<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 20:19:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372407" ref_strand="+" ref_description="SGN-E372407 [TUS-32-E22](-)">
      <seq>tggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagagtgtaatgtacctgcccagatcttatatagatgtttcctcatatcagcaattctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="2368" stop="573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2164" g_stop="2154" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="100" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1294" g_stop="865" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="530" r_length="430" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E372407" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2164" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAATTCTTTACCCCATGT</genome_strand>
        <mrna_strand>TGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAATTCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230295" ref_strand="+" ref_description="SGN-E230295 [cLEL-33-C15](-)">
      <seq>aagccttgataggattaatcaggatactgatcgttgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcaatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagagtgtaatgtacctgcccagatcttatatagatgtttcctcatatcagcaattctttaccccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="1532" stop="568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1232" g_stop="869" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="382"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E230295" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1232" e_stop="869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCTTGATAGGATTAATCAGGATACTGATCGT-GATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAATTCTTTACCCC</genome_strand>
        <mrna_strand>AAGCCTTGATAGGATTAATCAGGATACTGATCGTTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCAATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAATTCTTTACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538221" ref_strand="+" ref_description="SGN-E538221 [TUS-57-E7](-)">
      <seq>caaaaaagtttttgtaaaatgagatttcatattcagttataggtggaatatatggagtttgttttacctttagtaccgtaaggtgattagcttagcctttttcttttttcatggaataaataaagtatcttgcttagctaatttatgttttgcggcactgcagtatgggggcttttcttctcagtgctggcactaaaggtaagtcgaatagctgattcaaggctaaagtaactttctttgtcctatggttctagtttttgctcttaacttttgaagttgttatcaccttgaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagaagtgtaatgtacctgcccagaatcttatatagatgtttcctcatatcagcaattctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="2651" stop="573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2351" g_stop="1970" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1294" g_stop="873" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="806" r_length="424" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="807" polyA_stop="818"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E538221" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2351" e_stop="1970"/>
          <exon e_start="1294" e_stop="873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAG-AGTGTAATGTACCTGCCCAG-ATCTTATATAGATGTTTCCTCATATCAGCAATTCTTTA</genome_strand>
        <mrna_strand>CAAAAAAGTTTTTGTAAAATGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAAGTGTAATGTACCTGCCCAGAATCTTATATAGATGTTTCCTCATATCAGCAATTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292878" ref_strand="+" ref_description="SGN-E292878 [cLET-11-F13]">
      <seq>ggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagagtgtaatgtacctgcccagatcttatatagatgtttcctcatatcagcaattctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="2368" stop="573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2163" g_stop="2154" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="99" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1294" g_stop="873" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="521" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E292878" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2163" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAATTCTTTA</genome_strand>
        <mrna_strand>GGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAATTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372408" ref_strand="+" ref_description="SGN-E372408 [TUS-32-E22]">
      <seq>ggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagagtgtaatgtacctgcccagatcttatatagatgtttcctcatatcagcaattctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="2368" stop="573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2163" g_stop="2154" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="99" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1294" g_stop="873" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="521" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E372408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2163" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAATTCTTTA</genome_strand>
        <mrna_strand>GGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAATTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355030" ref_strand="+" ref_description="SGN-E355030 [cTOS-19-H14]">
      <seq>tcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtaaacacaacattcctggtggcaagaagaaaatggatggccaaatttttaacttgttgggaaagaatgtattggacttgcccagatctaatatagaggtttcctcttatcaccaatcctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="2300" stop="573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2000" g_stop="1970" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1294" g_stop="873" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="454" r_length="423" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="466"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E355030" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2000" e_stop="1970"/>
          <exon e_start="1294" e_stop="873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTAT-GCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAATTCTTTA</genome_strand>
        <mrna_strand>TCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAAACACAACATTCCTGGTGGCAAGAAGAAAATGGATGGCCAAATTTTTAACTTGTTGGGAAAGAATGTATTGGACTTGCCCAGATCTAATATAGAGGTTTCCTCTTATCACCAATCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744719" ref_strand="+" ref_description="SGN-E744719 [GI|15485609]">
      <seq>aattgccccaaaaaaacctatctttttcctcttcatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagagtgtaatgtacctgcccagatcttatatagatgtttcctcatatcagcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5767" stop="580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5467" g_stop="5290" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="298" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="416" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="509" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="555" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="628" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="663" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="752" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1294" g_stop="875" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="1172" r_length="420" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E744719" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1172</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5467" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAATTCTT</genome_strand>
        <mrna_strand>AATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747353" ref_strand="+" ref_description="SGN-E747353 [GI|47104609]">
      <seq>aaaaaaacctatctttttcctcttcatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagagtggtaatgtacctgcccagatcttatatagatgtttcctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5758" stop="580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5458" g_stop="5290" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="289" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="407" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="500" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="546" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="619" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="654" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="743" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1294" g_stop="878" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="1161" r_length="418" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E747353" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1160</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5458" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGT-GTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAATT</genome_strand>
        <mrna_strand>AAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353826" ref_strand="+" ref_description="SGN-E353826 [cTOS-10-B21]">
      <seq>tgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagagtgtaatgtacctgcccagatcttatatagatgtttcctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="3292" stop="580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2992" g_stop="2973" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="55" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="144" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1294" g_stop="878" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="561" r_length="417" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E353826" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2992" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAATT</genome_strand>
        <mrna_strand>TGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734654" ref_strand="+" ref_description="SGN-E734654 [LB13BA02]">
      <seq>gtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagagtgtaatgtacctgcccagatcttatatagatgtttcctcatatcagcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="4324" stop="580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4024" g_stop="3945" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="126" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="199" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="234" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="323" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1294" g_stop="881" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="737" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="738" polyA_stop="752"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E734654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4024" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCA</genome_strand>
        <mrna_strand>GTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732727" ref_strand="+" ref_description="SGN-E732727 [LB02DH04]">
      <seq>ggttaatgtcatagttgctcagcttctttatcttgatgctgctgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagagtgtaatgtacctgcccagatcttatatagatgtttcctcataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="4299" stop="580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3999" g_stop="3945" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="101" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="174" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="209" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="298" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1294" g_stop="888" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="705" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="706" polyA_stop="719"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E732727" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3999" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCAT</genome_strand>
        <mrna_strand>GGTTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGCTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355184" ref_strand="+" ref_description="SGN-E355184 [cTOS-18-N11]">
      <seq>cgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagagtgtaatgtacctgcccagatcttatatagatgtttcctcaaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="3322" stop="580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3022" g_stop="2973" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="85" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="174" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1294" g_stop="890" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="579" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="580" polyA_stop="594"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E355184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3022" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTC</genome_strand>
        <mrna_strand>CGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340120" ref_strand="+" ref_description="SGN-E340120 [cTOF-3-N16]">
      <seq>tcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagagtgtaatgtacctgcccagatcttatatagatgtttcctcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="3301" stop="580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3001" g_stop="2973" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="64" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="153" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1294" g_stop="890" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="558" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="572"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E340120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3001" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTC</genome_strand>
        <mrna_strand>TCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717346" ref_strand="+" ref_description="SGN-E717346 [FB19DG10]">
      <seq>caggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagagtgtaatgtacctgcccagatcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="3517" stop="599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3217" g_stop="3197" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="94" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="129" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="218" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1969" i_stop="1178" i_length="792">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1177" g_stop="895" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="501" r_length="283" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E717346" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3217" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1177" e_stop="895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTT</genome_strand>
        <mrna_strand>CAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228763" ref_strand="+" ref_description="SGN-E228763 [cLEL-29-F23](-)">
      <seq>aatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagagtgtaatgtacctgcccagatcttatataaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="1591" stop="599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1291" g_stop="900" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="409"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E228763" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1291" e_stop="900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAG</genome_strand>
        <mrna_strand>AATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229051" ref_strand="+" ref_description="SGN-E229051 [cLEL-29-F23](-)">
      <seq>gataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagagtgtaatgtacctgcccagatcttatataaaacccaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="1525" stop="599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1225" g_stop="900" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="343"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E229051" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1225" e_stop="900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAG</genome_strand>
        <mrna_strand>GATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353873" ref_strand="+" ref_description="SGN-E353873 [cTOS-10-E5]">
      <seq>cgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcaaggaaggttaattttctacctatcattttgtttctcattaatacactcgtctttagagattgtaattgattttactaagttgggtagacacaacattcctgctgccaggaagaaaatgtatgccaaaatttttacttgttgggaaagagtgtaatgtacctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="3322" stop="614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3022" g_stop="2973" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="85" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="174" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1294" g_stop="914" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="555" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E353873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3022" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCC</genome_strand>
        <mrna_strand>CGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339300" ref_strand="+" ref_description="SGN-E339300 [cTOF-4-N3]">
      <seq>gatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatacntgatcgtgattntttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatcgtagttgtattgcagggaaagttaattntctacctatcattttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5411" stop="747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5111" g_stop="5068" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="162" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="255" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="301" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="374" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="409" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="498" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1294" g_stop="1047" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="747" r_length="249" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E339300" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5111" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="1047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATAC-TGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGT</genome_strand>
        <mrna_strand>GATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACNTGATCGTGATTNTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAGGGAAAGTTAATTNTCTACCTATCATTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708972" ref_strand="+" ref_description="SGN-E708972 [FA42BB09]">
      <seq>cctatagtttaaacgtctttctttgaggaaagtaaaggctgtcgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatacggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcacctgctgaacaatcgtagttgtattgcaaggaaggttaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5615" stop="763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5316" g_stop="5290" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="147" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="265" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="358" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="404" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="477" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="512" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="601" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1294" g_stop="1063" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="833" r_length="232" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E708972" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5316" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="1063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTT</genome_strand>
        <mrna_strand>CCTATAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTCGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATACGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCACCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406592" ref_strand="+" ref_description="SGN-E406592 [PPI-4-G4]">
      <seq>cagagtgtgatcagccagctctttaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggccgttttcgataccatgcgacatattcgacctgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaaggaaagagatatagcttgccaaattcaaggataatgattcaccagcctcttggtggtgctcaaggtggtcaaactgatatagatatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaagagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgcagcagctgctgaacaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="4471" stop="792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4171" g_stop="4142" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="122" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="168" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="241" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="276" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="365" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1294" g_stop="1092" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="568" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E406592" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4171" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="1092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATC</genome_strand>
        <mrna_strand>CAGAGTGTGATCAGCCAGCTCTTT-AATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCCGTTTTCGATACCATGCGACATATTCGACCTGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GAAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTTGGTGGTGCTCAAGGTGGTCAAACTGATATAGATATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAAGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739265" ref_strand="+" ref_description="SGN-E739265 [LC16DA04]">
      <seq>ctctacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaaccacttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5721" stop="809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5421" g_stop="5290" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="252" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="370" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="463" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="509" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="582" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="617" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="706" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1294" g_stop="1109" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="892" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E739265" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5421" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="1109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCA</genome_strand>
        <mrna_strand>CTCTACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709092" ref_strand="+" ref_description="SGN-E709092 [FA42CF12]">
      <seq>cgctttaaattgccccaaaaaaacctatctttttcctcttcatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggaagctaaggagtacgggctaatcgatggtgtcatcatgaatccaatgaaagcccttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5774" stop="818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5474" g_stop="5290" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="305" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="423" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="516" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="562" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="635" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="670" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="759" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1969" i_stop="1178" i_length="792">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1177" g_stop="1118" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="819" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E709092" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5474" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1177" e_stop="1118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTAAATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAA</genome_strand>
