L  Q  Q  F  G  G  F  P  M  P  T  T  P  S  T  G  G  G  F  P  S  F  P  M  P  T  T  P  S  T  G  G  G  F  P  S  F  P  M  P  T  T  P  G  F  P  T  P  S  T  G  G  G  A  F  G  G  L  P  T  F  P  F  P  P  F  P  N  T  P  A  D  A  T  Q  T  T  T  P  *  N  V  T  S  Y  T  R  L  S  T  I  R  I  F  I  I  N  F  *  L  M  Y  F  Y  W  L  N  S  N  C  L  L  K  Q  W  L  L  N  V  C  C  Y  L  C  I  *  A  M  Y  *  L  I  :  R  *  N  N  R  K  </second_frame>
            <third_frame>   E  L  T  A  N  *  G  E  M  D  F  S  *  Y  S  Q  P  H  R  R  V  N  K  L  N  A  H  Y  V  S  I  P  I  H  T  T  I  *  L  T  Q  N  P  C  T  Y  T  *  Q  E  A  N  S  T  K  R  V  V  F  F  Y  N  N  K  K  W  *  R  *  M  S  *  *  P  L  W  C  L  L  Y  Q  *  C  Q  L  S  K  P  Q  Q  L  D  V  F  S  N  L  V  V  S  L  C  L  L  L  H  P  L  V  V  V  S  P  H  F  L  C  L  R  L  H  Q  L  V  V  V  S  P  H  F  L  C  L  R  L  Q  V  F  L  L  H  Q  L  V  A  A  P  L  V  V  C  L  L  F  H  F  P  H  S  P  T  L  Q  L  M  P  H  K  P  L  L  L  E  M  *  L  H  T  H  D  S  Q  L  S  V  S  L  *  L  T  S  N  *  C  I  S  I  G  *  I  Q  I  A  Y  *  S  N  G  C  L  M  F  V  A  I  Y  V  S  K  L  C  T  D  *  S :   D  E  I  I  E  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53410" stop="52949"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGEQIECSLCFYSHTYYYITYPKPLHIYLTRSKFNKKSSIFLQQQKMVKINVMIAVVVLVVSVMSIEQATAARRLQQFGGFPMPTTPSTGGGFPSFPMPTTPSTGGGFPSFPMPTTPGFPTPSTGGGAFGGLPTFPFPPFPNTPADATQTTTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="82120" PGL_stop="81796"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82120" e_stop="81796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="82120" e_stop="81796" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82120" stop="81796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82120" stop="81814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATATACATTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTTCTGTGTATAAAGCGAGAAAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  L  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  T  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  F  C  V  *  S  E  K  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  F  V  V  *  S  *  K  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  I  H  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  N  Y  T  L  S  V  Y  K  A  R  K </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  Y  I  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  I  I  H  F  L  C  I  K  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0037D10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="83137" PGL_stop="82811"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83137" e_stop="82811"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="83137" e_stop="82811" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83137" stop="82811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83137" stop="82811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83136" stop="82811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308639" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAACTATGCCAAAGCCTGAAATTCCAGAACTTCCTAAACCAACTCTTCCTTCACTTTCTCCACCATACAAACCCGCTACTCCTTGAGTAAATTATATGCTACTTTCACTCTAGTAGGAGGTACCCGACTGATATTTTGCGATTTCCATCTGAATCTATGAAGCTTGCGACCTGAGCTGTGACATGGAGATAGTATTGGATACTTTCTGCTAGGAGTAGAAATTTTAATTCTTTTATAATAGTATTTGAATTGGATGTACCATGTTTGATATGTCATTATGAGTATTTTATTACTTTCTATATATACAGTATGTGTAACAGAGCTCT</gDNA_template>
            <first_frame> P  T  M  P  K  P  E  I  P  E  L  P  K  P  T  L  P  S  L  S  P  P  Y  K  P  A  T  P  *  V  N  Y  M  L  L  S  L  *  *  E  V  P  D  *  Y  F  A  I  S  I  *  I  Y  E  A  C  D  L  S  C  D  M  E  I  V  L  D  T  F  C  *  E  *  K  F  *  F  F  Y  N  S  I  *  I  G  C  T  M  F  D  M  S  L  *  V  F  Y  Y  F  L  Y  I  Q  Y  V  *  Q  S  S </first_frame>
            <second_frame>  Q  L  C  Q  S  L  K  F  Q  N  F  L  N  Q  L  F  L  H  F  L  H  H  T  N  P  L  L  L  E  *  I  I  C  Y  F  H  S  S  R  R  Y  P  T  D  I  L  R  F  P  S  E  S  M  K  L  A  T  *  A  V  T  W  R  *  Y  W  I  L  S  A  R  S  R  N  F  N  S  F  I  I  V  F  E  L  D  V  P  C  L  I  C  H  Y  E  Y  F  I  T  F  Y  I  Y  S  M  C  N  R  A   </second_frame>
            <third_frame>   N  Y  A  K  A  *  N  S  R  T  S  *  T  N  S  S  F  T  F  S  T  I  Q  T  R  Y  S  L  S  K  L  Y  A  T  F  T  L  V  G  G  T  R  L  I  F  C  D  F  H  L  N  L  *  S  L  R  P  E  L  *  H  G  D  S  I  G  Y  F  L  L  G  V  E  I  L  I  L  L  *  *  Y  L  N  W  M  Y  H  V  *  Y  V  I  M  S  I  L  L  L  S  I  Y  T  V  C  V  T  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0037D10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="83989" PGL_stop="83610"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83989" e_stop="83610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="83989" e_stop="83610" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83989" stop="83610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAAGATGCCTGAGATCCCTACCATGCCAAAATCTGAGCTTCCTAGTATGCCAAAACTAGAGATTCCTCCCTTGAAAAAGTCAGAAATCCCCGCAGTGCCCAAGACTGAGGTTCCTCCTGTTATGAAAAAGCCTGAAGTTCCAACTCTACCAAAGCCCGAGCTACCAAGTCTGCCAAAGCCAGAAATCCCAGAACTACCAAAGCCAAAAGTCCCAGAGCTTCCAAAGCTAAAAATCCCAACAATGCCAAAGCCTGAAGTACCTACTATGCCAAAGCATGAAATCCCAAAACCAAAAGTCCAAGAGCTTCCAAAGCCTGAAATACCAACTACGCCAAAGCCCGAAATACCAGAACTACCAAAGACAAAAGTTCCAGAACT</gDNA_template>
            <first_frame> P  K  M  P  E  I  P  T  M  P  K  S  E  L  P  S  M  P  K  L  E  I  P  P  L  K  K  S  E  I  P  A  V  P  K  T  E  V  P  P  V  M  K  K  P  E  V  P  T  L  P  K  P  E  L  P  S  L  P  K  P  E  I  P  E  L  P  K  P  K  V  P  E  L  P  K  L  K  I  P  T  M  P  K  P  E  V  P  T  M  P  K  H  E  I  P  K  P  K  V  Q  E  L  P  K  P  E  I  P  T  T  P  K  P  E  I  P  E  L  P  K  T  K  V  P  E   </first_frame>
            <second_frame>  L  R  C  L  R  S  L  P  C  Q  N  L  S  F  L  V  C  Q  N  *  R  F  L  P  *  K  S  Q  K  S  P  Q  C  P  R  L  R  F  L  L  L  *  K  S  L  K  F  Q  L  Y  Q  S  P  S  Y  Q  V  C  Q  S  Q  K  S  Q  N  Y  Q  S  Q  K  S  Q  S  F  Q  S  *  K  S  Q  Q  C  Q  S  L  K  Y  L  L  C  Q  S  M  K  S  Q  N  Q  K  S  K  S  F  Q  S  L  K  Y  Q  L  R  Q  S  P  K  Y  Q  N  Y  Q  R  Q  K  F  Q  N  </second_frame>
