<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-10-07 23:22:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0008L19-7AtJv/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0008L19-7AtJv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0008L19-7AtJv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="T0646" ref_strand="+" ref_description="T0646">
      <seq>aacaatgacaacattctctgcagcaacagtaagttcagcagccactataggcacaggcagaagctcttcccagaaagtaaccaaagtgaagtacattagtggtttgaattcatttgaagggctaaaggcaaacaaccatgttgcctcattaggcctacctatgtccactgaacaatcttttgcaaagattggtagctcattgaaaaccccatcatcacaagccaaaggtggagctttgtcctctacctgcaatgctgctcttgagattttcaggattgcttccattattcctggcttggatcttgttggagatgctgttggattcgtccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0008L19-7AtJv/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0008L19.1" temp_strand="-" temp_description="C01HBa0008L19.1  AC238499.2 htgs_phase:3 submitted_to_sgn_as:AC238499 Solanum lycopersicum strain Heinz 1706 clone hba-8l19, complete sequence.">
        <position start="11898" stop="10969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11598" g_stop="11267" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0008L19.1" gen_strand="-" ref_id="T0646" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0008L19.1" gen_strand="-"/>
        <rDNA rDNA_id="T0646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11598" e_stop="11267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGACAACATTCTCTGCAGCAACAGTAAGTTCAGCAGCCACTATAGGCACAGGCAGAAGCTCTTCCCAGAAAGTAACCAAAGTGAAGTACATTAGTGGTTTGAATTCATTTGAAGGGCTAAAGGCAAACAACCATGTTGCCTCATTAGGCCTCCCTATGTCCACTGAACAATCTTTTGCAAAGATTGTTAGCTCATTGAAAACCCCATCATCACAAGCCAAAGGTGGAGCTTTGTCCTCTACCTGCAATGCTGCTCTTGAGATTTTCAGGATTGCTTCCATTATTCCTGGCTTGGTTCTTGTTGGAGTTGCTGTTGGATTCGTCCTCC</genome_strand>
        <mrna_strand>AACAATGACAACATTCTCTGCAGCAACAGTAAGTTCAGCAGCCACTATAGGCACAGGCAGAAGCTCTTCCCAGAAAGTAACCAAAGTGAAGTACATTAGTGGTTTGAATTCATTTGAAGGGCTAAAGGCAAACAACCATGTTGCCTCATTAGGCCTACCTATGTCCACTGAACAATCTTTTGCAAAGATTGGTAGCTCATTGAAAACCCCATCATCACAAGCCAAAGGTGGAGCTTTGTCCTCTACCTGCAATGCTGCTCTTGAGATTTTCAGGATTGCTTCCATTATTCCTGGCTTGGATCTTGTTGGAGATGCTGTTGGATTCGTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0008L19-7AtJv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="T0620" ref_strand="+" ref_description="T0620">
      <seq>ctggcattgcagacagcacagatgaggtgaagaatttgcatgattctagtgtggacaaggctgcagaattggcagcaggatttacaaatgttttggttggactagctcctaatgacatggttcaaaggactgctcgaagactggatactcttcattcagagggtgttcatagactttcagagttgtgttgttttgctgcgactcaacttgtaatgcttgggaaatcaatcatttcaactgcaaataaagttggggaccaagatgcaaatgtggaaattctgaaaatggaatggccggaggattcaattgaaagagctaaggtaatccgatcaaaggcatgttcaatgactcgatgtgttgaaacagtttcttccagcttcattacagggatatctgaagtgtctgaagcgtatttagcagcagtgaagagtgtatctgctgattcacatgaggttccacagaaatcaatccaggagaaggccaatgcatatgctgagaatcttcgtgctgctcatagcacagccatgggcaaaattcaggacggccttcaatatttaccctatgtggtcatctcaacctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0008L19-7AtJv/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C01HBa0008L19.1" temp_strand="+" temp_description="C01HBa0008L19.1  AC238499.2 htgs_phase:3 submitted_to_sgn_as:AC238499 Solanum lycopersicum strain Heinz 1706 clone hba-8l19, complete sequence.">