        <mrna_strand>CGCTTTAAATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705437" ref_strand="+" ref_description="SGN-E705437 [FA27AF03]">
      <seq>caatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcangatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaatcgatggtgtcatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5710" stop="838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5410" g_stop="5290" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="241" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="359" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="452" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="498" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="571" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="606" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="695" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1294" g_stop="1138" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="852" r_length="157" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E705437" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5410" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="1138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGA</genome_strand>
        <mrna_strand>CAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCANGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727006" ref_strand="+" ref_description="SGN-E727006 [LA13BG12]">
      <seq>aaattgccccaaaaaaacctatctttttcctcttcatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctangtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcangatactgatcgtgattttttcatgagcgcaaaggaagctaaggagtacgggctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5768" stop="855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5468" g_stop="5290" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="299" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="417" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="510" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="556" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="629" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="664" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="753" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1294" g_stop="1155" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="893" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E727006" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5468" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="1155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAAT</genome_strand>
        <mrna_strand>AAATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTANGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCANGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720355" ref_strand="+" ref_description="SGN-E720355 [FC10CD01]">
      <seq>ggtttactccaacactcaactctttaaattgccccaaaaaaacctatctttttcctcttcatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcaaagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaaacaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgattttttcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5792" stop="885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5493" g_stop="5290" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="324" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="442" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="535" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="581" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="654" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="689" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="778" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1294" g_stop="1185" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="888" r_length="110" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E720355" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5493" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="1185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTACTCCAACACTCAACTCTTTAAATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAG</genome_strand>
        <mrna_strand>GGTTTACTCCAACACTCAACTCTTTAAATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAACAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706789" ref_strand="+" ref_description="SGN-E706789 [FA30DG05]">
      <seq>gctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaaaccttgataggattaatcangatactgatcgtgattttttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5705" stop="887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5405" g_stop="5290" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="236" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="354" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="447" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="493" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="566" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="601" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="690" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1294" g_stop="1187" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="798" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E706789" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5405" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="1187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATG</genome_strand>
        <mrna_strand>GCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAACCTTGATAGGATTAATCANGATACTGATCGTGATTTTTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700446" ref_strand="+" ref_description="SGN-E700446 [FA13AF01]">
      <seq>ccccctatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatcaggatactgatcgtgatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5714" stop="891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5414" g_stop="5290" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="245" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="363" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="456" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="502" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="575" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="610" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="699" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1294" g_stop="1191" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="803" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E700446" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5414" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="1191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTT</genome_strand>
        <mrna_strand>CCCCCTATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718180" ref_strand="+" ref_description="SGN-E718180 [FC03DG06]">
      <seq>aatcggccgaattcccatggggatccgatgatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatggttaccttgcctaccagactggtcaaagccttgataggattaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5735" stop="912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5433" g_stop="5290" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="174" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="294" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="412" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="505" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="551" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="624" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="659" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="748" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1294" g_stop="1212" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="831" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E718180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5433" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="1212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCA</genome_strand>
        <mrna_strand>ATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727178" ref_strand="+" ref_description="SGN-E727178 [LA13DG12]">
      <seq>cgcatctctttaaattgccccaaaaaaacctatctttttcctcttcatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctctaggtggtgctcaaggtggtcaaagtgatatagaaatacaggctaatgagatgttgcatcacaaagcaaatttgaatgggtacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5779" stop="951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5479" g_stop="5290" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="310" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="428" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="521" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="567" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="640" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="675" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="764" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1294" g_stop="1251" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="808" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E727178" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5479" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="1251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACTCTTTAAATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCT</genome_strand>
        <mrna_strand>CGCATCTCTTTAAATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGGTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590018" ref_strand="+" ref_description="SGN-E590018 [43604]">
      <seq>gctcattcttgcatagccacaacttcctctctctctaaattcaattcctcaatttttccatctgattcttgcaatctttctcccatatctctacaatttaaacgtctttccttgaggaatgggaaagtgaagaataggggaaatagcactgtcaaggctgtgtattctggagctgactgggatttagcaaaggcttcacgttcttcaggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgctgcccaaggtcaaggaccaccgccgatggtacaagagcgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggccgttttcgataccatgcgacatattcgacctgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaaggaaagagatatagcttgccaaattcaaggataatgattcaccagcctcttggtggtgctcaaggtggtcaaactgatatagatatacaggctaatgagatgtggcatcacaaaggcaaatttgaatggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5705" stop="954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5405" g_stop="5290" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5176" i_length="114">
            <donor d_prob="0.396" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="224" r_length="108" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="342" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="435" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="481" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="554" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="589" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="678" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.836" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1294" g_stop="1254" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="720" r_length="42" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E590018" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5405" e_stop="5290"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="1254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAA-GCAAATTTGAATGGTTA</genome_strand>
        <mrna_strand>GCTCATTCTTGCATAGCCACAACTTCCTCTCTCTCTAAATTCAATTCCTCAATTTTTCCATCTGATTCTTGCAATCTTTCTCCCATATCTCTACAATTTAAACGTCTTTCCTTGAG..................................................................................................................GAATGGGAAAGTGAAGAATAGGGGAAATAGCACTGTCAAGGCTGTGTATTCTGGAGCTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCAGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCTGCCCAAGGTCAAGGACCACCGCCGATGGTACAAGAGCGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCCGTTTTCGATACCATGCGACATATTCGACCTGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GAAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTTGGTGGTGCTCAAGGTGGTCAAACTGATATAGATATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTGGCATCACAAAGGCAAATTTGAATGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462332" ref_strand="+" ref_description="SGN-E462332 [cPRO-11-I10]">
      <seq>caaggaccaccgccgatggtacaagagcgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggccgttttcgataccatgcgacatattcgacctgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaaggaaagagatatagcttgccaaattcaaggataatgattcaccagcctcttggtggtgctcaaggtggtcaaactgatatagatatacaggctaatgagatgttgcatcacaaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="4504" stop="967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4204" g_stop="4142" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="156" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="202" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="275" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="310" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2058" g_stop="1970" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="399" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.836" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1294" g_stop="1267" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="427" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E462332" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4204" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1970"/>
          <exon e_start="1294" e_stop="1267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAGGTAATAACTCACTCTACTGTATGCCACAGTTTCGCATGCCAGAACCTCTGACCTTTGAAAAGCATATATCAGTCTGCACAAGGTGCTTATGGACGACTTTGTCCCACAAAGAATGCATAGAAATACTACCTTTGAATAATGCACTTGTGATGGAAACTTCCAAGTTCCAAGTAATTTTCCAGTTCTTTGTATGTTTAGAGGATGATTAATACAATAATATGATTATCAACCCCCAAACATAGTGGGTATGATTATCAACCCTTGGGATATTACCATCCAATCCCATAAAAAAGCTATCTTTTGTAACTGTTCATTTAGAGAATGCTTCTAGTTCAAAAGATATTCCTTAAATTGTTTGGGGATTGAGACAAAGTGGTAGTGGTATGTAGTTTAGACAATTTTGCGATGATTAAATTAATTTTCCAATATTCCAGCTAAGCTTATGTACTCTAGTTAGTCAGAGCTTATAAAATTTTGTTTCTCCTATGGAATAAATAACTCAAATGTAGAACTTCACTTCACTTCAATAGGTTAATAATTTGAAATAGTTATGTGAGATCATTTCTACTTTTCATGCTTAGAAGCTGAGGCATACATAAATGCATATGCCTGTTGTTGTATAACTTTAGTTTGCAACAAAAAAATACTTGGAGCTAAATCAACAATAATGTCCAGGCTAATGAGATGTTGCATCACAAAGCAA</genome_strand>
        <mrna_strand>CAAGGACCACCGCCGATGGTACAAGAGCGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCCGTTTTCGATACCATGCGACATATTCGACCTGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GAAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTTGGTGGTGCTCAAGGTGGTCAAACTGATATAGATATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGATGTTGCATCACAAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E608791" ref_strand="+" ref_description="SGN-E608791 [24786]">
      <seq>caaaaacctatcttttccttttcatctactccgaactccaaaaaaaaagaaatccaagaaaaaaaaatggctcattcttgcatagccacaacttcctctctctctaaattcaattcctcaatttttccgtctgattcttgcaatctttctcccatatctctacaatttaaacgtctttccttgaggaatgggaaagtgaagaataggggaaatagcactgtcaaggctgtgtattctggagctgactgggatttagcaaaggcttcacgttcttcaggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccgatggtacaagagcgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggccgttttcgataccatgcgacatattcgacctgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaaggaaagagatatagcttgccaaattcaaggataatgattcaccaggctcttggtggtgctcaaggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5709" stop="1691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5409" g_stop="5290" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="185" r_length="120" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5176" i_length="114">
            <donor d_prob="0.396" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="293" r_length="108" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="411" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="504" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="550" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="623" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="658" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="1991" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="726" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E608791" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5409" e_stop="5290"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="1991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGT</genome_strand>
        <mrna_strand>AATGGCTCATTCTTGCATAGCCACAACTTCCTCTCTCTCTAAATTCAATTCCTCAATTTTTCCGTCTGATTCTTGCAATCTTTCTCCCATATCTCTACAATTTAAACGTCTTTCCTTGAG..................................................................................................................GAATGGGAAAGTGAAGAATAGGGGAAATAGCACTGTCAAGGCTGTGTATTCTGGAGCTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCAGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCGATGGTACAAGAGCGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCCGTTTTCGATACCATGCGACATATTCGACCTGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GAAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGGCTCTTGGTGGTGCTCAAGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320754" ref_strand="+" ref_description="SGN-E320754 [cTOB-27-N6]">
      <seq>tacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcaccagcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5614" stop="1711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5314" g_stop="5290" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="145" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="263" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="356" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="402" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="475" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="510" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="2011" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="558" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E320754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5314" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="2011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTC</genome_strand>
        <mrna_strand>TACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340123" ref_strand="+" ref_description="SGN-E340123 [cTOF-3-P16]">
      <seq>aactctttaaattgccccaaaaaaacctatctttttcctcttcatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5776" stop="1717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5476" g_stop="5290" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="307" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="425" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="518" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="564" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="637" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="672" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="2017" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="714" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E340123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5476" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="2017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTTAAATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACC</genome_strand>
        <mrna_strand>AACTCTTTAAATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286946" ref_strand="+" ref_description="SGN-E286946 [cLES-6-K21]">
      <seq>aaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctagcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctgagtgctggcactaaagggaagagatatagcttgccaaattcaaggataatgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5724" stop="1719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5424" g_stop="5290" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="255" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="373" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="466" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="512" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="585" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="620" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="2019" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="660" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E286946" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5424" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="2019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCA</genome_strand>
        <mrna_strand>AAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTGAGTGCTGGCACTAAAG...............................................................................................GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567315" ref_strand="+" ref_description="SGN-E567315 [11422]">
      <seq>tttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggccgttttcgataccatgcgacatattcgacctgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaaggaaagagatatagcttgccaaattcaaggataatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="4340" stop="1722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4150" g_stop="4142" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="102" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="148" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="221" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="256" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2058" g_stop="2022" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="293" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E567315" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4150" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="2022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGAT</genome_strand>
        <mrna_strand>TTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCCGTTTTCGATACCATGCGACATATTCGACCTGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GAAAGAGATATAGCTTGCCAAATTCAAGGATAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622632" ref_strand="+" ref_description="SGN-E622632 [73001]">
      <seq>atttccaagaaaaaaaaaatggctcattcttgcatagccacaacttcctctctctctaaattcaattcctcaatttttccatctgattcttgcaatctttctcccatatctctacaatttaaacgtctttccttgaggaatgggaaagtgaagaataggggaaatagcactgtcaaggctgtgtattctggagctgactgggatttagcaaaggcttcacgttcttcaggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgctgcccaaggtcaaggaccaccgccgatggtacaagagcgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggccgttttcgataccatgcgacatattcgacctgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaaggaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5709" stop="1849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5409" g_stop="5290" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="137" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5176" i_length="114">