            <third_frame>   *  D  A  *  D  P  Y  H  A  K  I  *  A  S  *  Y  A  K  T  R  D  S  S  L  E  K  V  R  N  P  R  S  A  Q  D  *  G  S  S  C  Y  E  K  A  *  S  S  N  S  T  K  A  R  A  T  K  S  A  K  A  R  N  P  R  T  T  K  A  K  S  P  R  A  S  K  A  K  N  P  N  N  A  K  A  *  S  T  Y  Y  A  K  A  *  N  P  K  T  K  S  P  R  A  S  K  A  *  N  T  N  Y  A  K  A  R  N  T  R  T  T  K  D  K  S  S  R  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83989" stop="83612"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKMPEIPTMPKSELPSMPKLEIPPLKKSEIPAVPKTEVPPVMKKPEVPTLPKPELPSLPKPEIPELPKPKVPELPKLKIPTMPKPEVPTMPKHEIPKPKVQELPKPEIPTTPKPEIPELPKTKVPE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="83687" PGL_stop="85349"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83687" e_stop="83718"/>
            <exon e_start="84627" e_stop="85349"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.531"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.531">
            <gDNA_exon_boundary e_start="83687" e_stop="83718" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83719" i_stop="84626" i_length="908"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84627" e_stop="85349" e_length="723"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83687" stop="83718"/>
              <exon start="84627" stop="85349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541622" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGACTTTTGGTTTTGGGATTTCATGCTTTG : TGACCCTTCAACTTTCAAGTCTACTGAATCTAAAACAGAAAATTGTCTGAGTTTACAGATCATAAACTAACTTGGAACACATAATTCTCTGCTATCCTATTCTACATAGTACATAATAATGGTGGAGCACTGCAAGTGAAACATGTTGAACAGTATTATACAATCCTCCAAGAAATGAAATGAAGTCAATAGCTGAAAAAAAATATCATATAAAAGAACTGTTGATGATATAATCAAATAGATAAGTGTTTAATGCCTCCGTCCATTGCCTTAAAGTTTTGTGTTGGAGACATATTCACTCATATGGTGTCCATATTCAAATTTTCGGTAAATCAGTCTTCACAACTGTTTTTCTCTATCTACTCTACGCTTAGGACAAATATCCTTCTACGGACCATCATCACGCCATGCCACACTAGGCTTCTCTCTTCCTTCACTCTGCTTCATATCCACTCTTCAGCCTTCATGGAAAAAAGAAAGTACAAATAGCAGCAAAAAATAAAATACAAATCAGTCAACTGGTAAACCATATAACCAGGCTACATACGCAGGATTGTGTTAAATATACTCGTCACTCGTTGTATGTGTAAGGATTTACAGAAATGTTTATAATGTCCTAGACCACTCCACCCATCAGCTTAAACTTTTTGGTCGAATACTCATATTCTTTCTGAACTAGTATCCTCATGTGCCTATTCCATGCAGTCATTTCAACTACCAAAC</gDNA_template>
            <first_frame> L  D  F  W  F  W  D  F  M  L  C :   D  P  S  T  F  K  S  T  E  S  K  T  E  N  C  L  S  L  Q  I  I  N  *  L  G  T  H  N  S  L  L  S  Y  S  T  *  Y  I  I  M  V  E  H  C  K  *  N  M  L  N  S  I  I  Q  S  S  K  K  *  N  E  V  N  S  *  K  K  I  S  Y  K  R  T  V  D  D  I  I  K  *  I  S  V  *  C  L  R  P  L  P  *  S  F  V  L  E  T  Y  S  L  I  W  C  P  Y  S  N  F  R  *  I  S  L  H  N  C  F  S  L  S  T  L  R  L  G  Q  I  S  F  Y  G  P  S  S  R  H  A  T  L  G  F  S  L  P  S  L  C  F  I  S  T  L  Q  P  S  W  K  K  E  S  T  N  S  S  K  K  *  N  T  N  Q  S  T  G  K  P  Y  N  Q  A  T  Y  A  G  L  C  *  I  Y  S  S  L  V  V  C  V  R  I  Y  R  N  V  Y  N  V  L  D  H  S  T  H  Q  L  K  L  F  G  R  I  L  I  F  F  L  N  *  Y  P  H  V  P  I  P  C  S  H  F  N  Y  Q   </first_frame>
            <second_frame>  W  T  F  G  F  G  I  S  C  F   : V  T  L  Q  L  S  S  L  L  N  L  K  Q  K  I  V  *  V  Y  R  S  *  T  N  L  E  H  I  I  L  C  Y  P  I  L  H  S  T  *  *  W  W  S  T  A  S  E  T  C  *  T  V  L  Y  N  P  P  R  N  E  M  K  S  I  A  E  K  K  Y  H  I  K  E  L  L  M  I  *  S  N  R  *  V  F  N  A  S  V  H  C  L  K  V  L  C  W  R  H  I  H  S  Y  G  V  H  I  Q  I  F  G  K  S  V  F  T  T  V  F  L  Y  L  L  Y  A  *  D  K  Y  P  S  T  D  H  H  H  A  M  P  H  *  A  S  L  F  L  H  S  A  S  Y  P  L  F  S  L  H  G  K  K  K  V  Q  I  A  A  K  N  K  I  Q  I  S  Q  L  V  N  H  I  T  R  L  H  T  Q  D  C  V  K  Y  T  R  H  S  L  Y  V  *  G  F  T  E  M  F  I  M  S  *  T  T  P  P  I  S  L  N  F  L  V  E  Y  S  Y  S  F  *  T  S  I  L  M  C  L  F  H  A  V  I  S  T  T  K  </second_frame>
            <third_frame>   G  L  L  V  L  G  F  H  A  L  :  *  P  F  N  F  Q  V  Y  *  I  *  N  R  K  L  S  E  F  T  D  H  K  L  T  W  N  T  *  F  S  A  I  L  F  Y  I  V  H  N  N  G  G  A  L  Q  V  K  H  V  E  Q  Y  Y  T  I  L  Q  E  M  K  *  S  Q  *  L  K  K  N  I  I  *  K  N  C  *  *  Y  N  Q  I  D  K  C  L  M  P  P  S  I  A  L  K  F  C  V  G  D  I  F  T  H  M  V  S  I  F  K  F  S  V  N  Q  S  S  Q  L  F  F  S  I  Y  S  T  L  R  T  N  I  L  L  R  T  I  I  T  P  C  H  T  R  L  L  S  S  F  T  L  L  H  I  H  S  S  A  F  M  E  K  R  K  Y  K  *  Q  Q  K  I  K  Y  K  S  V  N  W  *  T  I  *  P  G  Y  I  R  R  I  V  L  N  I  L  V  T  R  C  M  C  K  D  L  Q  K  C  L  *  C  P  R  P  L  H  P  S  A  *  T  F  W  S  N  T  H  I  L  S  E  L  V  S  S  C  A  Y  S  M  Q  S  F  Q  L  P  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84855" stop="85115"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNQIDKCLMPPSIALKFCVGDIFTHMVSIFKFSVNQSSQLFFSIYSTLRTNILLRTIITPCHTRLLSSFTLLHIHSSAFMEKRKYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="86092" PGL_stop="85578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86092" e_stop="85578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86092" e_stop="85578" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86092" stop="85578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86092" stop="85598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86092" stop="85719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240083" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGGAGCTGTGTAGGCATTTATGACTTAATGAGCATGGTAGATGATGCAATTTGAAGGTTGGCTAGATCTTTCTTCTATTTATGTGTTTGCAAGTGACGTCCCCACAATGATTGTGTGCTAAGTCAGATATAAACTCAGTTTTGTTCTGATAAGTTCTTATATTACTTCCAACTTGGTTCAGTTGGAGTTGGTGTAATGGGAAAGTCTAAAGTTACTAAAGTTGCTGTTTCCAGCCTCAATTTTAGCCTGCGATACAACCTCTATGAGAAGTTATAATCTGCTTATCATTCCATTTATGTTGCAGTGATACGGAATCCACTTTTTCTTTTTTTAATAACAAATAAATTCCGGAGGGTCGGTTTAAACTGAATGCACACAAGGAATAACCACCAAAATCTCAGGTGGAGATAAAAGCAGTTCTTTTCCATTAGGACCATAAAATTCCCAGGGATGTTTATGTACTTTGATTGGTTAAAACTTCAAAATGATATGGCTGCCGTTCTTTCATATGTT</gDNA_template>
