<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:17:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT163-R" ref_strand="+" ref_description="CT163-R">
      <seq>aaacagggagatgaaaggggtctctaatgggagatccattccctttcttctcttcttcctttcgttttttcatcaattcatcacaggcttttcagacgattctttaaatcccagaaatggaacaaaagttgatagtcatgctgcatccagcagtaacactgggtcaattgtactcattgtatgtgttgcccttgtggcagtagtgcttctatcatttttccttttcaagttttggcaaaagaagaagcgtgaagagcagtatgctcgtctgctaaagttgtttgaagaagatgatgagcttgagcttgagctgggtcttcgggattaaatttgtgtcaaatgttaacgaccaatgtactgagatgtaagtagtaacttaaacccagattcttgattcaatgatgacaatgagttggattgattccagaatattgacataaatgaagagaaatcttcatttcacaatttgtagaaatatgtatcagtgttagcagaaacaaaactatcatgcattctgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0024O06.1" temp_strand="+" temp_description="C01HBa0024O06.1  AC238506.2 htgs_phase:3 submitted_to_sgn_as:C01HBa0024O06 upload_account_name:manual">
        <position start="39840" stop="44528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40140" g_stop="40225" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40226" i_stop="42246" i_length="2021">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42247" g_stop="42522" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="362" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42523" i_stop="44069" i_length="1547">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44070" g_stop="44228" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="521" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0024O06.1" gen_strand="+" ref_id="CT163-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0024O06.1" gen_strand="+"/>
        <rDNA rDNA_id="CT163-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40140" e_stop="40225"/>
          <exon e_start="42247" e_stop="42522"/>
          <exon e_start="44070" e_stop="44228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGGGAGATGAAAGGGGTCTCTAATGGGAGATCCATTCCCTTTCTTCTCTTCTTCCTTTCGTTTTTTCATCAATTCATCACAGGTTTGCATGCAATCACCCAGATCTTGATTTTCCCTTTTTTTTCCGATTCTATTTTAGTTGTATGATGGTTTTAATTGGTTATTTCATACTGGTGAATGTTCCTAATAGATCCTTTCTGTTTAAGAAAGAATGATGAGTTTGGAATTCGGAAATAAGAGTGTCAATTAACGATCTTGATTCAATTTGATATCATTTACCCTCTTTATTTTTTTCAAGAAAATGTGCAAAAAAAAATTGTAATAAAGCATAAAAAGAATAAAGATTGCGTATATAGGAAGCTAAGATGAATTTCTAATTTACTCTTGCTTTTTACTGTCGTATTTTGGGGCAACGGTTGTATGTGAAAAGGTTGTCAGTTTCTAATTGTCAGTATTCTGTCTGGGTTTGAGAAAAAGGGAGTCTTGTGACAAATTCAAGAAAATGAAGCTGATCTTGTCTTGATGTTACAACAACTAAATTACAGCTTCAGGTTCTTTTTCTTTTTGTTGTTGTTGTTGGTGGTGGTGAAATGAGTTACTATGGTTTTGACATGGGAAGAGGAGAGATGCAGATGCTCCAAAGAGGGGGGCTGAGAAGGTTTTCTGTGGTGAGCTTCATGAGAGGTAGAGGTAGGTCAAAGAAGTATTGGGGAAAAGGTGATTAGACAAGACATATCGCATCTCCAGCTTCCTGAGGAGGCAGTTTAGGGTGGTAGGTTAGTGGGTAGTTGAGTGTCCAACTAGATAGGCTTCTCCTTGTGTTTGCTATATCTCTACCATTTCTGAGTTGCCAAGGGTATGCAGTATACTTTACTATTTTGGGTAGAACTGCATGCAAATATTGACCAATTTGGAATATACCCTTATAGCTCTTAAATGGGAAAATGAGAAAACTATGTTTTAAAGGAGATAGTTGTTAAGTTGATCCAGCTGGCAGACCTCAAATTTGTAGACAATGGAGGAGAAATTGAGGAATGACAAAAATAACTGAAAAGGTGATGAAAATATCATGTTAATAATTTCGCTTTTGGTAAATGATTGCTAGTAGGTGAAAACAATATGCTATGTTTTTCTGCCTAGAGCTAATCATGACCTTCTTTCTTCTCAATCAATGGAACTTTGAGGATTGGTCCAATCCATTTGCCCAATATGCTGACAATGTCACCTAAGCACTCACCAATGCGGAAAGGAAAAGTCTGAAGCACTTCCCAGTACGTTGTTGAAGTTGCAAAATTTACAAGGAAAATGAGTATGATCAACTAGCCATACCGATTTACATGAGAGATTACTGCAGGATAAGCTTTCTGACTAGCCAGCAGACCATAATTTTAATCAAAGTGTCCCAGCTGGGCGTTGTAGAAAGAGACCACTGTCTTGTGCATTCAGTCCACTAGTAATGACTGCCCCGACATGGTTCCATTATTTATTTATTTTTGATGAAGTAATAGAAGATGTCATAGAAGCGACTACCTTACTTAAGCAATTCTTCTTATTCTTCTTCTTTCTTAGTTGAAGTTCCTATATTGGTTTTTTCTTTCTTTTATGAATGTTATTACGGGCATGACATGGTTCCATTATTTGAGTAAGCCCCGGTAAGGCTTAGACACTTGTATTTGTCCATCCCTTACCTTGACTCTTGACTGCTCCCAGTTCGATTGTTTGCTTCTCGTGAATTTAGTATCCAATCCTATATGTCTAATATTCATCATTTGCGTTCTCTTCACCATATCATACCATCTGGCACCATCTTCTATGTTTCTGGGACATAAAAAGGAGAGTCAGTGTTGTTGTGGAAAAGATTTGAGCTCAACTAGGGGTTCCACAATTTGTCCTTCCTTGACATGGAATCAGTATGCTATAATAATCTAGCTCCCCATAGGTGTTGCTGCCATTTTATGTTCTTTTGTCCTTGTTCAAAGATACCCAGGAAAAATATCCCATCAAACCTGTTTATGGTTACATTTTTATGAAAAGCATTCTTGTACTTGAATTTGTTTCGGTTTTGTCAGTTTGATTGTTTATATGTGTATTATTTACTTTCAGGCTTTTCAGACGATTCTTTAAATCCCAGAAATGGAACAAAAGTTGATAGTCATGCTGCATCCAGCAGTAACACTGGGTCAATTGTACTCATTGTATGTGTTGCCCTTGTGGCAGTAGTGCTTCTATCATTTTTCCTTTTCAAGTTTTGGCAAAAGAAGAAGCGTGAAGAGCAGTATGCTCGTCTGCTAAAGTTGTTTGAAGAAGATGATGAGCTTGAGCTTGAGCTGGGTCTTCGGGATTAAATTTGTGTCAAATGTTAACGACCAATGTACTGAGGTGAGGCTCCTTGTTGTACTCTCTTGGAAATGTTGCTCTGCTTTCTATTCCTAGCTTTTACATGGAATTTTGGAATTTATGTTTGGTGAATGAGCATAATGTTGTTAGCACATACCCCTTTTACCATTTAAGAAGACGTTCGGGTTCTTTTGAGTGTCTCAAAATGTTCAAAAATACTAACTCTGATCAACTGCATGTAAAATTTTTAGCTTAAACTGTAAACTGTGTAGTTCGGCTGTCTCTGTAAGTAATCTTATACAAAAACTTCAGCATGATATGAGAAATGCTTTTGTCTGGCATTACTGATGTCATACCTGAGCAAAGTAACTCTTTCAACCAACTTGCTTTGCCAAACTGTCGTATAAAAAATGGGAAGGAAGGAGCAAATATTACTCATTGTTCACCTTCCTAATGTTTATTACTGTATAGATATGCTATAAGGGTAGTCTTTAGTCATTTTTTTCATACAACTTTGTTCAGCATATCTGTAGGATGCTTTTATCTTTTTGTACAGTCTTCTTTTATTTCCTTTTTGTACCAAGTTGCAGGCAATCAAGCTATCTAGTCTTTGTTGTTGCTATGCTTTATCAGTAAAGTAGTTCCCTTCAGCTAATCTCAAAATTGTATCAAGATGAGTGATATATGGCTTGCTTTCTCTTGCCAAATATAACTGCAACAGAATCTTATGTTTCTCCTTTGCTAAATTCTTTCACCCTGATTTTCAGTTATTCTGTGTTGAGGTTGTCTTGTCTATTGGCAAAAAATATTGGAATGTGGAACTAATCAGATTTTATAAGTTATTAGCTTATGTGTGCTCTGTAAATTTAACGACTGGCATATATGCTCTAATAGTTTTCGTTACAAATGTTAAGGCCTGTTCTTGTATCAAATTTTATTAGCATGGGCTTATATGTGCCCTGTTATTATGCTTTATAAGTAACATACCTGTCTGTATACTTTGATTTGGTCTTGACTCCTAAGGGTGATTCCCCAGGAGGGCCTGGACAATTGTTTGATGTGCACATGGTATATTCTACGTAGTTTCTTTTAGTCTTTTGTAATTTGGCTGTTATATTATCATGTTACTATTTAGGCTCGAGTGTCAGCCTGTTCCTGTATCAGATTTTATAAGCATGAGCTTATATATGCCCTGTTATTATGCTTTATCAGTAACATAGTTCCTGTATGCTTTGATTTGGTCTCGACTCCTAGAGGTGATTCCCCAGGGGAAGGACTGGACAATTGTTTGATGTGCACGTGCTCTATTCTGCGTAGTTTCTTTAATCTTTTGTAATTTGGCTGTTATATTATCATGTTACTGTTTAGGCTCTTGAGTGTCAGTTTGTGTGGTCATGCTGATGAACAAGTATCTTTTTCTATTTCTTTTTTGAATGCCTATATGTTTTTTTTGGTATCCAGTATCTGCTGAAAATGTGATATTATATGCAAAGGCTGTCAACTATTTGGATAGATCAGTCTTGTCCGCTTTTTGCATCTCACTTTTGCTTTCAATTACTATTTACCTGATATCATCTCGTTGTGTGCAGATGTAAGTAGTAACTTAAACCCAGATTCTTGATTCAATGATGACAATGAGTTGGATTGATTCCAGAATATTGACATAAATGAAGAGAAATCTTCATTTCACAATTTGTAGAAATATGTATCAGTGTTAGCAGAAACAAAACTATCATGCATTCTGTTCT</genome_strand>
        <mrna_strand>AAACAGGGAGATGAAAGGGGTCTCTAATGGGAGATCCATTCCCTTTCTTCTCTTCTTCCTTTCGTTTTTTCATCAATTCATCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTCAGACGATTCTTTAAATCCCAGAAATGGAACAAAAGTTGATAGTCATGCTGCATCCAGCAGTAACACTGGGTCAATTGTACTCATTGTATGTGTTGCCCTTGTGGCAGTAGTGCTTCTATCATTTTTCCTTTTCAAGTTTTGGCAAAAGAAGAAGCGTGAAGAGCAGTATGCTCGTCTGCTAAAGTTGTTTGAAGAAGATGATGAGCTTGAGCTTGAGCTGGGTCTTCGGGATTAAATTTGTGTCAAATGTTAACGACCAATGTACTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAAGTAGTAACTTAAACCCAGATTCTTGATTCAATGATGACAATGAGTTGGATTGATTCCAGAATATTGACATAAATGAAGAGAAATCTTCATTTCACAATTTGTAGAAATATGTATCAGTGTTAGCAGAAACAAAACTATCATGCATTCTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT142-R" ref_strand="+" ref_description="CT142-R">