            <donor d_prob="0.396" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="245" r_length="108" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="363" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="456" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="502" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="575" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="610" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2058" g_stop="2053" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="616" r_length="6" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E622632" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5409" e_stop="5290"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
          <exon e_start="2058" e_stop="2053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGA</genome_strand>
        <mrna_strand>AATGGCTCATTCTTGCATAGCCACAACTTCCTCTCTCTCTAAATTCAATTCCTCAATTTTTCCATCTGATTCTTGCAATCTTTCTCCCATATCTCTACAATTTAAACGTCTTTCCTTGAG..................................................................................................................GAATGGGAAAGTGAAGAATAGGGGAAATAGCACTGTCAAGGCTGTGTATTCTGGAGCTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCAGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCTGCCCAAGGTCAAGGACCACCGCCGATGGTACAAGAGCGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCCGTTTTCGATACCATGCGACATATTCGACCTGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG...............................................................................................GAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409359" ref_strand="+" ref_description="SGN-E409359 [PPI-13-J10]">
      <seq>ttttcctcttcatctactcctaactccaaaaaaaaaaagaaatccaagaaaaaaaaaatggctcattcttgcatagccacaacttcctctctctctaaattcaattcctcaatttttccgtctgattcttgcaatctttctcccatatctctacaatttaaacgtctttccttgaggaatgggaaagtgaagaataggggaaatagcactgtcaaggctgtgtattctggagctgactgggatttagcaaaggcttcacgttcttcaggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccgatggtacaagagcgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgntgatcccacaaaagacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggccgttttcgataccatgcgacatattcgacctgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggcactaaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5744" stop="1850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5409" g_stop="5290" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="176" r_length="120" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5176" i_length="114">
            <donor d_prob="0.396" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="284" r_length="108" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="402" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="495" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="541" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="614" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2154" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="649" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E409359" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5409" e_stop="5290"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG</genome_strand>
        <mrna_strand>AATGGCTCATTCTTGCATAGCCACAACTTCCTCTCTCTCTAAATTCAATTCCTCAATTTTTCCGTCTGATTCTTGCAATCTTTCTCCCATATCTCTACAATTTAAACGTCTTTCCTTGAG..................................................................................................................GAATGGGAAAGTGAAGAATAGGGGAAATAGCACTGTCAAGGCTGTGTATTCTGGAGCTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCAGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCGATGGTACAAGAGCGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGNTGATCCCACAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCCGTTTTCGATACCATGCGACATATTCGACCTGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322551" ref_strand="+" ref_description="SGN-E322551 [cTOB-26-P1]">
      <seq>ccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaagtatgggggcttttcttctcagtgctggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5713" stop="1860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5413" g_stop="5290" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="244" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="362" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="455" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="501" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2973" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="574" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2188" g_stop="2160" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="603" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E322551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5413" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2973"/>
          <exon e_start="2188" e_stop="2160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTCTCCTTAATTCTGCTATTCCTCCTGTTTTATCACCCTTGCCCCTTTTAAGCCCTGTGCCAGTTCACTTGAAATCAATTTCCTGGGGACTTCCTTGCATGGAGAAGTATACAATGTCAAAGGAGCTAGTCTGATATAATTTTATTATGTTTGTTTGTATAATGTGTTATTTGATACTATTTCCATGTTGATGTTACATCGCTTTTACAATCCACCTATCTTTCACGCAGCTATTTCCTAACCTTCTTATAATTTAGATGGGTGAGTGGTGGAACAATTTACAAGTCTATTTCAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCA</genome_strand>
        <mrna_strand>CCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGGGCTTTTCTTCTCAGTGCTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269159" ref_strand="+" ref_description="SGN-E269159 [cLEI-16-I10]">
      <seq>ttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaaggtacctgattgattacttgtgtacctgtgtgtttcacttagaagatgatctttcatacattgttgttgtgttgcatatttgtgtgaaaatcacctttgcttaacccatgataggactacatagctttccagtgtaggttcttttatttgtttatctatttgattaactttccaattcctttcatttattgccattttttgcagcctcctttcatttaggtacttcacactcctctattttggtgcaaaagttcaccaacaaaatatttgaaaatgttgaaaatatttgaaaatgttgggattagatttgntggtccttcttctcttcctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="4312" stop="2341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4012" g_stop="3945" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="114" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3045" g_stop="2641" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="519" r_length="405" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E269159" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4012" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTC</genome_strand>
        <mrna_strand>TTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGNTGGTCCTTCTTCTCTTCCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333471" ref_strand="+" ref_description="SGN-E333471 [cTOD-20-I14]">
      <seq>cccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaaggtacctgattgattacttgtgtacctgtgtgtttcacttagaagatgatctttcatacattggtgttgtgttgcatatttgtgtgaaaatcacctttgcttaacccatgataggactacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5712" stop="2552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5412" g_stop="5290" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="243" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="361" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="454" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="500" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2852" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="694" r_length="194" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E333471" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5412" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACAT</genome_strand>
        <mrna_strand>CCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGGTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334291" ref_strand="+" ref_description="SGN-E334291 [cTOD-21-C2]">
      <seq>cccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtgttggactcgctgcaaggtacctgattgattacttgtgtacctgtgtgtttcacttagaagatgatctttcatacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5712" stop="2612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5412" g_stop="5290" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="243" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="361" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="454" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="500" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2912" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="634" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E334291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5412" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATT</genome_strand>
        <mrna_strand>CCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320006" ref_strand="+" ref_description="SGN-E320006 [cTOB-31-M1]">
      <seq>ccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggaaggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctncactgtctgtgttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5713" stop="2682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5413" g_stop="5290" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="244" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="362" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="455" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="501" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2982" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="565" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E320006" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5413" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACT</genome_strand>
        <mrna_strand>CCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAAGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTNCACTGTCTGTGTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266468" ref_strand="+" ref_description="SGN-E266468 [cLEI-3-P6]">
      <seq>aaactcaacccccccaatggctcattcttgcataggcacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaactgtctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5724" stop="2689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5424" g_stop="5290" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="255" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="373" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="466" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="512" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2989" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="569" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E266468" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5424" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTG</genome_strand>
        <mrna_strand>AAACTCAACCCCCCCAATGGCTCATTCTTGCATAGGCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293207" ref_strand="+" ref_description="SGN-E293207 [cLET-12-G10]">
      <seq>aaaacctatctttttcctcttcatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattcgacccgatgtctcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5755" stop="2696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5455" g_stop="5290" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="286" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="404" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="497" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="543" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="2996" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="593" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E293207" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5455" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="2996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACT</genome_strand>
        <mrna_strand>AAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266322" ref_strand="+" ref_description="SGN-E266322 [cLEI-3-P16]">
      <seq>aaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctgtttttgataccatgcgacatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5724" stop="2713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5424" g_stop="5290" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="255" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="373" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="466" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="512" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="3013" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="545" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E266322" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5424" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="3013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATTC</genome_strand>
        <mrna_strand>AAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGTTTTTGATACCATGCGACATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250786" ref_strand="+" ref_description="SGN-E250786 [cLEG-7-N24]">
      <seq>tcttcatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagcaggaatggctggttttgataccatgcgacatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5738" stop="2714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5438" g_stop="5290" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="269" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="387" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="480" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="526" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3045" g_stop="3014" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="558" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E250786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5438" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3197"/>
          <exon e_start="3045" e_stop="3014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAGGTACAACCAAGTGTTTCCGGTCAATCTCATTTTTTTGCTGTTTACCATAGTTTTTTCAGCTATTATCGTAGTGTTGAAGTGTTATAATCAGATTTTACGGTCTACTTAAATGCATGGTTTATCCATTGTAATGCACCTATTATTATTTCAGGAATGGCTGTTTTTGATACCATGCGACATATT</genome_strand>
        <mrna_strand>TCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG.......................................................................................................................................................GAATGGCTGGTTTTGATACCATGCGACATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313677" ref_strand="+" ref_description="SGN-E313677 [cTOA-12-J22]">
      <seq>ttcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtcaattctccaggagggtcagtaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5700" stop="2899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5400" g_stop="5290" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="231" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="349" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="442" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3199" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="486" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E313677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5400" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGC</genome_strand>
        <mrna_strand>TTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719669" ref_strand="+" ref_description="SGN-E719669 [FC08CB07]">
      <seq>gtttactccaacactcctctctttaaattgccccaaaaaaaacctatctttttcctcttcatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttcccccatatctctacagtttaaacgtctttctttaaggaaagtaaaggctgttggaaaagtgaaaagtacgggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttaccaaaggcttcacgttcttctggaatttggtctatcaaaaatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggaacaagaacaatttcaaagtgtgatcaaccacctctttcaatatagaataataccatgtggcgaatcatttgatgatgatatggctaatgccaaacttgctcaacttctttatcttgatgctgttaatcccaaaaaggacattgttatgtatgttaattctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5792" stop="2916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5492" g_stop="5290" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="324" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="442" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="535" r_length="93" r_score="0.860"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3216" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="562" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E719669" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5492" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACTCCAACACTCAACTCTTTAAATTGCCCC-AAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCTCCA</genome_strand>
        <mrna_strand>GTTTACTCCAACACTCCTCTCTTTAAATTGCCCCAAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCCCCCATATCTCTACAGTTTAAACGTCTTTCTTTAAG......................................................................................................GAAAGTAAAGGCTGTTGGAAAAGTGAAAAGTACGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTACCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGAACAAGAACAATTTCAAAGTGTGATCAACCACCTCTTTCAATAT........................................................................................................AGAATAATACCATGTGGCGAATCATTTGATGATGATATGGCTAATGCCAAACTTGCTCAACTTCTTTATCTTGATGCTGTTAATCCCAAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTTAATTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337941" ref_strand="+" ref_description="SGN-E337941 [cTOE-14-P12]">
      <seq>tggctcattcttgccttccacaacttcatctctctctaagtacaattccgcaatttccccatctgattattgccatatttgttcgatgtctctacgacttatacgacactctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcataccgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccaccaaggacattgttatgtatgtcaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5689" stop="2919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5407" g_stop="5290" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.856"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="0.76"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="237" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="355" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="449" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3219" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="473" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E337941" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5407" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATA-CGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATTCT</genome_strand>
        <mrna_strand>TGGCTCATTCTTGCCT-TCCACAACTTCATCTCTCTCTAAGTACAATTCCGCAATTTCCCCATCTGATTATTGCCATATTTGTTCGATGTCTCTACGACTTATACGACACTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACCGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278607" ref_strand="+" ref_description="SGN-E278607 [cLER-10-F2]">
      <seq>aaactcaacccccccaatggctcattcttgcatagccacatcttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgctgatcccacaaaggacattgttatgtatgtcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5724" stop="2921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5424" g_stop="5290" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="255" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="373" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="466" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3221" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="488" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E278607" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5424" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTCAATT</genome_strand>
        <mrna_strand>AAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACATCTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGCTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358759" ref_strand="+" ref_description="SGN-E358759 [cLHT-24-O1]">
      <seq>caacttcgtctctctctaaatacaattccgcaattttcccatctgattcttgcaatctttctcccatatctctacaatttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaagagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcgaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagagcgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatcccacaaaggacattgttatgtatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5686" stop="2925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5386" g_stop="5290" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="217" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="335" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="428" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3242" g_stop="3225" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="446" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E358759" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5386" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
          <exon e_start="3242" e_stop="3225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAGGTATATTTTCAAGAGCGCACTTGTTTTCATCAGATAGACTTTGGTTAAAATATTAGATGTTTCAATTTCGAGGAGATTCTGCATAAGGCAGTCCTTTGGTAGTATATATCATCTTTTGTATTTGTGAAAATTGATCCATCGCATTTGTTTTCTAAATATGATCTGTCTAGTGTCTATTGCTTAATTGCTTGAGCAACTTATGAATTTCTTTCCTCTTTTACACAATGGAATTTTCAGCATGTCATGTCATGTTAATTGACATGCCAGCATAACTTATATGCTTGAACTAGCCTACTGAGGCCGTAGTGCCCCAGTTGTGCATGAACCAAATGAGTGAAGAAAGGTAAGGCCTAGGTGTGAGACAGTGTGAAAATTCAACCTTTTCCTCTCTTTCTCTTGGTCTATTCTTACAGACTGATGTAGTTGGCAACCTACATACCTTTGACTATATGATGCCTTTTGATCAGCTTCCTATTTAATGAATAAAACATTGCTTTTTATCGAACAAGAAAGAATAAACAGATGCTGCTATGGTTTTATGTATGCAGCTCTGCTTCTCTTGTGACCTTTGCAGGAGTATCCCTTTCCAGTGTAGCGTTTAATTCTTAAACTGTTTTCCCTTTTCTTAAGTGCATCCTTTTATTTATATTTTACACAGTTTTCTTTTAATTCAACTGAACACCTCTTTAATTTACTACACAGGACATTGTTATGTATGTC</genome_strand>
        <mrna_strand>CAACTTCGTCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTCTTGCAATCTTTCTCCCATATCTCTACAATTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAGAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCGAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAGCGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGTTATGTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237363" ref_strand="-" ref_description="SGN-E237363 [cLEL-7-D16](-)">
      <seq>aaaaacctatctttttcctcttcatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaaataggatcatacgatgtggggagcagttgatgatgatatgctaatgtcatagttgctagctttttatctgatgctgttgatcccacaaaggacatgntatgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5756" stop="3629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5456" g_stop="5290" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="287" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="404" r_length="117" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3945" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="492" r_length="88" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E237363" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237363" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5456" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG</genome_strand>
        <mrna_strand>AAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAA-AT........................................................................................................AGGATCATACGATGTGG-GGAGCAGTTGATGATGATAT-GCTAATGTCATAGTTGCT-AGCTT-TTTATC-TGATGCTGTTGATCCCACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246703" ref_strand="+" ref_description="SGN-E246703 [cLEF-45-M22]">
      <seq>aactctttaaattgccccaaaaaaacctatcccttacctcttagggtacaccaaactcaaccctcccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagcttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcaaagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatgatatggctaatgtcatagttgctcagcttctttatcttgatgctgttgatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5776" stop="3650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5476" g_stop="5290" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="307" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="425" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3950" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="513" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E246703" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5476" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTTAAATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCA</genome_strand>