            <first_frame> A  G  A  V  *  A  F  M  T  *  *  A  W  *  M  M  Q  F  E  G  W  L  D  L  S  S  I  Y  V  F  A  S  D  V  P  T  M  I  V  C  *  V  R  Y  K  L  S  F  V  L  I  S  S  Y  I  T  S  N  L  V  Q  L  E  L  V  *  W  E  S  L  K  L  L  K  L  L  F  P  A  S  I  L  A  C  D  T  T  S  M  R  S  Y  N  L  L  I  I  P  F  M  L  Q  *  Y  G  I  H  F  F  F  F  *  *  Q  I  N  S  G  G  S  V  *  T  E  C  T  Q  G  I  T  T  K  I  S  G  G  D  K  S  S  S  F  P  L  G  P  *  N  S  Q  G  C  L  C  T  L  I  G  *  N  F  K  M  I  W  L  P  F  F  H  M   </first_frame>
            <second_frame>  Q  E  L  C  R  H  L  *  L  N  E  H  G  R  *  C  N  L  K  V  G  *  I  F  L  L  F  M  C  L  Q  V  T  S  P  Q  *  L  C  A  K  S  D  I  N  S  V  L  F  *  *  V  L  I  L  L  P  T  W  F  S  W  S  W  C  N  G  K  V  *  S  Y  *  S  C  C  F  Q  P  Q  F  *  P  A  I  Q  P  L  *  E  V  I  I  C  L  S  F  H  L  C  C  S  D  T  E  S  T  F  S  F  F  N  N  K  *  I  P  E  G  R  F  K  L  N  A  H  K  E  *  P  P  K  S  Q  V  E  I  K  A  V  L  F  H  *  D  H  K  I  P  R  D  V  Y  V  L  *  L  V  K  T  S  K  *  Y  G  C  R  S  F  I  C  </second_frame>
            <third_frame>   R  S  C  V  G  I  Y  D  L  M  S  M  V  D  D  A  I  *  R  L  A  R  S  F  F  Y  L  C  V  C  K  *  R  P  H  N  D  C  V  L  S  Q  I  *  T  Q  F  C  S  D  K  F  L  Y  Y  F  Q  L  G  S  V  G  V  G  V  M  G  K  S  K  V  T  K  V  A  V  S  S  L  N  F  S  L  R  Y  N  L  Y  E  K  L  *  S  A  Y  H  S  I  Y  V  A  V  I  R  N  P  L  F  L  F  L  I  T  N  K  F  R  R  V  G  L  N  *  M  H  T  R  N  N  H  Q  N  L  R  W  R  *  K  Q  F  F  S  I  R  T  I  K  F  P  G  M  F  M  Y  F  D  W  L  K  L  Q  N  D  M  A  A  V  L  S  Y  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0037D10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="90415" PGL_stop="89617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90415" e_stop="89617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="90415" e_stop="89617" e_length="799"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90415" stop="89935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90324" stop="89617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90073" stop="89627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340034" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTTCCTTGGAGATCTTTAAGAAATACAAAGGCAATATTTCGAGCTGGACTCCGTTTGCACCCATGTTTAATAAACATGGAGGTGTAAGAAAGCCATCTGCTCCCAGAGTTTATATTGATGATTATGAGGATGTGTTTCTGGGATTATCAGAGTCGAGTGAGGAGTCAGATGAGGATTGGAAGGGTGATAATAAGATGAAGAAGGCAAAGAGTGGGAAACGAAAAAGTAAAAGGTTTAGGAGAAAGAAGGGCAAGATGCAGAAATCTGACAAGGGAAAGAATGTTGTAGGGAATGCTGGTGATGATGTGCAAGATGTTTCAGTGACTCAAGGGGGTGTAGAAGTGCCCAATGTTACAACAGCTCAATCAAGCAAGAGAGCTGGTAATGCCAGAAGGCAAGCTGGAAGGGTTACCAAAGATGTTGGGAAATTGGATTTGAATGTGGAATTCAGTAATGAGGTTGAAGAGCCCCCTGCACCTGGGGTAGGCCAAGGCAATGGAGCTGGAACAGGGGAGGATGGGAACATTGAAGGGATTGAGTTTTTTGAAGGTCTTGATGAATTCCTAAGCAGTCTTCCTATACTCAATGCTGTGGGTGATGATAAGGTTAAGGCTGCCTAGCAAAGTAAGGCATTTCTTTTGTTCTAGTTGTAGCTTCCTTTTGTCTTTTGTATGTTTTAGTAAGGGATGAAAAGCTACTCAGGCATTGGCCTTGATGTTTTCATTGTAATGCTAATGTATTGCTAGTTTGCATTGAAGTAATTGCAATAATCAGCTTTTAGCTCTAATCTCCATAC</gDNA_template>
            <first_frame> D  F  P  W  R  S  L  R  N  T  K  A  I  F  R  A  G  L  R  L  H  P  C  L  I  N  M  E  V  *  E  S  H  L  L  P  E  F  I  L  M  I  M  R  M  C  F  W  D  Y  Q  S  R  V  R  S  Q  M  R  I  G  R  V  I  I  R  *  R  R  Q  R  V  G  N  E  K  V  K  G  L  G  E  R  R  A  R  C  R  N  L  T  R  E  R  M  L  *  G  M  L  V  M  M  C  K  M  F  Q  *  L  K  G  V  *  K  C  P  M  L  Q  Q  L  N  Q  A  R  E  L  V  M  P  E  G  K  L  E  G  L  P  K  M  L  G  N  W  I  *  M  W  N  S  V  M  R  L  K  S  P  L  H  L  G  *  A  K  A  M  E  L  E  Q  G  R  M  G  T  L  K  G  L  S  F  L  K  V  L  M  N  S  *  A  V  F  L  Y  S  M  L  W  V  M  I  R  L  R  L  P  S  K  V  R  H  F  F  C  S  S  C  S  F  L  L  S  F  V  C  F  S  K  G  *  K  A  T  Q  A  L  A  L  M  F  S  L  *  C  *  C  I  A  S  L  H  *  S  N  C  N  N  Q  L  L  A  L  I  S  I  </first_frame>
            <second_frame>  I  F  L  G  D  L  *  E  I  Q  R  Q  Y  F  E  L  D  S  V  C  T  H  V  *  *  T  W  R  C  K  K  A  I  C  S  Q  S  L  Y  *  *  L  *  G  C  V  S  G  I  I  R  V  E  *  G  V  R  *  G  L  E  G  *  *  *  D  E  E  G  K  E  W  E  T  K  K  *  K  V  *  E  K  E  G  Q  D  A  E  I  *  Q  G  K  E  C  C  R  E  C  W  *  *  C  A  R  C  F  S  D  S  R  G  C  R  S  A  Q  C  Y  N  S  S  I  K  Q  E  S  W  *  C  Q  K  A  S  W  K  G  Y  Q  R  C  W  E  I  G  F  E  C  G  I  Q  *  *  G  *  R  A  P  C  T  W  G  R  P  R  Q  W  S  W  N  R  G  G  W  E  H  *  R  D  *  V  F  *  R  S  *  *  I  P  K  Q  S  S  Y  T  Q  C  C  G  *  *  *  G  *  G  C  L  A  K  *  G  I  S  F  V  L  V  V  A  S  F  C  L  L  Y  V  L  V  R  D  E  K  L  L  R  H  W  P  *  C  F  H  C  N  A  N  V  L  L  V  C  I  E  V  I  A  I  I  S  F  *  L  *  S  P  Y </second_frame>
            <third_frame>   F  S  L  E  I  F  K  K  Y  K  G  N  I  S  S  W  T  P  F  A  P  M  F  N  K  H  G  G  V  R  K  P  S  A  P  R  V  Y  I  D  D  Y  E  D  V  F  L  G  L  S  E  S  S  E  E  S  D  E  D  W  K  G  D  N  K  M  K  K  A  K  S  G  K  R  K  S  K  R  F  R  R  K  K  G  K  M  Q  K  S  D  K  G  K  N  V  V  G  N  A  G  D  D  V  Q  D  V  S  V  T  Q  G  G  V  E  V  P  N  V  T  T  A  Q  S  S  K  R  A  G  N  A  R  R  Q  A  G  R  V  T  K  D  V  G  K  L  D  L  N  V  E  F  S  N  E  V  E  E  P  P  A  P  G  V  G  Q  G  N  G  A  G  T  G  E  D  G  N  I  E  G  I  E  F  F  E  G  L  D  E  F  L  S  S  L  P  I  L  N  A  V  G  D  D  K  V  K  A  A  *  Q  S  K  A  F  L  L  F  *  L  *  L  P  F  V  F  C  M  F  *  *  G  M  K  S  Y  S  G  I  G  L  D  V  F  I  V  M  L  M  Y  C  *  F  A  L  K  *  L  Q  *  S  A  F  S  S  N  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90413" stop="89793"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLEIFKKYKGNISSWTPFAPMFNKHGGVRKPSAPRVYIDDYEDVFLGLSESSEESDEDWKGDNKMKKAKSGKRKSKRFRRKKGKMQKSDKGKNVVGNAGDDVQDVSVTQGGVEVPNVTTAQSSKRAGNARRQAGRVTKDVGKLDLNVEFSNEVEEPPAPGVGQGNGAGTGEDGNIEGIEFFEGLDEFLSSLPILNAVGDDKVKAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="92170" PGL_stop="91348"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92170" e_stop="91348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="92170" e_stop="91348" e_length="823"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92170" stop="91348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTACACTTAATTTCTCTCTCTTTTCTTTCTTCTTCACTTCAATTTCTTTCTTTTCTTGGAACTGAAGTTGAAAAACTCAAAAATGGAACATCCATTCTTCATGAACGGCGCTGGAAATACGTCGAGAGCGGAGGCGATACGGTGGTTATCAATTGCCGAGAAGCTATTGACTAACCGTGACCTAGTTGGAAGCAAATCGTTTGCGACCCGTGCCCATGAATCCGACCCGACCCTTTTACCTGCCGACCAAATTCTTGCAATCGTTGACACCCTAATCGCCGGCGACAAGCGGATCAACAACCAGCATCTTGATTATTACTCTATTCTTCAAATTCCTTCCAACCAAACTCATGATTCTGAACTTATCGCTAATCAGTACCGACGTCTTGCGCTCCTATTGAACCCTCAGAAGAACAATTTCCCTTTCTCTGACCATGCTTTTCATCTTGTGGTTGATGCTTGGTCTGTTCTTTCAAACGCTTTTAGGAGAAGTGTTTATGATAAAGAAATTGGGTTTTTTCTTAACCTTAACCCTGTATCGTCTCCTCCACCTCCGACTAATAACCCAGTTGGTTTCATGCAGCAAAGTTCTATGATTTTTCAGAGTCAACCACAGTCGCATCCAGTGAGTTCTGTTCCGAGTTCTTCAAGCAGAGAGCGGCAGACTGTAACATTTCTTCAAGACCCACAACCCCAGCCAATGACTTCTGTGACTAGCTTGACTAGAGAGCAGCAACCTGTAACATTTCTGAGCAGAAATCAAACACAGCCAGTAAGCTCTACTATGCTAAGCCCGGACAGAGAACAACACCCGTTTACCTT</gDNA_template>