      <seq>aaacagggagatgaaaggggtctctaatgggagatccattccctttcttctcttcttcctttcgttttttcatcaattcatcacaggcttttcagacgattctttaaatcccagaaatggaacaaaagttgatagtcatgctgcatccagcagtaacactgggtcaattgtactcattgtatgtgttgcccttgtggcagtagtgcttctatcatttttccttttcaagttttggcaaaagaagaagcgtgaagagcagtatgctcgtctgctaaagttgtttgaagaagatgatgagcttgagcttgagctgggtcttcgggattaaatttgtgtcaaatgttaacgaccaatgtactgagatgtaagtagtaacttaaacccagattcttgattcaatgatgacaatgagttggattgattccagaatattgacataaatgaagagaaatcttcatttcacaatttgtagaaatatgtatcagtgttagcagaaacaaaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0024O06.1" temp_strand="+" temp_description="C01HBa0024O06.1  AC238506.2 htgs_phase:3 submitted_to_sgn_as:C01HBa0024O06 upload_account_name:manual">
        <position start="39840" stop="44513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40140" g_stop="40225" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40226" i_stop="42246" i_length="2021">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42247" g_stop="42522" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="362" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42523" i_stop="44069" i_length="1547">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44070" g_stop="44213" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="506" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0024O06.1" gen_strand="+" ref_id="CT142-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0024O06.1" gen_strand="+"/>
        <rDNA rDNA_id="CT142-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40140" e_stop="40225"/>
          <exon e_start="42247" e_stop="42522"/>
          <exon e_start="44070" e_stop="44213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGGGAGATGAAAGGGGTCTCTAATGGGAGATCCATTCCCTTTCTTCTCTTCTTCCTTTCGTTTTTTCATCAATTCATCACAGGTTTGCATGCAATCACCCAGATCTTGATTTTCCCTTTTTTTTCCGATTCTATTTTAGTTGTATGATGGTTTTAATTGGTTATTTCATACTGGTGAATGTTCCTAATAGATCCTTTCTGTTTAAGAAAGAATGATGAGTTTGGAATTCGGAAATAAGAGTGTCAATTAACGATCTTGATTCAATTTGATATCATTTACCCTCTTTATTTTTTTCAAGAAAATGTGCAAAAAAAAATTGTAATAAAGCATAAAAAGAATAAAGATTGCGTATATAGGAAGCTAAGATGAATTTCTAATTTACTCTTGCTTTTTACTGTCGTATTTTGGGGCAACGGTTGTATGTGAAAAGGTTGTCAGTTTCTAATTGTCAGTATTCTGTCTGGGTTTGAGAAAAAGGGAGTCTTGTGACAAATTCAAGAAAATGAAGCTGATCTTGTCTTGATGTTACAACAACTAAATTACAGCTTCAGGTTCTTTTTCTTTTTGTTGTTGTTGTTGGTGGTGGTGAAATGAGTTACTATGGTTTTGACATGGGAAGAGGAGAGATGCAGATGCTCCAAAGAGGGGGGCTGAGAAGGTTTTCTGTGGTGAGCTTCATGAGAGGTAGAGGTAGGTCAAAGAAGTATTGGGGAAAAGGTGATTAGACAAGACATATCGCATCTCCAGCTTCCTGAGGAGGCAGTTTAGGGTGGTAGGTTAGTGGGTAGTTGAGTGTCCAACTAGATAGGCTTCTCCTTGTGTTTGCTATATCTCTACCATTTCTGAGTTGCCAAGGGTATGCAGTATACTTTACTATTTTGGGTAGAACTGCATGCAAATATTGACCAATTTGGAATATACCCTTATAGCTCTTAAATGGGAAAATGAGAAAACTATGTTTTAAAGGAGATAGTTGTTAAGTTGATCCAGCTGGCAGACCTCAAATTTGTAGACAATGGAGGAGAAATTGAGGAATGACAAAAATAACTGAAAAGGTGATGAAAATATCATGTTAATAATTTCGCTTTTGGTAAATGATTGCTAGTAGGTGAAAACAATATGCTATGTTTTTCTGCCTAGAGCTAATCATGACCTTCTTTCTTCTCAATCAATGGAACTTTGAGGATTGGTCCAATCCATTTGCCCAATATGCTGACAATGTCACCTAAGCACTCACCAATGCGGAAAGGAAAAGTCTGAAGCACTTCCCAGTACGTTGTTGAAGTTGCAAAATTTACAAGGAAAATGAGTATGATCAACTAGCCATACCGATTTACATGAGAGATTACTGCAGGATAAGCTTTCTGACTAGCCAGCAGACCATAATTTTAATCAAAGTGTCCCAGCTGGGCGTTGTAGAAAGAGACCACTGTCTTGTGCATTCAGTCCACTAGTAATGACTGCCCCGACATGGTTCCATTATTTATTTATTTTTGATGAAGTAATAGAAGATGTCATAGAAGCGACTACCTTACTTAAGCAATTCTTCTTATTCTTCTTCTTTCTTAGTTGAAGTTCCTATATTGGTTTTTTCTTTCTTTTATGAATGTTATTACGGGCATGACATGGTTCCATTATTTGAGTAAGCCCCGGTAAGGCTTAGACACTTGTATTTGTCCATCCCTTACCTTGACTCTTGACTGCTCCCAGTTCGATTGTTTGCTTCTCGTGAATTTAGTATCCAATCCTATATGTCTAATATTCATCATTTGCGTTCTCTTCACCATATCATACCATCTGGCACCATCTTCTATGTTTCTGGGACATAAAAAGGAGAGTCAGTGTTGTTGTGGAAAAGATTTGAGCTCAACTAGGGGTTCCACAATTTGTCCTTCCTTGACATGGAATCAGTATGCTATAATAATCTAGCTCCCCATAGGTGTTGCTGCCATTTTATGTTCTTTTGTCCTTGTTCAAAGATACCCAGGAAAAATATCCCATCAAACCTGTTTATGGTTACATTTTTATGAAAAGCATTCTTGTACTTGAATTTGTTTCGGTTTTGTCAGTTTGATTGTTTATATGTGTATTATTTACTTTCAGGCTTTTCAGACGATTCTTTAAATCCCAGAAATGGAACAAAAGTTGATAGTCATGCTGCATCCAGCAGTAACACTGGGTCAATTGTACTCATTGTATGTGTTGCCCTTGTGGCAGTAGTGCTTCTATCATTTTTCCTTTTCAAGTTTTGGCAAAAGAAGAAGCGTGAAGAGCAGTATGCTCGTCTGCTAAAGTTGTTTGAAGAAGATGATGAGCTTGAGCTTGAGCTGGGTCTTCGGGATTAAATTTGTGTCAAATGTTAACGACCAATGTACTGAGGTGAGGCTCCTTGTTGTACTCTCTTGGAAATGTTGCTCTGCTTTCTATTCCTAGCTTTTACATGGAATTTTGGAATTTATGTTTGGTGAATGAGCATAATGTTGTTAGCACATACCCCTTTTACCATTTAAGAAGACGTTCGGGTTCTTTTGAGTGTCTCAAAATGTTCAAAAATACTAACTCTGATCAACTGCATGTAAAATTTTTAGCTTAAACTGTAAACTGTGTAGTTCGGCTGTCTCTGTAAGTAATCTTATACAAAAACTTCAGCATGATATGAGAAATGCTTTTGTCTGGCATTACTGATGTCATACCTGAGCAAAGTAACTCTTTCAACCAACTTGCTTTGCCAAACTGTCGTATAAAAAATGGGAAGGAAGGAGCAAATATTACTCATTGTTCACCTTCCTAATGTTTATTACTGTATAGATATGCTATAAGGGTAGTCTTTAGTCATTTTTTTCATACAACTTTGTTCAGCATATCTGTAGGATGCTTTTATCTTTTTGTACAGTCTTCTTTTATTTCCTTTTTGTACCAAGTTGCAGGCAATCAAGCTATCTAGTCTTTGTTGTTGCTATGCTTTATCAGTAAAGTAGTTCCCTTCAGCTAATCTCAAAATTGTATCAAGATGAGTGATATATGGCTTGCTTTCTCTTGCCAAATATAACTGCAACAGAATCTTATGTTTCTCCTTTGCTAAATTCTTTCACCCTGATTTTCAGTTATTCTGTGTTGAGGTTGTCTTGTCTATTGGCAAAAAATATTGGAATGTGGAACTAATCAGATTTTATAAGTTATTAGCTTATGTGTGCTCTGTAAATTTAACGACTGGCATATATGCTCTAATAGTTTTCGTTACAAATGTTAAGGCCTGTTCTTGTATCAAATTTTATTAGCATGGGCTTATATGTGCCCTGTTATTATGCTTTATAAGTAACATACCTGTCTGTATACTTTGATTTGGTCTTGACTCCTAAGGGTGATTCCCCAGGAGGGCCTGGACAATTGTTTGATGTGCACATGGTATATTCTACGTAGTTTCTTTTAGTCTTTTGTAATTTGGCTGTTATATTATCATGTTACTATTTAGGCTCGAGTGTCAGCCTGTTCCTGTATCAGATTTTATAAGCATGAGCTTATATATGCCCTGTTATTATGCTTTATCAGTAACATAGTTCCTGTATGCTTTGATTTGGTCTCGACTCCTAGAGGTGATTCCCCAGGGGAAGGACTGGACAATTGTTTGATGTGCACGTGCTCTATTCTGCGTAGTTTCTTTAATCTTTTGTAATTTGGCTGTTATATTATCATGTTACTGTTTAGGCTCTTGAGTGTCAGTTTGTGTGGTCATGCTGATGAACAAGTATCTTTTTCTATTTCTTTTTTGAATGCCTATATGTTTTTTTTGGTATCCAGTATCTGCTGAAAATGTGATATTATATGCAAAGGCTGTCAACTATTTGGATAGATCAGTCTTGTCCGCTTTTTGCATCTCACTTTTGCTTTCAATTACTATTTACCTGATATCATCTCGTTGTGTGCAGATGTAAGTAGTAACTTAAACCCAGATTCTTGATTCAATGATGACAATGAGTTGGATTGATTCCAGAATATTGACATAAATGAAGAGAAATCTTCATTTCACAATTTGTAGAAATATGTATCAGTGTTAGCAGAAACAAAACTAT</genome_strand>
        <mrna_strand>AAACAGGGAGATGAAAGGGGTCTCTAATGGGAGATCCATTCCCTTTCTTCTCTTCTTCCTTTCGTTTTTTCATCAATTCATCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTCAGACGATTCTTTAAATCCCAGAAATGGAACAAAAGTTGATAGTCATGCTGCATCCAGCAGTAACACTGGGTCAATTGTACTCATTGTATGTGTTGCCCTTGTGGCAGTAGTGCTTCTATCATTTTTCCTTTTCAAGTTTTGGCAAAAGAAGAAGCGTGAAGAGCAGTATGCTCGTCTGCTAAAGTTGTTTGAAGAAGATGATGAGCTTGAGCTTGAGCTGGGTCTTCGGGATTAAATTTGTGTCAAATGTTAACGACCAATGTACTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAAGTAGTAACTTAAACCCAGATTCTTGATTCAATGATGACAATGAGTTGGATTGATTCCAGAATATTGACATAAATGAAGAGAAATCTTCATTTCACAATTTGTAGAAATATGTATCAGTGTTAGCAGAAACAAAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT163-F" ref_strand="-" ref_description="CT163-F">