        <position start="91203" stop="93528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91503" g_stop="91581" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91582" i_stop="92015" i_length="434">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92016" g_stop="92106" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="170" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92107" i_stop="92220" i_length="114">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.255" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92221" g_stop="92437" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="387" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92438" i_stop="93034" i_length="597">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93035" g_stop="93228" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="581" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0008L19.1" gen_strand="+" ref_id="T0620" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0008L19.1" gen_strand="+"/>
        <rDNA rDNA_id="T0620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91503" e_stop="91581"/>
          <exon e_start="92016" e_stop="92106"/>
          <exon e_start="92221" e_stop="92437"/>
          <exon e_start="93035" e_stop="93228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCATTGCAGACAGCACAGATGAGGTGAAGAATTTGCATGATTCTAGTGTGGACAAGGCTGCAGAATTGGCAGCAGGGTAAATATTTAACTTTAATATGCTTTACCTTTTAGTTAATTTTCTTCTACTTTAATATGTTCTGGAGAAATATATGGGAACAAAAGAAAATGCGATTGAGATGTTGACAGTTCATGAATCCAAGCACTAAAGGGCCTGTTTGGATGGACTTGTAAAAATTAACTGATAAGTCAGAAGTCACAATTACATGGTACCCTACTTTTGACTTATTTTTTAAAAAAATTTGGCCTAAAAGTGGATGCTTAAAATACTTTATAACCTTTCCAAACACCTCCAAAACTAAAAAACTACTTAAAAGTCAAAAGACCTAAAAGTAAGTTTATCCAAACGGGCACTAAATTCTTGTGCTTAGTAGAGTGATTATCTTTGAGTTTGTGTCTAGTTGGTAAAAACTGGGATACTGGTGTTAATTTCTGGATTTCATTGAATTGCAGATTTACAAATGTTTTGGTTGGACTAGCTCCTAATGACATGGTTCAAAGGACTGCTCGAAGACTGGATACTCTTCATTCAGAGGGTGTTCATGTATGTAAATTTTTAGTTAGTCTGCAACCTTTTTTTTAATCAAAGAAACTAGCTTCTTCTTCTTGGGAGTAATGAATTAACTTGACTTCTCACTGATTGTTCTTATGTACATAGAGACTTTCAGAGTTGTGTTGTTTTGCTGCGACTCAACTTGTAATGCTTGGGAAATCAATCATTTCAACTGCAAATAAAGTTGGGGACCAAGATGCAAATGTGGAAATTCTGAAAATGGAATGGCCGGAGGATTCAATTGAAAGAGCTAAGGTAATCCGATCAAAGGCATGTTCAATGACTCGATGTGTTGAAACAGTTTCTTCCAGCTTCATTACAGGTAGATCTTTGTCAAACATATACTTCTATGCATTTATGACTTTTATATTGTTTCTTTATTCCCTTCCTAGTAATTTCATCTGTAGTTCATTGTTTCTGCATCTAATATTGATAGATGACCAACCCATGTATGATCTCTAGTTTGAAAAGATCATCAAACGAAGATCAGAAGCACATGGGTAGGAATTCGAGGATTATTTACAAATAAAGTAGTTTTTATGATTTACGGTACTTTTTGTTTTGCATTTGTTACGGTAATTTAGTTTTTTTAGGTGTTCTCGTAAATATTTTGGAATATAACTATGAGAACTGCGCTGTTTAGTGATTGTTAATTCAACTGATGATGGGGTTTTCTGCTCACGAATTCAAAATTACTGGTCTGATAATGTTGAAATGAGGTGATTGAATTTGTAGAAAGGTTTGCCTTCCTTGAGACTGTTTTGTCTACCCGTGGTATGGATAACACGTTAAGGAACAGTTCAGCTGATTTTTCCTATGGAACATGTTTCCTCATGATATATCTTGTTCTTGGTGTAAAAAGGTTGGGTTAAGTGGATGACGTCTATCTCTCTTAATTAGCTTCGTTATGCCTTTGCAGGGATATCTGAAGTGTCTGAAGCGTATTTAGCAGCAGTGAAGAGTGTATCTGCTGATTCACATGAGGTTCCACAGAAATCAATCCAGGAGAAGGCCAATGCATATGCTGAGAATCTTCGTGCTGCTCATAGCACAGCCATGGGCAAAATTCAGGACGGCCTTCAATATTTACCCTATGTGGTCATCTCAACCTCA</genome_strand>
        <mrna_strand>CTGGCATTGCAGACAGCACAGATGAGGTGAAGAATTTGCATGATTCTAGTGTGGACAAGGCTGCAGAATTGGCAGCAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACAAATGTTTTGGTTGGACTAGCTCCTAATGACATGGTTCAAAGGACTGCTCGAAGACTGGATACTCTTCATTCAGAGGGTGTTCAT..................................................................................................................AGACTTTCAGAGTTGTGTTGTTTTGCTGCGACTCAACTTGTAATGCTTGGGAAATCAATCATTTCAACTGCAAATAAAGTTGGGGACCAAGATGCAAATGTGGAAATTCTGAAAATGGAATGGCCGGAGGATTCAATTGAAAGAGCTAAGGTAATCCGATCAAAGGCATGTTCAATGACTCGATGTGTTGAAACAGTTTCTTCCAGCTTCATTACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATCTGAAGTGTCTGAAGCGTATTTAGCAGCAGTGAAGAGTGTATCTGCTGATTCACATGAGGTTCCACAGAAATCAATCCAGGAGAAGGCCAATGCATATGCTGAGAATCTTCGTGCTGCTCATAGCACAGCCATGGGCAAAATTCAGGACGGCCTTCAATATTTACCCTATGTGGTCATCTCAACCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11598" PGL_stop="11267"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11598" e_stop="11267"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="11598" e_stop="11267" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11598" stop="11267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0646" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAATGACAACATTCTCTGCAGCAACAGTAAGTTCAGCAGCCACTATAGGCACAGGCAGAAGCTCTTCCCAGAAAGTAACCAAAGTGAAGTACATTAGTGGTTTGAATTCATTTGAAGGGCTAAAGGCAAACAACCATGTTGCCTCATTAGGCCTCCCTATGTCCACTGAACAATCTTTTGCAAAGATTGTTAGCTCATTGAAAACCCCATCATCACAAGCCAAAGGTGGAGCTTTGTCCTCTACCTGCAATGCTGCTCTTGAGATTTTCAGGATTGCTTCCATTATTCCTGGCTTGGTTCTTGTTGGAGTTGCTGTTGGATTCGTCCTCC</gDNA_template>
            <first_frame> N  N  D  N  I  L  C  S  N  S  K  F  S  S  H  Y  R  H  R  Q  K  L  F  P  E  S  N  Q  S  E  V  H  *  W  F  E  F  I  *  R  A  K  G  K  Q  P  C  C  L  I  R  P  P  Y  V  H  *  T  I  F  C  K  D  C  *  L  I  E  N  P  I  I  T  S  Q  R  W  S  F  V  L  Y  L  Q  C  C  S  *  D  F  Q  D  C  F  H  Y  S  W  L  G  S  C  W  S  C  C  W  I  R  P   </first_frame>
            <second_frame>  T  M  T  T  F  S  A  A  T  V  S  S  A  A  T  I  G  T  G  R  S  S  S  Q  K  V  T  K  V  K  Y  I  S  G  L  N  S  F  E  G  L  K  A  N  N  H  V  A  S  L  G  L  P  M  S  T  E  Q  S  F  A  K  I  V  S  S  L  K  T  P  S  S  Q  A  K  G  G  A  L  S  S  T  C  N  A  A  L  E  I  F  R  I  A  S  I  I  P  G  L  V  L  V  G  V  A  V  G  F  V  L  </second_frame>
            <third_frame>   Q  *  Q  H  S  L  Q  Q  Q  *  V  Q  Q  P  L  *  A  Q  A  E  A  L  P  R  K  *  P  K  *  S  T  L  V  V  *  I  H  L  K  G  *  R  Q  T  T  M  L  P  H  *  A  S  L  C  P  L  N  N  L  L  Q  R  L  L  A  H  *  K  P  H  H  H  K  P  K  V  E  L  C  P  L  P  A  M  L  L  L  R  F  S  G  L  L  P  L  F  L  A  W  F  L  L  E  L  L  L  D  S  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0008L19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11597" stop="11268"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMTTFSAATVSSAATIGTGRSSSQKVTKVKYISGLNSFEGLKANNHVASLGLPMSTEQSFAKIVSSLKTPSSQAKGGALSSTCNAALEIFRIASIIPGLVLVGVAVGFVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="91503" PGL_stop="93228"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91503" e_stop="91581"/>
            <exon e_start="92016" e_stop="92106"/>
            <exon e_start="92221" e_stop="92437"/>
            <exon e_start="93035" e_stop="93228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.255" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91503" e_stop="91581" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="91582" i_stop="92015" i_length="434"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92016" e_stop="92106" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.255">
            <gDNA_intron_boundary i_start="92107" i_stop="92220" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92221" e_stop="92437" e_length="217"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="92438" i_stop="93034" i_length="597"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93035" e_stop="93228" e_length="194"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91503" stop="91581"/>
              <exon start="92016" stop="92106"/>
              <exon start="92221" stop="92437"/>