            <first_frame> A  T  L  N  F  S  L  F  S  F  F  F  T  S  I  S  F  F  S  W  N  *  S  *  K  T  Q  K  W  N  I  H  S  S  *  T  A  L  E  I  R  R  E  R  R  R  Y  G  G  Y  Q  L  P  R  S  Y  *  L  T  V  T  *  L  E  A  N  R  L  R  P  V  P  M  N  P  T  R  P  F  Y  L  P  T  K  F  L  Q  S  L  T  P  *  S  P  A  T  S  G  S  T  T  S  I  L  I  I  T  L  F  F  K  F  L  P  T  K  L  M  I  L  N  L  S  L  I  S  T  D  V  L  R  S  Y  *  T  L  R  R  T  I  S  L  S  L  T  M  L  F  I  L  W  L  M  L  G  L  F  F  Q  T  L  L  G  E  V  F  M  I  K  K  L  G  F  F  L  T  L  T  L  Y  R  L  L  H  L  R  L  I  T  Q  L  V  S  C  S  K  V  L  *  F  F  R  V  N  H  S  R  I  Q  *  V  L  F  R  V  L  Q  A  E  S  G  R  L  *  H  F  F  K  T  H  N  P  S  Q  *  L  L  *  L  A  *  L  E  S  S  N  L  *  H  F  *  A  E  I  K  H  S  Q  *  A  L  L  C  *  A  R  T  E  N  N  T  R  L  P  </first_frame>
            <second_frame>  L  H  L  I  S  L  S  F  L  S  S  S  L  Q  F  L  S  F  L  G  T  E  V  E  K  L  K  N  G  T  S  I  L  H  E  R  R  W  K  Y  V  E  S  G  G  D  T  V  V  I  N  C  R  E  A  I  D  *  P  *  P  S  W  K  Q  I  V  C  D  P  C  P  *  I  R  P  D  P  F  T  C  R  P  N  S  C  N  R  *  H  P  N  R  R  R  Q  A  D  Q  Q  P  A  S  *  L  L  L  Y  S  S  N  S  F  Q  P  N  S  *  F  *  T  Y  R  *  S  V  P  T  S  C  A  P  I  E  P  S  E  E  Q  F  P  F  L  *  P  C  F  S  S  C  G  *  C  L  V  C  S  F  K  R  F  *  E  K  C  L  *  *  R  N  W  V  F  S  *  P  *  P  C  I  V  S  S  T  S  D  *  *  P  S  W  F  H  A  A  K  F  Y  D  F  S  E  S  T  T  V  A  S  S  E  F  C  S  E  F  F  K  Q  R  A  A  D  C  N  I  S  S  R  P  T  T  P  A  N  D  F  C  D  *  L  D  *  R  A  A  T  C  N  I  S  E  Q  K  S  N  T  A  S  K  L  Y  Y  A  K  P  G  Q  R  T  T  P  V  Y  L </second_frame>
            <third_frame>   Y  T  *  F  L  S  L  F  F  L  L  H  F  N  F  F  L  F  L  E  L  K  L  K  N  S  K  M  E  H  P  F  F  M  N  G  A  G  N  T  S  R  A  E  A  I  R  W  L  S  I  A  E  K  L  L  T  N  R  D  L  V  G  S  K  S  F  A  T  R  A  H  E  S  D  P  T  L  L  P  A  D  Q  I  L  A  I  V  D  T  L  I  A  G  D  K  R  I  N  N  Q  H  L  D  Y  Y  S  I  L  Q  I  P  S  N  Q  T  H  D  S  E  L  I  A  N  Q  Y  R  R  L  A  L  L  L  N  P  Q  K  N  N  F  P  F  S  D  H  A  F  H  L  V  V  D  A  W  S  V  L  S  N  A  F  R  R  S  V  Y  D  K  E  I  G  F  F  L  N  L  N  P  V  S  S  P  P  P  P  T  N  N  P  V  G  F  M  Q  Q  S  S  M  I  F  Q  S  Q  P  Q  S  H  P  V  S  S  V  P  S  S  S  S  R  E  R  Q  T  V  T  F  L  Q  D  P  Q  P  Q  P  M  T  S  V  T  S  L  T  R  E  Q  Q  P  V  T  F  L  S  R  N  Q  T  Q  P  V  S  S  T  M  L  S  P  D  R  E  Q  H  P  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92159" stop="91350"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSLFFLLHFNFFLFLELKLKNSKMEHPFFMNGAGNTSRAEAIRWLSIAEKLLTNRDLVGSKSFATRAHESDPTLLPADQILAIVDTLIAGDKRINNQHLDYYSILQIPSNQTHDSELIANQYRRLALLLNPQKNNFPFSDHAFHLVVDAWSVLSNAFRRSVYDKEIGFFLNLNPVSSPPPPTNNPVGFMQQSSMIFQSQPQSHPVSSVPSSSSRERQTVTFLQDPQPQPMTSVTSLTREQQPVTFLSRNQTQPVSSTMLSPDREQHPFT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="104016" PGL_stop="111946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104016" e_stop="104057"/>
            <exon e_start="104411" e_stop="104606"/>
            <exon e_start="108432" e_stop="108519"/>
            <exon e_start="109276" e_stop="109337"/>
            <exon e_start="109850" e_stop="109949"/>
            <exon e_start="110565" e_stop="110606"/>
            <exon e_start="111284" e_stop="111331"/>
            <exon e_start="111414" e_stop="111523"/>
            <exon e_start="111610" e_stop="111946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.947" e_score="0.881"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.898" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.985" e_score="0.979"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="0.964"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.881">
            <gDNA_exon_boundary e_start="104016" e_stop="104057" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.947">
            <gDNA_intron_boundary i_start="104058" i_stop="104410" i_length="353"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="104411" e_stop="104606" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="104607" i_stop="108431" i_length="3825"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108432" e_stop="108519" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.898" acc_prob="0.922">
            <gDNA_intron_boundary i_start="108520" i_stop="109275" i_length="756"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109276" e_stop="109337" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.987">
            <gDNA_intron_boundary i_start="109338" i_stop="109849" i_length="512"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="109850" e_stop="109949" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="109950" i_stop="110564" i_length="615"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="110565" e_stop="110606" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.951">
            <gDNA_intron_boundary i_start="110607" i_stop="111283" i_length="677"/>
          </intron>
          <exon e_serial="7" e_score="0.979">
            <gDNA_exon_boundary e_start="111284" e_stop="111331" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.984" acc_prob="0.985">