      <seq>gatgatgagcttgagcttgagctgggtcttcgggattaaatttgtgtcaaatgttaacgaccaatgtactgagatgtaagtagtaacttaaacccagattcttgattcaatgatgacaatgagttggattgattccagaatattgacataaatgaagagaaatcttcatttcacaatttgtagaaatatgtatcagtgttagcagaaacaaaactatcatgcattctgttttttgggtacagcgatcaatggataacagatattgccaatcgtcaccctcccaaatgaggattgtaattcatctgtcacaatttcactctgtaatagttgttagtaggtgtttgcagcttgttagattgctctaaaaattgaggaataattttaatcaaagctcaaatgagctagactgtacttcaagttgtgcaaatttgattttgtaccctctgatgtatcactaggccttaatatatttttgttctttgggtgttaaaaaaaaaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0024O06.1" temp_strand="+" temp_description="C01HBa0024O06.1  AC238506.2 htgs_phase:3 submitted_to_sgn_as:C01HBa0024O06 upload_account_name:manual">
        <position start="42150" stop="44787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42450" g_stop="42522" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42523" i_stop="44069" i_length="1547">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44070" g_stop="44491" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="495" r_length="422" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="496" polyA_stop="506"/>
      <MATCH_line gen_id="C01HBa0024O06.1" gen_strand="+" ref_id="CT163-F" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0024O06.1" gen_strand="+"/>
        <rDNA rDNA_id="CT163-F" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42450" e_stop="42522"/>
          <exon e_start="44070" e_stop="44491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGAGCTTGAGCTTGAGCTGGGTCTTCGGGATTAAATTTGTGTCAAATGTTAACGACCAATGTACTGAGGTGAGGCTCCTTGTTGTACTCTCTTGGAAATGTTGCTCTGCTTTCTATTCCTAGCTTTTACATGGAATTTTGGAATTTATGTTTGGTGAATGAGCATAATGTTGTTAGCACATACCCCTTTTACCATTTAAGAAGACGTTCGGGTTCTTTTGAGTGTCTCAAAATGTTCAAAAATACTAACTCTGATCAACTGCATGTAAAATTTTTAGCTTAAACTGTAAACTGTGTAGTTCGGCTGTCTCTGTAAGTAATCTTATACAAAAACTTCAGCATGATATGAGAAATGCTTTTGTCTGGCATTACTGATGTCATACCTGAGCAAAGTAACTCTTTCAACCAACTTGCTTTGCCAAACTGTCGTATAAAAAATGGGAAGGAAGGAGCAAATATTACTCATTGTTCACCTTCCTAATGTTTATTACTGTATAGATATGCTATAAGGGTAGTCTTTAGTCATTTTTTTCATACAACTTTGTTCAGCATATCTGTAGGATGCTTTTATCTTTTTGTACAGTCTTCTTTTATTTCCTTTTTGTACCAAGTTGCAGGCAATCAAGCTATCTAGTCTTTGTTGTTGCTATGCTTTATCAGTAAAGTAGTTCCCTTCAGCTAATCTCAAAATTGTATCAAGATGAGTGATATATGGCTTGCTTTCTCTTGCCAAATATAACTGCAACAGAATCTTATGTTTCTCCTTTGCTAAATTCTTTCACCCTGATTTTCAGTTATTCTGTGTTGAGGTTGTCTTGTCTATTGGCAAAAAATATTGGAATGTGGAACTAATCAGATTTTATAAGTTATTAGCTTATGTGTGCTCTGTAAATTTAACGACTGGCATATATGCTCTAATAGTTTTCGTTACAAATGTTAAGGCCTGTTCTTGTATCAAATTTTATTAGCATGGGCTTATATGTGCCCTGTTATTATGCTTTATAAGTAACATACCTGTCTGTATACTTTGATTTGGTCTTGACTCCTAAGGGTGATTCCCCAGGAGGGCCTGGACAATTGTTTGATGTGCACATGGTATATTCTACGTAGTTTCTTTTAGTCTTTTGTAATTTGGCTGTTATATTATCATGTTACTATTTAGGCTCGAGTGTCAGCCTGTTCCTGTATCAGATTTTATAAGCATGAGCTTATATATGCCCTGTTATTATGCTTTATCAGTAACATAGTTCCTGTATGCTTTGATTTGGTCTCGACTCCTAGAGGTGATTCCCCAGGGGAAGGACTGGACAATTGTTTGATGTGCACGTGCTCTATTCTGCGTAGTTTCTTTAATCTTTTGTAATTTGGCTGTTATATTATCATGTTACTGTTTAGGCTCTTGAGTGTCAGTTTGTGTGGTCATGCTGATGAACAAGTATCTTTTTCTATTTCTTTTTTGAATGCCTATATGTTTTTTTTGGTATCCAGTATCTGCTGAAAATGTGATATTATATGCAAAGGCTGTCAACTATTTGGATAGATCAGTCTTGTCCGCTTTTTGCATCTCACTTTTGCTTTCAATTACTATTTACCTGATATCATCTCGTTGTGTGCAGATGTAAGTAGTAACTTAAACCCAGATTCTTGATTCAATGATGACAATGAGTTGGATTGATTCCAGAATATTGACATAAATGAAGAGAAATCTTCATTTCACAATTTGTAGAAATATGTATCAGTGTTAGCAGAAACAAAACTATCATGCATTCTGTTCTTTGGGTACAGCGATCAATGGATAACAGATATTGCCAAACGTCACCCTCCCAAATGAGGATTGTAATTCATCTGTCACAATTTCACTCTGTAATAGTTGTTAGTAGGTGTTTGCAGCTTGTTAGATTGCTCTAAAAATTGAGGAATAATTTTAATCAAAGCTCAAATGAGCTAGACTGTACTTCAAGTTGTGCAAATTTGATTTTGTACCCTCTGATGTATCACTAGGCCTTAATATATTTTTGTTCTTTGTGTGTTAGATGTT</genome_strand>
        <mrna_strand>GATGATGAGCTTGAGCTTGAGCTGGGTCTTCGGGATTAAATTTGTGTCAAATGTTAACGACCAATGTACTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAAGTAGTAACTTAAACCCAGATTCTTGATTCAATGATGACAATGAGTTGGATTGATTCCAGAATATTGACATAAATGAAGAGAAATCTTCATTTCACAATTTGTAGAAATATGTATCAGTGTTAGCAGAAACAAAACTATCATGCATTCTGTTTTTTGGGTACAGCGATCAATGGATAACAGATATTGCCAATCGTCACCCTCCCAAATGAGGATTGTAATTCATCTGTCACAATTTCACTCTGTAATAGTTGTTAGTAGGTGTTTGCAGCTTGTTAGATTGCTCTAAAAATTGAGGAATAATTTTAATCAAAGCTCAAATGAGCTAGACTGTACTTCAAGTTGTGCAAATTTGATTTTGTACCCTCTGATGTATCACTAGGCCTTAATATATTTTTGTTCTTTGGGTGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT142-F" ref_strand="-" ref_description="CT142-F">
      <seq>agctgggtcttcgggattaaatttgtgtcaaatgttaacgaccaatgtactgagatgtaagtagtaacttaaacccagattcttgattcaatgatgacaatgagttggattgattccagaatattgacataaatgaagagaaatcttcatttcacaatttgtagaaatatgtatcagtgttagcagaaacaaaactatcatgcattctgttctttgggtacagcgatcaatggataacagatattgccaatcgtcaccctcccaaatgaggattgtaattcatctgtcacaatttcactctgtaatagttgttagtaggtgtttgcagcttgttagattgctctaaaaattgaggaataattttaatcaaagctcaaatgagctagactgtacttcaagttgtgcaaatttgattttgtaccctctgatgtatcactaggccttaatatatttttgttctttgtgtgttaaaaaaaaaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0024O06.1" temp_strand="+" temp_description="C01HBa0024O06.1  AC238506.2 htgs_phase:3 submitted_to_sgn_as:C01HBa0024O06 upload_account_name:manual">
        <position start="42169" stop="44787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42469" g_stop="42522" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42523" i_stop="44069" i_length="1547">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44070" g_stop="44491" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="476" r_length="422" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="487"/>
      <MATCH_line gen_id="C01HBa0024O06.1" gen_strand="+" ref_id="CT142-F" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0024O06.1" gen_strand="+"/>
        <rDNA rDNA_id="CT142-F" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42469" e_stop="42522"/>