        <mrna_strand>AACTCTTTAAATTGCCCCAAAAAAACCTATCCCTTACCTCTTAGGGTACACCAAACTCAACCCTCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGCTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297928" ref_strand="+" ref_description="SGN-E297928 [cLET-38-B23]">
      <seq>aaaacctatctttttcctcttcatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcaattgatgatgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5755" stop="3699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5455" g_stop="5290" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="286" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="404" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="3999" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="443" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E297928" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5455" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="3999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATGATATG</genome_strand>
        <mrna_strand>AAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAATTGATGATGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236904" ref_strand="-" ref_description="SGN-E236904 [cLEL-7-D16](-)">
      <seq>aaaaacctatctttttcctcttcatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatataggatcatacgatgtggtggagcagttgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5756" stop="3704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5456" g_stop="5290" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="287" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="405" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4037" g_stop="4004" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="439" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E236904" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236904" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5456" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
          <exon e_start="4037" e_stop="4004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATATGTAAGAATTTGTTTCTTATGGCAGATACAGCATTCATCACAAAGTCACAATGTACTTGCTAAAATTTTAACTTCTGTATTATTATTGTTATTATCATCTTGTAGAGGATCATACGATGTGGTGGAGCAGTTGATGATG</genome_strand>
        <mrna_strand>AAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT........................................................................................................AGGATCATACGATGTGGTGGAGCAGTTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296758" ref_strand="+" ref_description="SGN-E296758 [cLET-26-E11]">
      <seq>tctacaccaaactcaacccccccaatggctgattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatgccgcccaaggtcaaggaccaccgccaatggtacaagaacgatttcagagtgtgatcagccagctctttcaatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5732" stop="3842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5432" g_stop="5290" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="263" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4142" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="381" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E296758" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5432" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT</genome_strand>
        <mrna_strand>TCTACACCAAACTCAACCCCCCCAATGGCTGATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296887" ref_strand="+" ref_description="SGN-E296887 [cLET-26-G3]">
      <seq>aaaacctatctttttcctcttcatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtgtattctggaagtgactgggatttagcaaaggctttacgttcttctggaatttggtctatcagagatgacgtgcaaataccatcatcaccttattttcctacatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5755" stop="3916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5455" g_stop="5290" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5068" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="286" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4259" g_stop="4216" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="330" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E296887" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5455" e_stop="5290"/>
          <exon e_start="5187" e_stop="5068"/>
          <exon e_start="4259" e_stop="4216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAGGTTCTTATTCTTTTTCTTCCCCCACCCCCCAAACCCAATCTTTAAGGTTCTTGGTTGAATTTCTTGGTAAATCTTGAAACTTTTTTGATGTTTTGTTAGCTAGAAATTTTCTAATTTCAGAGTGGGAAGGATTACTTTTCTTGGGTGTTATTGTTAGGGTTTCTTATGGTTGATGAGTGGATAAGGGGAGTAGGAATAGGAAATCTTGGGGTTAGGCCCAAATTTAGCTAATTAAGTTTAGACACTGCTAAGAAAATCTTGGGGTGTGCCTGTCAATCTCCTATTTAAGATGTTAATTTGACTTATCGACCTTGGAATGTATAGAGTTTGTTTCTTATAGACCTAGCAGTACAATATTAGTAGTAGAAAATGAAAATACTAAAGGGAGCAATGAGAAGTTAGTTTGATACCAAAAACATCATGTAGAGGCACAAAATTGAATAGTGAAACAAATTTTGAATTATTGGAAGTCATGAAAGTTGCTTGTCGTAAAGTATATAATAGGATTGTTAGTGGTGTCAAACATTTTGCGATACCCCGTTATGGCAAAGTTCATATAAATTGAGACAGAGATAGTATTTTCATTACTTTAATCTGTATTTTCATTTGTCTTCTTAAAAAGAATTGTTTAAGTTTCCTGAAAAGTAGATAGAAGGGTGTATTCTGAGGTCATCTTATGGGAGTAAACGATCCAGATTTATGGACTTGTGGAACGCATAAGTTGTAAGAAATCATTGTTGATGACTTAGTTGCTTTGTCATCTTATCTGTTATATCTTATGCTTTTTCCTTGTTACCGAGTTTTGCAGAGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATG</genome_strand>
        <mrna_strand>AAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAAGTGACTGGGATTTAGCAAAGGCTTTACGTTCTTCTGGAATTTGGTCTATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252077" ref_strand="+" ref_description="SGN-E252077 [cLEG-8-H6]">
      <seq>catagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctctctttgaggaaagaaaaggctgttgggaaagtgaaaagtaggggaaataacaccgccaaggctgtgtattctggaggtgactgggatttagcaaaggcttcacgttcttctggaatttggtctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5694" stop="4771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5394" g_stop="5290" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5071" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="222" r_length="117" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E252077" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5394" e_stop="5290"/>
          <exon e_start="5187" e_stop="5071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTAT</genome_strand>
        <mrna_strand>CATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTCTCTTTGAG......................................................................................................GAAAGAAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAACACCGCCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331918" ref_strand="+" ref_description="SGN-E331918 [cTOD-16-K3]">
      <seq>ctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaggaaagtaaaggctgttgggaaagtgaaaagtaggggaaatagcaccgtcaaggctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5704" stop="4830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5404" g_stop="5290" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5130" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="173" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E331918" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5404" e_stop="5290"/>
          <exon e_start="5187" e_stop="5130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTG</genome_strand>
        <mrna_strand>CTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG......................................................................................................GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207872" ref_strand="+" ref_description="SGN-E207872 [cLEC-34-M15]">
      <seq>aaacctatctttttcctcttcatctacaccaaactcaacccccccaatggctcattcttgcatagccacaacttcatctctctctaaatacaattccgcaattttcccatctgattattgcaatatttctcccatatctctacagtttaaacgtctttctttgaagaaaagtaaagctgttgggaaagtgaaaagtaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="5754" stop="4853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5454" g_stop="5290" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102">
            <donor d_prob="0.396" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5187" g_stop="5153" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="200" r_length="35" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E207872" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5454" e_stop="5290"/>
          <exon e_start="5187" e_stop="5153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAGGTACTGAAATGGGTTTGTGTCTTTTTACTTGTATATGTCGCTAATACTGAGTATTTCCCTGAAAAGTTTTGATTTTTTTTTGTGTTTTGGGTAATTACCCAGGAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGG</genome_strand>
        <mrna_strand>AAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAA......................................................................................................GAAAAGTAAAGCTGTTGGGAAAGTGAAAAGTAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216390" ref_strand="+" ref_description="SGN-E216390 [cLEL-13-M8](-)">
      <seq>gtatggtgtatcctgcctgccccgcaaatggtccatctgcactagctaagatacttcaagaagatggacctgctaaaggaccgccgttatcaaatgaatcatggctagcactgaggctacctcctgcaagtccttttgataacttcctcagagctgctagaggttagatcgatgcacgctatgcaactgcaccttaggctgtaaatgacatcacattgagctattgatcgactagtaggtttagctaacccttttgctttaattccaactctggagctgtcatgccccaattatcaagtgtttgtatttctaaggtgtatgtttgttgtagcattgttgtaaagtgcagtattactaagctgtatttaattctaacccatgtcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="8764" stop="7509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8464" g_stop="8415" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8414" i_stop="8143" i_length="272">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8142" g_stop="7809" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="384" r_length="334" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="385" polyA_stop="402"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E216390" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8464" e_stop="8415"/>
          <exon e_start="8142" e_stop="7809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGGTGTATCCTGCCTGCCCCGCAAATGGTCCATCTGCACTAGCTAAGGTGATCTTTCATTAACTGTCTTCTCACTAGATCTTCATGCGTGTTCTTATTTTGATTCCCTAGACAGAGAAAGTTTGAGCACAAATGTGATCTCAGATGATTTAATTTCTCTTTGTTTCCGGTGTAGAAGTTGTTTTTGTTCTTTCTTCGAGTTTTTAATTATGCCCCTTACTATGCCATCAATGTACGTAGTCTAGACATTTTGCTTACTTGCATTTGATTTTGATATCCATATGGTATGTTTTAACGTCTGCAACTTGCGTTTGCTGCAGATACTTCAAGAAGATGGACCTGCTAAAGGACCGCCGTTATCAAATGAATCATGGCTAGCACTGAGGCTACCTCCTGCAAGTCCTTTTGATAACTTCCTCAGAGCTGCTAGAGGTTAGATCGATGCACGCTATGCAACTGCACCTTAGGCTGTAAATGACATCACATTGAGCTATTGATCGACTAGTAGGTTTAGCTAACCCTTTTGCTTTAATTCCAACTCTGGAGCTGTCATGCCCCAATTATCAAGTGTTTGTATTTCTAAGGTGTATGTTTGTTGTAGCATTGTTGTAAAGTGCAGTATTACTAAGCTGTATTTAATTCTAACTTATGTTA</genome_strand>
        <mrna_strand>GTATGGTGTATCCTGCCTGCCCCGCAAATGGTCCATCTGCACTAGCTAAG................................................................................................................................................................................................................................................................................ATACTTCAAGAAGATGGACCTGCTAAAGGACCGCCGTTATCAAATGAATCATGGCTAGCACTGAGGCTACCTCCTGCAAGTCCTTTTGATAACTTCCTCAGAGCTGCTAGAGGTTAGATCGATGCACGCTATGCAACTGCACCTTAGGCTGTAAATGACATCACATTGAGCTATTGATCGACTAGTAGGTTTAGCTAACCCTTTTGCTTTAATTCCAACTCTGGAGCTGTCATGCCCCAATTATCAAGTGTTTGTATTTCTAAGGTGTATGTTTGTTGTAGCATTGTTGTAAAGTGCAGTATTACTAAGCTGTATTTAATTCTAACCCATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E617117" ref_strand="+" ref_description="SGN-E617117 [90591]">
      <seq>ctacctcctgcaagtccttttgataacttcctcagagctgctagaggttagatcgatgcacgcaatgcaactgcaccttagtttgtaaatgacatcacattgagctagtgatcgactagtaggtttagctaacccttttgctttaattccaactctggagctgtcatgccccaacttatctagtgtttgtatttctaaggtgtgtgtttgttgtagcattgttgtaaagtgcagtattactaagctgtatttaattctaacttatgttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="8376" stop="7509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8076" g_stop="7809" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="270" polyA_stop="283"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E617117" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8076" e_stop="7809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTCCTGCAAGTCCTTTTGATAACTTCCTCAGAGCTGCTAGAGGTTAGATCGATGCACGCTATGCAACTGCACCTTAGGCTGTAAATGACATCACATTGAGCTATTGATCGACTAGTAGGTTTAGCTAACCCTTTTGCTTTAATTCCAACTCTGGAGCTGTCATGCCCCAA-TTATCAAGTGTTTGTATTTCTAAGGTGTATGTTTGTTGTAGCATTGTTGTAAAGTGCAGTATTACTAAGCTGTATTTAATTCTAACTTATGTTA</genome_strand>
        <mrna_strand>CTACCTCCTGCAAGTCCTTTTGATAACTTCCTCAGAGCTGCTAGAGGTTAGATCGATGCACGCAATGCAACTGCACCTTAGTTTGTAAATGACATCACATTGAGCTAGTGATCGACTAGTAGGTTTAGCTAACCCTTTTGCTTTAATTCCAACTCTGGAGCTGTCATGCCCCAACTTATCTAGTGTTTGTATTTCTAAGGTGTGTGTTTGTTGTAGCATTGTTGTAAAGTGCAGTATTACTAAGCTGTATTTAATTCTAACTTATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553116" ref_strand="+" ref_description="SGN-E553116 [cTSB-1-G2]">
      <seq>ggaacaaaattctagagtgtcatgagataataaaggacatcttagttaaaagtttgtctagcattgcagaggttgaggcagatgacatattcaagcagctgtcggaggatttcacacctgatgatactttcattttttatcttaaatcaatggttggcatggatcacgtccaaataggatcacactccagagattcaccttcgtttgatgagagaatgttatccaagctcgtttgtagaggattacaaagtaagtgaatcatcaattgctgacatcaccagatttgttcccagaattcctatgtctccatctccttcgatgtctcatgttgtgagcattggacagcttcttgagtcggcactcgaggtggctggtcaagtagctggttcatctgtttcaacttcacctcttccatatgacaccatcactagtcaatgcgaatctcttggcacagactcaagaaagaaactctctaattggttagctcatgaaaatcattgttcaaaagcagctggtatggtgtatcctgcctgccccgcaaatggtccatctgcactagctaagatacttcaagaagatggacctgctaaaggaccgccgttatcaaatgaatcatggctagcactgaggctacctcctgcaagtccttttgataacttcctcagagctgctagaggttagatcgatgcacgctatgcaactgcaccttaggctgtaaatgacatcacattgagctattgatcgactagtaggtttagctaacccttttgctttaattccaactctggagctgtcatgccccaattatcaagtgtttgtatttctaaggggtatgtttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="11067" stop="7566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10767" g_stop="10697" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10696" i_stop="10535" i_length="162">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10534" g_stop="10394" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="212" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10393" i_stop="9725" i_length="669">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9724" g_stop="9581" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="357" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9580" i_stop="8622" i_length="959">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8621" g_stop="8415" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="564" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8414" i_stop="8143" i_length="272">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8142" g_stop="7866" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="841" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E553116" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10767" e_stop="10697"/>
          <exon e_start="10534" e_stop="10394"/>
          <exon e_start="9724" e_stop="9581"/>
          <exon e_start="8621" e_stop="8415"/>
          <exon e_start="8142" e_stop="7866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAAAATTCTAGAGTGTCATGAGATAATAAAGGACATCTTAGTTAAAAGTTTGTCTAGCATTGCAGAGGTACTAGTTGTCTTGAAAATTCAATTTATACTTCGTTATTTCTTAACTTAACTCCAGCTCTCCCCTGCCAGCAACAAAAAAAGGAAAATAATGGCAAACGGACTTTTTTTGTCCCTGGTTCTGCCTATTCGTGCTTACTTATTCTTTTGGGTTGTGCCTTAGGTTGAGGCAGATGACATATTCAAGCAGCTGTCGGAGGATTTCACACCTGATGATACTTTCATTTTTTATCTTAAATCAATGGTTGGCATGGATCACGTCCAAATAGGATCACACTCCAGAGATTCACCTTCGTTTGATGAGGTTTGCTGATTAAGCATTCAGATGATTCTCTGTGGCATGACATAGATGATGGTTTAATGTTCATCATCATTTAGTACTCCCACCCCTGGTCCAATTTATGTGGCACTTTACTTTTACTCCCTTCATTTCATTCTACTTGACCCATGTTGACTTGACGCTCCCCTTGAGAAAATATTTATCAGGGGTTTATCTTACTAAATTAACCTTATTAGTCATGCTTTGGAAATCTAAATTTGACTACTAGTATTTTATGTAGTTATTTAATGGTAAGGGTAATATTGGAAGAAAATGATAAATTTTTCTTTATTTGTTAAAATAGACAAGTAAAAAGAAAAAATCTATATTAGTTTTAAGGGCCAAGTAATTTGGATGGAGGGAGTAGCATGCCCTTAAAAGAGAATGCCACCTTTTCTTTTTACCCTTAGTGAGATTATTTATAGCCACATAAGTGTCTGGATTGTTTTGGACACGAGTTTCAGCAGACTTTTCTTTTTTTAACTGTGTCCAGTCAACAAGGCCCTATAAAATGGGATGGAGGAAGTACCAAGCAAATCTGTCCCTATCATTCCCTAGTTTAATGCCAGTGTCTGCTAACAGCTTCCTTGTTAATACATGCTCTCATATTGCTGAATCACAACATCTTTATATGTTTATTGTGTACTGGTGCAG-GAATGTTATCCAAGCTCGTTTGTAGAGGATTACAAAGTAAGTGAATCATCAATTGCTGACATCACCAGATTTGTTCCCAGAATTCCTATGTCTCCATCTCCTTCGATGTCTCATGTTGTGAGCATTGGACAGCTTCTTGAGTCGGTAATTTTCCCCACAACCCTTATATGTGTCCATCCACATGCATCTGTCTATTTGGCTATTTGCCTTGTGTGCCCCTAGAGATGAGCTTGCTTGTAGAAGGATTATATAGTCAAGGCAAAATAGTTCGTTATAGTTGTAAACAAGATCTAGGGAGGTGTGACTAATAGTTGATTTTCCTGTTTGATCCGACTATCGCCACATTATTAATGAGAGTGTAAATCCTTTTAAAGAAAAGGAAACATCTTTCATGTACTCAATTGCAGAGGTAACTCGCTATTTGCAACAATGTGTCACATACTACTTAAGTGGATGCTGCATGATATCACTTCTCTGCAAACAGATTTCACCTCTTATAGCAATCTTAAGTTGTGCATGTTTTGAATTGTTGCTCAATATATGAAATTTTGAAGAAAAAAAAATTGAATTTGTCGTTAAATGTATGAATTTTTGAAAATTTGTTGATTTCTCCCATATTTGATCCAATTTAAAAGCAAAGAAGTCTCTCATCTGAAAGTGTGTCAAGATGATGTGAGTTAAATCTGCAAAATGAGAAAATGTGAGTTGAATCTGAAACAAAATTGTTAAATTTCTGCTTAGTTTTGTACCATCGTTTCTATTTGCAAGCTGGTCCTGCATTCATGTATGTCTACAAAGTTAGCTTCATGTTTGCATCTCCTGTCAAGTTAAATAAATGGATTACATCTAATATTATTCTAGGTCCTTTGCCTGCTTTTTCTCCAAAATCAGTTTTCACAGTTAGGTTTATTAAAATTTGAAGCTAGACAGATAAAACTGCACCGATGATATGAACAAAGTACAAGTATTCATAGTTTTGTTTGGTCCAATGTATGAAAAGCAGACAAATCACTACCGTAATGATCTTTTACGGGATTTCAAAGAAACAAGTCAATCATAAGCGTTCTTCTTGTGTTGTTCCTTAAGTTGGTTTCTTTTCTCAGGCACTCGAGGTGGCTGGTCAAGTAGCTGGTTCATCTGTTTCAACTTCACCTCTTCCATATGACACCATCACTAGTCAATGCGAATCTCTTGGCACAGACTCAAGAAAGAAACTCTCTAATTGGTTAGCTCATGAAAATCATTGTTCAAAAGCAGCTGGTATGGTGTATCCTGCCTGCCCCGCAAATGGTCCATCTGCACTAGCTAAGGTGATCTTTCATTAACTGTCTTCTCACTAGATCTTCATGCGTGTTCTTATTTTGATTCCCTAGACAGAGAAAGTTTGAGCACAAATGTGATCTCAGATGATTTAATTTCTCTTTGTTTCCGGTGTAGAAGTTGTTTTTGTTCTTTCTTCGAGTTTTTAATTATGCCCCTTACTATGCCATCAATGTACGTAGTCTAGACATTTTGCTTACTTGCATTTGATTTTGATATCCATATGGTATGTTTTAACGTCTGCAACTTGCGTTTGCTGCAGATACTTCAAGAAGATGGACCTGCTAAAGGACCGCCGTTATCAAATGAATCATGGCTAGCACTGAGGCTACCTCCTGCAAGTCCTTTTGATAACTTCCTCAGAGCTGCTAGAGGTTAGATCGATGCACGCTATGCAACTGCACCTTAGGCTGTAAATGACATCACATTGAGCTATTGATCGACTAGTAGGTTTAGCTAACCCTTTTGCTTTAATTCCAACTCTGGAGCTGTCATGCCCCAATTATCAAGTGTTTGTATTTCTAAGGTGTATGTTTGTT</genome_strand>
        <mrna_strand>GGAACAAAATTCTAGAGTGTCATGAGATAATAAAGGACATCTTAGTTAAAAGTTTGTCTAGCATTGCAGAG..................................................................................................................................................................GTTGAGGCAGATGACATATTCAAGCAGCTGTCGGAGGATTTCACACCTGATGATACTTTCATTTTTTATCTTAAATCAATGGTTGGCATGGATCACGTCCAAATAGGATCACACTCCAGAGATTCACCTTCGTTTGATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGTTATCCAAGCTCGTTTGTAGAGGATTACAAAGTAAGTGAATCATCAATTGCTGACATCACCAGATTTGTTCCCAGAATTCCTATGTCTCCATCTCCTTCGATGTCTCATGTTGTGAGCATTGGACAGCTTCTTGAGTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCGAGGTGGCTGGTCAAGTAGCTGGTTCATCTGTTTCAACTTCACCTCTTCCATATGACACCATCACTAGTCAATGCGAATCTCTTGGCACAGACTCAAGAAAGAAACTCTCTAATTGGTTAGCTCATGAAAATCATTGTTCAAAAGCAGCTGGTATGGTGTATCCTGCCTGCCCCGCAAATGGTCCATCTGCACTAGCTAAG................................................................................................................................................................................................................................................................................ATACTTCAAGAAGATGGACCTGCTAAAGGACCGCCGTTATCAAATGAATCATGGCTAGCACTGAGGCTACCTCCTGCAAGTCCTTTTGATAACTTCCTCAGAGCTGCTAGAGGTTAGATCGATGCACGCTATGCAACTGCACCTTAGGCTGTAAATGACATCACATTGAGCTATTGATCGACTAGTAGGTTTAGCTAACCCTTTTGCTTTAATTCCAACTCTGGAGCTGTCATGCCCCAATTATCAAGTGTTTGTATTTCTAAGGGGTATGTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584584" ref_strand="+" ref_description="SGN-E584584 [10411]">
      <seq>gcgagagacaatgttgatgaggaacacaagcagggttgggccgtaaacaattcaccgaagtttcaaaaatttagttctatgattgattgtacagccgtatcagttggtagcttgaatgagggtgaaccatacattctgaagctaaacaaggatcaaattgtccagttgctgtcagccctctggctacaagccaacatgccagataatttacctgcaaatgttgaagctatagttcagtcattttgcttgacacttatttcttcacgtgttaagaaaaccaacaataacttactgatacgcttttgtcagcttcctctatcacttatgaagttatccctagaccctaataatggattgtttcctccagcataccagcgttcgcttcttgtgttatcagctgccatgttagcatttttggcgaagatttatcagataactgacctaagtattatacttgaaacattgcgggattttggtgttgatccttttctggggtatcaatgatggttatcaaggtgtacctgaaaggctcacgtagatgtgagaaaatatggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="12453" stop="10512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12153" g_stop="12045" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12044" i_stop="11947" i_length="98">
            <donor d_prob="0.089" d_score="0.84"/>
            <acceptor a_prob="0.555" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11946" g_stop="11776" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="273" r_length="166" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11775" i_stop="11595" i_length="181">
            <donor d_prob="0.231" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11594" g_stop="11516" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="352" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11515" i_stop="11436" i_length="80">
            <donor d_prob="0.851" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11435" g_stop="11311" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="477" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11310" i_stop="10889" i_length="422">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10888" g_stop="10812" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="557" r_length="80" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E584584" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12153" e_stop="12045"/>
          <exon e_start="11946" e_stop="11776"/>
          <exon e_start="11594" e_stop="11516"/>
          <exon e_start="11435" e_stop="11311"/>
          <exon e_start="10888" e_stop="10812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGAGACAATGTTGATGAGGAACACAAGCAGGGTTGGGCCGTTAAAAATTCACCGAAGTTTCAAAAATTTAGTTCTATGATTGATTGTACAGCTGGCTTGAATGAGGGTGTAAGAACATTACTGATTTAACTAATATACTTTCTTATTCTAGTTTTCCTTTCCTTCTCCTTTTTGCATTTTCACTAATTTCTGGCTCCACTGAAGGATGCTTTTTACTTGATCCAGGAACCATATATTCTGAAGCTAAACAAGGATCAAATTGTCCAGTTGCTGTCAGCCCTCTGGCTACAAGCCAACATGCCAGATAATGTACCTGCAAATGTTGAAGCTATAGTTCAGTCATTTTGCTTGACACTTATTTCTTCACGTGTCAAGGTGAGCATTCAGGTTATTCACATTCTGATGCTACCCCCCCCCCCCCCCCAAACGAAAAAAAAACTTAAAAAAAAAGTCTGAAAGTCTGAGTAAACACAATTCCAGGCAAGGGTTATGTGCTTCCTCTAAACATCTTTGTATCTAATCTATGCTCATGGTTGTCAATTTTCTGTTGTTGCAGAAAACCAACCATAACTTACTGATACACTTTTGTCAGCTTCCTTTATCACTTATGAAGTTATCCTTAGACCCTAATAATGGTAAGGAACTGTAATTTTTGCAGCTAATGAACTCATGGTTAAATGCTAAAAGTGAATTACAATTACCTTGTGTCTTTCAGGATTGTTTCCTCCAGCATACCAGCGTTCGCTTCTTGTGTTATCAGCTGCCATGTTAGCATTTTTGGCGAAGATTTATCAGATAACTGACCTAAGTGTTATACTTGAAACATTGCGGGATTTTGGTGTGAGTACTCCCTAGGATAAACTTTCATTGATTTCAGTTTAAAGTCATGGCTACATTTTCTGTTACGAAGAATTAATGCAAACAAGGCGGTTTTATCTTGCTTTTTTCACTAAAAAGAATCTTAATTGATAAGATATTTGCAACATTATGGAATAGTAAAGACTATTTTTCTGTTGTTGAAAAAGTTCTGATTGCTACATTATGGAAACAGAAGAATCTTCTGTTATTCTGTTGTTGGACAAGCTCTGATTCCAACATTATGGAAATGGACTATTTTTCTGTTGAACAAGTTATGATTGCAAAGGTTTTACTATTGTTAAACAAGTTAGAAACAACATTTCATCTCTACTACCACGTTTGTTTAATAAATTTGTTACGACATATTTTGTTTGTTATTGCTGTTAAAATCCCTCCATGTTCAGGTTGATCCTTTTCT-GGGTATCAATGATGGTTATCAA-GTGTACCTG-AAGCCTCACGTAGATGTGAGAAAATATGGTTC</genome_strand>