              <exon start="93035" stop="93228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0620" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGGCATTGCAGACAGCACAGATGAGGTGAAGAATTTGCATGATTCTAGTGTGGACAAGGCTGCAGAATTGGCAGCAGG : ATTTACAAATGTTTTGGTTGGACTAGCTCCTAATGACATGGTTCAAAGGACTGCTCGAAGACTGGATACTCTTCATTCAGAGGGTGTTCAT : AGACTTTCAGAGTTGTGTTGTTTTGCTGCGACTCAACTTGTAATGCTTGGGAAATCAATCATTTCAACTGCAAATAAAGTTGGGGACCAAGATGCAAATGTGGAAATTCTGAAAATGGAATGGCCGGAGGATTCAATTGAAAGAGCTAAGGTAATCCGATCAAAGGCATGTTCAATGACTCGATGTGTTGAAACAGTTTCTTCCAGCTTCATTACAG : GGATATCTGAAGTGTCTGAAGCGTATTTAGCAGCAGTGAAGAGTGTATCTGCTGATTCACATGAGGTTCCACAGAAATCAATCCAGGAGAAGGCCAATGCATATGCTGAGAATCTTCGTGCTGCTCATAGCACAGCCATGGGCAAAATTCAGGACGGCCTTCAATATTTACCCTATGTGGTCATCTCAACCTCA</gDNA_template>
            <first_frame> L  A  L  Q  T  A  Q  M  R  *  R  I  C  M  I  L  V  W  T  R  L  Q  N  W  Q  Q   : D  L  Q  M  F  W  L  D  *  L  L  M  T  W  F  K  G  L  L  E  D  W  I  L  F  I  Q  R  V  F  I :   D  F  Q  S  C  V  V  L  L  R  L  N  L  *  C  L  G  N  Q  S  F  Q  L  Q  I  K  L  G  T  K  M  Q  M  W  K  F  *  K  W  N  G  R  R  I  Q  L  K  E  L  R  *  S  D  Q  R  H  V  Q  *  L  D  V  L  K  Q  F  L  P  A  S  L  Q  :  G  Y  L  K  C  L  K  R  I  *  Q  Q  *  R  V  Y  L  L  I  H  M  R  F  H  R  N  Q  S  R  R  R  P  M  H  M  L  R  I  F  V  L  L  I  A  Q  P  W  A  K  F  R  T  A  F  N  I  Y  P  M  W  S  S  Q  P   </first_frame>
            <second_frame>  W  H  C  R  Q  H  R  *  G  E  E  F  A  *  F  *  C  G  Q  G  C  R  I  G  S  R  :  I  Y  K  C  F  G  W  T  S  S  *  *  H  G  S  K  D  C  S  K  T  G  Y  S  S  F  R  G  C  S   : *  T  F  R  V  V  L  F  C  C  D  S  T  C  N  A  W  E  I  N  H  F  N  C  K  *  S  W  G  P  R  C  K  C  G  N  S  E  N  G  M  A  G  G  F  N  *  K  S  *  G  N  P  I  K  G  M  F  N  D  S  M  C  *  N  S  F  F  Q  L  H  Y  R :   D  I  *  S  V  *  S  V  F  S  S  S  E  E  C  I  C  *  F  T  *  G  S  T  E  I  N  P  G  E  G  Q  C  I  C  *  E  S  S  C  C  S  *  H  S  H  G  Q  N  S  G  R  P  S  I  F  T  L  C  G  H  L  N  L  </second_frame>
            <third_frame>   G  I  A  D  S  T  D  E  V  K  N  L  H  D  S  S  V  D  K  A  A  E  L  A  A  G :   F  T  N  V  L  V  G  L  A  P  N  D  M  V  Q  R  T  A  R  R  L  D  T  L  H  S  E  G  V  H  :  R  L  S  E  L  C  C  F  A  A  T  Q  L  V  M  L  G  K  S  I  I  S  T  A  N  K  V  G  D  Q  D  A  N  V  E  I  L  K  M  E  W  P  E  D  S  I  E  R  A  K  V  I  R  S  K  A  C  S  M  T  R  C  V  E  T  V  S  S  S  F  I  T   : G  I  S  E  V  S  E  A  Y  L  A  A  V  K  S  V  S  A  D  S  H  E  V  P  Q  K  S  I  Q  E  K  A  N  A  Y  A  E  N  L  R  A  A  H  S  T  A  M  G  K  I  Q  D  G  L  Q  Y  L  P  Y  V  V  I  S  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0008L19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91505" stop="91581"/>
                    <exon start="92016" stop="92106"/>
                    <exon start="92221" stop="92437"/>
                    <exon start="93035" stop="93228"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIADSTDEVKNLHDSSVDKAAELAAGFTNVLVGLAPNDMVQRTARRLDTLHSEGVHRLSELCCFAATQLVMLGKSIISTANKVGDQDANVEILKMEWPEDSIERAKVIRSKACSMTRCVETVSSSFITGISEVSEAYLAAVKSVSADSHEVPQKSIQEKANAYAENLRAAHSTAMGKIQDGLQYLPYVVISTS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 6 chains have been computed
$ 
$ memory statistics:
$ 4320 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2160 bytes was the average size of a spliced alignment
$ 6800 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3400 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 6 backtrace matrices have been allocated
$ 
$ date finished: 2009-10-07 23:22:45
-->