          <exon e_start="44070" e_stop="44491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGGGTCTTCGGGATTAAATTTGTGTCAAATGTTAACGACCAATGTACTGAGGTGAGGCTCCTTGTTGTACTCTCTTGGAAATGTTGCTCTGCTTTCTATTCCTAGCTTTTACATGGAATTTTGGAATTTATGTTTGGTGAATGAGCATAATGTTGTTAGCACATACCCCTTTTACCATTTAAGAAGACGTTCGGGTTCTTTTGAGTGTCTCAAAATGTTCAAAAATACTAACTCTGATCAACTGCATGTAAAATTTTTAGCTTAAACTGTAAACTGTGTAGTTCGGCTGTCTCTGTAAGTAATCTTATACAAAAACTTCAGCATGATATGAGAAATGCTTTTGTCTGGCATTACTGATGTCATACCTGAGCAAAGTAACTCTTTCAACCAACTTGCTTTGCCAAACTGTCGTATAAAAAATGGGAAGGAAGGAGCAAATATTACTCATTGTTCACCTTCCTAATGTTTATTACTGTATAGATATGCTATAAGGGTAGTCTTTAGTCATTTTTTTCATACAACTTTGTTCAGCATATCTGTAGGATGCTTTTATCTTTTTGTACAGTCTTCTTTTATTTCCTTTTTGTACCAAGTTGCAGGCAATCAAGCTATCTAGTCTTTGTTGTTGCTATGCTTTATCAGTAAAGTAGTTCCCTTCAGCTAATCTCAAAATTGTATCAAGATGAGTGATATATGGCTTGCTTTCTCTTGCCAAATATAACTGCAACAGAATCTTATGTTTCTCCTTTGCTAAATTCTTTCACCCTGATTTTCAGTTATTCTGTGTTGAGGTTGTCTTGTCTATTGGCAAAAAATATTGGAATGTGGAACTAATCAGATTTTATAAGTTATTAGCTTATGTGTGCTCTGTAAATTTAACGACTGGCATATATGCTCTAATAGTTTTCGTTACAAATGTTAAGGCCTGTTCTTGTATCAAATTTTATTAGCATGGGCTTATATGTGCCCTGTTATTATGCTTTATAAGTAACATACCTGTCTGTATACTTTGATTTGGTCTTGACTCCTAAGGGTGATTCCCCAGGAGGGCCTGGACAATTGTTTGATGTGCACATGGTATATTCTACGTAGTTTCTTTTAGTCTTTTGTAATTTGGCTGTTATATTATCATGTTACTATTTAGGCTCGAGTGTCAGCCTGTTCCTGTATCAGATTTTATAAGCATGAGCTTATATATGCCCTGTTATTATGCTTTATCAGTAACATAGTTCCTGTATGCTTTGATTTGGTCTCGACTCCTAGAGGTGATTCCCCAGGGGAAGGACTGGACAATTGTTTGATGTGCACGTGCTCTATTCTGCGTAGTTTCTTTAATCTTTTGTAATTTGGCTGTTATATTATCATGTTACTGTTTAGGCTCTTGAGTGTCAGTTTGTGTGGTCATGCTGATGAACAAGTATCTTTTTCTATTTCTTTTTTGAATGCCTATATGTTTTTTTTGGTATCCAGTATCTGCTGAAAATGTGATATTATATGCAAAGGCTGTCAACTATTTGGATAGATCAGTCTTGTCCGCTTTTTGCATCTCACTTTTGCTTTCAATTACTATTTACCTGATATCATCTCGTTGTGTGCAGATGTAAGTAGTAACTTAAACCCAGATTCTTGATTCAATGATGACAATGAGTTGGATTGATTCCAGAATATTGACATAAATGAAGAGAAATCTTCATTTCACAATTTGTAGAAATATGTATCAGTGTTAGCAGAAACAAAACTATCATGCATTCTGTTCTTTGGGTACAGCGATCAATGGATAACAGATATTGCCAAACGTCACCCTCCCAAATGAGGATTGTAATTCATCTGTCACAATTTCACTCTGTAATAGTTGTTAGTAGGTGTTTGCAGCTTGTTAGATTGCTCTAAAAATTGAGGAATAATTTTAATCAAAGCTCAAATGAGCTAGACTGTACTTCAAGTTGTGCAAATTTGATTTTGTACCCTCTGATGTATCACTAGGCCTTAATATATTTTTGTTCTTTGTGTGTTAGATGTT</genome_strand>
        <mrna_strand>AGCTGGGTCTTCGGGATTAAATTTGTGTCAAATGTTAACGACCAATGTACTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAAGTAGTAACTTAAACCCAGATTCTTGATTCAATGATGACAATGAGTTGGATTGATTCCAGAATATTGACATAAATGAAGAGAAATCTTCATTTCACAATTTGTAGAAATATGTATCAGTGTTAGCAGAAACAAAACTATCATGCATTCTGTTCTTTGGGTACAGCGATCAATGGATAACAGATATTGCCAATCGTCACCCTCCCAAATGAGGATTGTAATTCATCTGTCACAATTTCACTCTGTAATAGTTGTTAGTAGGTGTTTGCAGCTTGTTAGATTGCTCTAAAAATTGAGGAATAATTTTAATCAAAGCTCAAATGAGCTAGACTGTACTTCAAGTTGTGCAAATTTGATTTTGTACCCTCTGATGTATCACTAGGCCTTAATATATTTTTGTTCTTTGTGTGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1253" ref_strand="+" ref_description="T1253">
      <seq>aacaatcgcaatgaaattggaaaaattagggcaaaacaattgtgaatttcgtcaatcgatattgtggaagctctaagggaagatgtgaatttgtgatttctaattttctttattttctttttcttggtgtaaaagatcaaaggaaaaagtattcgcatgaaggggccgttagatcgatcaaaagtagtgctgcggcacttgccgccgacaatttctcagtccatgcttcttgaccaagttgattcccgattcgctggtcgatacaactggttctgttttctacccggcaagtccagtcagaagcatcaaacttattcaagagcctatattgaatttaagaggccagaagatgttatcgagtttgcagagttctttgatggacacgtttttgtaaacgagaaaggcactcagttcaaaactattgtcgagtatgctccttcacagcgtgttccacaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0024O06.1" temp_strand="+" temp_description="C01HBa0024O06.1  AC238506.2 htgs_phase:3 submitted_to_sgn_as:C01HBa0024O06 upload_account_name:manual">
        <position start="59905" stop="63513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60205" g_stop="60500" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60501" i_stop="62837" i_length="2337">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62838" g_stop="62944" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="403" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62945" i_stop="63156" i_length="212">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.902" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63157" g_stop="63213" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="460" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0024O06.1" gen_strand="+" ref_id="T1253" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0024O06.1" gen_strand="+"/>
        <rDNA rDNA_id="T1253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60205" e_stop="60500"/>
          <exon e_start="62838" e_stop="62944"/>
          <exon e_start="63157" e_stop="63213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTCGCAATGAAATTGGAAAAATTAGGGCAAAACAATTGTGAATTTCGTCAATCGATGTTGTGGAAGCTCTAAGGGGAGATGTGAATTTGTGATTTCTAATTTTCTTTATTTTCTTTTTCTTGGTGTAAAAGATCAAAGGAAAAAGTATTCGCATGAAGGGGCCGTTAGATCGATCAAAAGTAGTGCTGCGGCACTTGCCGCCGACAATTTCTCAGTCCATGCTTCTTGACCAAGTTGATTCCCGATTCGCTGGTCGATACAACTGGTTCTGTTTTCTACCCGGCAAGTCCAGGTTAGGGTTTTGAGTTCTTGGTTTTCAAACTAATTTTGGCGTTTTTTTTAAATACAAATTTTACTTACTGGGACTGATTGATTGTGTAGTTAATTATAACCGATTATGGAAAAAGAAAGAAAGAAATCAAAGATTATATCTGGATTCTTGATTTCCGAGTTCTTGATTTTTCATGAAAATTTTGTGTGTTTAGGTAATATGGTTCCTGGCTCCTGATTAAGATTGTATAGGCAATAATAACCCCATCCAACAAAGGATATAAAGAAAGAAAGAAAGTAAAGAAAATCAAAGATTCTATCAGGAGTCTTAACTTCATGTTGATTTTGATAGGTTGTGAACTTCCGAATTTTTTTTGAAGATTTTTATTTCTTGAATGGATAGAATTGGATATTATTGAAAAAACACAGCACCAACCAAATATTTATTTACACCAAGATGCAAGAAATCATGTTATGTAGGCAAGCTTTGTAAGTATTTCTTTATATTGTATGTGTTCGTTTAGGTTTCAGATTGTCAGTAGTGTCACTGATTGATTGTTATTTGTTGTTGATTGGAGAGACAGGTATGTTTTTGGTAGATTTGGTTGCACAAATACCAGATATCCTGTTAAAAAGTGGTCACGCTTAAGGAGTTGAAATACCCCTTAAAGAAAAGAAAGCAGCGCTGCAATAAATATTCCCTCCCTTTTGTTTGCATGTAAAGGGCATGGTTGCAAATGAGATCGTTGTTGGTGTAGTTGTCTGTATTGTGCTATCATTCTTTCGTAGCTTGTTTTCCTTGGTGAGAGACTGGGGTCTTCTGGATTTTTTATATTTTTTTCTTTTCTGGGTCTTCTGGATTGATTCACCTGTACCTATGATTTTATCCTTATTTTCCCTTCTTTAATGTCTCTCATTATTTGGAGATCTCTTTTGGATGGTAAAACTTTTTGCATAATTAGTACAAATACGAATTGAGCAGTTTATTCAGATAAGGTGATAGCGTTTATTTCCTTAACTTGTATAGGTATTTTTGTTAGAGCAATGACCGGGTGTGCTGCATATTGAAGAAAACTGTGAACTAGATTGCCACCTGTATGAGAGTGTTTGCCAGTGATAGCTCTGAATCTAATTTAAAGCATTGTAGTTTGTCCAGTCTGTTCTTTTCTTATTTTGTTTTATCCGGATATGCGTTGATACAGGTTATCTGGAAATTAATTCATCAAATTTATCGTCTTTTCTAGAAAACTTACCGGAATTTACGTTTTTGTCCTAGCTCACCTCATTTACCGTAGTCCTTGCTAGTTGGAGATTTTTTGTTGGATGGTCTATCTATTTTCAGAATCTATACGGAGTTGAATTATTTTGCAAATTAGGGAGATTATCTTTACTGCCTTTACTTGTTAGACTTTAGTCAGAAATACTAACTGCTGTGGTGCTGTTTGGAAGAAAATGCTGACTAGATTGCCACCGTAAGAGGGGTTCACACTTTTGGAAAGCAGATTTTGAAGTCACTTATCTGTGTTTTTTCCTTTCCATCTCTTTTTCTTCTGGAACGGTATGCCTTCCTCAAATTTGCTTGAAATGGGGGGTGGAATGTTTATCAATGAAGGATGATCTCACCTCTATTGTTTTGATTACAAATTAAAATTGATGAGGTGCTGTTGTGAAGAGAATGTTGAACTAGATTATACTGCCACTTGGGCAAATGGGTTGCCAAAAACTGCTTTTGGTGTAATGTAACATCCTTTTGTGTGAGTATTTTAGTTCTTATCTTTGTCAAGTTTGGTCCAAAAGACCCTTTATTAGTCTATTTATCCCCCCCCCTCCCCACCCAAATACACACACAAAAATAAAATTTTAAAAAGACACCTTTTTTTTGCTTTCTTATATCCAGGTGATCTTTTGGATTGCTATAATCCTATAACTTCTTATCCACATCGATGCATGCTTAGACATCATAGAAAACATTGTCAGGGGATACTTTATCTCCATTTGTTGGTACTTCCTATTTACATTTACTCACGCGTGTTTAACTGTGTACACAGTACACACCTTTTTTTAAGAATGATAGTACGTATATTATTATGTAGATGCTTATCCTAGTTTTCCATTCACTGAAGTTTCAGTTGGATCAATGTCCTTGATGGATTTTATTTTATCCTTATGCCCATTGTAATTTTTCTTTATTATTTACTCTGTTGGTAAGATTATTTAACTGTGTTCCATTCTAAAATTTTTATTTTCCCAGCTCTTTACACAACATGAACTTAATATGCTTTAGGTTGCCAAAAGTGTACTTTGTTTTTCAAGTTTAGTGTCCCTCATAGTTTCCTTTACCTCAATTTTTCTCCTGCAGTCAGAAGCATCAAACTTATTCAAGAGCCTATATTGAATTTAAGAGGCCAGAAGATGTTATCGAGTTTGCGGAGTTCTTTGATGGACACGTTTTTGTAAACGAGAAAGGTAAAGAAATTTGGCCTAAATCTGTATTCTCCCTTCCATATGATGTTTAAAATTGTTTTAAATCCACCCGGACATCTTGCTACAGGCTTAAAGTTCTTATCCTGTTAATTGTAACAAGAAAAGTTTGAGCCCTTGCTTTATCTGGGTCCTGACAGTTCTCAGTTTTGCAATTATATTGATATGTTTCTTACCCTAGTGTATGTCTGTACTAGGCACTCAGTTCAAAACTATTGTTGAGTATGCTCCTTCACAGCGTGTTCCACAACACT</genome_strand>