        <mrna_strand>GCGAGAGACAATGTTGATGAGGAACACAAGCAGGGTTGGGCCGTAAACAATTCACCGAAGTTTCAAAAATTTAGTTCTATGATTGATTGTACAGC-CGTATCAGT-TGG..................................................................................................TA-GC--TTGA-ATGA-GGGTGAACCATACATTCTGAAGCTAAACAAGGATCAAATTGTCCAGTTGCTGTCAGCCCTCTGGCTACAAGCCAACATGCCAGATAATTTACCTGCAAATGTTGAAGCTATAGTTCAGTCATTTTGCTTGACACTTATTTCTTCACGTGTTAAG.....................................................................................................................................................................................AAAACCAACAATAACTTACTGATACGCTTTTGTCAGCTTCCTCTATCACTTATGAAGTTATCCCTAGACCCTAATAATG................................................................................GATTGTTTCCTCCAGCATACCAGCGTTCGCTTCTTGTGTTATCAGCTGCCATGTTAGCATTTTTGGCGAAGATTTATCAGATAACTGACCTAAGTATTATACTTGAAACATTGCGGGATTTTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATCCTTTTCTGGGGTATCAATGATGGTTATCAAGGTGTACCTGAAAGGCTCACGTAGATGTGAGAAAATATGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233372" ref_strand="+" ref_description="SGN-E233372 [cLED-9-G14]">
      <seq>tggcttgaatgagggtgaaccatatattctgaagctaaacaaggatcaaattgtccagttgctgtcagccctctggctacaagccaacatgccagataatgtacctgcaaatgttgaagctatagttcagtcattttgcttgacacttatttcttcacgtgtcaagaaaaccaaccataacttactgatacacttttgtcagcttcctttatcacttatgaagttatccttagaccctaataatggattgtttcctccagcataccagcgttcgcttcttgtgttatcagctgccatgttagcatttttggcgaagatttatcagataactgacctaagtgttatacttgaaacattgcgggattttggtgttgatccttttctgggtatcaatgatggttatcaagtgtacctgaagcctcacgtagatgtgagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="12358" stop="10521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12058" g_stop="12043" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12042" i_stop="11926" i_length="117">
            <donor d_prob="0.939" d_score="0.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11925" g_stop="11776" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="166" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11775" i_stop="11595" i_length="181">
            <donor d_prob="0.231" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11594" g_stop="11516" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="245" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11515" i_stop="11436" i_length="80">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11435" g_stop="11311" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="370" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11310" i_stop="10889" i_length="422">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10888" g_stop="10821" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="438" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E233372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12058" e_stop="12043"/>
          <exon e_start="11925" e_stop="11776"/>
          <exon e_start="11594" e_stop="11516"/>
          <exon e_start="11435" e_stop="11311"/>
          <exon e_start="10888" e_stop="10821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTGAATGAGGGTGTAAGAACATTACTGATTTAACTAATATACTTTCTTATTCTAGTTTTCCTTTCCTTCTCCTTTTTGCATTTTCACTAATTTCTGGCTCCACTGAAGGATGCTTTTTACTTGATCCAGGAACCATATATTCTGAAGCTAAACAAGGATCAAATTGTCCAGTTGCTGTCAGCCCTCTGGCTACAAGCCAACATGCCAGATAATGTACCTGCAAATGTTGAAGCTATAGTTCAGTCATTTTGCTTGACACTTATTTCTTCACGTGTCAAGGTGAGCATTCAGGTTATTCACATTCTGATGCTACCCCCCCCCCCCCCCCAAACGAAAAAAAAACTTAAAAAAAAAGTCTGAAAGTCTGAGTAAACACAATTCCAGGCAAGGGTTATGTGCTTCCTCTAAACATCTTTGTATCTAATCTATGCTCATGGTTGTCAATTTTCTGTTGTTGCAGAAAACCAACCATAACTTACTGATACACTTTTGTCAGCTTCCTTTATCACTTATGAAGTTATCCTTAGACCCTAATAATGGTAAGGAACTGTAATTTTTGCAGCTAATGAACTCATGGTTAAATGCTAAAAGTGAATTACAATTACCTTGTGTCTTTCAGGATTGTTTCCTCCAGCATACCAGCGTTCGCTTCTTGTGTTATCAGCTGCCATGTTAGCATTTTTGGCGAAGATTTATCAGATAACTGACCTAAGTGTTATACTTGAAACATTGCGGGATTTTGGTGTGAGTACTCCCTAGGATAAACTTTCATTGATTTCAGTTTAAAGTCATGGCTACATTTTCTGTTACGAAGAATTAATGCAAACAAGGCGGTTTTATCTTGCTTTTTTCACTAAAAAGAATCTTAATTGATAAGATATTTGCAACATTATGGAATAGTAAAGACTATTTTTCTGTTGTTGAAAAAGTTCTGATTGCTACATTATGGAAACAGAAGAATCTTCTGTTATTCTGTTGTTGGACAAGCTCTGATTCCAACATTATGGAAATGGACTATTTTTCTGTTGAACAAGTTATGATTGCAAAGGTTTTACTATTGTTAAACAAGTTAGAAACAACATTTCATCTCTACTACCACGTTTGTTTAATAAATTTGTTACGACATATTTTGTTTGTTATTGCTGTTAAAATCCCTCCATGTTCAGGTTGATCCTTTTCTGGGTATCAATGATGGTTATCAAGTGTACCTGAAGCCTCACGTAGATGTGAGAAA</genome_strand>
        <mrna_strand>TGGCTTGAATGAGGGT.....................................................................................................................GAACCATATATTCTGAAGCTAAACAAGGATCAAATTGTCCAGTTGCTGTCAGCCCTCTGGCTACAAGCCAACATGCCAGATAATGTACCTGCAAATGTTGAAGCTATAGTTCAGTCATTTTGCTTGACACTTATTTCTTCACGTGTCAAG.....................................................................................................................................................................................AAAACCAACCATAACTTACTGATACACTTTTGTCAGCTTCCTTTATCACTTATGAAGTTATCCTTAGACCCTAATAATG................................................................................GATTGTTTCCTCCAGCATACCAGCGTTCGCTTCTTGTGTTATCAGCTGCCATGTTAGCATTTTTGGCGAAGATTTATCAGATAACTGACCTAAGTGTTATACTTGAAACATTGCGGGATTTTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATCCTTTTCTGGGTATCAATGATGGTTATCAAGTGTACCTGAAGCCTCACGTAGATGTGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E580076" ref_strand="+" ref_description="SGN-E580076 [5319]">
      <seq>gcgagagacaatgttgatgaggaacacaagcagggttgggccgtaaacaattcaccgaagtttcaaaaatttagttctatgattgattgtacagccgtatcagttggtagcttgaatgagggtgaaccatacattctgaagctaaacaaggatcaaattgtccagttgctgtcagccctctggctacaagccaacatgccagataatttacctgccaaatgttgaagctatagttcagtcattttgcttgacacttatttcttcacgtgttaagaaaaccaacaataacttactgatacgcttttgtcagcttcctctatcacttatgaagttatccctagaccctaataatggattgtttcctccagcataccagcgttcgcattcttgtgttatcagcgtgccatgttcagcatttttggcgaagatttatcagataactgaactaagtattatacttgaaacaattgcgggatttcggtgttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="12453" stop="11007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12153" g_stop="12045" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12044" i_stop="11947" i_length="98">
            <donor d_prob="0.089" d_score="0.84"/>
            <acceptor a_prob="0.555" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11946" g_stop="11776" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="274" r_length="167" r_score="0.901"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11775" i_stop="11595" i_length="181">
            <donor d_prob="0.231" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11594" g_stop="11516" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="353" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11515" i_stop="11436" i_length="80">
            <donor d_prob="0.851" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11435" g_stop="11304" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="489" r_length="136" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E580076" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12153" e_stop="12045"/>
          <exon e_start="11946" e_stop="11776"/>
          <exon e_start="11594" e_stop="11516"/>
          <exon e_start="11435" e_stop="11304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGAGACAATGTTGATGAGGAACACAAGCAGGGTTGGGCCGTTAAAAATTCACCGAAGTTTCAAAAATTTAGTTCTATGATTGATTGTACAGCTGGCTTGAATGAGGGTGTAAGAACATTACTGATTTAACTAATATACTTTCTTATTCTAGTTTTCCTTTCCTTCTCCTTTTTGCATTTTCACTAATTTCTGGCTCCACTGAAGGATGCTTTTTACTTGATCCAGGAACCATATATTCTGAAGCTAAACAAGGATCAAATTGTCCAGTTGCTGTCAGCCCTCTGGCTACAAGCCAACATGCCAGATAATGTACCTG-CAAATGTTGAAGCTATAGTTCAGTCATTTTGCTTGACACTTATTTCTTCACGTGTCAAGGTGAGCATTCAGGTTATTCACATTCTGATGCTACCCCCCCCCCCCCCCCAAACGAAAAAAAAACTTAAAAAAAAAGTCTGAAAGTCTGAGTAAACACAATTCCAGGCAAGGGTTATGTGCTTCCTCTAAACATCTTTGTATCTAATCTATGCTCATGGTTGTCAATTTTCTGTTGTTGCAGAAAACCAACCATAACTTACTGATACACTTTTGTCAGCTTCCTTTATCACTTATGAAGTTATCCTTAGACCCTAATAATGGTAAGGAACTGTAATTTTTGCAGCTAATGAACTCATGGTTAAATGCTAAAAGTGAATTACAATTACCTTGTGTCTTTCAGGATTGTTTCCTCCAGCATACCAGCGTTCGC-TTCTTGTGTTATCAGC-TGCCATGTT-AGCATTTTTGGCGAAGATTTATCAGATAACTGACCTAAGTGTTATACTTGAAAC-ATTGCGGGATTTTGGTGTGAGTA</genome_strand>
        <mrna_strand>GCGAGAGACAATGTTGATGAGGAACACAAGCAGGGTTGGGCCGTAAACAATTCACCGAAGTTTCAAAAATTTAGTTCTATGATTGATTGTACAGC-CGTATCAGT-TGG..................................................................................................TA-GC--TTGA-ATGA-GGGTGAACCATACATTCTGAAGCTAAACAAGGATCAAATTGTCCAGTTGCTGTCAGCCCTCTGGCTACAAGCCAACATGCCAGATAATTTACCTGCCAAATGTTGAAGCTATAGTTCAGTCATTTTGCTTGACACTTATTTCTTCACGTGTTAAG.....................................................................................................................................................................................AAAACCAACAATAACTTACTGATACGCTTTTGTCAGCTTCCTCTATCACTTATGAAGTTATCCCTAGACCCTAATAATG................................................................................GATTGTTTCCTCCAGCATACCAGCGTTCGCATTCTTGTGTTATCAGCGTGCCATGTTCAGCATTTTTGGCGAAGATTTATCAGATAACTGAACTAAGTATTATACTTGAAACAATTGCGGGATTTCGGTGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620001" ref_strand="+" ref_description="SGN-E620001 [70697]">
      <seq>tgatgcacgaccactgtttgatatgatggcaatgatgctggagaaagtnggccctctcttaaagtggttgccagggctacaatgggatccttgatcattcttgctcatatgatctcattagcatctgttgtttcacgatgtcagcaggtgttccctgaggagctgtttgttcagctactgaaagtgacattgcatccagacgttgaaatacggattggaggacaccacatcttttctgttctcctaatcccaagttctaaccatattagacatgacatagccaaccacacaaggagatggaatgcaaacggctcatctacatttgtgtcaattacttcgttacttgataagcttcgaaagggaaaggatggaattaagttgaaggaaggacatgttattcaagatgatttgaaggcgagagacaatgttgatgaggaacacaagcagggttgggccgtaaacaattcaccgaagttgtcaaaaatttagttctatgattgattgtacagccgtatcagttggtagcttgaatgagggtgaaccatacattctgaagctaaacaaggatcaaattgtccagttgctgtcagccctctggctacaagccaacatgccagataatttacctgcaaatgttgaaagctatagttcagtcattttgcttgacacttatttcttcacggtgttaagaaaaccaacaataacttactgatacgcttttgtcagcttcctctatcacttatgaagttatcgctagaccttaataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="13266" stop="11216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12966" g_stop="12822" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12821" i_stop="12421" i_length="401">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12420" g_stop="12045" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="522" r_length="375" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12044" i_stop="11947" i_length="98">
            <donor d_prob="0.089" d_score="0.80"/>
            <acceptor a_prob="0.555" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11946" g_stop="11776" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="690" r_length="168" r_score="0.889"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11775" i_stop="11595" i_length="181">
            <donor d_prob="0.231" d_score="0.94"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11594" g_stop="11516" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="769" r_length="79" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E620001" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12966" e_stop="12822"/>
          <exon e_start="12420" e_stop="12045"/>
          <exon e_start="11946" e_stop="11776"/>
          <exon e_start="11594" e_stop="11516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCACGACCACTGTTTGATATGATGGCAATGATGCTGGAG-AAGTT-GCCCTCTCTTAAAGTGGTTGCCAGGGCTACAATGGGATCATTGATCATTCTTGCTCATATGATTTCATTAGCATCTGTTGTTTCACGACGTCAGCAGGTAAGTGATTGCCTGCTTTGTCATCCATGTTGGGTCTTCTTACATTGCCAGCTAGCTTGGTTGCCGTTATATATTTCCTCCTTTTAACTTTAGGCTTCTCGCACGTTTATTGTCTGTTTTGAGTAATCATGTCTGAGGTTAATGAATAAAATCTTCACAGAATGTTGGATGTGAATAAACTCTTCACAGAATGTTGGATGTGATTTGTTCTTTCTATGTATTCTAAATGAAATGGATATATTACCTGTTGTACATGATTTCTTATTTTTTTATGGTAACTGGCAAGTAATATCAATGGGAACAATGAAATTTTCTTGTTGAGTTGATTTATGTGTTCATCTTCTATATCATTTGCGTTTCAACAAGATTATTTTATATTTCATTATCTTAAATCCTTTTAGGTGTTCCCTGAGGAGCTGTTTGTTCAGCTACTGAAAGTGACATTGCATCCAGACGTTGAAATACGAATTGGAGGACACCACATCTTTTCTGTTCTCCTAATCCCAAGTTCTAATCATATTAGACATGACATAGCCAACCACACAAGGAGATGGAATGCAAACGGCTCATCGACATTTGTGTCAATTACTTCTTTACTTGATAAACTTCGAAAGGGAAAGGATGGAATTAAGTTGAAGGAAGGACAAGTTATTCAAGATGACTTGAAGGCGAGAGACAATGTTGATGAGGAACACAAGCAGGGTTGGGCCGTTAAAAATTCACCGAAGTT-TCAAAAATTTAGTTCTATGATTGATTGTACAGCTGGCTTGAATGAGGGTGTAAGAACATTACTGATTTAACTAATATACTTTCTTATTCTAGTTTTCCTTTCCTTCTCCTTTTTGCATTTTCACTAATTTCTGGCTCCACTGAAGGATGCTTTTTACTTGATCCAGGAACCATATATTCTGAAGCTAAACAAGGATCAAATTGTCCAGTTGCTGTCAGCCCTCTGGCTACAAGCCAACATGCCAGATAATGTACCTGCAAATGTTG-AAGCTATAGTTCAGTCATTTTGCTTGACACTTATTTCTTCAC-GTGTCAAGGTGAGCATTCAGGTTATTCACATTCTGATGCTACCCCCCCCCCCCCCCCAAACGAAAAAAAAACTTAAAAAAAAAGTCTGAAAGTCTGAGTAAACACAATTCCAGGCAAGGGTTATGTGCTTCCTCTAAACATCTTTGTATCTAATCTATGCTCATGGTTGTCAATTTTCTGTTGTTGCAGAAAACCAACCATAACTTACTGATACACTTTTGTCAGCTTCCTTTATCACTTATGAAGTTATCCTTAGACCCTAATAATG</genome_strand>
        <mrna_strand>TGATGCACGACCACTGTTTGATATGATGGCAATGATGCTGGAGAAAGTNGGCCCTCTCTTAAAGTGGTTGCCAGGGCTACAATGGGATCCTTGATCATTCTTGCTCATATGATCTCATTAGCATCTGTTGTTTCACGATGTCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCCTGAGGAGCTGTTTGTTCAGCTACTGAAAGTGACATTGCATCCAGACGTTGAAATACGGATTGGAGGACACCACATCTTTTCTGTTCTCCTAATCCCAAGTTCTAACCATATTAGACATGACATAGCCAACCACACAAGGAGATGGAATGCAAACGGCTCATCTACATTTGTGTCAATTACTTCGTTACTTGATAAGCTTCGAAAGGGAAAGGATGGAATTAAGTTGAAGGAAGGACATGTTATTCAAGATGATTTGAAGGCGAGAGACAATGTTGATGAGGAACACAAGCAGGGTTGGGCCGTAAACAATTCACCGAAGTTGTCAAAAATTTAGTTCTATGATTGATTGTACAGC-CGTATCAGT-TGG..................................................................................................TA-GC--TTGA-ATGA-GGGTGAACCATACATTCTGAAGCTAAACAAGGATCAAATTGTCCAGTTGCTGTCAGCCCTCTGGCTACAAGCCAACATGCCAGATAATTTACCTGCAAATGTTGAAAGCTATAGTTCAGTCATTTTGCTTGACACTTATTTCTTCACGGTGTTAAG.....................................................................................................................................................................................AAAACCAACAATAACTTACTGATACGCTTTTGTCAGCTTCCTCTATCACTTATGAAGTTATCGCTAGACCTTAATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327689" ref_strand="+" ref_description="SGN-E327689 [cTOC-20-E17]">
      <seq>ttcaagcaactgtcgaatcagttcaagagcaagagcttaacttcaatcttgcacttcaaacatctatccaagaatgcttcctagaaactgctaaagggattgttgatgcacgaccactgtttgatatgatggcaatgatgctggagaagttgccctctcttaaagtggttgccagggctacaatgggatcattgatcattcttgctcatatgatttcattagcatctgttgtttcacgacgtcagcaggtgttccctgaggagctgtttgttcagctactgaaagtgacattgcatccagacgttgaaatacgaattggaggacaccacatcttttctgttctcctaatcccaagttctaatcatattagacatgacatagccaaccacacaaggagatggaatgcaaacggctcatcgacatttgtgtcaattacttctttacttgataaacttcgaaagggaaaggatggaattaagttgaaggaaggacaagttattcaagatgacttgaaggcgagagacaatgttgatgaggaacacaagcagggttgggccgttaaaaattcaccgaagtttcaaaatttagttctatgattgattgtacagctggcttgaatgaggntgaaccatatattctgaaagctaacagggatcaattgtccagttgctgtcagccctctggctancagcaacatgccagaatatgtacctgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="13436" stop="11532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13136" g_stop="13039" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13038" i_stop="12972" i_length="67">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12971" g_stop="12822" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="248" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12821" i_stop="12421" i_length="401">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12420" g_stop="12043" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="625" r_length="377" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12042" i_stop="11926" i_length="117">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.734" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11925" g_stop="11832" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="717" r_length="92" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E327689" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13136" e_stop="13039"/>
          <exon e_start="12971" e_stop="12822"/>
          <exon e_start="12420" e_stop="12043"/>
          <exon e_start="11925" e_stop="11832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGCAACTGTCGAATCAGTTCAAGAGCAAGAGCTTAACTTCAATCTTGCACTTCAAACATCTATCCAAGAATGCTTCCTAGAAACTGCTAAAGGGGTAATTTATGTTAGTTAATGAGTGGTTTTGATCGGCTATTTCTGATATTAACAGGTTTTTCCCGTAGATTGTTGATGCACGACCACTGTTTGATATGATGGCAATGATGCTGGAGAAGTTGCCCTCTCTTAAAGTGGTTGCCAGGGCTACAATGGGATCATTGATCATTCTTGCTCATATGATTTCATTAGCATCTGTTGTTTCACGACGTCAGCAGGTAAGTGATTGCCTGCTTTGTCATCCATGTTGGGTCTTCTTACATTGCCAGCTAGCTTGGTTGCCGTTATATATTTCCTCCTTTTAACTTTAGGCTTCTCGCACGTTTATTGTCTGTTTTGAGTAATCATGTCTGAGGTTAATGAATAAAATCTTCACAGAATGTTGGATGTGAATAAACTCTTCACAGAATGTTGGATGTGATTTGTTCTTTCTATGTATTCTAAATGAAATGGATATATTACCTGTTGTACATGATTTCTTATTTTTTTATGGTAACTGGCAAGTAATATCAATGGGAACAATGAAATTTTCTTGTTGAGTTGATTTATGTGTTCATCTTCTATATCATTTGCGTTTCAACAAGATTATTTTATATTTCATTATCTTAAATCCTTTTAGGTGTTCCCTGAGGAGCTGTTTGTTCAGCTACTGAAAGTGACATTGCATCCAGACGTTGAAATACGAATTGGAGGACACCACATCTTTTCTGTTCTCCTAATCCCAAGTTCTAATCATATTAGACATGACATAGCCAACCACACAAGGAGATGGAATGCAAACGGCTCATCGACATTTGTGTCAATTACTTCTTTACTTGATAAACTTCGAAAGGGAAAGGATGGAATTAAGTTGAAGGAAGGACAAGTTATTCAAGATGACTTGAAGGCGAGAGACAATGTTGATGAGGAACACAAGCAGGGTTGGGCCGTTAAAAATTCACCGAAGTTTCAAAAATTTAGTTCTATGATTGATTGTACAGCTGGCTTGAATGAGGGTGTAAGAACATTACTGATTTAACTAATATACTTTCTTATTCTAGTTTTCCTTTCCTTCTCCTTTTTGCATTTTCACTAATTTCTGGCTCCACTGAAGGATGCTTTTTACTTGATCCAGGAACCATATATTCTGAAGCTAAACAAGGATCAAATTGTCCAGTTGCTGTCAGCCCTCTGGCTACAAGCCAACATGCCAGATAATGTACCTGCAA</genome_strand>
        <mrna_strand>TTCAAGCAACTGTCGAATCAGTTCAAGAGCAAGAGCTTAACTTCAATCTTGCACTTCAAACATCTATCCAAGAATGCTTCCTAGAAACTGCTAAAGGG...................................................................ATTGTTGATGCACGACCACTGTTTGATATGATGGCAATGATGCTGGAGAAGTTGCCCTCTCTTAAAGTGGTTGCCAGGGCTACAATGGGATCATTGATCATTCTTGCTCATATGATTTCATTAGCATCTGTTGTTTCACGACGTCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCCTGAGGAGCTGTTTGTTCAGCTACTGAAAGTGACATTGCATCCAGACGTTGAAATACGAATTGGAGGACACCACATCTTTTCTGTTCTCCTAATCCCAAGTTCTAATCATATTAGACATGACATAGCCAACCACACAAGGAGATGGAATGCAAACGGCTCATCGACATTTGTGTCAATTACTTCTTTACTTGATAAACTTCGAAAGGGAAAGGATGGAATTAAGTTGAAGGAAGGACAAGTTATTCAAGATGACTTGAAGGCGAGAGACAATGTTGATGAGGAACACAAGCAGGGTTGGGCCGTTAAAAATTCACCGAAGTTTC-AAAATTTAGTTCTATGATTGATTGTACAGCTGGCTTGAATGAGGNT.....................................................................................................................GAACCATATATTCTGAAAGCTAACAGGGATC-AATTGTCCAGTTGCTGTCAGCCCTCTGGCTANCAG-CAACATGCCAGAATATGTACCTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E399933" ref_strand="+" ref_description="SGN-E399933 [cSTC-3-E2]">
      <seq>attacccgctgagtttaagcgttacaagaaattgctagctgaaatcttccccaaatcaccagatggctcgcctaatgaaaggaaaatagtgaaattatgtgaatatgcagcgaaaaatcctttcagaatcccgaagattgcaaagtatcttgaagaaagatgctacaaagagctgcgaagtgagcacatcaagtttatcaatgttattgctgaggtgtacaataagttgctttgcatgtgcaaggagcaaatggcatactttgctgctagcctattagacatggttgttgaactgctggatgactctaagaaaggatggaattaagttgaaggaaggacatgttattcaagaagatttgaaggcgagagacaatgttgatgaggaacacaagcagggttgggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="17915" stop="11812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17615" g_stop="17569" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="61" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17568" i_stop="17215" i_length="354">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17214" g_stop="17140" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="136" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17139" i_stop="17067" i_length="73">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17066" g_stop="16951" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="252" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16950" i_stop="16403" i_length="548">
            <donor d_prob="0.700" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16402" g_stop="16347" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="308" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16346" i_stop="12208" i_length="4139">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.147" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12207" g_stop="12112" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="404" r_length="96" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E399933" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17615" e_stop="17569"/>
          <exon e_start="17214" e_stop="17140"/>
          <exon e_start="17066" e_stop="16951"/>
          <exon e_start="16402" e_stop="16347"/>
          <exon e_start="12207" e_stop="12112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCGTTACAAGAAATTGCTAGCTGAAATCTTCCCTAAATCACCAGTAAGTACATTGTCTAGCTTAAACTCCACTTTTCACTTGTCCACTTTGAACTTCCCATGCTCATTCAGAAATACTAATAATTAAGATGAATCGTTTACTTTAATACCCATGTTAATTGATGTATTTTCGTAGGTGATTTAGGGAATTAAGTTATGCTAAGCGTAAAACACGGAAAAAGATACGTGTCTTTTCGTTGTTATGTTGAAAGTGACATGTAAAAGTGAATGGAGGGAGTAACTCCCTTGTTATGCTTGAGAATGCAAGATATAAAGAGTAGCCATAGTCAATCCATGAATCTGCTTTGTTGGTACTTGTGATAGCAACATTCAATTGCTCTGCAACTTGTGTATGCAGGATGGCTCGCCTAATGAAAGGAAAATAGTGAAATTATGTGAATATGCAGCGAAAAATCCTTTCAGAATCCCGAAGGTATTGGTTTTCTTCACTGCCTGTGGATGTAAACCCTTTCAGTAAAATTAAACATGTCGCTTTTCTTGATCAGATCGCAAAGTATCTTGAAGAAAGATGCTACAAAGAGCTGCGAAGTGAGCACATCAAATTTATCAACGTAATTGCTGAGGTGTACAATAAGTTGCTTTGCATGTGCAAAGAGCAAATGTGAGTTATTATTTTTCAATATTTATGACCATCTCAGTGAAGTATAAGAGTTTGAACACCAAGAGTATTCTCTTGTAGTATTTTCCTGAATATGATATAATGGAACTCAATACGTTTAAGATTTCCCACAATTATTCTTTAATTTCTTCTGGCACTTTTTCAATCAAAGTGTCAGGCTTAACAATTTAAAACATCTTCAAATTACGCACTGGTAGGGCATGCCATAATTTTGAGTTTGATATTAGTCATTACTAATTCAAGCTGCTGCATGTAATCAACTATTGCAAGTTTACATAATACATATAATTTCATTAGTCCTATATTATTCCAACCTTCTATTTGCTAGCCCTTCGTTAAGTCTGCATTGCAGTTGATGCGCTTACCGGTAGACTGATTCTGTAATATAATGCTTTAGATTCTCATTGTTTGGCAAAACCTATGCTCGGTAACTCAGAGATCATTTTATTTCGTAAAATGATAACAAGTTGGAGTAAGCTTCCACTTAATCTTCTAGGGATGTAATATATTACCGATTTGTGTGTCTGCAGGGCATACTTTGCTGCTAGCCTATTAGACATGGTTGTTGAACTGCTGGATGACTCTAAGAAAGATGCTGTCAGGATTACTGGTTGCCAGACCCTGACCAGGTTTATTTATAGTCAGGTGATTAATGAAAATAATGTCCAATTCTCTATTGGGGTATCAATTTGGGTGTGTAATGAGTAGTTTATTAAATCTAAATATGTAACAGAATCACATAAATTCATACCTTCATTAGATGTAAAAGAAAAGTCCTTGAATGTCTAATTGCATATTCTTTGCACTATGCTGTTCTGGTTGATTAAAGAAGCTTTGCTGATTAATTCACCTTAAAAACTTCTTTGGGCTCCAAAAGTGGTATTCAGTAATCAGTATTCAATATTCATATCTGAGCAACCTCAAATAAATATAGGGGAGTTTAAGCTAGTGTGCTTTTGTTAGTTGAAGCCATACTATAAAACTAAGTTATTTTGATAGTCAAAACTTTTGTTATTGAAGCTAAAGTGTGTTACATATGGTTGAGTTCTTCCTCTTACTTGTATAGATGAGCATGCCACTTTAGTTGTACAGTGTAAAGAGTCACTTCTAATCATCTTATGCATGTTAATCTGAGATGACTATCTGCCCATGTATGTTTATAGAATTTTTATTCCCCACGAATCTTGTATGTATAATTACTGCTTCCTAGTTATGGTAAACCCAGAGTCATTCTGCACTAGCTGAAGATTGACATTAGTTTCTTTTATTTCTAAAATTACTTGCCATCTTATTTTGGAAGCAGGTAGATGGAACATACACATATAACATTGAAACTTTGGTTCCCAAAGTATGTTCATTGGCACGGGAGACTGGTGAAGAACATGAAAAACGCAGCTTGAGGGCATCAAGTTTGCAGTGTCTTTCTGCCATGGTATTGTGAAATTACTTTTATGGTTCAGTCAAAAGCCATTGTTTTAACAATGCTTGCTTTATATGGCAGCAATTCTCCTCATACAAGTTTGCTGAATGTTTAGTCAGACCTGAGTAATTGAATCCACCTTTGCAGGTTTGGTTCATGGCTGAGTTCTCTCATATATTTGTTGATTTTGATGAGGTTAGTACAGTGATCTCTCTCTCTCTCACACACACACAAGATGTTCTAGTTCCTTGAGTTATTGTTCCCTATATTTGTAAACTTTACATACTCTTCATTTGCCAGAACATATTTCATGAGTCTTTATTGTGAGATTTGTGTTCCCTATATTTGTGAAAATTACATACTCATCATTTGCCAGAACATATTTCATGAGTCTTTATTGTGAGATTTGATATGAAGGTTATCTGAAATAGACAGTGATATGTTGTGGATATTAATGTAAATCTTGTATCCCATCTTGGGTGAGTCCTAAGAGTCTCTATCCTTTGATTGTTTGCATTTATTGTAATCGATTATATCAGATATTCATTGTCATTGGCTTTCAAGTGAAAAATGACACCAGTAAATAAACTGAAATGTTCGTGAACAAACTCAGCCAAAACACGAGCTTATTGTATAGCTCAATATTAAATGATCTGCGCTCAGTATCACCTCTTTCCTATTTTTCTTTGTGAATATGAAAGGTCTCCAATTCTTGCAGGGGCATAATCTGTTTTCTCTCTGTCTCTGCATGGGTTTTCAACTTCCCCAAGTCCAAGTGATAAAATAGGAGATTATTTAGTCCCTCAGTTTCAATTTGTTTGTCGTACTTTCTTTTGGTTTAGACAAGAAGAGTTGAGTTCAGTTCAAGCTTGAAGGAATGTACTGAAGTTGAGTATGTGCTTGACACGTGGCACATGGTAATTCTACTAAGATGCTGTGCTTGCAGTAGTAGTCAGACCAAGTGCAAGCATCTGTAAATTGCTTGGGTTGGCTCATTTACAACTCTTAAGAAAAAATGCATTGTCTTGTTTTCCCATTCTAGTTGGTTATTCTAGATTTTCTGACTAGGAATTATCCGTGTATGGATGATTTCTTCTCAGAATGTTGTCTTTTGTTAACAAATGACAATAACTAGCCATCATTGAAGTTCTATATCATTTTGTGCAGATTGTTCATGTGACTCTGGATAACTATGAGCCTGAAATGCATAATGAAGATTTTGAACGAGGGGAGGCACACCACAATTGGGTGGATGAAGTTGTTAGATCTGAAGGAAGAGCTGTTGGTAGTGAATTTGGTCCTCGCCAAATTAGACCCAGACCTGATAAGAAAGATCCATCTTCATTAACAAGGTTTGTGCCGCTAAATTCACTAAAAGTTTGGCTTTCTTACCAGATAATCGCGACTGCTGCTAATGCATTGATATCTCTTTTAATCACTTTATCTACCTACATTTTTATCTTTCTGCCTCAAATTGTTTCTACAGAGAAGAAATCGAAACACCAAAAGTATGGGCTCAAATTTGTCTTGAGAGAATGGCTGACCTGGCCGAAGAGAGCAGTACAATGCGTAGGGTGTTAGAGCCAATGTTTGTCCATTTTGACCATGGGAGGCACTGGGTTTCTCCACATGGATCGGCTGTGATGGTTCTCTCCGATATGATCTACTTTGTTGAAAGTTCAGGTGATCTGCTAATATACTGCTTCTTGAACCTCGGTGTCATTATCCCTAGTGTACTGATGTGCCTGCATTGGACAACTTTTCCTCTATCCTTGTCTTCATAGTGGAGTTCTTGGTACATTTTGTTCATCAGTGTACAGCTGTATAACCAGATGTCACTTGTGAAGCAGGTGTTTCTTTGATGGGTTTCCCATTGCATTTCTGCTCACTGCTCAGTATTAATTCTTCTTCATAGATATTCCTTTTGCATGTAGAAAAAGTTACTAGACCTGCTTTTTCCGCGTTGTGTTTTGGAGAATAAGGTAAATGACAAAACACACTGTAAATTATATTGCTTAAACTGGTGGGTCAATGGCTGGTATCTGTTCTTATATCACCATCTAACACTGTAAAAGTATATTGCTTAAACACTGTTTTCCTAGAAGTCATCATAATTCTATACGTTGATGGCACAAATATTTGAATAGACTTGATGACATCTAAATGTTCTTCATTCTTGTGAATTTTCAGGGAATCAACAGTTGATTTTAACCGGTGTGATTCGGCATTTAGACCACAAGAATGTGGCACATGATCCTCAAACGAAGTCTTATGTCATCCAAACTGCTACTGCTTTGGCTCGACTCATTAGATTGGAAGCTAGTCTCTCAGATGTACGATTTGTCGGTGACTTGTGCAGACATTTGCGTAAGAGCCTTCAAGCAACTGTCGAATCAGTTCAAGAGCAAGAGCTTAACTTCAATCTTGCACTTCAAACATCTATCCAAGAATGCTTCCTAGAAACTGCTAAAGGGGTAATTTATGTTAGTTAATGAGTGGTTTTGATCGGCTATTTCTGATATTAACAGGTTTTTCCCGTAGATTGTTGATGCACGACCACTGTTTGATATGATGGCAATGATGCTGGAGAAGTTGCCCTCTCTTAAAGTGGTTGCCAGGGCTACAATGGGATCATTGATCATTCTTGCTCATATGATTTCATTAGCATCTGTTGTTTCACGACGTCAGCAGGTAAGTGATTGCCTGCTTTGTCATCCATGTTGGGTCTTCTTACATTGCCAGCTAGCTTGGTTGCCGTTATATATTTCCTCCTTTTAACTTTAGGCTTCTCGCACGTTTATTGTCTGTTTTGAGTAATCATGTCTGAGGTTAATGAATAAAATCTTCACAGAATGTTGGATGTGAATAAACTCTTCACAGAATGTTGGATGTGATTTGTTCTTTCTATGTATTCTAAATGAAATGGATATATTACCTGTTGTACATGATTTCTTATTTTTTTATGGTAACTGGCAAGTAATATCAATGGGAACAATGAAATTTTCTTGTTGAGTTGATTTATGTGTTCATCTTCTATATCATTTGCGTTTCAACAAGATTATTTTATATTTCATTATCTTAAATCCTTTTAGGTGTTCCCTGAGGAGCTGTTTGTTCAGCTACTGAAAGTGACATTGCATCCAGACGTTGAAATACGAATTGGAGGACACCACATCTTTTCTGTTCTCCTAATCCCAAGTTCTAATCATATTAGACATGACATAGCCAACCACACAAGGAGATGGAATGCAAACGGCTCATCGACATTTGTGTCAATTACTTCTTTACTTGATAAACTTCGAAAGGGAAAGGATGGAATTAAGTTGAAGGAAGGACAAGTTATTCAAGATGACTTGAAGGCGAGAGACAATGTTGATGAGGAACACAAGCAGGGTTGGGCC</genome_strand>
        <mrna_strand>TTAAGCGTTACAAGAAATTGCTAGCTGAAATCTTCCCCAAATCACCA..................................................................................................................................................................................................................................................................................................................................................................GATGGCTCGCCTAATGAAAGGAAAATAGTGAAATTATGTGAATATGCAGCGAAAAATCCTTTCAGAATCCCGAAG.........................................................................ATTGCAAAGTATCTTGAAGAAAGATGCTACAAAGAGCTGCGAAGTGAGCACATCAAGTTTATCAATGTTATTGCTGAGGTGTACAATAAGTTGCTTTGCATGTGCAAGGAGCAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATACTTTGCTGCTAGCCTATTAGACATGGTTGTTGAACTGCTGGATGACTCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGGATGGAATTAAGTTGAAGGAAGGACATGTTATTCAAGAAGATTTGAAGGCGAGAGACAATGTTGATGAGGAACACAAGCAGGGTTGGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737235" ref_strand="+" ref_description="SGN-E737235 [LC08DG12]">
      <seq>cattatttcttccttaaaattcacgcgcttactttgttcttgtctggtttcttgacttcccatttgctctttctatcaaagttcaaacctttgttggagttcttgaaaccccttttcactgggagttccaagatcttcttctgtagttgaagaaggaaaatgggatttatttcacggaagttattccctgcatgtgggaacatgtgcatttgctgtcctgctatgaggtctcgatctcgacaacccgttaagcgttacaagaaattgctagctgaaatcttccctaaatcaccagatggctcgcctaatgaaaggaaaatagtgaaattatgtgaatatgcagcgaaaaatcctttcagaatcccgaagatcgcaaagtatcttgaagaaagatgctacaaagagctgcgaagtgagcacatcaaatttatcaacgtaattgctgaggtgtacaataagttgctttgcatgtgcaaagagcaaatggcatactttgctgctagcctattagacatggttgttgaactgctggatgactctaagaaagatgctgtcaggattactggttgccagaccctgaccaggtttatttatagtcaggtagatggaacatacacatataacattgaaactttggttcccaaagtatgttcattggcacgggagactggtgaagaacatgaaaaacgcagcttgagggcatcaagtttgcagtgtctttctgccatggtttggttcatggctgagttctctcatatatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="18752" stop="15031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18456" g_stop="18302" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18301" i_stop="17708" i_length="594">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17707" g_stop="17569" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="294" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17568" i_stop="17215" i_length="354">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17214" g_stop="17140" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="369" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17139" i_stop="17067" i_length="73">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17066" g_stop="16951" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="485" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16950" i_stop="16403" i_length="548">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16402" g_stop="16288" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="600" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16287" i_stop="15630" i_length="658">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15629" g_stop="15501" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="729" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15500" i_stop="15366" i_length="135">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15365" g_stop="15331" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="764" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E737235" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18456" e_stop="18302"/>
          <exon e_start="17707" e_stop="17569"/>
          <exon e_start="17214" e_stop="17140"/>
          <exon e_start="17066" e_stop="16951"/>
          <exon e_start="16402" e_stop="16288"/>
          <exon e_start="15629" e_stop="15501"/>
          <exon e_start="15365" e_stop="15331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATTTCTTCCTTAAAATTCACGCGCTTACTTTGTTCTTGTCTGGTTTCTTGACTTCCCATTTGCTCTTTCTATCAAAGTTCAAACCTTTGTTGGAGTTCTTGAAACCCCTTTTCACTGGGAGTTCCAAGATCTTCTTCTGTAGTTGAAGAAGGTATTTTGCTTTTACTTCTTTCACTAGTTTTTGCTGTGTATATTGTCCTGGTAATTCTTCCTATTCTTGGGTTATTGTTTGTTTTTTGAGTTTTGGTGTTATTTTTCTTGGGTTATTGCTCCTTTGTGATTCTTGGTGTTATTTTTCTTGGGATTCTTGGGTTATTTTTTTTTTAAATGTTCAATTCTTGTTTTTGTGAAGATGATTAATGCTTTCTCTGTCTTGTCATTAATGATCTTGGTTTTCACGCTTTTGGCCTCTGTGTATCAGATTTTTTTTTTTTTACTTTTGTTACCGTTTCTTGTTGGTTGATCGATCTCTCTCTTTGCTGCATTTTGATTTTGGCTTGAGTTTTGAGTTGGTTGTGTTGTGGGTTATTTTTGATTCTTGGTGTTATTTTTCTTGGAGTTCTTGGTGTTTTTTTCTTGGATTCTTGGGTTTTTACTTTTAAGTGTTCAATTCCTTTTTTTGTAAGGTTGGTTAATACTTATCTATCTTGTCACTAAGGTTGTGTATGTATGCTATTTTGGTTGGGTTCTTTTGTTCTACCTTTTATGACTGAGAAATTTTACTTGTTTATTCTGATAACTGAAGGAAAATGGGATTTATTTCACGGAAGTTATTCCCTGCATGTGGGAACATGTGCATTTGCTGTCCTGCTATGAGGTCTCGATCTCGACAACCCGTTAAGCGTTACAAGAAATTGCTAGCTGAAATCTTCCCTAAATCACCAGTAAGTACATTGTCTAGCTTAAACTCCACTTTTCACTTGTCCACTTTGAACTTCCCATGCTCATTCAGAAATACTAATAATTAAGATGAATCGTTTACTTTAATACCCATGTTAATTGATGTATTTTCGTAGGTGATTTAGGGAATTAAGTTATGCTAAGCGTAAAACACGGAAAAAGATACGTGTCTTTTCGTTGTTATGTTGAAAGTGACATGTAAAAGTGAATGGAGGGAGTAACTCCCTTGTTATGCTTGAGAATGCAAGATATAAAGAGTAGCCATAGTCAATCCATGAATCTGCTTTGTTGGTACTTGTGATAGCAACATTCAATTGCTCTGCAACTTGTGTATGCAGGATGGCTCGCCTAATGAAAGGAAAATAGTGAAATTATGTGAATATGCAGCGAAAAATCCTTTCAGAATCCCGAAGGTATTGGTTTTCTTCACTGCCTGTGGATGTAAACCCTTTCAGTAAAATTAAACATGTCGCTTTTCTTGATCAGATCGCAAAGTATCTTGAAGAAAGATGCTACAAAGAGCTGCGAAGTGAGCACATCAAATTTATCAACGTAATTGCTGAGGTGTACAATAAGTTGCTTTGCATGTGCAAAGAGCAAATGTGAGTTATTATTTTTCAATATTTATGACCATCTCAGTGAAGTATAAGAGTTTGAACACCAAGAGTATTCTCTTGTAGTATTTTCCTGAATATGATATAATGGAACTCAATACGTTTAAGATTTCCCACAATTATTCTTTAATTTCTTCTGGCACTTTTTCAATCAAAGTGTCAGGCTTAACAATTTAAAACATCTTCAAATTACGCACTGGTAGGGCATGCCATAATTTTGAGTTTGATATTAGTCATTACTAATTCAAGCTGCTGCATGTAATCAACTATTGCAAGTTTACATAATACATATAATTTCATTAGTCCTATATTATTCCAACCTTCTATTTGCTAGCCCTTCGTTAAGTCTGCATTGCAGTTGATGCGCTTACCGGTAGACTGATTCTGTAATATAATGCTTTAGATTCTCATTGTTTGGCAAAACCTATGCTCGGTAACTCAGAGATCATTTTATTTCGTAAAATGATAACAAGTTGGAGTAAGCTTCCACTTAATCTTCTAGGGATGTAATATATTACCGATTTGTGTGTCTGCAGGGCATACTTTGCTGCTAGCCTATTAGACATGGTTGTTGAACTGCTGGATGACTCTAAGAAAGATGCTGTCAGGATTACTGGTTGCCAGACCCTGACCAGGTTTATTTATAGTCAGGTGATTAATGAAAATAATGTCCAATTCTCTATTGGGGTATCAATTTGGGTGTGTAATGAGTAGTTTATTAAATCTAAATATGTAACAGAATCACATAAATTCATACCTTCATTAGATGTAAAAGAAAAGTCCTTGAATGTCTAATTGCATATTCTTTGCACTATGCTGTTCTGGTTGATTAAAGAAGCTTTGCTGATTAATTCACCTTAAAAACTTCTTTGGGCTCCAAAAGTGGTATTCAGTAATCAGTATTCAATATTCATATCTGAGCAACCTCAAATAAATATAGGGGAGTTTAAGCTAGTGTGCTTTTGTTAGTTGAAGCCATACTATAAAACTAAGTTATTTTGATAGTCAAAACTTTTGTTATTGAAGCTAAAGTGTGTTACATATGGTTGAGTTCTTCCTCTTACTTGTATAGATGAGCATGCCACTTTAGTTGTACAGTGTAAAGAGTCACTTCTAATCATCTTATGCATGTTAATCTGAGATGACTATCTGCCCATGTATGTTTATAGAATTTTTATTCCCCACGAATCTTGTATGTATAATTACTGCTTCCTAGTTATGGTAAACCCAGAGTCATTCTGCACTAGCTGAAGATTGACATTAGTTTCTTTTATTTCTAAAATTACTTGCCATCTTATTTTGGAAGCAGGTAGATGGAACATACACATATAACATTGAAACTTTGGTTCCCAAAGTATGTTCATTGGCACGGGAGACTGGTGAAGAACATGAAAAACGCAGCTTGAGGGCATCAAGTTTGCAGTGTCTTTCTGCCATGGTATTGTGAAATTACTTTTATGGTTCAGTCAAAAGCCATTGTTTTAACAATGCTTGCTTTATATGGCAGCAATTCTCCTCATACAAGTTTGCTGAATGTTTAGTCAGACCTGAGTAATTGAATCCACCTTTGCAGGTTTGGTTCATGGCTGAGTTCTCTCATATATTTGT</genome_strand>
        <mrna_strand>CATTATTTCTTCCTTAAAATTCACGCGCTTACTTTGTTCTTGTCTGGTTTCTTGACTTCCCATTTGCTCTTTCTATCAAAGTTCAAACCTTTGTTGGAGTTCTTGAAACCCCTTTTCACTGGGAGTTCCAAGATCTTCTTCTGTAGTTGAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGGATTTATTTCACGGAAGTTATTCCCTGCATGTGGGAACATGTGCATTTGCTGTCCTGCTATGAGGTCTCGATCTCGACAACCCGTTAAGCGTTACAAGAAATTGCTAGCTGAAATCTTCCCTAAATCACCA..................................................................................................................................................................................................................................................................................................................................................................GATGGCTCGCCTAATGAAAGGAAAATAGTGAAATTATGTGAATATGCAGCGAAAAATCCTTTCAGAATCCCGAAG.........................................................................ATCGCAAAGTATCTTGAAGAAAGATGCTACAAAGAGCTGCGAAGTGAGCACATCAAATTTATCAACGTAATTGCTGAGGTGTACAATAAGTTGCTTTGCATGTGCAAAGAGCAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATACTTTGCTGCTAGCCTATTAGACATGGTTGTTGAACTGCTGGATGACTCTAAGAAAGATGCTGTCAGGATTACTGGTTGCCAGACCCTGACCAGGTTTATTTATAGTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGGAACATACACATATAACATTGAAACTTTGGTTCCCAAAGTATGTTCATTGGCACGGGAGACTGGTGAAGAACATGAAAAACGCAGCTTGAGGGCATCAAGTTTGCAGTGTCTTTCTGCCATG.......................................................................................................................................GTTTGGTTCATGGCTGAGTTCTCTCATATATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E399934" ref_strand="+" ref_description="SGN-E399934 [cSTC-3-E14]">
      <seq>atcaccagatggctcgcctaatgaaaggaaaatagtgaaattatgtgaatatgcagcgaaaaatcctttcagaatcccgaagattgcaaagtatcttgaagaaagatgctacaaagagctgcgaagtgagcacatcaagtttatcaatgttattgctgaggtgtacaataagttgctttgcatgtgcaaggagcaaatggcatactttgctgctagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="17517" stop="16083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17214" g_stop="17140" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="82" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17139" i_stop="17067" i_length="73">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17066" g_stop="16951" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="198" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16950" i_stop="16403" i_length="548">
            <donor d_prob="0.700" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16402" g_stop="16383" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="218" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E399934" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17214" e_stop="17140"/>
          <exon e_start="17066" e_stop="16951"/>
          <exon e_start="16402" e_stop="16383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGCTCGCCTAATGAAAGGAAAATAGTGAAATTATGTGAATATGCAGCGAAAAATCCTTTCAGAATCCCGAAGGTATTGGTTTTCTTCACTGCCTGTGGATGTAAACCCTTTCAGTAAAATTAAACATGTCGCTTTTCTTGATCAGATCGCAAAGTATCTTGAAGAAAGATGCTACAAAGAGCTGCGAAGTGAGCACATCAAATTTATCAACGTAATTGCTGAGGTGTACAATAAGTTGCTTTGCATGTGCAAAGAGCAAATGTGAGTTATTATTTTTCAATATTTATGACCATCTCAGTGAAGTATAAGAGTTTGAACACCAAGAGTATTCTCTTGTAGTATTTTCCTGAATATGATATAATGGAACTCAATACGTTTAAGATTTCCCACAATTATTCTTTAATTTCTTCTGGCACTTTTTCAATCAAAGTGTCAGGCTTAACAATTTAAAACATCTTCAAATTACGCACTGGTAGGGCATGCCATAATTTTGAGTTTGATATTAGTCATTACTAATTCAAGCTGCTGCATGTAATCAACTATTGCAAGTTTACATAATACATATAATTTCATTAGTCCTATATTATTCCAACCTTCTATTTGCTAGCCCTTCGTTAAGTCTGCATTGCAGTTGATGCGCTTACCGGTAGACTGATTCTGTAATATAATGCTTTAGATTCTCATTGTTTGGCAAAACCTATGCTCGGTAACTCAGAGATCATTTTATTTCGTAAAATGATAACAAGTTGGAGTAAGCTTCCACTTAATCTTCTAGGGATGTAATATATTACCGATTTGTGTGTCTGCAGGGCATACTTTGCTGCTAGCC</genome_strand>
        <mrna_strand>GATGGCTCGCCTAATGAAAGGAAAATAGTGAAATTATGTGAATATGCAGCGAAAAATCCTTTCAGAATCCCGAAG.........................................................................ATTGCAAAGTATCTTGAAGAAAGATGCTACAAAGAGCTGCGAAGTGAGCACATCAAGTTTATCAATGTTATTGCTGAGGTGTACAATAAGTTGCTTTGCATGTGCAAGGAGCAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATACTTTGCTGCTAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395473" ref_strand="+" ref_description="SGN-E395473 [TUS-16-H15](-)">
      <seq>aaatacagagactccaaatcaaaactgcctctctgcagtctccagtgctacaaggcaatacgtgagaagattcaacatctaagttgcttgctgaacagagctctcacagccctgatactaatgggcacttggactttatttgtagagattcatgtgggaactgcaaagaaatggttgtgttccatatcatcattgtgcctatgccccgtttaccaagaattctagtatgtgtagagtagcttcataaagctactaaatatctcataacagagtcttttgtccgactcaattgaaagtgggatgaatcacacataatctacggtgcaccttctgaatagaaatgctctaagaatttgtgcttggaagagtgaacaaaagtataagaagaaacctttctcggtcacctctacaaccaataagatcaggctgaacatggatggaattgctgagggtgatctcgacgatccattatttggtgacattgtccatagcagaggtggcggatgtgggtacatagggataattggtattcggaacagtcatgctgctgagctatggaactcaaggatgaaagtttttatctaaacgttttgaagtggaatgtctgtctaagctgtaatgatgtgctgaatattactccgtttgattaagtgcctatattcaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="22752" stop="21488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22452" g_stop="21779" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E395473" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22452" e_stop="21779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAGAGACTCCAAATCAAAACTGCCTCTCTGCAGTCTCCAGTGCTACAAGGCAATACGTGAGAAGATTCAACATCTAAG-TGCTTGCTGAACAGAGCTCTCACAGCCCTGATACTAATGGGCACTTGGACTTTATTTGTAGAGATTCATGTGGGAACTGCAAAGAAATGGTTGTGTTCCATATCATCATTGTGCCTATGCCCCGTTTACCAAGAATTCTAGTATGTGTAGAGTAGCTTCATAAAGCTACTAAATATCTCATAACAGAGTCTTTTGTCCGACTCAATTGAAAGTGGGATGAATCACACATAATCTACGGTGCACCTTCTGAATAGAAATGCTCTAAGAATTTGTGCTTGGAAGAGTGAACAAAAGTATAAGAAGAAACCTTTCTCGGTCACCTCTACAACCAATAAGATCAGGCTGAACATGGATGGAATTGCTGAGGGTGATCTCGACGATCCATTATTTGGTGACATTGTCCATAGCAGAGGTGGCGGATGTGGGTACATAGGGATAATTGGTATTCGGAACAGTCATGCTGCTGAGCTATGGAACTCAAGGATGAAAGTTTTTATCTAAACGTTTTGAAGTGGAATGTCTGTCTAAGCTGTAATGATGTGCTGAATATTACTCCGTTTGATTAAGTGCCTATATTCAATATTGTCACTC</genome_strand>
        <mrna_strand>AAATACAGAGACTCCAAATCAAAACTGCCTCTCTGCAGTCTCCAGTGCTACAAGGCAATACGTGAGAAGATTCAACATCTAAGTTGCTTGCTGAACAGAGCTCTCACAGCCCTGATACTAATGGGCACTTGGACTTTATTTGTAGAGATTCATGTGGGAACTGCAAAGAAATGGTTGTGTTCCATATCATCATTGTGCCTATGCCCCGTTTACCAAGAATTCTAGTATGTGTAGAGTAGCTTCATAAAGCTACTAAATATCTCATAACAGAGTCTTTTGTCCGACTCAATTGAAAGTGGGATGAATCACACATAATCTACGGTGCACCTTCTGAATAGAAATGCTCTAAGAATTTGTGCTTGGAAGAGTGAACAAAAGTATAAGAAGAAACCTTTCTCGGTCACCTCTACAACCAATAAGATCAGGCTGAACATGGATGGAATTGCTGAGGGTGATCTCGACGATCCATTATTTGGTGACATTGTCCATAGCAGAGGTGGCGGATGTGGGTACATAGGGATAATTGGTATTCGGAACAGTCATGCTGCTGAGCTATGGAACTCAAGGATGAAAGTTTTTATCTAAACGTTTTGAAGTGGAATGTCTGTCTAAGCTGTAATGATGTGCTGAATATTACTCCGTTTGATTAAGTGCCTATATTCAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306887" ref_strand="+" ref_description="SGN-E306887 [cLEY-11-P22]">
      <seq>ttggatgtagaaaaaagcggaagatatcaagggtgttaagtcaaagtagcaaagtttatagtgcagatctgagttattacgattcgcttaaagcaggtaaagggattgagaaatccaaatctgaaagagcatctcagggttcggactatgaagaggtggtggcttctgatactgagttaactccgaaaaagaagaaaaaactaaaggaattagctgatatctcagtagttgaaaggagaaaaatggccgtgactactcgccagcaggcacttcaatctggaaaagatatttcttgcagtgcagttgagtttccccatagacttccacctgcaccacctaaaaaacaaaaggagaagctctctgaagtggagcagcagttgaagaaagctgaggctgcgcaaagacgcaggatgcaagctgaaaaggctgctcgagagtcggaggctgaagcaataaggaaaatcctaagtcaagattctagtaggaaaaagcgagaagataaaattaagaagcgtcaagaggagttagcacaggaaagaactggagcagcttcttcactatcatcaaatgctatcagatgggttatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="24356" stop="22429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24056" g_stop="23715" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23714" i_stop="23640" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23639" g_stop="23539" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="443" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23538" i_stop="23434" i_length="105">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23433" g_stop="23344" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="533" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23343" i_stop="22784" i_length="560">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22783" g_stop="22729" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="588" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E306887" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24056" e_stop="23715"/>
          <exon e_start="23639" e_stop="23539"/>
          <exon e_start="23433" e_stop="23344"/>
          <exon e_start="22783" e_stop="22729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGTAGAAAAAAGCGGAAGATATCAAGGGTGTTAAGTCAAAGTAGCAAAGTTTATAGTGCAGATCTGAGTTATTACGATTCGCTTAAAGCAGTTAAAGGGATTGAGAAATCCAAATCTGAAAGAGCATCTCAGGGTTCGGACTATGAAGAGGTGGTGGTTTCTGATACTGAGTTAGTACCGAAGAAGAAGAAAAAACTAAAGGAATTAGCTGATATCTCAGTAGTTGAAAGGAGAAAAATGGCCGTGACTACTCGCCAGCAGGCACTTCAATCTGGAAAAGATATTTCTTGCAGTGCAGTTGAGTTTCCCCATAGACTTCCACCTGCACCACCTAAAAGTGAGTATCTCTCTTCTATGGTTTACATATTTCAACTGAGGATCAGCTGATAAATTTAGCGTAATCTGCTTGCAGAACAAAAGGAGAAGCTCTCTGAAGTGGAGCAGCAGTTGAAGAAAGCTGAGGCTGCGCAAAGACGCAGGATGCAAGCTGAAAAGGCTGCTCGAGAGTCGGAGGTGTATACATCTTACTCAAGTTTATGTGCTTATGTGTTTTCATTGTCCAAATAGTTTCCATACAGCTCTTACGTAAATGGTTTTAACGTATATAGCTTTTTGCAGGCTGAAGCAATAAGGAAAATCCTAAGTCAAGATTCTAGTAGGAAAAAGCGAGAAGATAAAATTAAGAAGCGTCAAGAGGAGTTAGCACAGGTGAGAGTACAAAACAAGCAAAGAATTGAATTTTTTTTAGTTTGATGTTTCCCCTCCTACTTGATAGTTTTTGGAAATTTCCCAAGAACTTGTTTTTTGGGTCGAAATCTAGCACACCTATTATCTTCTGTTTTCTACTTCTATGTTTTTGTTTTTAAGATTCTTCTTTCTTTCTTTTTTTAGTTTCTTCCTCCCTTCTTGCCATCTATATGAATACTTCCTTTTAGTTCATTCAGTTCTCAATCCCACTTTCCTTGGGTCACCATCCCCAGCAATGGCAAAAAGAGCTTCTTCCCCCCTTCTGCTCCTTACTCCTTTGGAAGAGTGTTGCACCGTATGTCTTTTAAAGTGTCTATGACATGCTTAGATGAGCACATCCAGATGTATGGCCATTTGCCCATTTGCATGTAAGTTTAAATCGTTAGGGCGAAGTCGCTGCTCTTTAAAGAGAGTATTTCCTTGTTGAGGAGCCAAAAGTTGCACTATTAAATTTTCTTCTGCACTTGTACTCTTTAGTTTGTATGTCACAGTTTTTCTTTTGTGCATAATTATGCATTCAGGAAAGAACTGGAGCAGCTTCTTCACTATCATCAAATGCTATCAGATGGGTTATGG</genome_strand>
        <mrna_strand>TTGGATGTAGAAAAAAGCGGAAGATATCAAGGGTGTTAAGTCAAAGTAGCAAAGTTTATAGTGCAGATCTGAGTTATTACGATTCGCTTAAAGCAGGTAAAGGGATTGAGAAATCCAAATCTGAAAGAGCATCTCAGGGTTCGGACTATGAAGAGGTGGTGGCTTCTGATACTGAGTTAACTCCGAAAAAGAAGAAAAAACTAAAGGAATTAGCTGATATCTCAGTAGTTGAAAGGAGAAAAATGGCCGTGACTACTCGCCAGCAGGCACTTCAATCTGGAAAAGATATTTCTTGCAGTGCAGTTGAGTTTCCCCATAGACTTCCACCTGCACCACCTAAAA...........................................................................AACAAAAGGAGAAGCTCTCTGAAGTGGAGCAGCAGTTGAAGAAAGCTGAGGCTGCGCAAAGACGCAGGATGCAAGCTGAAAAGGCTGCTCGAGAGTCGGAG.........................................................................................................GCTGAAGCAATAAGGAAAATCCTAAGTCAAGATTCTAGTAGGAAAAAGCGAGAAGATAAAATTAAGAAGCGTCAAGAGGAGTTAGCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAACTGGAGCAGCTTCTTCACTATCATCAAATGCTATCAGATGGGTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398438" ref_strand="+" ref_description="SGN-E398438 [TUS-16-H15]">
      <seq>aggaaagtggattcctcgacggatcagttacctgggcagtttgccccttgaaacaattagaaaaatatgaggcatctcataaaagcaagtctctgctaaaaagacatttatcaggtgaaacatttgatgatgaagacactgaggatgatgatgatgatgagatccgtttcctggagaagctcaggtcttccaaatattctgcgtgttatagtgctggctatgaggatgatgatgaagttggatgtagaaaaaagcggaagatatcaagggtgttaagtcaaagtagcaaagtttatagtgcagatctgagttattacgattcgcttaaagcagttaaagggattgagaaatccaaatctgaaagagcatctcagggttcggactatgaagaggtggtggtttctgatactgagttagtaccgaagaagaagaaaaaactaaaggaattatctgatatctcagtagttgaaaggagaaaaatggccgtgactactcgccagcaggcacttcaatctggaaaagatatttcttgcagtgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="24594" stop="23454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24294" g_stop="23754" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E398438" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24294" e_stop="23754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAGTGGATTCCTCGACGGATCAGTTACCTGGGCAGTTTGCCCCTTTGAAACAATTAGAAAAATATGAGGCATCTCATAAAAGCAAGTCTCTGCTAAAAAGACATTTATCAGGTGAAACATTTGATGATGAAGACACTGAGGATGATGATGATGATGAGATCCGTTTCCTGGAGAAGCTCAGGTCTTCCAAATATTCTGCGTGTTATAGTGCTGGCTATGAGGATGATGATGAAGTTGGATGTAGAAAAAAGCGGAAGATATCAAGGGTGTTAAGTCAAAGTAGCAAAGTTTATAGTGCAGATCTGAGTTATTACGATTCGCTTAAAGCAGTTAAAGGGATTGAGAAATCCAAATCTGAAAGAGCATCTCAGGGTTCGGACTATGAAGAGGTGGTGGTTTCTGATACTGAGTTAGTACCGAAGAAGAAGAAAAAACTAAAGGAATTAGCTGATATCTCAGTAGTTGAAAGGAGAAAAATGGCCGTGACTACTCGCCAGCAGGCACTTCAATCTGGAAAAGATATTTCTTGCAGTGCAG</genome_strand>
        <mrna_strand>AGGAAAGTGGATTCCTCGACGGATCAGTTACCTGGGCAGTTTGCCCC-TTGAAACAATTAGAAAAATATGAGGCATCTCATAAAAGCAAGTCTCTGCTAAAAAGACATTTATCAGGTGAAACATTTGATGATGAAGACACTGAGGATGATGATGATGATGAGATCCGTTTCCTGGAGAAGCTCAGGTCTTCCAAATATTCTGCGTGTTATAGTGCTGGCTATGAGGATGATGATGAAGTTGGATGTAGAAAAAAGCGGAAGATATCAAGGGTGTTAAGTCAAAGTAGCAAAGTTTATAGTGCAGATCTGAGTTATTACGATTCGCTTAAAGCAGTTAAAGGGATTGAGAAATCCAAATCTGAAAGAGCATCTCAGGGTTCGGACTATGAAGAGGTGGTGGTTTCTGATACTGAGTTAGTACCGAAGAAGAAGAAAAAACTAAAGGAATTATCTGATATCTCAGTAGTTGAAAGGAGAAAAATGGCCGTGACTACTCGCCAGCAGGCACTTCAATCTGGAAAAGATATTTCTTGCAGTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395465" ref_strand="+" ref_description="SGN-E395465 [TUS-16-F15]">
      <seq>aggaaagtggattcctcgacggatcatttacctgggcagtttgccccttgaaacaattacaaaaatatgaggcatctcataaaagcaagtctctgctaaaaagacatttatcaggtgaaacatttgatgatgaagacactgaggatgatgatgatgatgagatccgtttcctggataagctcaggtcttccaaatattctgcgtgttataatgctagctataaggatgatgatgaatttggatgtagaagaaatcggaatatatcgcgggtgttaagtctaagtaccatagtttatactgcacatctgatttattacgattcgcatattgcagttaacgggattgagaaatccaaatctgaaaaagcatctcgagattcagactatgaagaggtggtggtttctgataatgaattattacctaagaagaagaaaaaactaaaggaattagctgatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="24594" stop="23535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24294" g_stop="23835" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E395465" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24294" e_stop="23835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAGTGGATTCCTCGACGGATCAGTTACCTGGGCAGTTTGCCCCTTTGAAACAATTAGAAAAATATGAGGCATCTCATAAAAGCAAGTCTCTGCTAAAAAGACATTTATCAGGTGAAACATTTGATGATGAAGACACTGAGGATGATGATGATGATGAGATCCGTTTCCTGGAGAAGCTCAGGTCTTCCAAATATTCTGCGTGTTATAGTGCTGGCTATGAGGATGATGATGAAGTTGGATGTAGAAAAAAGCGGAAGATATCAAGGGTGTTAAGTCAAAGTAGCAAAGTTTATAGTGCAGATCTGAGTTATTACGATTCGCTTAAAGCAGTTAAAGGGATTGAGAAATCCAAATCTGAAAGAGCATCTCAGGGTTCGGACTATGAAGAGGTGGTGGTTTCTGATACTGAGTTAGTACCGAAGAAGAAGAAAAAACTAAAGGAATTAGCTGATATCT</genome_strand>
        <mrna_strand>AGGAAAGTGGATTCCTCGACGGATCATTTACCTGGGCAGTTTGCCCC-TTGAAACAATTACAAAAATATGAGGCATCTCATAAAAGCAAGTCTCTGCTAAAAAGACATTTATCAGGTGAAACATTTGATGATGAAGACACTGAGGATGATGATGATGATGAGATCCGTTTCCTGGATAAGCTCAGGTCTTCCAAATATTCTGCGTGTTATAATGCTAGCTATAAGGATGATGATGAATTTGGATGTAGAAGAAATCGGAATATATCGCGGGTGTTAAGTCTAAGTACCATAGTTTATACTGCACATCTGATTTATTACGATTCGCATATTGCAGTTAACGGGATTGAGAAATCCAAATCTGAAAAAGCATCTCGAGATTCAGACTATGAAGAGGTGGTGGTTTCTGATAATGAATTATTACCTAAGAAGAAGAAAAAACTAAAGGAATTAGCTGATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206069" ref_strand="+" ref_description="SGN-E206069 [cLEC-20-L10]">