            <gDNA_intron_boundary i_start="111332" i_stop="111413" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="0.964">
            <gDNA_exon_boundary e_start="111414" e_stop="111523" e_length="110"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="111524" i_stop="111609" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="0.950">
            <gDNA_exon_boundary e_start="111610" e_stop="111946" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104016" stop="104057"/>
              <exon start="104411" stop="104606"/>
              <exon start="108432" stop="108519"/>
              <exon start="109276" stop="109337"/>
              <exon start="109850" stop="109949"/>
              <exon start="110565" stop="110606"/>
              <exon start="111284" stop="111331"/>
              <exon start="111414" stop="111523"/>
              <exon start="111610" stop="111775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104016" stop="104057"/>
              <exon start="104411" stop="104606"/>
              <exon start="108432" stop="108519"/>
              <exon start="109276" stop="109337"/>
              <exon start="109850" stop="109949"/>
              <exon start="110565" stop="110606"/>
              <exon start="111284" stop="111331"/>
              <exon start="111414" stop="111523"/>
              <exon start="111610" stop="111774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104411" stop="104606"/>
              <exon start="108432" stop="108519"/>
              <exon start="109276" stop="109337"/>
              <exon start="109850" stop="109949"/>
              <exon start="110565" stop="110606"/>
              <exon start="111284" stop="111331"/>
              <exon start="111414" stop="111523"/>
              <exon start="111610" stop="111860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104421" stop="104606"/>
              <exon start="108432" stop="108519"/>
              <exon start="109276" stop="109337"/>
              <exon start="109850" stop="109949"/>
              <exon start="110565" stop="110606"/>
              <exon start="111284" stop="111331"/>
              <exon start="111414" stop="111523"/>
              <exon start="111610" stop="111926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104459" stop="104606"/>
              <exon start="108432" stop="108519"/>
              <exon start="109276" stop="109337"/>
              <exon start="109850" stop="109909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109283" stop="109337"/>
              <exon start="109850" stop="109949"/>
              <exon start="110565" stop="110606"/>
              <exon start="111284" stop="111331"/>
              <exon start="111414" stop="111523"/>
              <exon start="111610" stop="111817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109321" stop="109337"/>
              <exon start="109850" stop="109949"/>
              <exon start="110565" stop="110606"/>
              <exon start="111284" stop="111331"/>
              <exon start="111414" stop="111523"/>
              <exon start="111610" stop="111946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109922" stop="109949"/>
              <exon start="110565" stop="110606"/>
              <exon start="111284" stop="111331"/>
              <exon start="111414" stop="111523"/>
              <exon start="111610" stop="111848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110582" stop="110606"/>
              <exon start="111284" stop="111331"/>
              <exon start="111414" stop="111523"/>
              <exon start="111610" stop="111880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693606" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCACAACTTCAGATCTCTTCTCCATTTCTTGCAAATTTCAG : GTTGAAGTAAGGAAATGGTGAGACAAAAAATTCAGATCAAGAAGATAGACAATTTGACAGCAAGACAAGTGACATTTTCAAAGAGAAGAAGAGGGCTTTTCAAAAAAGCTCAAGAGCTTTCAACTCTTTGTGATGCTGATATTGGACTCATTGTTTTCTCTGCTACTGGAAAACTTTTTGAGTATTCAAGCTCCAG : CATGATGCAACTGATTGAGAAGCACAAGATGCAGTCAGAAAGGGATGGTATGGATAATCCAGAACAACTGCATTCTTCTAACATTCTG : AGCGAGAAGAAAACCCATGCAATGCTTAACAGGGACTTTGTGGAGAAGAATCGGGAGTTAAG : GCAACTACATGGAGAAGAGCTGCAAGGACTTGGTTTGGATGAATTAATGAAATTGGAGAAATTAGTCGAGGGAGGAATAAGTCGTGTCCTCAAAATTAAG : GGTGACAAGTTTATGAAAGAGATCAGTTCCCTCAAGAAAAAG : GAAGCTAAACTCCAGGAAGAGAATTCACAGTTGAAAAAGCAATCACAA : GCAAGATTGAATGAAGAAGGGCAAAATGTAATTGAGCAAGGACATTCAGCAGACTCCATCACGAACAATCGCAGCTTAGTCAATGACTCAGATACTAGTCTCAAGTTATG : CTTGGCTTTTCCTTAGTGAGCTCCATCCATATGAAAATGGGAGATAATATAGTTACTCAAACAAGGGCGAGTAATTTTCTAATATTTATTATGGATCATAATATAGTGAAATGTATAAAATTGATTAGATTGGTTGATCAGGCTCCGTTAAAAAAACATTGGGACCATAGAGTTCATTGAGAATCAAAGGGTCAACAGTCTAATCAGAGAGTCATGTGATATTTAGCTAGGTGCTATGTATTAATCTATTTAAAGAATCAACTTAAATATATGTATTTATTAGCAGTAATTTCTTTGATTATTCAAGAAGCACCAAACTTTAATTAGAATTCATATC</gDNA_template>
            <first_frame> L  T  T  S  D  L  F  S  I  S  C  K  F  Q  :  V  E  V  R  K  W  *  D  K  K  F  R  S  R  R  *  T  I  *  Q  Q  D  K  *  H  F  Q  R  E  E  E  G  F  S  K  K  L  K  S  F  Q  L  F  V  M  L  I  L  D  S  L  F  S  L  L  L  E  N  F  L  S  I  Q  A  P   : A  *  C  N  *  L  R  S  T  R  C  S  Q  K  G  M  V  W  I  I  Q  N  N  C  I  L  L  T  F  * :   A  R  R  K  P  M  Q  C  L  T  G  T  L  W  R  R  I  G  S  *   : G  N  Y  M  E  K  S  C  K  D  L  V  W  M  N  *  *  N  W  R  N  *  S  R  E  E  *  V  V  S  S  K  L  R :   V  T  S  L  *  K  R  S  V  P  S  R  K  R :   K  L  N  S  R  K  R  I  H  S  *  K  S  N  H  K :   Q  D  *  M  K  K  G  K  M  *  L  S  K  D  I  Q  Q  T  P  S  R  T  I  A  A  *  S  M  T  Q  I  L  V  S  S  Y   : A  W  L  F  L  S  E  L  H  P  Y  E  N  G  R  *  Y  S  Y  S  N  K  G  E  *  F  S  N  I  Y  Y  G  S  *  Y  S  E  M  Y  K  I  D  *  I  G  *  S  G  S  V  K  K  T  L  G  P  *  S  S  L  R  I  K  G  S  T  V  *  S  E  S  H  V  I  F  S  *  V  L  C  I  N  L  F  K  E  S  T  *  I  Y  V  F  I  S  S  N  F  F  D  Y  S  R  S  T  K  L  *  L  E  F  I   </first_frame>