        <mrna_strand>AACAATCGCAATGAAATTGGAAAAATTAGGGCAAAACAATTGTGAATTTCGTCAATCGATATTGTGGAAGCTCTAAGGGAAGATGTGAATTTGTGATTTCTAATTTTCTTTATTTTCTTTTTCTTGGTGTAAAAGATCAAAGGAAAAAGTATTCGCATGAAGGGGCCGTTAGATCGATCAAAAGTAGTGCTGCGGCACTTGCCGCCGACAATTTCTCAGTCCATGCTTCTTGACCAAGTTGATTCCCGATTCGCTGGTCGATACAACTGGTTCTGTTTTCTACCCGGCAAGTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGCATCAAACTTATTCAAGAGCCTATATTGAATTTAAGAGGCCAGAAGATGTTATCGAGTTTGCAGAGTTCTTTGATGGACACGTTTTTGTAAACGAGAAAG....................................................................................................................................................................................................................GCACTCAGTTCAAAACTATTGTCGAGTATGCTCCTTCACAGCGTGTTCCACAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1118" ref_strand="+" ref_description="T1118">
      <seq>ggtaaagaaaaaatggcatgtatgtcactcaatataggagctgcttctgctttgaagtttgtaagcaattcccaaaatcatccagtaaagctgttctcggctaaagaacaacgttgttccaacttcagttccagcaattggggttgtttcagtcttcgagttcgtcggagttcttgccttcgttttgatacacaaaaatctttcgccgttttcaacagccttccagtggataatagcaaccccaaagaaagtgtggttgtcttggtaattggaggaggtgggagagagcatgcgctttgtcatgctttgaggcgatccccttcttgtgacgctattttctgtgcaccgggtaatgctggaatttccagctcaggtgatgcgacttgtatatcagaccttgatgttttagatagttcaactgtgattgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0024O06.1" temp_strand="+" temp_description="C01HBa0024O06.1  AC238506.2 htgs_phase:3 submitted_to_sgn_as:C01HBa0024O06 upload_account_name:manual">
        <position start="90637" stop="92104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90937" g_stop="91180" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91181" i_stop="91616" i_length="436">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91617" g_stop="91804" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="432" r_length="188" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0024O06.1" gen_strand="+" ref_id="T1118" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0024O06.1" gen_strand="+"/>
        <rDNA rDNA_id="T1118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90937" e_stop="91180"/>
          <exon e_start="91617" e_stop="91804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAAAGAAAAAATGGCATGTATGTCACTCAATATAGGAGCTGCTTCTGCTTTGAAGTTTGTAAGCAATTCCCAAAATCATCCAGTAAAGCTGTTCTCGGCTAAAGAACAACGTTGTTCCAACTTCAGTTCCAGCAATTGGGGTTGTTTCAGTCTTCGAGTTCGTCGGAGTTCTTGCCTTCGTTTTGATACACAAAAATCTTTCGCCGTTTTCAACAGCCTTCCAGTGGATAATAGCAACCCCAGTAAGAACTACAGCACCCATTTTGTCTTTCTATGTGTTTGTAAGAATCGGAAAAACTGAGAAATTCGGTGTTTTGATTGCTTCCCCTCAGTTTTTGTCATTTGGTTGGCTAAAAAATGTCTTGGGAATTTTGCCTATTCGAATGTGATTCTATTACCTCTCACTGAAGGGATATGTTAATACCTGCTTCTTTTATTAGATATTGATTTTCACTTCCCCTTAAGAGTAGAGAATGAATTTTGAGTTGTTATTCAATAGCTTGGAATTGCCTTGTAATGCCGGAAGACCCTTTCTTTTCGTCTTTTTCAATACTAAGTATTGTCTTTTGGTGTTTATATTTATCTGGCACATACAGATACAGTAGCTGTTGCTCTGCGATAGATATTGTACAAGTTCCTTAGCATTATTTATTGATTCCTTTCTAATTGTTATTATAGAGGAAAGTGTGGTTGTCTTGGTAATTGGAGGAGGTGGGAGAGAGCATGCGCTTTGTCATGCTTTGAGGCGATCCCCTTCTTGTGACGCTATTTTCTGTGCACCGGGTAATGCTGGAATTTCCAGCTCAGGTGATGCGACTTGTATATCAGACCTTGATGTTTTAGATAGTTCAGCTGTGATTGCTTTC</genome_strand>
        <mrna_strand>GGTAAAGAAAAAATGGCATGTATGTCACTCAATATAGGAGCTGCTTCTGCTTTGAAGTTTGTAAGCAATTCCCAAAATCATCCAGTAAAGCTGTTCTCGGCTAAAGAACAACGTTGTTCCAACTTCAGTTCCAGCAATTGGGGTTGTTTCAGTCTTCGAGTTCGTCGGAGTTCTTGCCTTCGTTTTGATACACAAAAATCTTTCGCCGTTTTCAACAGCCTTCCAGTGGATAATAGCAACCCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAGTGTGGTTGTCTTGGTAATTGGAGGAGGTGGGAGAGAGCATGCGCTTTGTCATGCTTTGAGGCGATCCCCTTCTTGTGACGCTATTTTCTGTGCACCGGGTAATGCTGGAATTTCCAGCTCAGGTGATGCGACTTGTATATCAGACCTTGATGTTTTAGATAGTTCAACTGTGATTGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g09830" ref_strand="+" ref_description="C2_At1g09830">
      <seq>gtcagaagcagctgctttagaaggttcgaagaacttcatgaagagcttatgtgataaatatggaattccaactgcaaagtatcaagcatttacagacccatccgctgcaaaagagtacatcaaacaggaaggtgccccaattgttgttaaagcggatggattggctgctggtaaaggagtgattgttgccatgacattggagcaagcatatgaggctgttgattctatgcttgtagacaatgtttttggttctgctggctctcgagtcgttgtagaggaatatttggaaggagaggaagcatcattttttgctctagtagatggtgagcatgccatacctctggaatctgctcaagaccacaaacgagttggggatggcgatacaggaccaaatactggtgggatgggggcatattctccagctcctgtcttgacaaaggaactgcaatcaatggtcatggagtctataattttccctacagtgaagggaatggccgaagaaggctgcaagtttgttggggttctgtatgctgggctcatgatcgagaagaaatctggtttgccaaagttaattgagtacaatgtacgctttggagatccagagtgtcaggtattgatggtccggntagagtctgatttggtcaaattttgctggcagcttgccatgggaagctacatgggatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0024O06-0rbBU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0024O06.1" temp_strand="+" temp_description="C01HBa0024O06.1  AC238506.2 htgs_phase:3 submitted_to_sgn_as:C01HBa0024O06 upload_account_name:manual">
        <position start="91613" stop="94273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91912" g_stop="91990" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91991" i_stop="92085" i_length="95">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92086" g_stop="92616" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="610" r_length="531" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92617" i_stop="93896" i_length="1280">
            <donor d_prob="0.962" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93897" g_stop="93973" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="686" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0024O06.1" gen_strand="+" ref_id="C2_At1g09830" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0024O06.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At1g09830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91912" e_stop="91990"/>
          <exon e_start="92086" e_stop="92616"/>