      <seq>ggaaagtgttttcctcgacggatcaattacctgggcagttggccccttgaagcaattataaaaatatgagggggtgctcataaaagcaagtctctgctaaaaagacatttatcaggtgaaacatttgatgatgaacacactgaggatgatgatgatgatgagatccgtttcctggagaagctcaggtcttccaaatattctgcgtgttatagtgctggctatgaggatgatgatgaagttggatgtagaaaaaagcggaagatatcaagggtgttaagtcaaagtagcaaagtttatagtgcagatctgagttattacgattcgcttaaagcagttaaagggattgagaaatccaaatctgaaagagcatctcanggttcggactattaagaggtggtggtttctgatactgagttagtaccgaagaagaagaaaaaactaaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="24593" stop="23548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24293" g_stop="23848" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E206069" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24293" e_stop="23848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGTGGATTCCTCGACGGATCAGTTACCTGGGCAGTTTGCCCCTTTGAAACAATTAGAAAAATATGA-GGCAT-CTCATAAAAGCAAGTCTCTGCTAAAAAGACATTTATCAGGTGAAACATTTGATGATGAAGACACTGAGGATGATGATGATGATGAGATCCGTTTCCTGGAGAAGCTCAGGTCTTCCAAATATTCTGCGTGTTATAGTGCTGGCTATGAGGATGATGATGAAGTTGGATGTAGAAAAAAGCGGAAGATATCAAGGGTGTTAAGTCAAAGTAGCAAAGTTTATAGTGCAGATCTGAGTTATTACGATTCGCTTAAAGCAGTTAAAGGGATTGAGAAATCCAAATCTGAAAGAGCATCTCAGGGTTCGGACTATGAAGAGGTGGTGGTTTCTGATACTGAGTTAGTACCGAAGAAGAAGAAAAAACTAAAGGAA</genome_strand>
        <mrna_strand>GGAAAGTGTTTTCCTCGACGGATCAATTACCTGGGCAGTTGGCCCC-TTGAAGCAATTATAAAAATATGAGGGGGTGCTCATAAAAGCAAGTCTCTGCTAAAAAGACATTTATCAGGTGAAACATTTGATGATGAACACACTGAGGATGATGATGATGATGAGATCCGTTTCCTGGAGAAGCTCAGGTCTTCCAAATATTCTGCGTGTTATAGTGCTGGCTATGAGGATGATGATGAAGTTGGATGTAGAAAAAAGCGGAAGATATCAAGGGTGTTAAGTCAAAGTAGCAAAGTTTATAGTGCAGATCTGAGTTATTACGATTCGCTTAAAGCAGTTAAAGGGATTGAGAAATCCAAATCTGAAAGAGCATCTCANGGTTCGGACTATTAAGAGGTGGTGGTTTCTGATACTGAGTTAGTACCGAAGAAGAAGAAAAAACTAAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209244" ref_strand="+" ref_description="SGN-E209244 [cLEC-53-M7]">
      <seq>ggaaagtggattcctcgacggatcagttacctgggcagtttgccccttgaaacaattagaaaaatatgaggcatctcataaaagcaagtctctgctaaaaagacatttatcaggtgaaacatttgatgatgaagacactgaggatgatgatgatgatgagatccgtttcctggagaagctcaggtcttccaaatattctgcgtgttatagtgctggctatgaggatgatgatgaagttggatgtagaaaaaagcggaagatatcaagggtgttaagtcaaagtagcaaagtttatagtgcagatctgagttattacgattcgcttaaagcagttaaagggattgagaaatccaaatctgaaagagcatctcagggttcggactatgaagaggtggtggtttctgatactgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="24593" stop="23579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24293" g_stop="23879" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E209244" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24293" e_stop="23879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGTGGATTCCTCGACGGATCAGTTACCTGGGCAGTTTGCCCCTTTGAAACAATTAGAAAAATATGAGGCATCTCATAAAAGCAAGTCTCTGCTAAAAAGACATTTATCAGGTGAAACATTTGATGATGAAGACACTGAGGATGATGATGATGATGAGATCCGTTTCCTGGAGAAGCTCAGGTCTTCCAAATATTCTGCGTGTTATAGTGCTGGCTATGAGGATGATGATGAAGTTGGATGTAGAAAAAAGCGGAAGATATCAAGGGTGTTAAGTCAAAGTAGCAAAGTTTATAGTGCAGATCTGAGTTATTACGATTCGCTTAAAGCAGTTAAAGGGATTGAGAAATCCAAATCTGAAAGAGCATCTCAGGGTTCGGACTATGAAGAGGTGGTGGTTTCTGATACTGAGTT</genome_strand>
        <mrna_strand>GGAAAGTGGATTCCTCGACGGATCAGTTACCTGGGCAGTTTGCCCC-TTGAAACAATTAGAAAAATATGAGGCATCTCATAAAAGCAAGTCTCTGCTAAAAAGACATTTATCAGGTGAAACATTTGATGATGAAGACACTGAGGATGATGATGATGATGAGATCCGTTTCCTGGAGAAGCTCAGGTCTTCCAAATATTCTGCGTGTTATAGTGCTGGCTATGAGGATGATGATGAAGTTGGATGTAGAAAAAAGCGGAAGATATCAAGGGTGTTAAGTCAAAGTAGCAAAGTTTATAGTGCAGATCTGAGTTATTACGATTCGCTTAAAGCAGTTAAAGGGATTGAGAAATCCAAATCTGAAAGAGCATCTCAGGGTTCGGACTATGAAGAGGTGGTGGTTTCTGATACTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739066" ref_strand="+" ref_description="SGN-E739066 [LC16AA09]">
      <seq>cggtaacagagaactgatctatatcggcggcctcaaaaggagtctcagttgaatttaaattgtcgtgataattcatccatttcatcagcaccaccatctgatagtttgagcaaatcatctagttgtgataatgctgattatggtaatatttcaagaacatcttatagtaacctcattgaagctgaggctgccggtgagtttggtgtcgaaggtgggaactctgggtactcctgttccagtgataccgagcaaaagcatggtcagatagatatgagtagatttagtgaaggagaccaagcaacatctcgggtagaggatcccaaaagtggaactgtgatgtgcagtaatcattctggaatgccaggagtagtatcagatggagctgggaatgacaccaaagtcaagaaagtgaaactcaaagttggtggtgttacaaaaacaataaacacttctgtcgctggatcctcttcagatgcccctcagaaatggcaacccaaggtcattatttattttcctgttgtgatggctcctttatacacatttgctttatgaaacttaagatgtgcatcatactgattggggatgcaccttggtttaacgctaaagaaatggtgcagcatacaatagcagaatacaggtggacatcattcctcttatagtggaagggcaattggcttgcgaggtatcccctggaaggattttgctaaaactggttttggtgttaggaaagtggattcctcgacggatcagttacctgggcagtttgcccctttgaaacaattagaaaaatatgaggcatctcataaaagcaagtctctgctaaaaagacatttatcaggtgaaacatttgatgatgaagacactgaggatgatgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="25757" stop="23837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25458" g_stop="24832" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24831" i_stop="24391" i_length="441">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24390" g_stop="24137" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="881" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E739066" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25458" e_stop="24832"/>
          <exon e_start="24390" e_stop="24137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAACAGAGAACTGATCTATATCGGCGGCCTCAAAAGGAGTCTCAGTTGAATTTAAATTGTCGTGATAATTCATCCATTTCATCAGCACCACCATCTGATAGTTTGAGCAAATCATCTAGTTGTGATAATGCTGATTATGGTAATATTTCAAGAACATCTTATAGTAACCTCATTGAAGCTGAGGCTGCCGGTGAGTTTGGTGTCGAAGGTGGGAACTCTGGGTACTCCTGTTCCAGTGATACCGAGCAAAAGCATGGTCAGATAGATATGAGTAGATTTAGTGAAGGAGACCAAGCAACATCTCGGGTAGAGGATCCCAAAAGTGGAACTGTGATGTGCAGTAATCATTCTGGAATGCCAGGAGTAGTATCAGATGGAGCTGGGAATGACACCAAAGTCAAGAAAGTGAAACTCAAAGTTGGTGGTGTTACAAAAACAATAAACACTTCTGTCGCTGGATCCTCTTCAGATGCCCCTCAGAAATGGCAACCCAAGGTCATTATTTATTTTCCTGTTGTGATGGCTCCTTTATACACATTTGCTTTATGAAACTTAAGATGTGCATCATACTGATTGGGGATGCACCTTGGTTTAACGCTAAAGAAATGGTGCAGCATACAATAGGTATTTTTACTAGATGCTGCCTAGAAAAATGTGACCTAACTGGTCTTTCTTATTTATGAACTTTTCCCTAAGTTGTCTTGAATGGACTTGTCATATTGAAAATTTTCTAGAGTTCCCGTTGCCTGTCCATCAGCAATTTTTTTTGGCTCCTTTAGGTAATTTTCACTTTTTCATGGATGTAATATCCAAATTTGTCTACAATTTTTTAGCTCGTTTAAGTAGTTTTCTCCTTTTCGTGGCTGTAATATCCAAATTTGCGTGTTCTTTTTCCTTGATAAATGTCTAACATAAAAGCACCACCTAAGTACAAAAGAATTTGACTTGTCACCTATAAGACCACTTCCTCAGCAGTCTGCTGAAAGACTTCTGTTTAGATTCCTCAAGTTACAGATGATTGATGTCTTTTAGAGGCTAATTTAGGTTTCTTCTTATATTCCACAGCAGAATACAGGTGGACATCATTCCTCTTATAGTGGAAGGGCAATTGGCTTGCGAGGTATCCCCTGGAAGGATTTTGCTAAAACTGGTTTTGGTGTTAGGAAAGTGGATTCCTCGACGGATCAGTTACCTGGGCAGTTTGCCCCTTTGAAACAATTAGAAAAATATGAGGCATCTCATAAAAGCAAGTCTCTGCTAAAAAGACATTTATCAGGTGAAACATTTGATGATGAAGACACTGAGGATGATGATGATGA</genome_strand>
        <mrna_strand>CGGTAACAGAGAACTGATCTATATCGGCGGCCTCAAAAGGAGTCTCAGTTGAATTTAAATTGTCGTGATAATTCATCCATTTCATCAGCACCACCATCTGATAGTTTGAGCAAATCATCTAGTTGTGATAATGCTGATTATGGTAATATTTCAAGAACATCTTATAGTAACCTCATTGAAGCTGAGGCTGCCGGTGAGTTTGGTGTCGAAGGTGGGAACTCTGGGTACTCCTGTTCCAGTGATACCGAGCAAAAGCATGGTCAGATAGATATGAGTAGATTTAGTGAAGGAGACCAAGCAACATCTCGGGTAGAGGATCCCAAAAGTGGAACTGTGATGTGCAGTAATCATTCTGGAATGCCAGGAGTAGTATCAGATGGAGCTGGGAATGACACCAAAGTCAAGAAAGTGAAACTCAAAGTTGGTGGTGTTACAAAAACAATAAACACTTCTGTCGCTGGATCCTCTTCAGATGCCCCTCAGAAATGGCAACCCAAGGTCATTATTTATTTTCCTGTTGTGATGGCTCCTTTATACACATTTGCTTTATGAAACTTAAGATGTGCATCATACTGATTGGGGATGCACCTTGGTTTAACGCTAAAGAAATGGTGCAGCATACAATAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAATACAGGTGGACATCATTCCTCTTATAGTGGAAGGGCAATTGGCTTGCGAGGTATCCCCTGGAAGGATTTTGCTAAAACTGGTTTTGGTGTTAGGAAAGTGGATTCCTCGACGGATCAGTTACCTGGGCAGTTTGCCCCTTTGAAACAATTAGAAAAATATGAGGCATCTCATAAAAGCAAGTCTCTGCTAAAAAGACATTTATCAGGTGAAACATTTGATGATGAAGACACTGAGGATGATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E603335" ref_strand="+" ref_description="SGN-E603335 [56423]">
      <seq>ggcttgtggaacttggcccctatgaacaatgtcatgatcaatcttacatctaatatactgagctactaccgaatacacggtaaagggtggactccaacaaggaagacaaagaaagttgttcttcagggactgtaccaaccaggcatctttagcacttttcttacaggtgaaagagttccttcttggtttagctcaaagttcacaaaagaatcaagtgcatccttcaaagtacctacttgcaattccagaattgaaggattgagtttttgcattgtgtacaagcgttccacgattgggctctcaccgagcattctccgtcccccactgctaactccacctccaagaatttctcctcttgccatacgcaaagctcaaggaagaccacttcgttaccggccagtggaaaataaaccatatgaatcaacttttgattgtccatgcatcacagttaataactcaactcagagtctgatatggtcttaccagcccttgttctatggagttccgggagggagagaaggaatgatgtggttaagccattggaaactcgagaatcagttgagcagtgatgacgttatagaggtcacagttaccgcaggagatggaatcacagttatggaatttgggatcaaaattgtgcatgttgaagagacaaaagtgctagggaaaccaggctgtgaagatgcaagtgcagagagagctattgtcaatccatttggggatgttaatttggtacatgccagttcaaaggatactttttctgtccgtcttcctcctacttatcgttccttacgtgctgctcatgagccatttatggagaaggcacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="31967" stop="33479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32267" g_stop="32392" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32393" i_stop="32484" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32485" g_stop="33179" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="830" r_length="704" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E603335" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32267" e_stop="32392"/>
          <exon e_start="32485" e_stop="33179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGTTGAACTTGGCTCCTATGGACAATGTCATGATCAATCTTACATCTAACATACTGAGCTACTACCGAATACACGGTAAAGGGTGGACTCCAAGAAGGAAGACAAAGAAAGTTGTTCTTCAGGTATGTCCTGCTTATTATACCTGCAAATATCTACTTGCAATAGAATTGAAGACAGGAGCATATAAAAGTTCTATGAGTTACTTTTTTTGCAGGGACTGTACCAACCAGGCATCTTTAGCACTTTTCTTACTGGTGAAAGAGTTCCTCCTTGGTTTAGCTCAAAGTTCTCAAAAGAATCAAGTGCATCCTTCAAAGTACCTACTTGCAATTCCAGAATAGAGGGATTGAGTTTTTGCATTGTGTACAAGCGTTCCACGATTGGGCTTTCACCGAGCATTCTCGGTCCTTCACGGCTAACACCACCTCCAAGAATTTCTCATCTTGCCATGCGCAAAGCTCAAGGAAGACCACTTCGTTATAGGCTGGTGGAAAATAAACCATATGAATCAACTTTCGATTGCCCATGCATTACAGTTAATAACTTAACTCGAAGTTTGAAATGGTCTTACCAGCCCTTGTTCTATGGAGTTCCAGAAGGGAGAGAAGGAATGATGTGGTTAAGCCATTGGAAACTAGAGAATCAGTTGAGCAGTGAAGATGTTATAGAGGTCACAGTTACCGCAGGAGATGGTATCACAGTTATGGAATTTGGGATCAAAATTGTGCATGTTGAAGAGACAAAAGTGCTAGGGAAACCAGGCTGTGAAGA-G--A---C----AGA--TATTGTCAATCCATTTTGGGATGTTAATTTGGTACATGCCACCACTTCAAAGGATACTTTTTCTGTCCGTCTTCCTCCTACTTATCGTTCCTTACGTGCTGCTCATGAGCTATTTATGGAGAAGGCACTTAA</genome_strand>
        <mrna_strand>GGCTTGTGGAACTTGGCCCCTATGAACAATGTCATGATCAATCTTACATCTAATATACTGAGCTACTACCGAATACACGGTAAAGGGTGGACTCCAACAAGGAAGACAAAGAAAGTTGTTCTTCAG............................................................................................GGACTGTACCAACCAGGCATCTTTAGCACTTTTCTTACAGGTGAAAGAGTTCCTTCTTGGTTTAGCTCAAAGTTCACAAAAGAATCAAGTGCATCCTTCAAAGTACCTACTTGCAATTCCAGAATTGAAGGATTGAGTTTTTGCATTGTGTACAAGCGTTCCACGATTGGGCTCTCACCGAGCATTCTCCGTCCCCCACTGCTAACTCCACCTCCAAGAATTTCTCCTCTTGCCATACGCAAAGCTCAAGGAAGACCACTTCGTTACCGGCCAGTGGAAAATAAACCATATGAATCAACTTTTGATTGTCCATGCATCACAGTTAATAACTCAACTCAGAGTCTGATATGGTCTTACCAGCCCTTGTTCTATGGAGTTCCGGGAGGGAGAGAAGGAATGATGTGGTTAAGCCATTGGAAACTCGAGAATCAGTTGAGCAGTGATGACGTTATAGAGGTCACAGTTACCGCAGGAGATGGAATCACAGTTATGGAATTTGGGATCAAAATTGTGCATGTTGAAGAGACAAAAGTGCTAGGGAAACCAGGCTGTGAAGATGCAAGTGCAGAGAGAGCTATTGTCAATCCATTTGGGGATGTTAATTTGGTACATG---CCAGTTCAAAGGATACTTTTTCTGTCCGTCTTCCTCCTACTTATCGTTCCTTACGTGCTGCTCATGAGCCATTTATGGAGAAGGCACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398485" ref_strand="+" ref_description="SGN-E398485 [TUS-17-E22](-)">
      <seq>gataaagacacagaaatggacgtggatgagccttccacgaagaaaagcaagaaaaagaaatccaaagttgatgtggtggaatatgctcaacccatgatcgaggataaaccacttgaaacaaatggtgatgcctttgaagaacccaagtttgaaaagaaaaagaagaagaaagagaagcggaaatcagaagaggaggcagagcatgaagaggatcagactgttggtaatggtaatggcgtgcatgaggatggaacagcaaagaagaagaagaaaaagaagaacaaagaggacaatggagaggaactccaaggtgctgttgaaattaaaaagaagaaaaagaagtccaaagttcaagatgatgaataaatgtacaattttttttaattttggttttgttattttgacggtttttggtcaccttttatagttgcctgtatgctcctaggttagatttttgtttgtttttcaatttcgggtgtatcaaacactccttttatttactattatcaggatggttttatcatgattcccttccttattttttcacgtagatttattcctcaagtgttaagatcatttgggtacctgatttaaaaaggttactgtcatgcaatataagtgtgaactgtttaagttttcactgttttttgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="34206" stop="32959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34206" g_stop="34200" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34199" i_stop="33905" i_length="295">
            <donor d_prob="0.834" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33904" g_stop="33260" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="652" r_length="645" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="653" polyA_stop="670"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E398485" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34206" e_stop="34200"/>
          <exon e_start="33904" e_stop="33260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAGGTGAGTTTTGGGATCATGAAGCTATGTATCCTATTGAGTTGCAATCTTTAGGCTGAACAATTTAAACAGAACATAATGAAATGCTTATTTTGCAAGTGTACTTGCATGGTGCACATTATTGATAACTTACTGCCTGTATGATAAACATTTTGAATGTTGTGCCATGCTGCTGTTGTACTTGTTCAGTAAGTGCTACTGGCCCAACATTGGTTGAAATTCATTCCTGACAATTTTTTTGTTGGTTGTCCTTATTTTGGTTTCTGTATTGAGGATGTAGTATTTGTGTGCACTGCAGACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCAGAAGAGGAGGCAGAGCATGAAGAGGATCAGACTGTTGGTAATGGTAATGGCGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGAAAAAGAAGAACAAAGAGGACAATGGAGAGGAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAATTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTTTTGGTCACCTCTTATAGTTGCCTGTATGCTCCTAGGTTAGATTTTTGTCTGTCTTTCAATTTCGCGTGTATCAAACACTCCTCTTATTTACTATTATCAGGATGGTCTTATCATGATTCCCTTCCTTATTTTTTCACGTAGATTTATTCCTCAAGTGTTAAGATCATCTGGGTACCTGATTTAAAAAGGTTACTGTCATGCAATATAAGTGTGAACTGTTTAAGTTCTCACTGTTTTCTGAC</genome_strand>
        <mrna_strand>GATAAAG.......................................................................................................................................................................................................................................................................................................ACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTTTGAAGAACCCAAGTTTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCAGAAGAGGAGGCAGAGCATGAAGAGGATCAGACTGTTGGTAATGGTAATGGCGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGAAAAAGAAGAACAAAGAGGACAATGGAGAGGAACTCCAAGGTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAATTTTTTTTAATTTTGGTTTTGTTATTTTGACGGTTTTTGGTCACCTTTTATAGTTGCCTGTATGCTCCTAGGTTAGATTTTTGTTTGTTTTTCAATTTCGGGTGTATCAAACACTCCTTTTATTTACTATTATCAGGATGGTTTTATCATGATTCCCTTCCTTATTTTTTCACGTAGATTTATTCCTCAAGTGTTAAGATCATTTGGGTACCTGATTTAAAAAGGTTACTGTCATGCAATATAAGTGTGAACTGTTTAAGTTTTCACTGTTTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352267" ref_strand="+" ref_description="SGN-E352267 [cTOS-13-J18]">
      <seq>gcttctcgtctcgactgtttcttagataagagtactactacttttggagagaaactccgtgaacaagttgaggagcgtctagacttctatgacaagggggttgcaccacgaaaaaacctagatgtgatgaaagctgctattgaaaccgtcaaagataaagacacagaaatggacgtggatgagccttccacgaagaaaagcaagaaaaagaaatccaaagttgatgtggtggaatatgctcaacccatgatcgaggataaaccacttgaaacaaatggtgatgcctctgaagaacccaagtctgaaaagaaaaagaagaagaaagagaagcggaaatcagaagaggaggcagagcatgaagaggatcagactgttggtaatggtaatggcgtgcatgaggatggaacagcaaagaagaagaagaaaaagaagaacaaagaggacaatggagaggaactccaagctgctgttgaaattaaaaagaagaaaaagaagtccaaagttcaagatgatgaataaatgtacaattttttctaatcttggtcttgttattttgacggtttttggtcacctcttatagttgcctgtatgctcctangttagatttttgtctgtcttttcatttcgcgtgtatcaaacactcctcttatttactattatcaggatgggtctatcatgattcccttccntatttttcacgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="34766" stop="33060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34466" g_stop="34442" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34441" i_stop="34335" i_length="107">
            <donor d_prob="0.892" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34334" g_stop="34200" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="160" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34199" i_stop="33905" i_length="295">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33904" g_stop="33353" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="711" r_length="551" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E352267" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34466" e_stop="34442"/>
          <exon e_start="34334" e_stop="34200"/>
          <exon e_start="33904" e_stop="33353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTCGTCTCGACTGTTTCTTAGGTTAGTCTCTGCAAGACCGGAGGCAAACATTTAATCATTTCATTACCCAGTGGTTTTGTGTTTCTTTTGTTTTTGTTTTTCACTTCACTTCCCATATTTATCCACAGATAAGAGTACTACTACTTTTGGAGAGAAACTCCGTGAACAAGTTGAGGAGCGTCTAGACTTCTATGACAAGGGGGTTGCACCACGAAAAAACCTAGATGTGATGAAAGCTGCTATTGAAACCGTCGAAGATAAAGGTGAGTTTTGGGATCATGAAGCTATGTATCCTATTGAGTTGCAATCTTTAGGCTGAACAATTTAAACAGAACATAATGAAATGCTTATTTTGCAAGTGTACTTGCATGGTGCACATTATTGATAACTTACTGCCTGTATGATAAACATTTTGAATGTTGTGCCATGCTGCTGTTGTACTTGTTCAGTAAGTGCTACTGGCCCAACATTGGTTGAAATTCATTCCTGACAATTTTTTTGTTGGTTGTCCTTATTTTGGTTTCTGTATTGAGGATGTAGTATTTGTGTGCACTGCAGACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCAGAAGAGGAGGCAGAGCATGAAGAGGATCAGACTGTTGGTAATGGTAATGGCGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGAAAAAGAAGAACAAAGAGGACAATGGAGAGGAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAATTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTTTTGGTCACCTCTTATAGTTGCCTGTATGCTCCTAGGTTAGATTTTTGTCTGTCTTTCAATTTCGCGTGTATCAAACACTCCTCTTATTTACTATTATCAGGATGGTCTTATCATGATTCCCTTCCTTATTTTTTCACGTAGATTTATTC</genome_strand>
        <mrna_strand>GCTTCTCGTCTCGACTGTTTCTTAG...........................................................................................................ATAAGAGTACTACTACTTTTGGAGAGAAACTCCGTGAACAAGTTGAGGAGCGTCTAGACTTCTATGACAAGGGGGTTGCACCACGAAAAAACCTAGATGTGATGAAAGCTGCTATTGAAACCGTCAAAGATAAAG.......................................................................................................................................................................................................................................................................................................ACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCAGAAGAGGAGGCAGAGCATGAAGAGGATCAGACTGTTGGTAATGGTAATGGCGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGAAAAAGAAGAACAAAGAGGACAATGGAGAGGAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAATTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTTTTGGTCACCTCTTATAGTTGCCTGTATGCTCCTANGTTAGATTTTTGTCTGTCTTTTCATTTCGCGTGTATCAAACACTCCTCTTATTTACTATTATCAGGATGGGTCTATCATGATTCCCTTCCNTA-TTTTTCACGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408452" ref_strand="+" ref_description="SGN-E408452 [PPI-11-K11]">
      <seq>tgttgataatggtaatggtgtgcatgaggatggaaccagcaaagaagaaaaaaaaaaagaagaacaaggaggacaatggagaagaacctccaagctgctgttgaaattaaaaagaagaaaaagaagtccaaagtccaagatgatgaataaatgtacaatttttttctaatcttggtcttgttattttgacggttattggtcaccacctcttatagtgcctgtatgctgctagggtagatttttggctgtctttcaattttgcgtgtatcaaacactcatcttatttattattataggatggtcttatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="33993" stop="33086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33693" g_stop="33386" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E408452" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33693" e_stop="33386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGTAATGGTAATGGCGTGCATGAGGATGGAA-CAGCAAAGAAGAAGAAGAAAAAGAAGAACAAAGAGGACAATGGAGAGGAA-CTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAA-TTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTTTTGGT---CACCTCTTATAGTTGCCTGTATGCTCCTAGGTTAGATTTTTGTCTGTCTTTCAATTTCGCGTGTATCAAACACTCCTCTTATTTACTATTATCAGGATGGTCTTATCATGA</genome_strand>
        <mrna_strand>TGTTGATAATGGTAATGGTGTGCATGAGGATGGAACCAGCAAAGAAGAAAAAAAAAAAGAAGAACAAGGAGGACAATGGAGAAGAACCTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTCCAAGATGATGAATAAATGTACAATTTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTATTGGTCACCACCTCTTATAG-TGCCTGTATGCTGCTAGGGTAGATTTTTGGCTGTCTTTCAATTTTGCGTGTATCAAACACTCATCTTATTTATTATTAT-AGGATGGTCTTATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295987" ref_strand="+" ref_description="SGN-E295987 [cLET-27-E4]">
      <seq>gaactccaagctgctgttgaaattaaaaagaagaaaaagaagtccaaagttcaagatgatgaataaatgtacaattttttctaatcttggtcttgttattttgacggtttttggtcacctcttatagttgcctgtatgctcctaggttagatttttgtctgtctttcaatttcgcgtgtatcaaacactcctcttatttactattatcaggatggtcttatcatgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="33911" stop="33086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33611" g_stop="33387" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="226" polyA_stop="239"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E295987" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33611" e_stop="33387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAATTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTTTTGGTCACCTCTTATAGTTGCCTGTATGCTCCTAGGTTAGATTTTTGTCTGTCTTTCAATTTCGCGTGTATCAAACACTCCTCTTATTTACTATTATCAGGATGGTCTTATCATG</genome_strand>
        <mrna_strand>GAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAATTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTTTTGGTCACCTCTTATAGTTGCCTGTATGCTCCTAGGTTAGATTTTTGTCTGTCTTTCAATTTCGCGTGTATCAAACACTCCTCTTATTTACTATTATCAGGATGGTCTTATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357342" ref_strand="+" ref_description="SGN-E357342 [cTOS-23-M20]">
      <seq>agttgaggagcgtctagacttctatgacaagggggttgcaccacgaaaaaacctagatgtgatgaaagctgctattgaaaccgtcaaagataaagacacagaaatggacgtggatgagccttccacgaagaaaagcaagaaaaagaaatccaaagttgatgtggtggaatatgctcaacccatgatcgaggataaaccacttgaaacaaatggtgatgcctctgaagaacccaagtctgaaaagaaaaagaagaagaaagagaagcggaaatcagaagaggaggcagagcatgaagaggatcagactgttggtaatggtaatggcgtgcatgaggatggaacagcaaagaagaagaagaaaaagaagaacaaagaggacaatggagaggaactccaagctgctgttgaaattaaaaagaagaaaaagaagtccaaagttcaagatgatgaataaatgtacaattttttctaatcttggtcttgttattttgacggtttttggtcacctcttatagttgcctgtatgctcctaggttagatttttgtctgtctttcaatttcgcgtgtatcaaacactcctcttatttactattatcaggatggtcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="34594" stop="33091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34294" g_stop="34200" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34199" i_stop="33905" i_length="295">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33904" g_stop="33391" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="609" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E357342" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34294" e_stop="34200"/>
          <exon e_start="33904" e_stop="33391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAGGAGCGTCTAGACTTCTATGACAAGGGGGTTGCACCACGAAAAAACCTAGATGTGATGAAAGCTGCTATTGAAACCGTCGAAGATAAAGGTGAGTTTTGGGATCATGAAGCTATGTATCCTATTGAGTTGCAATCTTTAGGCTGAACAATTTAAACAGAACATAATGAAATGCTTATTTTGCAAGTGTACTTGCATGGTGCACATTATTGATAACTTACTGCCTGTATGATAAACATTTTGAATGTTGTGCCATGCTGCTGTTGTACTTGTTCAGTAAGTGCTACTGGCCCAACATTGGTTGAAATTCATTCCTGACAATTTTTTTGTTGGTTGTCCTTATTTTGGTTTCTGTATTGAGGATGTAGTATTTGTGTGCACTGCAGACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCAGAAGAGGAGGCAGAGCATGAAGAGGATCAGACTGTTGGTAATGGTAATGGCGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGAAAAAGAAGAACAAAGAGGACAATGGAGAGGAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAATTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTTTTGGTCACCTCTTATAGTTGCCTGTATGCTCCTAGGTTAGATTTTTGTCTGTCTTTCAATTTCGCGTGTATCAAACACTCCTCTTATTTACTATTATCAGGATGGTCTTAT</genome_strand>
        <mrna_strand>AGTTGAGGAGCGTCTAGACTTCTATGACAAGGGGGTTGCACCACGAAAAAACCTAGATGTGATGAAAGCTGCTATTGAAACCGTCAAAGATAAAG.......................................................................................................................................................................................................................................................................................................ACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCAGAAGAGGAGGCAGAGCATGAAGAGGATCAGACTGTTGGTAATGGTAATGGCGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGAAAAAGAAGAACAAAGAGGACAATGGAGAGGAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAATTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTTTTGGTCACCTCTTATAGTTGCCTGTATGCTCCTAGGTTAGATTTTTGTCTGTCTTTCAATTTCGCGTGTATCAAACACTCCTCTTATTTACTATTATCAGGATGGTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421743" ref_strand="+" ref_description="SGN-E421743 [STM-33-I24]">