            <second_frame>  S  Q  L  Q  I  S  S  P  F  L  A  N  F  R :   L  K  *  G  N  G  E  T  K  N  S  D  Q  E  D  R  Q  F  D  S  K  T  S  D  I  F  K  E  K  K  R  A  F  Q  K  S  S  R  A  F  N  S  L  *  C  *  Y  W  T  H  C  F  L  C  Y  W  K  T  F  *  V  F  K  L  Q  :  H  D  A  T  D  *  E  A  Q  D  A  V  R  K  G  W  Y  G  *  S  R  T  T  A  F  F  *  H  S   : E  R  E  E  N  P  C  N  A  *  Q  G  L  C  G  E  E  S  G  V  K  :  A  T  T  W  R  R  A  A  R  T  W  F  G  *  I  N  E  I  G  E  I  S  R  G  R  N  K  S  C  P  Q  N  *   : G  *  Q  V  Y  E  R  D  Q  F  P  Q  E  K   : G  S  *  T  P  G  R  E  F  T  V  E  K  A  I  T   : S  K  I  E  *  R  R  A  K  C  N  *  A  R  T  F  S  R  L  H  H  E  Q  S  Q  L  S  Q  *  L  R  Y  *  S  Q  V  M  :  L  G  F  S  L  V  S  S  I  H  M  K  M  G  D  N  I  V  T  Q  T  R  A  S  N  F  L  I  F  I  M  D  H  N  I  V  K  C  I  K  L  I  R  L  V  D  Q  A  P  L  K  K  H  W  D  H  R  V  H  *  E  S  K  G  Q  Q  S  N  Q  R  V  M  *  Y  L  A  R  C  Y  V  L  I  Y  L  K  N  Q  L  K  Y  M  Y  L  L  A  V  I  S  L  I  I  Q  E  A  P  N  F  N  *  N  S  Y  </second_frame>
            <third_frame>   H  N  F  R  S  L  L  H  F  L  Q  I  S   : G  *  S  K  E  M  V  R  Q  K  I  Q  I  K  K  I  D  N  L  T  A  R  Q  V  T  F  S  K  R  R  R  G  L  F  K  K  A  Q  E  L  S  T  L  C  D  A  D  I  G  L  I  V  F  S  A  T  G  K  L  F  E  Y  S  S  S  S :   M  M  Q  L  I  E  K  H  K  M  Q  S  E  R  D  G  M  D  N  P  E  Q  L  H  S  S  N  I  L  :  S  E  K  K  T  H  A  M  L  N  R  D  F  V  E  K  N  R  E  L  R :   Q  L  H  G  E  E  L  Q  G  L  G  L  D  E  L  M  K  L  E  K  L  V  E  G  G  I  S  R  V  L  K  I  K  :  G  D  K  F  M  K  E  I  S  S  L  K  K  K  :  E  A  K  L  Q  E  E  N  S  Q  L  K  K  Q  S  Q  :  A  R  L  N  E  E  G  Q  N  V  I  E  Q  G  H  S  A  D  S  I  T  N  N  R  S  L  V  N  D  S  D  T  S  L  K  L  C :   L  A  F  P  *  *  A  P  S  I  *  K  W  E  I  I  *  L  L  K  Q  G  R  V  I  F  *  Y  L  L  W  I  I  I  *  *  N  V  *  N  *  L  D  W  L  I  R  L  R  *  K  N  I  G  T  I  E  F  I  E  N  Q  R  V  N  S  L  I  R  E  S  C  D  I  *  L  G  A  M  Y  *  S  I  *  R  I  N  L  N  I  C  I  Y  *  Q  *  F  L  *  L  F  K  K  H  Q  T  L  I  R  I  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104416" stop="104606"/>
                    <exon start="108432" stop="108519"/>
                    <exon start="109276" stop="109337"/>
                    <exon start="109850" stop="109949"/>
                    <exon start="110565" stop="110606"/>
                    <exon start="111284" stop="111331"/>
                    <exon start="111414" stop="111523"/>
                    <exon start="111610" stop="111625"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKEMVRQKIQIKKIDNLTARQVTFSKRRRGLFKKAQELSTLCDADIGLIVFSATGKLFEYSSSSMMQLIEKHKMQSERDGMDNPEQLHSSNILSEKKTHAMLNRDFVEKNRELRQLHGEELQGLGLDELMKLEKLVEGGISRVLKIKGDKFMKEISSLKKKEAKLQEENSQLKKQSQARLNEEGQNVIEQGHSADSITNNRSLVNDSDTSLKLCLAFP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="112986" PGL_stop="118815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112986" e_stop="113052"/>
            <exon e_start="113547" e_stop="113609"/>
            <exon e_start="113801" e_stop="113884"/>
            <exon e_start="114588" e_stop="114695"/>
            <exon e_start="114795" e_stop="114967"/>
            <exon e_start="115088" e_stop="115199"/>
            <exon e_start="116198" e_stop="116278"/>
            <exon e_start="116362" e_stop="116424"/>
            <exon e_start="116758" e_stop="116859"/>
            <exon e_start="117014" e_stop="117138"/>
            <exon e_start="117439" e_stop="117649"/>
            <exon e_start="118141" e_stop="118215"/>
            <exon e_start="118461" e_stop="118815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.861" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112986" e_stop="113052" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="113053" i_stop="113546" i_length="494"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113547" e_stop="113609" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.713" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113610" i_stop="113800" i_length="191"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113801" e_stop="113884" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="113885" i_stop="114587" i_length="703"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114588" e_stop="114695" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.962">
            <gDNA_intron_boundary i_start="114696" i_stop="114794" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114795" e_stop="114967" e_length="173"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="114968" i_stop="115087" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="115088" e_stop="115199" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.861">
            <gDNA_intron_boundary i_start="115200" i_stop="116197" i_length="998"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="116198" e_stop="116278" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.941" acc_prob="0.990">
            <gDNA_intron_boundary i_start="116279" i_stop="116361" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="116362" e_stop="116424" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="116425" i_stop="116757" i_length="333"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="116758" e_stop="116859" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.893" acc_prob="0.992">
            <gDNA_intron_boundary i_start="116860" i_stop="117013" i_length="154"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="117014" e_stop="117138" e_length="125"/>
          </exon>
          <intron i_serial="10" don_prob="0.968" acc_prob="0.903">
            <gDNA_intron_boundary i_start="117139" i_stop="117438" i_length="300"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="117439" e_stop="117649" e_length="211"/>
          </exon>
          <intron i_serial="11" don_prob="0.986" acc_prob="0.990">
            <gDNA_intron_boundary i_start="117650" i_stop="118140" i_length="491"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="118141" e_stop="118215" e_length="75"/>
          </exon>