          <exon e_start="93897" e_stop="93973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAAGCAGCTGCTTTAGAAGGTTCTAAGAACTTCATGAAGAGCTTATGTGATAAATATGGAATTCCAACTGCAAAGGTCTGTGCGTACTTCTAGTTCCATCTATATTTACTTGTTTTTCTTGTTTTGGTTCACTTCATATCTTGACTTTATCTATGGTGGAATATCTGCAGTATCAAGCATTTACAGACCCATCCGCTGCAAAAGAGTACATCAAACAGGAAGGTGCCCCAATTGTTGTTAAAGCGGATGGATTGGCTGCTGGTAAAGGAGTGATTGTTGCCATGACATTAGAGCAAGCATATGAGGCTGTTGATTCTATGCTTGTAGACAATGTTTTTGGTTCTGCTGGCTCTCGAGTCATTGTAGAGGAATATTTGGAAGGAGAGGAAGCATCATTTTTTGCTCTAGTAGATGGTGAGCATGCCATACCTCTGGAATCTGCTCAAGACCACAAACGAGTTGGAGATGGAGATACAGGACCAAATACTGGTGGGATGGGGGCATATTCTCCAGCTCCTGTCTTGACAAAGGAACTGCAATCAATGGTCATGGAGTCTATCATTTTCCCTACAGTGAAGGGAATGGCCGAAGAAGGCTGCAAGTTTGTTGGGGTTCTGTATGCTGGGCTCATGATCGAGAAGAAATCTGGTTTGCCGAAGTTAATTGAGTACAATGTACGCTTTGGAGATCCAGAATGTCAGGTTAGTTGGATTTGACTTGCCAGGTGCAATCAAACTTTTTATGTTCTAATTGCAATTTGTGTTAGTACCATTGATCCTAGTTTCATATTACACATAGGAAAGCATCAGACTTTTTGGTTCTTCACTTTGGTATATGTTGAATTTGTTATGTGAAACATACTGCTTTTCTATTACATGATTTGGCATTTGCTATGCTTAGTTGCGCGGACTCTTCACTTTTGATGCCGCACCCGTCTCGGATTCTTCAAAAATACACTACTTTTGGCGAATCTGACACGCACCCATTGGCGTTTTTGGAGAGTCCGAGCAACATAGTTGCTATGTGCACAAGGTTTTAGTCTTTCAGAAGCAATAGAAAGCTAGGTGCTTTCCAAAGTAACATGTACTCTTTTTTTTCCTTTTTTTGTGAAAGAGATTTATTACCATCATGTCCTACGTGTGAAGAATATTGTTAAATTGGTTCAAGATCATTTTTGTTCCAAGAGGTGGATAACTAGAGTTGTTATTACTAAGTAAGCGGGTGCTCTCACTTCAGTTATGAACTTAGAAATATCTGATCTGTTATACATACTCAACAGTCTTTTGGTTTTGGGATTCTTATCTTGGATGACAAGTTACAATTGTCACATTAGAACACCACTCCTTGAGTGTAGCTTCATGCCTTCATAACATTTTATCGGAGTGTGGAAGCTATTATACTTCCTCAATCCATAACTTTTTCCAAGACAGTATTAAATTATAGATTTAGCTTGCTATGGACCCTCTATTTCCTATTTAGTTGCATCTGCGGTGCAATTTGAGTAGTTGAATAGGCATTCAAGTGAACATTTGGTTGAGCCTTTTTTGGGCAATTACTATCCCAAAGAGTGGGTAACATTTTTGTAAAATGTATACTACGATGGAAATCAATTACTGTATAGTGAGATAGGTGATTCCGAATTTACAGATGACTTTGTGTTTAACTTAGGTTTGCATACTTTCTTTGTTAAAGCAACAGTAATTAAGTTAGTTCATCCTATATGTTTGTCCTGTGCGTTGTGTATTTGGGAAGGCAGAATTGTAGGGAAGGGCTATGTTCATCACAGAAAGAGTAGAAGTTTGATGCTTGTCAATACTATTTGGTTATAGTTGGCAAATTTTTCTGGATACTTTTTTTTCTGTAGGTTTTACATGGTACTTGATGAAACATGTAATGGATACAGGAGTGGGATATAATTGTGCTCAGTGTAATTACTATATCTCATAAAACAGTTTTGAAGTCTTTTTCTTATCCTTTGCAGGTATTGATGGTCCGGTTAGAGTCTGATTTGGTCGAAATTTTGCTGGCAGCTTGCCATGGGAAGCTACATGGGATGTC</genome_strand>
        <mrna_strand>GTCAGAAGCAGCTGCTTTAGAAGGTTCGAAGAACTTCATGAAGAGCTTATGTGATAAATATGGAATTCCAACTGCAAAG...............................................................................................TATCAAGCATTTACAGACCCATCCGCTGCAAAAGAGTACATCAAACAGGAAGGTGCCCCAATTGTTGTTAAAGCGGATGGATTGGCTGCTGGTAAAGGAGTGATTGTTGCCATGACATTGGAGCAAGCATATGAGGCTGTTGATTCTATGCTTGTAGACAATGTTTTTGGTTCTGCTGGCTCTCGAGTCGTTGTAGAGGAATATTTGGAAGGAGAGGAAGCATCATTTTTTGCTCTAGTAGATGGTGAGCATGCCATACCTCTGGAATCTGCTCAAGACCACAAACGAGTTGGGGATGGCGATACAGGACCAAATACTGGTGGGATGGGGGCATATTCTCCAGCTCCTGTCTTGACAAAGGAACTGCAATCAATGGTCATGGAGTCTATAATTTTCCCTACAGTGAAGGGAATGGCCGAAGAAGGCTGCAAGTTTGTTGGGGTTCTGTATGCTGGGCTCATGATCGAGAAGAAATCTGGTTTGCCAAAGTTAATTGAGTACAATGTACGCTTTGGAGATCCAGAGTGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGATGGTCCGGNTAGAGTCTGATTTGGTC-AAATTTTGCTGGCAGCTTGCCATGGGAAGCTACATGGGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="40140" PGL_stop="44491"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40140" e_stop="40225"/>
            <exon e_start="42247" e_stop="42522"/>
            <exon e_start="44070" e_stop="44491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40140" e_stop="40225" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40226" i_stop="42246" i_length="2021"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42247" e_stop="42522" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42523" i_stop="44069" i_length="1547"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="44070" e_stop="44491" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40140" stop="40225"/>
              <exon start="42247" stop="42522"/>
              <exon start="44070" stop="44228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT163-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40140" stop="40225"/>
              <exon start="42247" stop="42522"/>
              <exon start="44070" stop="44213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT142-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42450" stop="42522"/>
              <exon start="44070" stop="44491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT163-F" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42469" stop="42522"/>
              <exon start="44070" stop="44491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT142-F" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAGGGAGATGAAAGGGGTCTCTAATGGGAGATCCATTCCCTTTCTTCTCTTCTTCCTTTCGTTTTTTCATCAATTCATCACAG : GCTTTTCAGACGATTCTTTAAATCCCAGAAATGGAACAAAAGTTGATAGTCATGCTGCATCCAGCAGTAACACTGGGTCAATTGTACTCATTGTATGTGTTGCCCTTGTGGCAGTAGTGCTTCTATCATTTTTCCTTTTCAAGTTTTGGCAAAAGAAGAAGCGTGAAGAGCAGTATGCTCGTCTGCTAAAGTTGTTTGAAGAAGATGATGAGCTTGAGCTTGAGCTGGGTCTTCGGGATTAAATTTGTGTCAAATGTTAACGACCAATGTACTGAG : ATGTAAGTAGTAACTTAAACCCAGATTCTTGATTCAATGATGACAATGAGTTGGATTGATTCCAGAATATTGACATAAATGAAGAGAAATCTTCATTTCACAATTTGTAGAAATATGTATCAGTGTTAGCAGAAACAAAACTATCATGCATTCTGTTCTTTGGGTACAGCGATCAATGGATAACAGATATTGCCAAACGTCACCCTCCCAAATGAGGATTGTAATTCATCTGTCACAATTTCACTCTGTAATAGTTGTTAGTAGGTGTTTGCAGCTTGTTAGATTGCTCTAAAAATTGAGGAATAATTTTAATCAAAGCTCAAATGAGCTAGACTGTACTTCAAGTTGTGCAAATTTGATTTTGTACCCTCTGATGTATCACTAGGCCTTAATATATTTTTGTTCTTTGTGTGTTAGATGTT</gDNA_template>
            <first_frame> K  Q  G  D  E  R  G  L  *  W  E  I  H  S  L  S  S  L  L  P  F  V  F  S  S  I  H  H  R :   L  F  R  R  F  F  K  S  Q  K  W  N  K  S  *  *  S  C  C  I  Q  Q  *  H  W  V  N  C  T  H  C  M  C  C  P  C  G  S  S  A  S  I  I  F  P  F  Q  V  L  A  K  E  E  A  *  R  A  V  C  S  S  A  K  V  V  *  R  R  *  *  A  *  A  *  A  G  S  S  G  L  N  L  C  Q  M  L  T  T  N  V  L  R :   C  K  *  *  L  K  P  R  F  L  I  Q  *  *  Q  *  V  G  L  I  P  E  Y  *  H  K  *  R  E  I  F  I  S  Q  F  V  E  I  C  I  S  V  S  R  N  K  T  I  M  H  S  V  L  W  V  Q  R  S  M  D  N  R  Y  C  Q  T  S  P  S  Q  M  R  I  V  I  H  L  S  Q  F  H  S  V  I  V  V  S  R  C  L  Q  L  V  R  L  L  *  K  L  R  N  N  F  N  Q  S  S  N  E  L  D  C  T  S  S  C  A  N  L  I  L  Y  P  L  M  Y  H  *  A  L  I  Y  F  C  S  L  C  V  R  C  </first_frame>
            <second_frame>  N  R  E  M  K  G  V  S  N  G  R  S  I  P  F  L  L  F  F  L  S  F  F  H  Q  F  I  T   : G  F  S  D  D  S  L  N  P  R  N  G  T  K  V  D  S  H  A  A  S  S  S  N  T  G  S  I  V  L  I  V  C  V  A  L  V  A  V  V  L  L  S  F  F  L  F  K  F  W  Q  K  K  K  R  E  E  Q  Y  A  R  L  L  K  L  F  E  E  D  D  E  L  E  L  E  L  G  L  R  D  *  I  C  V  K  C  *  R  P  M  Y  *   : D  V  S  S  N  L  N  P  D  S  *  F  N  D  D  N  E  L  D  *  F  Q  N  I  D  I  N  E  E  K  S  S  F  H  N  L  *  K  Y  V  S  V  L  A  E  T  K  L  S  C  I  L  F  F  G  Y  S  D  Q  W  I  T  D  I  A  K  R  H  P  P  K  *  G  L  *  F  I  C  H  N  F  T  L  *  *  L  L  V  G  V  C  S  L  L  D  C  S  K  N  *  G  I  I  L  I  K  A  Q  M  S  *  T  V  L  Q  V  V  Q  I  *  F  C  T  L  *  C  I  T  R  P  *  Y  I  F  V  L  C  V  L  D  V </second_frame>
            <third_frame>   T  G  R  *  K  G  S  L  M  G  D  P  F  P  F  F  S  S  S  F  R  F  F  I  N  S  S  Q  :  A  F  Q  T  I  L  *  I  P  E  M  E  Q  K  L  I  V  M  L  H  P  A  V  T  L  G  Q  L  Y  S  L  Y  V  L  P  L  W  Q  *  C  F  Y  H  F  S  F  S  S  F  G  K  R  R  S  V  K  S  S  M  L  V  C  *  S  C  L  K  K  M  M  S  L  S  L  S  W  V  F  G  I  K  F  V  S  N  V  N  D  Q  C  T  E  :  M  *  V  V  T  *  T  Q  I  L  D  S  M  M  T  M  S  W  I  D  S  R  I  L  T  *  M  K  R  N  L  H  F  T  I  C  R  N  M  Y  Q  C  *  Q  K  Q  N  Y  H  A  F  C  S  L  G  T  A  I  N  G  *  Q  I  L  P  N  V  T  L  P  N  E  D  C  N  S  S  V  T  I  S  L  C  N  S  C  *  *  V  F  A  A  C  *  I  A  L  K  I  E  E  *  F  *  S  K  L  K  *  A  R  L  Y  F  K  L  C  K  F  D  F  V  P  S  D  V  S  L  G  L  N  I  F  L  F  F  V  C  *  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0024O06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40141" stop="40225"/>
                    <exon start="42247" stop="42488"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NREMKGVSNGRSIPFLLFFLSFFHQFITGFSDDSLNPRNGTKVDSHAASSSNTGSIVLIVCVALVAVVLLSFFLFKFWQKKKREEQYARLLKLFEEDDELELELGLRD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0024O06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44152" stop="44361"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REIFISQFVEICISVSRNKTIMHSVLWVQRSMDNRYCQTSPSQMRIVIHLSQFHSVIVVSRCLQLVRLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="60205" PGL_stop="63213"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60205" e_stop="60500"/>
            <exon e_start="62838" e_stop="62944"/>
            <exon e_start="63157" e_stop="63213"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.938" acc_prob="0.799" e_score="0.990"/>
          <exon-intron don_prob="0.964" acc_prob="0.902" e_score="0.991"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="60205" e_stop="60500" e_length="296"/>
          </exon>
          <intron i_serial="1" don_prob="0.938" acc_prob="0.799">
            <gDNA_intron_boundary i_start="60501" i_stop="62837" i_length="2337"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="62838" e_stop="62944" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.902">
            <gDNA_intron_boundary i_start="62945" i_stop="63156" i_length="212"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="63157" e_stop="63213" e_length="57"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60205" stop="60500"/>
              <exon start="62838" stop="62944"/>
              <exon start="63157" stop="63213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACATTCGCAATGAAATTGGAAAAATTAGGGCAAAACAATTGTGAATTTCGTCAATCGATGTTGTGGAAGCTCTAAGGGGAGATGTGAATTTGTGATTTCTAATTTTCTTTATTTTCTTTTTCTTGGTGTAAAAGATCAAAGGAAAAAGTATTCGCATGAAGGGGCCGTTAGATCGATCAAAAGTAGTGCTGCGGCACTTGCCGCCGACAATTTCTCAGTCCATGCTTCTTGACCAAGTTGATTCCCGATTCGCTGGTCGATACAACTGGTTCTGTTTTCTACCCGGCAAGTCCAG : TCAGAAGCATCAAACTTATTCAAGAGCCTATATTGAATTTAAGAGGCCAGAAGATGTTATCGAGTTTGCGGAGTTCTTTGATGGACACGTTTTTGTAAACGAGAAAG : GCACTCAGTTCAAAACTATTGTTGAGTATGCTCCTTCACAGCGTGTTCCACAACACT</gDNA_template>
            <first_frame> N  I  R  N  E  I  G  K  I  R  A  K  Q  L  *  I  S  S  I  D  V  V  E  A  L  R  G  D  V  N  L  *  F  L  I  F  F  I  F  F  F  L  V  *  K  I  K  G  K  S  I  R  M  K  G  P  L  D  R  S  K  V  V  L  R  H  L  P  P  T  I  S  Q  S  M  L  L  D  Q  V  D  S  R  F  A  G  R  Y  N  W  F  C  F  L  P  G  K  S  S :   Q  K  H  Q  T  Y  S  R  A  Y  I  E  F  K  R  P  E  D  V  I  E  F  A  E  F  F  D  G  H  V  F  V  N  E  K   : G  T  Q  F  K  T  I  V  E  Y  A  P  S  Q  R  V  P  Q  H  </first_frame>
            <second_frame>  T  F  A  M  K  L  E  K  L  G  Q  N  N  C  E  F  R  Q  S  M  L  W  K  L  *  G  E  M  *  I  C  D  F  *  F  S  L  F  S  F  S  W  C  K  R  S  K  E  K  V  F  A  *  R  G  R  *  I  D  Q  K  *  C  C  G  T  C  R  R  Q  F  L  S  P  C  F  L  T  K  L  I  P  D  S  L  V  D  T  T  G  S  V  F  Y  P  A  S  P   : V  R  S  I  K  L  I  Q  E  P  I  L  N  L  R  G  Q  K  M  L  S  S  L  R  S  S  L  M  D  T  F  L  *  T  R  K  :  A  L  S  S  K  L  L  L  S  M  L  L  H  S  V  F  H  N  T </second_frame>
            <third_frame>   H  S  Q  *  N  W  K  N  *  G  K  T  I  V  N  F  V  N  R  C  C  G  S  S  K  G  R  C  E  F  V  I  S  N  F  L  Y  F  L  F  L  G  V  K  D  Q  R  K  K  Y  S  H  E  G  A  V  R  S  I  K  S  S  A  A  A  L  A  A  D  N  F  S  V  H  A  S  *  P  S  *  F  P  I  R  W  S  I  Q  L  V  L  F  S  T  R  Q  V  Q  :  S  E  A  S  N  L  F  K  S  L  Y  *  I  *  E  A  R  R  C  Y  R  V  C  G  V  L  *  W  T  R  F  C  K  R  E  R :   H  S  V  Q  N  Y  C  *  V  C  S  F  T  A  C  S  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0024O06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60337" stop="60500"/>
                    <exon start="62838" stop="62944"/>
                    <exon start="63157" stop="63212"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIKGKSIRMKGPLDRSKVVLRHLPPTISQSMLLDQVDSRFAGRYNWFCFLPGKSSQKHQTYSRAYIEFKRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPQH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="90937" PGL_stop="91804"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90937" e_stop="91180"/>
            <exon e_start="91617" e_stop="91804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90937" e_stop="91180" e_length="244"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91181" i_stop="91616" i_length="436"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="91617" e_stop="91804" e_length="188"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90937" stop="91180"/>
              <exon start="91617" stop="91804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTAAAGAAAAAATGGCATGTATGTCACTCAATATAGGAGCTGCTTCTGCTTTGAAGTTTGTAAGCAATTCCCAAAATCATCCAGTAAAGCTGTTCTCGGCTAAAGAACAACGTTGTTCCAACTTCAGTTCCAGCAATTGGGGTTGTTTCAGTCTTCGAGTTCGTCGGAGTTCTTGCCTTCGTTTTGATACACAAAAATCTTTCGCCGTTTTCAACAGCCTTCCAGTGGATAATAGCAACCCCA : AGGAAAGTGTGGTTGTCTTGGTAATTGGAGGAGGTGGGAGAGAGCATGCGCTTTGTCATGCTTTGAGGCGATCCCCTTCTTGTGACGCTATTTTCTGTGCACCGGGTAATGCTGGAATTTCCAGCTCAGGTGATGCGACTTGTATATCAGACCTTGATGTTTTAGATAGTTCAGCTGTGATTGCTTTC</gDNA_template>
            <first_frame> G  K  E  K  M  A  C  M  S  L  N  I  G  A  A  S  A  L  K  F  V  S  N  S  Q  N  H  P  V  K  L  F  S  A  K  E  Q  R  C  S  N  F  S  S  S  N  W  G  C  F  S  L  R  V  R  R  S  S  C  L  R  F  D  T  Q  K  S  F  A  V  F  N  S  L  P  V  D  N  S  N  P   : K  E  S  V  V  V  L  V  I  G  G  G  G  R  E  H  A  L  C  H  A  L  R  R  S  P  S  C  D  A  I  F  C  A  P  G  N  A  G  I  S  S  S  G  D  A  T  C  I  S  D  L  D  V  L  D  S  S  A  V  I  A  F </first_frame>