          <intron i_serial="12" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="118216" i_stop="118460" i_length="245"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="118461" e_stop="118815" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112986" stop="113052"/>
              <exon start="113547" stop="113609"/>
              <exon start="113801" stop="113884"/>
              <exon start="114588" stop="114695"/>
              <exon start="114795" stop="114967"/>
              <exon start="115088" stop="115199"/>
              <exon start="116198" stop="116278"/>
              <exon start="116362" stop="116424"/>
              <exon start="116758" stop="116859"/>
              <exon start="117014" stop="117138"/>
              <exon start="117439" stop="117649"/>
              <exon start="118141" stop="118215"/>
              <exon start="118461" stop="118815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTGTTCTCGGAACCGGACTCAAAGAATGCATTCTCAGCGGCCTTCTCTCCGTCGACGGCCTCAAA : GTACTACACATGGATAAAAATGACTATTATGGAGGAGAGTCAAGCTCACTTAATTTAATTCAG : CTTTGGAAACGGTTTAGGGGAAATGACCAGCCACCAGAAGAGTTGGGTACGAGCAAGGAATACAACGTTGACATGATTCCAAAG : TTTGCAATGGCAAATGGAACTCTGGTTCGTGTGCTTATCCACACTGATGTTACCAAGTACTTGAACTTCAAGGCTGTAGATGGTAGTTTTGTGTACAATAAAGGGAAG : ATCTACAAAGTTCCAGCAACTGATGTTGAAGCTCTGAAATCCCCATTGATGGGGCTCTTTGAAAAGCGTCGAGCTCGGAAGTTTTTTCTTTATGTGCAAGATTTTGAAGAGACTGATCCGAAAACTCATGAAGGGATGGATTTGAACAAAATCACTGCAAAAGAATTCATTGC : GAAATATGAACTCGAAGATGATACCATTGACTTTATTGGACATGCCTTGGCACTCTGTACAGATGATAACTATTTGGCCCAACCAGCTATGGATTTCATAAAGAGAGTAAAG : CTTTATGCAGAGTCTTTAGCACGCTTTCAAGCAGGATCCCCCTATATTTATCCATTGTACGGACTGGGTGAATTACCACAG : GCATTTGCACGCCTGAGTGCAGTTTATGGTGGAACTTACATGCTTAACAAGCCACAGTGTAAG : GTAGAGTTTGATGACGGTGGGAAAGTTGTTGGTGTGACTTCTGAAGGAGAAACTGCCAAATGCAAGAAAGTTGTTTGTGATCCCTCATATTTACCTGATAAG : GTCCAGAAGGTTGGAAAAGTTGCCCGTGCAATTTGTATAATGAGCCATCCCATCCCAAACACCAATGATTCTCATTCAGCCCAGGTCATTCTACCGCAGAAGCAACTCGGTCGCAAATCAGACAT : GTACCTGTTCTGTTGTTCCTACTCCCACAATGTCGCTCCAAAAGGCAAATATATTGCTTTTGTCTCAACAGAAGCTGAAACCGATGACCCTGAGAGCGAACTGAAGCCTGGCGTAGACATACTTGGGGCGGTCGATGAGATATTTTATGAAACTTATGACAGATTCATACCTTCACATGACTCTGCTGCTGATAATTGTTTCATATCTAAA : AGCTATGATTCAACAACACACTTTGAGTCCACAGTGATGGATGTGCTAGACATGTACAGCAAGATAACGGGAAAG : GTCATTGATTTATCAGTGGACCTGAGTGCTGCAAGTGCTACTGCTGAAGAATAAGCTTATTGTATCCACTTCATATGTATGCTGCAAAATAAGTCAGTAGAAGCCAATTTTGTATTGAAGAATATTTTCAGTTATCAACTCCCTAGCTAGTTGGTTCCTAAAATGGACCTTATTGGAGGCAAGAACTTGCTTTATGTGTATTTTTCATGTCCCTTATAGTTCTCTAATGATTTAACTTTTGGAAAGGTTTAGGAATAGTTTCTATGAATCCTTTCCATTACTATGTACTGATTTCATATTCCATCTTGTAAGGATTTCATAATTTGTATTTTGTCAAAAGGATGATGATGAAACT</gDNA_template>
            <first_frame> H  C  S  R  N  R  T  Q  R  M  H  S  Q  R  P  S  L  R  R  R  P  Q   : S  T  T  H  G  *  K  *  L  L  W  R  R  V  K  L  T  *  F  N  S   : A  L  E  T  V  *  G  K  *  P  A  T  R  R  V  G  Y  E  Q  G  I  Q  R  *  H  D  S  K   : V  C  N  G  K  W  N  S  G  S  C  A  Y  P  H  *  C  Y  Q  V  L  E  L  Q  G  C  R  W  *  F  C  V  Q  *  R  E   : D  L  Q  S  S  S  N  *  C  *  S  S  E  I  P  I  D  G  A  L  *  K  A  S  S  S  E  V  F  S  L  C  A  R  F  *  R  D  *  S  E  N  S  *  R  D  G  F  E  Q  N  H  C  K  R  I  H  C  :  E  I  *  T  R  R  *  Y  H  *  L  Y  W  T  C  L  G  T  L  Y  R  *  *  L  F  G  P  T  S  Y  G  F  H  K  E  S  K   : A  L  C  R  V  F  S  T  L  S  S  R  I  P  L  Y  L  S  I  V  R  T  G  *  I  T  T   : G  I  C  T  P  E  C  S  L  W  W  N  L  H  A  *  Q  A  T  V  *   : G  R  V  *  *  R  W  E  S  C  W  C  D  F  *  R  R  N  C  Q  M  Q  E  S  C  L  *  S  L  I  F  T  *  *   : G  P  E  G  W  K  S  C  P  C  N  L  Y  N  E  P  S  H  P  K  H  Q  *  F  S  F  S  P  G  H  S  T  A  E  A  T  R  S  Q  I  R  H  :  V  P  V  L  L  F  L  L  P  Q  C  R  S  K  R  Q  I  Y  C  F  C  L  N  R  S  *  N  R  *  P  *  E  R  T  E  A  W  R  R  H  T  W  G  G  R  *  D  I  L  *  N  L  *  Q  I  H  T  F  T  *  L  C  C  *  *  L  F  H  I  *   : K  L  *  F  N  N  T  L  *  V  H  S  D  G  C  A  R  H  V  Q  Q  D  N  G  K   : G  H  *  F  I  S  G  P  E  C  C  K  C  Y  C  *  R  I  S  L  L  Y  P  L  H  M  Y  A  A  K  *  V  S  R  S  Q  F  C  I  E  E  Y  F  Q  L  S  T  P  *  L  V  G  S  *  N  G  P  Y  W  R  Q  E  L  A  L  C  V  F  F  M  S  L  I  V  L  *  *  F  N  F  W  K  G  L  G  I  V  S  M  N  P  F  H  Y  Y  V  L  I  S  Y  S  I  L  *  G  F  H  N  L  Y  F  V  K  R  M  M  M  K   </first_frame>
            <second_frame>  I  V  L  G  T  G  L  K  E  C  I  L  S  G  L  L  S  V  D  G  L  K  :  V  L  H  M  D  K  N  D  Y  Y  G  G  E  S  S  S  L  N  L  I  Q  :  L  W  K  R  F  R  G  N  D  Q  P  P  E  E  L  G  T  S  K  E  Y  N  V  D  M  I  P  K  :  F  A  M  A  N  G  T  L  V  R  V  L  I  H  T  D  V  T  K  Y  L  N  F  K  A  V  D  G  S  F  V  Y  N  K  G  K  :  I  Y  K  V  P  A  T  D  V  E  A  L  K  S  P  L  M  G  L  F  E  K  R  R  A  R  K  F  F  L  Y  V  Q  D  F  E  E  T  D  P  K  T  H  E  G  M  D  L  N  K  I  T  A  K  E  F  I  A :   K  Y  E  L  E  D  D  T  I  D  F  I  G  H  A  L  A  L  C  T  D  D  N  Y  L  A  Q  P  A  M  D  F  I  K  R  V  K  :  L  Y  A  E  S  L  A  R  F  Q  A  G  S  P  Y  I  Y  P  L  Y  G  L  G  E  L  P  Q  :  A  F  A  R  L  S  A  V  Y  G  G  T  Y  M  L  N  K  P  Q  C  K  :  V  E  F  D  D  G  G  K  V  V  G  V  T  S  E  G  E  T  A  K  C  K  K  V  V  C  D  P  S  Y  L  P  D  K  :  V  Q  K  V  G  K  V  A  R  A  I  C  I  M  S  H  P  I  P  N  T  N  D  S  H  S  A  Q  V  I  L  P  Q  K  Q  L  G  R  K  S  D  M :   Y  L  F  C  C  S  Y  S  H  N  V  A  P  K  G  K  Y  I  A  F  V  S  T  E  A  E  T  D  D  P  E  S  E  L  K  P  G  V  D  I  L  G  A  V  D  E  I  F  Y  E  T  Y  D  R  F  I  P  S  H  D  S  A  A  D  N  C  F  I  S  K  :  S  Y  D  S  T  T  H  F  E  S  T  V  M  D  V  L  D  M  Y  S  K  I  T  G  K  :  V  I  D  L  S  V  D  L  S  A  A  S  A  T  A  E  E  *  A  Y  C  I  H  F  I  C  M  L  Q  N  K  S  V  E  A  N  F  V  L  K  N  I  F  S  Y  Q  L  P  S  *  L  V  P  K  M  D  L  I  G  G  K  N  L  L  Y  V  Y  F  S  C  P  L  *  F  S  N  D  L  T  F  G  K  V  *  E  *  F  L  *  I  L  S  I  T  M  Y  *  F  H  I  P  S  C  K  D  F  I  I  C  I  L  S  K  G  *  *  *  N  </second_frame>