            <second_frame>  V  K  K  K  W  H  V  C  H  S  I  *  E  L  L  L  L  *  S  L  *  A  I  P  K  I  I  Q  *  S  C  S  R  L  K  N  N  V  V  P  T  S  V  P  A  I  G  V  V  S  V  F  E  F  V  G  V  L  A  F  V  L  I  H  K  N  L  S  P  F  S  T  A  F  Q  W  I  I  A  T  P  :  R  K  V  W  L  S  W  *  L  E  E  V  G  E  S  M  R  F  V  M  L  *  G  D  P  L  L  V  T  L  F  S  V  H  R  V  M  L  E  F  P  A  Q  V  M  R  L  V  Y  Q  T  L  M  F  *  I  V  Q  L  *  L  L   </second_frame>
            <third_frame>   *  R  K  N  G  M  Y  V  T  Q  Y  R  S  C  F  C  F  E  V  C  K  Q  F  P  K  S  S  S  K  A  V  L  G  *  R  T  T  L  F  Q  L  Q  F  Q  Q  L  G  L  F  Q  S  S  S  S  S  E  F  L  P  S  F  *  Y  T  K  I  F  R  R  F  Q  Q  P  S  S  G  *  *  Q  P  Q :   G  K  C  G  C  L  G  N  W  R  R  W  E  R  A  C  A  L  S  C  F  E  A  I  P  F  L  *  R  Y  F  L  C  T  G  *  C  W  N  F  Q  L  R  *  C  D  L  Y  I  R  P  *  C  F  R  *  F  S  C  D  C  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0024O06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90937" stop="91180"/>
                    <exon start="91617" stop="91804"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKEKMACMSLNIGAASALKFVSNSQNHPVKLFSAKEQRCSNFSSSNWGCFSLRVRRSSCLRFDTQKSFAVFNSLPVDNSNPKESVVVLVIGGGGREHALCHALRRSPSCDAIFCAPGNAGISSSGDATCISDLDVLDSSAVIAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="91912" PGL_stop="93973"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91912" e_stop="91990"/>
            <exon e_start="92086" e_stop="92616"/>
            <exon e_start="93897" e_stop="93973"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="0.975"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="0.987"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="91912" e_stop="91990" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91991" i_stop="92085" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="92086" e_stop="92616" e_length="531"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92617" i_stop="93896" i_length="1280"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="93897" e_stop="93973" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91912" stop="91990"/>
              <exon start="92086" stop="92616"/>
              <exon start="93897" stop="93973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g09830" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAGAAGCAGCTGCTTTAGAAGGTTCTAAGAACTTCATGAAGAGCTTATGTGATAAATATGGAATTCCAACTGCAAAG : TATCAAGCATTTACAGACCCATCCGCTGCAAAAGAGTACATCAAACAGGAAGGTGCCCCAATTGTTGTTAAAGCGGATGGATTGGCTGCTGGTAAAGGAGTGATTGTTGCCATGACATTAGAGCAAGCATATGAGGCTGTTGATTCTATGCTTGTAGACAATGTTTTTGGTTCTGCTGGCTCTCGAGTCATTGTAGAGGAATATTTGGAAGGAGAGGAAGCATCATTTTTTGCTCTAGTAGATGGTGAGCATGCCATACCTCTGGAATCTGCTCAAGACCACAAACGAGTTGGAGATGGAGATACAGGACCAAATACTGGTGGGATGGGGGCATATTCTCCAGCTCCTGTCTTGACAAAGGAACTGCAATCAATGGTCATGGAGTCTATCATTTTCCCTACAGTGAAGGGAATGGCCGAAGAAGGCTGCAAGTTTGTTGGGGTTCTGTATGCTGGGCTCATGATCGAGAAGAAATCTGGTTTGCCGAAGTTAATTGAGTACAATGTACGCTTTGGAGATCCAGAATGTCAG : GTATTGATGGTCCGGTTAGAGTCTGATTTGGTCGAAATTTTGCTGGCAGCTTGCCATGGGAAGCTACATGGGATGTC</gDNA_template>
            <first_frame> I  R  S  S  C  F  R  R  F  *  E  L  H  E  E  L  M  *  *  I  W  N  S  N  C  K   : V  S  S  I  Y  R  P  I  R  C  K  R  V  H  Q  T  G  R  C  P  N  C  C  *  S  G  W  I  G  C  W  *  R  S  D  C  C  H  D  I  R  A  S  I  *  G  C  *  F  Y  A  C  R  Q  C  F  W  F  C  W  L  S  S  H  C  R  G  I  F  G  R  R  G  S  I  I  F  C  S  S  R  W  *  A  C  H  T  S  G  I  C  S  R  P  Q  T  S  W  R  W  R  Y  R  T  K  Y  W  W  D  G  G  I  F  S  S  S  C  L  D  K  G  T  A  I  N  G  H  G  V  Y  H  F  P  Y  S  E  G  N  G  R  R  R  L  Q  V  C  W  G  S  V  C  W  A  H  D  R  E  E  I  W  F  A  E  V  N  *  V  Q  C  T  L  W  R  S  R  M  S   : G  I  D  G  P  V  R  V  *  F  G  R  N  F  A  G  S  L  P  W  E  A  T  W  D  V </first_frame>
            <second_frame>  S  E  A  A  A  L  E  G  S  K  N  F  M  K  S  L  C  D  K  Y  G  I  P  T  A  K  :  Y  Q  A  F  T  D  P  S  A  A  K  E  Y  I  K  Q  E  G  A  P  I  V  V  K  A  D  G  L  A  A  G  K  G  V  I  V  A  M  T  L  E  Q  A  Y  E  A  V  D  S  M  L  V  D  N  V  F  G  S  A  G  S  R  V  I  V  E  E  Y  L  E  G  E  E  A  S  F  F  A  L  V  D  G  E  H  A  I  P  L  E  S  A  Q  D  H  K  R  V  G  D  G  D  T  G  P  N  T  G  G  M  G  A  Y  S  P  A  P  V  L  T  K  E  L  Q  S  M  V  M  E  S  I  I  F  P  T  V  K  G  M  A  E  E  G  C  K  F  V  G  V  L  Y  A  G  L  M  I  E  K  K  S  G  L  P  K  L  I  E  Y  N  V  R  F  G  D  P  E  C  Q  :  V  L  M  V  R  L  E  S  D  L  V  E  I  L  L  A  A  C  H  G  K  L  H  G  M   </second_frame>
            <third_frame>   Q  K  Q  L  L  *  K  V  L  R  T  S  *  R  A  Y  V  I  N  M  E  F  Q  L  Q  S :   I  K  H  L  Q  T  H  P  L  Q  K  S  T  S  N  R  K  V  P  Q  L  L  L  K  R  M  D  W  L  L  V  K  E  *  L  L  P  *  H  *  S  K  H  M  R  L  L  I  L  C  L  *  T  M  F  L  V  L  L  A  L  E  S  L  *  R  N  I  W  K  E  R  K  H  H  F  L  L  *  *  M  V  S  M  P  Y  L  W  N  L  L  K  T  T  N  E  L  E  M  E  I  Q  D  Q  I  L  V  G  W  G  H  I  L  Q  L  L  S  *  Q  R  N  C  N  Q  W  S  W  S  L  S  F  S  L  Q  *  R  E  W  P  K  K  A  A  S  L  L  G  F  C  M  L  G  S  *  S  R  R  N  L  V  C  R  S  *  L  S  T  M  Y  A  L  E  I  Q  N  V  R :   Y  *  W  S  G  *  S  L  I  W  S  K  F  C  W  Q  L  A  M  G  S  Y  M  G  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0024O06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91913" stop="91990"/>
                    <exon start="92086" stop="92616"/>
                    <exon start="93897" stop="93971"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEAAALEGSKNFMKSLCDKYGIPTAKYQAFTDPSAAKEYIKQEGAPIVVKADGLAAGKGVIVAMTLEQAYEAVDSMLVDNVFGSAGSRVIVEEYLEGEEASFFALVDGEHAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTKELQSMVMESIIFPTVKGMAEEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMVRLESDLVEILLAACHGKLHGM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 95 chains have been computed
$ 
$ memory statistics:
$ 14936 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2133 bytes was the average size of a spliced alignment
$ 9280 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2320 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 97 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:17:20
-->