            <third_frame>   L  F  S  E  P  D  S  K  N  A  F  S  A  A  F  S  P  S  T  A  S  K :   Y  Y  T  W  I  K  M  T  I  M  E  E  S  Q  A  H  L  I  *  F  S :   F  G  N  G  L  G  E  M  T  S  H  Q  K  S  W  V  R  A  R  N  T  T  L  T  *  F  Q  S :   L  Q  W  Q  M  E  L  W  F  V  C  L  S  T  L  M  L  P  S  T  *  T  S  R  L  *  M  V  V  L  C  T  I  K  G  R :   S  T  K  F  Q  Q  L  M  L  K  L  *  N  P  H  *  W  G  S  L  K  S  V  E  L  G  S  F  F  F  M  C  K  I  L  K  R  L  I  R  K  L  M  K  G  W  I  *  T  K  S  L  Q  K  N  S  L   : R  N  M  N  S  K  M  I  P  L  T  L  L  D  M  P  W  H  S  V  Q  M  I  T  I  W  P  N  Q  L  W  I  S  *  R  E  *  S :   F  M  Q  S  L  *  H  A  F  K  Q  D  P  P  I  F  I  H  C  T  D  W  V  N  Y  H  R :   H  L  H  A  *  V  Q  F  M  V  E  L  T  C  L  T  S  H  S  V  R :   *  S  L  M  T  V  G  K  L  L  V  *  L  L  K  E  K  L  P  N  A  R  K  L  F  V  I  P  H  I  Y  L  I  R :   S  R  R  L  E  K  L  P  V  Q  F  V  *  *  A  I  P  S  Q  T  P  M  I  L  I  Q  P  R  S  F  Y  R  R  S  N  S  V  A  N  Q  T   : C  T  C  S  V  V  P  T  P  T  M  S  L  Q  K  A  N  I  L  L  L  S  Q  Q  K  L  K  P  M  T  L  R  A  N  *  S  L  A  *  T  Y  L  G  R  S  M  R  Y  F  M  K  L  M  T  D  S  Y  L  H  M  T  L  L  L  I  I  V  S  Y  L  K :   A  M  I  Q  Q  H  T  L  S  P  Q  *  W  M  C  *  T  C  T  A  R  *  R  E  R :   S  L  I  Y  Q  W  T  *  V  L  Q  V  L  L  L  K  N  K  L  I  V  S  T  S  Y  V  C  C  K  I  S  Q  *  K  P  I  L  Y  *  R  I  F  S  V  I  N  S  L  A  S  W  F  L  K  W  T  L  L  E  A  R  T  C  F  M  C  I  F  H  V  P  Y  S  S  L  M  I  *  L  L  E  R  F  R  N  S  F  Y  E  S  F  P  L  L  C  T  D  F  I  F  H  L  V  R  I  S  *  F  V  F  C  Q  K  D  D  D  E  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112987" stop="113052"/>
                    <exon start="113547" stop="113609"/>
                    <exon start="113801" stop="113884"/>
                    <exon start="114588" stop="114695"/>
                    <exon start="114795" stop="114967"/>
                    <exon start="115088" stop="115199"/>
                    <exon start="116198" stop="116278"/>
                    <exon start="116362" stop="116424"/>
                    <exon start="116758" stop="116859"/>
                    <exon start="117014" stop="117138"/>
                    <exon start="117439" stop="117649"/>
                    <exon start="118141" stop="118215"/>
                    <exon start="118461" stop="118514"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1314</number_coding_nucleotides>
                  <number_encoded_amino_acids>438</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVLGTGLKECILSGLLSVDGLKVLHMDKNDYYGGESSSLNLIQLWKRFRGNDQPPEELGTSKEYNVDMIPKFAMANGTLVRVLIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFLYVQDFEETDPKTHEGMDLNKITAKEFIAKYELEDDTIDFIGHALALCTDDNYLAQPAMDFIKRVKLYAESLARFQAGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPQCKVEFDDGGKVVGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMSHPIPNTNDSHSAQVILPQKQLGRKSDMYLFCCSYSHNVAPKGKYIAFVSTEAETDDPESELKPGVDILGAVDEIFYETYDRFIPSHDSAADNCFISKSYDSTTHFESTVMDVLDMYSKITGKVIDLSVDLSAASATAEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="122444" PGL_stop="122877"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122444" e_stop="122877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122444" e_stop="122877" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122444" stop="122877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338256" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGGCGATCCATCGTCGACTATGACGAAGACGAGAAGCGACAGTCGAAACCCTGGCAAGAATAACGATCTCTCTGTTTTCGATTTTAGCCCTGAAGATGAACGCATTGAGAAACGCTCTAAAAAGTTATTGCAAACATTCAAAATTCAAAAACCTAACAACAAATTCCATTCTCCTATCGATAAGTATTGCTTTCTCCGTTGCTGTACGTTTCTGCAAAACCCTAATTTACTTTACAAACTCTTTTTCTTGTCTTTTTAACAATTATTCCAAGAAATTGAGTCCCATATGGATATAGCTTCATTATCTTATATAGTTGATGCTTTTAGTTTATCATCGTTTTCGTCAAATTGCATATTCTGAGTTGGAGTTAAGAGAAGGGGGAAAGTAGAAAGAACACCAGGAGATTGAAAAGAAGAGGAGTAACAGTGATG</gDNA_template>
            <first_frame> S  G  D  P  S  S  T  M  T  K  T  R  S  D  S  R  N  P  G  K  N  N  D  L  S  V  F  D  F  S  P  E  D  E  R  I  E  K  R  S  K  K  L  L  Q  T  F  K  I  Q  K  P  N  N  K  F  H  S  P  I  D  K  Y  C  F  L  R  C  C  T  F  L  Q  N  P  N  L  L  Y  K  L  F  F  L  S  F  *  Q  L  F  Q  E  I  E  S  H  M  D  I  A  S  L  S  Y  I  V  D  A  F  S  L  S  S  F  S  S  N  C  I  F  *  V  G  V  K  R  R  G  K  V  E  R  T  P  G  D  *  K  E  E  E  *  Q  *   </first_frame>
            <second_frame>  Q  A  I  H  R  R  L  *  R  R  R  E  A  T  V  E  T  L  A  R  I  T  I  S  L  F  S  I  L  A  L  K  M  N  A  L  R  N  A  L  K  S  Y  C  K  H  S  K  F  K  N  L  T  T  N  S  I  L  L  S  I  S  I  A  F  S  V  A  V  R  F  C  K  T  L  I  Y  F  T  N  S  F  S  C  L  F  N  N  Y  S  K  K  L  S  P  I  W  I  *  L  H  Y  L  I  *  L  M  L  L  V  Y  H  R  F  R  Q  I  A  Y  S  E  L  E  L  R  E  G  G  K  *  K  E  H  Q  E  I  E  K  K  R  S  N  S  D  </second_frame>
            <third_frame>   R  R  S  I  V  D  Y  D  E  D  E  K  R  Q  S  K  P  W  Q  E  *  R  S  L  C  F  R  F  *  P  *  R  *  T  H  *  E  T  L  *  K  V  I  A  N  I  Q  N  S  K  T  *  Q  Q  I  P  F  S  Y  R  *  V  L  L  S  P  L  L  Y  V  S  A  K  P  *  F  T  L  Q  T  L  F  L  V  F  L  T  I  I  P  R  N  *  V  P  Y  G  Y  S  F  I  I  L  Y  S  *  C  F  *  F  I  I  V  F  V  K  L  H  I  L  S  W  S  *  E  K  G  E  S  R  K  N  T  R  R  L  K  R  R  G  V  T  V  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122469" stop="122741"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRREATVETLARITISLFSILALKMNALRNALKSYCKHSKFKNLTTNSILLSISIAFSVAVRFCKTLIYFTNSFSCLFNNYSKKLSPIWI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0037D10.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122444" stop="122704"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGDPSSTMTKTRSDSRNPGKNNDLSVFDFSPEDERIEKRSKKLLQTFKIQKPNNKFHSPIDKYCFLRCCTFLQNPNLLYKLFFLSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 265 chains have been computed
$ 
$ memory statistics:
$ 1085800 bytes spliced alignments in total
$ 213 spliced alignments have been stored
$ 5097 bytes was the average size of a spliced alignment
$ 34368 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1636 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 293 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:14:22
-->