      <seq>aagaaatccaaagttgatgtggtggaatatgctcaacccatgatcgaggataaaccacttgaaacaaatggtgatgcctctgaagaacccaagtctgaaaagaaaaagaagaagaaggagaagcggaaatcagaacaggaggcagagcatgaagaggatcagactgttgataatggtaatggtgtgcatgaggatggaacagcaaagaagaagaagaaaaagaagaacaaggaggacaatggagaggaactccaagctgctgttgaaattaaaaagaagaaaaagaagtccaaagtccaagatgatgaataaatgtacaatttttttctaatcttggtcttgttattttgacggttattggtcaccacctcttatagtgcctgtatgctgctagggtagatttttggctgtctttcaattttgcgtgtatcaaacactcatcttatttattattatcaggatggtcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="34157" stop="33091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33857" g_stop="33391" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E421743" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33857" e_stop="33391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCAGAAGAGGAGGCAGAGCATGAAGAGGATCAGACTGTTGGTAATGGTAATGGCGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGAAAAAGAAGAACAAAGAGGACAATGGAGAGGAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAA-TTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTTTTGGT---CACCTCTTATAGTTGCCTGTATGCTCCTAGGTTAGATTTTTGTCTGTCTTTCAATTTCGCGTGTATCAAACACTCCTCTTATTTACTATTATCAGGATGGTCTTAT</genome_strand>
        <mrna_strand>AAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAGGAGAAGCGGAAATCAGAACAGGAGGCAGAGCATGAAGAGGATCAGACTGTTGATAATGGTAATGGTGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGAAAAAGAAGAACAAGGAGGACAATGGAGAGGAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTCCAAGATGATGAATAAATGTACAATTTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTATTGGTCACCACCTCTTATAG-TGCCTGTATGCTGCTAGGGTAGATTTTTGGCTGTCTTTCAATTTTGCGTGTATCAAACACTCATCTTATTTATTATTATCAGGATGGTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295908" ref_strand="+" ref_description="SGN-E295908 [cLET-27-K16]">
      <seq>ttgaggagcgtctagacttctatgacaagggggttgcaccacgaaaaaacctagatgtgatgaaagctgctattgaaaccgtcgaagataaagacacagaaatggacgtggatgagccttccacgaagaaaagcaagaaaaagaaatccaaagttgatgtggtggaatatgctcaacccatgatcgaggataaaccacttgaaacaaatggtgatgcctctgaagaacccaagtctgaaaagaaaaagaagaagaaagagaagcggaaatcataagaagaggcagaacctggaaaaggatcagactgttggtaatggtaatggcgtgcatgaggatggaacagcaaagaagaagaagaaaaagaagaacaaagaggacaatggagaggaactccaagctgctgttgaaattaaaaagaagaaaaagaagtccaaagttcaagatgatgaataaatgtacaattttttctaatcttggtcttgttattttgacggtttttggtcacctcttatagttgcctgtatgctcctaggttagatttttgtctgtctttcaatttcgcgtgtatcaaacactcctcttatttactattatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="34592" stop="33103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34292" g_stop="34200" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34199" i_stop="33905" i_length="295">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33904" g_stop="33403" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="596" r_length="503" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E295908" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34292" e_stop="34200"/>
          <exon e_start="33904" e_stop="33403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGAGCGTCTAGACTTCTATGACAAGGGGGTTGCACCACGAAAAAACCTAGATGTGATGAAAGCTGCTATTGAAACCGTCGAAGATAAAGGTGAGTTTTGGGATCATGAAGCTATGTATCCTATTGAGTTGCAATCTTTAGGCTGAACAATTTAAACAGAACATAATGAAATGCTTATTTTGCAAGTGTACTTGCATGGTGCACATTATTGATAACTTACTGCCTGTATGATAAACATTTTGAATGTTGTGCCATGCTGCTGTTGTACTTGTTCAGTAAGTGCTACTGGCCCAACATTGGTTGAAATTCATTCCTGACAATTTTTTTGTTGGTTGTCCTTATTTTGGTTTCTGTATTGAGGATGTAGTATTTGTGTGCACTGCAGACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCAGAAGAGGAGGCAGAGCAT-GAAGAGGATCAGACTGTTGGTAATGGTAATGGCGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGAAAAAGAAGAACAAAGAGGACAATGGAGAGGAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAATTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTTTTGGTCACCTCTTATAGTTGCCTGTATGCTCCTAGGTTAGATTTTTGTCTGTCTTTCAATTTCGCGTGTATCAAACACTCCTCTTATTTACTATTATCA</genome_strand>
        <mrna_strand>TTGAGGAGCGTCTAGACTTCTATGACAAGGGGGTTGCACCACGAAAAAACCTAGATGTGATGAAAGCTGCTATTGAAACCGTCGAAGATAAAG.......................................................................................................................................................................................................................................................................................................ACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCATAAGAAGAGGCAGAACCTGGAAAAGGATCAGACTGTTGGTAATGGTAATGGCGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGAAAAAGAAGAACAAAGAGGACAATGGAGAGGAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAATTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTTTTGGTCACCTCTTATAGTTGCCTGTATGCTCCTAGGTTAGATTTTTGTCTGTCTTTCAATTTCGCGTGTATCAAACACTCCTCTTATTTACTATTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401423" ref_strand="+" ref_description="SGN-E401423 [PPC-4-K15]">
      <seq>tctgaagaacccaagtctgaaaagaaaaagaagaagaaggagaagcggaaatcagaacaggaggcagagcatgaagaggatcagactgttgataatggtaatggtgtgcatgaggatggaacagcaaagaagaagaagaaaaagaagaacaaggaggacaatggagaggaactccaagctgctgttgaaattaaaaagaagaaaaagaagtccaaagtccaagatgatgaataaatgtacaattttttctaatcttggtcttgttattttgacggttattggtcaccacctcttatagtgcctgtatgctgctagggtagatttttggctgtctttccattttgcggggatcaaacactcctcttatttattattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="34079" stop="33105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33779" g_stop="33405" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E401423" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33779" e_stop="33405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCAGAAGAGGAGGCAGAGCATGAAGAGGATCAGACTGTTGGTAATGGTAATGGCGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGAAAAAGAAGAACAAAGAGGACAATGGAGAGGAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAATTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTTTTGGT---CACCTCTTATAGTTGCCTGTATGCTCCTAGGTTAGATTTTTGTCTGTCTTTCAATTTCGCGTGTATCAAACACTCCTCTTATTTACTATTAT</genome_strand>
        <mrna_strand>TCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAGGAGAAGCGGAAATCAGAACAGGAGGCAGAGCATGAAGAGGATCAGACTGTTGATAATGGTAATGGTGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGAAAAAGAAGAACAAGGAGGACAATGGAGAGGAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTCCAAGATGATGAATAAATGTACAATTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTATTGGTCACCACCTCTTATAG-TGCCTGTATGCTGCTAGGGTAGATTTTTGGCTGTCTTTCCATTTTGCGGGGATCAAACACTCCTCTTATTTATTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335559" ref_strand="+" ref_description="SGN-E335559 [cTOE-2-N3]">
      <seq>aagaaaaagaaatccaaagttgatgtggtggaatatgctcaacccatgatcgaggataaaccacttgaaacaaatggtgatgcctctgaagaacccaagtctgaaaagaaaaagaagaagaaagagaagcggaaatcagaagaggaggcagagcatgaagaggatcagactgttggtaatggtaatggcgtgcatgaggatggaacagcaaagaagaagaagaaaaagaagaacaaagaggacaatggagaggaactccaagctgctgttgaaattaaaaagaagaaaaagaagtccaaagttcaagatgatgaataaatgtacaattttttctaatcttgggtctgttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="34163" stop="33211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33863" g_stop="33511" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E335559" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33863" e_stop="33511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCAGAAGAGGAGGCAGAGCATGAAGAGGATCAGACTGTTGGTAATGGTAATGGCGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGAAAAAGAAGAACAAAGAGGACAATGGAGAGGAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAATTTTTTCTAATCTTGGTCTTGTTATTT</genome_strand>
        <mrna_strand>AAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCAGAAGAGGAGGCAGAGCATGAAGAGGATCAGACTGTTGGTAATGGTAATGGCGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGAAAAAGAAGAACAAAGAGGACAATGGAGAGGAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAATTTTTTCTAATCTTGGGTCTGTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344234" ref_strand="+" ref_description="SGN-E344234 [cTOF-16-N12]">
      <seq>tttatgattatcttgtcgccaaaatgcacgacatagcaccaaatttggctgctctgattggtgaagttgtgggtgctcgtttaatttctcatgctggtagtctcacaaatttggcgaagtgcccttcttctacccttcagatcctgggtgctgagaaggcactcttcagggccttgaaaaccaaaggaaatacaccaaaatatggactcatattccattcttctttcattggccgtgcctctgctcgtaataaaggtcgaatggctcgttatcttgcaaacaagtgttctattgcttctcgtctcgactgtttcttagataagagtactactacttttggagagaaactccgtgaacaagttgaggagcgtctagacttctatgacaagggggttgcaccacgaaaaaacctagatgtgatgaaagctgctattgaaaccgtcaaagataaagacacagaaatggacgtggatgagccttccacgaagaaaagcaagaaaaagaaatccaaagttgatgtggtggaatatgctcaacccatgatcgaggataaaccacttgaaacaaatggtgatgcctctgaagaacccaagtctgaaaagaaaaagaagaagaaagagaagcggaaatcagaagaagaggcagagcatgaagaggatcagactgttggtaatggtaatggcgtgcatgaggatggaacagcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="35207" stop="33337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34907" g_stop="34739" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34738" i_stop="34591" i_length="148">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34590" g_stop="34442" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="318" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34441" i_stop="34335" i_length="107">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34334" g_stop="34200" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="453" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34199" i_stop="33905" i_length="295">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33904" g_stop="33641" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="717" r_length="264" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E344234" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34907" e_stop="34739"/>
          <exon e_start="34590" e_stop="34442"/>
          <exon e_start="34334" e_stop="34200"/>
          <exon e_start="33904" e_stop="33641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGATTATCTTGTCGCCAAAATGCACGACATAGCACCAAATTTGGCTGCTCTGATTGGTGAAGTTGTGGGTGCTCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTGGCGAAGTGCCCTTCTTCTACCCTTCAGATCCTGGGTGCTGAGAAGGCACTCTTCAGGTGATCTGCACTTATTTAATTTTGTTTGCACTTGCTCTCATCGTCTCATGTTAGGTTTTTCTGGTATATAGATTATTTCATTCTGCTATTGATCCCAACATTTTGTCTGATCACATTCTAAGTGTCACTTTCTGTAATTTTGTTTCAGGGCCTTGAAAACCAAAGGAAATACACCAAAATATGGACTCATATTCCATTCTTCTTTCATTGGCCGTGCCTCTGCTCGTAATAAAGGTCGAATGGCTCGTTATCTTGCAAACAAGTGTTCTATTGCTTCTCGTCTCGACTGTTTCTTAGGTTAGTCTCTGCAAGACCGGAGGCAAACATTTAATCATTTCATTACCCAGTGGTTTTGTGTTTCTTTTGTTTTTGTTTTTCACTTCACTTCCCATATTTATCCACAGATAAGAGTACTACTACTTTTGGAGAGAAACTCCGTGAACAAGTTGAGGAGCGTCTAGACTTCTATGACAAGGGGGTTGCACCACGAAAAAACCTAGATGTGATGAAAGCTGCTATTGAAACCGTCGAAGATAAAGGTGAGTTTTGGGATCATGAAGCTATGTATCCTATTGAGTTGCAATCTTTAGGCTGAACAATTTAAACAGAACATAATGAAATGCTTATTTTGCAAGTGTACTTGCATGGTGCACATTATTGATAACTTACTGCCTGTATGATAAACATTTTGAATGTTGTGCCATGCTGCTGTTGTACTTGTTCAGTAAGTGCTACTGGCCCAACATTGGTTGAAATTCATTCCTGACAATTTTTTTGTTGGTTGTCCTTATTTTGGTTTCTGTATTGAGGATGTAGTATTTGTGTGCACTGCAGACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCAGAAGAGGAGGCAGAGCATGAAGAGGATCAGACTGTTGGTAATGGTAATGGCGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGA</genome_strand>
        <mrna_strand>TTTATGATTATCTTGTCGCCAAAATGCACGACATAGCACCAAATTTGGCTGCTCTGATTGGTGAAGTTGTGGGTGCTCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTGGCGAAGTGCCCTTCTTCTACCCTTCAGATCCTGGGTGCTGAGAAGGCACTCTTCAG....................................................................................................................................................GGCCTTGAAAACCAAAGGAAATACACCAAAATATGGACTCATATTCCATTCTTCTTTCATTGGCCGTGCCTCTGCTCGTAATAAAGGTCGAATGGCTCGTTATCTTGCAAACAAGTGTTCTATTGCTTCTCGTCTCGACTGTTTCTTAG...........................................................................................................ATAAGAGTACTACTACTTTTGGAGAGAAACTCCGTGAACAAGTTGAGGAGCGTCTAGACTTCTATGACAAGGGGGTTGCACCACGAAAAAACCTAGATGTGATGAAAGCTGCTATTGAAACCGTCAAAGATAAAG.......................................................................................................................................................................................................................................................................................................ACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCAGAAGAAGAGGCAGAGCATGAAGAGGATCAGACTGTTGGTAATGGTAATGGCGTGCATGAGGATGGAACAGCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349510" ref_strand="+" ref_description="SGN-E349510 [cTOS-1-O3]">
      <seq>caaaatatggactcatattccattcttctttcattggccgtgcctctgctcgtaataaaggtcgaatggctcgttatcttgcaaacaagtgttctattgcttctcgtctcgactgtttcttagataagagtactactacttttggagagaaactccgtgaacaagttgaggagcgtctagacttctatgacaagggggttgcaccacgaaaaaacctagatgtgatgaaagctgctattgaaaccgtcaaagataaagacacagaaatggacgtggatgagccttccacgaagaaaagcaagaaaaagaaatccaaagttgatgtggtggaatatgctcaacccatgatcgaggataaaccacttgaaacaaatggtgatgcctctgaagaacccaagtctgaaaagaaaaagaagaagaaagagaagcggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="34864" stop="33428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34564" g_stop="34442" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34441" i_stop="34335" i_length="107">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34334" g_stop="34200" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="258" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34199" i_stop="33905" i_length="295">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33904" g_stop="33728" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="435" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E349510" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34564" e_stop="34442"/>
          <exon e_start="34334" e_stop="34200"/>
          <exon e_start="33904" e_stop="33728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATATGGACTCATATTCCATTCTTCTTTCATTGGCCGTGCCTCTGCTCGTAATAAAGGTCGAATGGCTCGTTATCTTGCAAACAAGTGTTCTATTGCTTCTCGTCTCGACTGTTTCTTAGGTTAGTCTCTGCAAGACCGGAGGCAAACATTTAATCATTTCATTACCCAGTGGTTTTGTGTTTCTTTTGTTTTTGTTTTTCACTTCACTTCCCATATTTATCCACAGATAAGAGTACTACTACTTTTGGAGAGAAACTCCGTGAACAAGTTGAGGAGCGTCTAGACTTCTATGACAAGGGGGTTGCACCACGAAAAAACCTAGATGTGATGAAAGCTGCTATTGAAACCGTCGAAGATAAAGGTGAGTTTTGGGATCATGAAGCTATGTATCCTATTGAGTTGCAATCTTTAGGCTGAACAATTTAAACAGAACATAATGAAATGCTTATTTTGCAAGTGTACTTGCATGGTGCACATTATTGATAACTTACTGCCTGTATGATAAACATTTTGAATGTTGTGCCATGCTGCTGTTGTACTTGTTCAGTAAGTGCTACTGGCCCAACATTGGTTGAAATTCATTCCTGACAATTTTTTTGTTGGTTGTCCTTATTTTGGTTTCTGTATTGAGGATGTAGTATTTGTGTGCACTGCAGACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAAT</genome_strand>
        <mrna_strand>CAAAATATGGACTCATATTCCATTCTTCTTTCATTGGCCGTGCCTCTGCTCGTAATAAAGGTCGAATGGCTCGTTATCTTGCAAACAAGTGTTCTATTGCTTCTCGTCTCGACTGTTTCTTAG...........................................................................................................ATAAGAGTACTACTACTTTTGGAGAGAAACTCCGTGAACAAGTTGAGGAGCGTCTAGACTTCTATGACAAGGGGGTTGCACCACGAAAAAACCTAGATGTGATGAAAGCTGCTATTGAAACCGTCAAAGATAAAG.......................................................................................................................................................................................................................................................................................................ACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745876" ref_strand="+" ref_description="SGN-E745876 [GI|47105526]">
      <seq>gaaccctaaacgagttctcttccgctacaattgagcaaacatcgggagagattgagaagtaaaattccatggcgctgtatctgttgtatgagtcggcgtctgggtacggtttgtttttggctcacgggattgatgagatagggcagaacacggaggcggtccggaactcaatcgatgacctcaatcgctttgggaaagttgtaaagattgaagcttttaacccttttgagtccgctcttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaactttttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcacatatccatgaagttactaagattccttgccaaagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaaatttgttaaaaaccttaagcctggtgattcggagaaagcccaacttggtctgagtcatagttacagcagagcaaaggtcaagttcaatgtcaaccgtgttgacaatatggtcactcaggcaatagtcctacttgacactcttgataaagatataaatacctttgccatgagagtcagagagtggtactcctggcatttccccgagttggtcaagattgtcaatgacaactatctatatgccaaggttgcaaaatttgttgatgacaaatctcaattgtctgaagacaaaatttcagcattaactgaaatagtcggagatgaagataaagcaaaagaaatcgtagaagctgcaaaagcttccatgggccaggatttgtcaccagttgacttgattaatgtcaagctatttgcacagagggtaatggaccttgttgaatacaggaaaaatctttatgattatcttgtcgccaaaatgcacgacatagcaccaaatttggctgctctgattggtgaagttgtgggtgctcgtttaatttctcatggtggtagtctcacaaatttggcgaagtgcccttcttctacccttcagatcctgggtgctgagaaggcactcttcagggccttgaaaaccaaaggaaatacaccaaaatatggactcatattccatttttctttcattggccgtgcctctgctggtaataaaggtggaatggctcgttatcttgcaaacaagtgttttattgcttctcgtctcgactgttttttagataagagtactactacttttggagagaaactccgtgaacaagttgaggagcgtctagacttttatgacaagggggttgcaccacgaaaaaacctagatgtgatgaaagctgctattgaaaccgtcgaagataaagacacagaaatggacgtggatgagccttccacgaagaaaagcaagaaaaagaaatccaaagttgatgtggtggaatatgctcaacccatgatggaggataaaccacttgaaacaaatggtgatgcctttgaagaacccaagtccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37322" stop="33441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37023" g_stop="36751" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="35953" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="488" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35787" g_stop="35630" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="646" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35629" i_stop="35254" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.539" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35253" g_stop="35066" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="834" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35065" i_stop="34992" i_length="74">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34991" g_stop="34739" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="835" r_stop="1087" r_length="253" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34738" i_stop="34591" i_length="148">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34590" g_stop="34442" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1088" r_stop="1236" r_length="149" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34441" i_stop="34335" i_length="107">
            <donor d_prob="0.892" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34334" g_stop="34200" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1237" r_stop="1371" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34199" i_stop="33905" i_length="295">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33904" g_stop="33742" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1372" r_stop="1534" r_length="163" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E745876" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37023" e_stop="36751"/>
          <exon e_start="36167" e_stop="35953"/>
          <exon e_start="35787" e_stop="35630"/>
          <exon e_start="35253" e_stop="35066"/>
          <exon e_start="34991" e_stop="34739"/>
          <exon e_start="34590" e_stop="34442"/>
          <exon e_start="34334" e_stop="34200"/>
          <exon e_start="33904" e_stop="33742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTAAACGAGTTCTCTTCCGCTACAATTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAGGTATGTTTACTCTTTGCCTTATCTAGATCCATGTGTTGTTCGTTTTAACATGCCATTCCATAATCATTTTGGTATTTATATCAAGTTCCATTTTTTATGCTCGGTAGTTTTCAAGTCACATGAATATATGTTTATTCACCTTAGAAGAGAACGTGACACATGCTTGTAATTGCAAGGACAATCTGATGCATGATTTTAACTTCCTGGCCATTTCTCTATCAGTTCAATTTATCTCTGTAACTGATATAGTCATGTATGCCATCCAATGTCCTTACATCTGGATGTCTTTCTGCAATATAGATGAAGTATATGTTTGTTTTGAATGCTGCCCTCCATTTCAGTCCATTTGATTCCTGTCGAATGCTTATTGATGCAGAGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACTGAAATAGTCGGAGATGAAGATAAAGCAAAAGAAATCGTAGAAGCTGCAAAAGCTTCCATGGGTATGATATTATCCTTTCTCAAGTCATTGATGGGTGCTCATTCCTTCTTCTAACGTTTTGGTTCTAATTCCCAGGCCAGGATTTGTCACCAGTTGACTTGATTAATGTCAAGCTATTTGCACAGAGGGTAATGGACCTTGTTGAATACAGGAAAAATCTTTATGATTATCTTGTCGCCAAAATGCACGACATAGCACCAAATTTGGCTGCTCTGATTGGTGAAGTTGTGGGTGCTCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTGGCGAAGTGCCCTTCTTCTACCCTTCAGATCCTGGGTGCTGAGAAGGCACTCTTCAGGTGATCTGCACTTATTTAATTTTGTTTGCACTTGCTCTCATCGTCTCATGTTAGGTTTTTCTGGTATATAGATTATTTCATTCTGCTATTGATCCCAACATTTTGTCTGATCACATTCTAAGTGTCACTTTCTGTAATTTTGTTTCAGGGCCTTGAAAACCAAAGGAAATACACCAAAATATGGACTCATATTCCATTCTTCTTTCATTGGCCGTGCCTCTGCTCGTAATAAAGGTCGAATGGCTCGTTATCTTGCAAACAAGTGTTCTATTGCTTCTCGTCTCGACTGTTTCTTAGGTTAGTCTCTGCAAGACCGGAGGCAAACATTTAATCATTTCATTACCCAGTGGTTTTGTGTTTCTTTTGTTTTTGTTTTTCACTTCACTTCCCATATTTATCCACAGATAAGAGTACTACTACTTTTGGAGAGAAACTCCGTGAACAAGTTGAGGAGCGTCTAGACTTCTATGACAAGGGGGTTGCACCACGAAAAAACCTAGATGTGATGAAAGCTGCTATTGAAACCGTCGAAGATAAAGGTGAGTTTTGGGATCATGAAGCTATGTATCCTATTGAGTTGCAATCTTTAGGCTGAACAATTTAAACAGAACATAATGAAATGCTTATTTTGCAAGTGTACTTGCATGGTGCACATTATTGATAACTTACTGCCTGTATGATAAACATTTTGAATGTTGTGCCATGCTGCTGTTGTACTTGTTCAGTAAGTGCTACTGGCCCAACATTGGTTGAAATTCATTCCTGACAATTTTTTTGTTGGTTGTCCTTATTTTGGTTTCTGTATTGAGGATGTAGTATTTGTGTGCACTGCAGACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAA</genome_strand>
        <mrna_strand>GAACCCTAAACGAGTTCTCTTCCGCTACAATTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAG.....................................................................................................................................................................CCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................AGAGTGGTACTCCTGGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACTGAAATAGTCGGAGATGAAGATAAAGCAAAAGAAATCGTAGAAGCTGCAAAAGCTTCCATGG..........................................................................GCCAGGATTTGTCACCAGTTGACTTGATTAATGTCAAGCTATTTGCACAGAGGGTAATGGACCTTGTTGAATACAGGAAAAATCTTTATGATTATCTTGTCGCCAAAATGCACGACATAGCACCAAATTTGGCTGCTCTGATTGGTGAAGTTGTGGGTGCTCGTTTAATTTCTCATGGTGGTAGTCTCACAAATTTGGCGAAGTGCCCTTCTTCTACCCTTCAGATCCTGGGTGCTGAGAAGGCACTCTTCAG....................................................................................................................................................GGCCTTGAAAACCAAAGGAAATACACCAAAATATGGACTCATATTCCATTTTTCTTTCATTGGCCGTGCCTCTGCTGGTAATAAAGGTGGAATGGCTCGTTATCTTGCAAACAAGTGTTTTATTGCTTCTCGTCTCGACTGTTTTTTAG...........................................................................................................ATAAGAGTACTACTACTTTTGGAGAGAAACTCCGTGAACAAGTTGAGGAGCGTCTAGACTTTTATGACAAGGGGGTTGCACCACGAAAAAACCTAGATGTGATGAAAGCTGCTATTGAAACCGTCGAAGATAAAG.......................................................................................................................................................................................................................................................................................................ACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATGGAGGATAAACCACTTGAAACAAATGGTGATGCCTTTGAAGAACCCAAGTCCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568751" ref_strand="+" ref_description="SGN-E568751 [13082]">
      <seq>atgaaagctgctattgaaaccgtcgaagataaagacacagaaatggacgtagatgagctttccacaaagaaaagcaagaaaaagaaatccaaagttgatgtggtggaatatgctcaagccatgatcgaggataaaccacttggaaacaaatggtgatgcctctgaagaacccaagtctgaacagaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="34533" stop="33450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34233" g_stop="34200" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34199" i_stop="33905" i_length="295">
            <donor d_prob="0.834" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33904" g_stop="33750" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="190" r_length="156" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E568751" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34233" e_stop="34200"/>
          <exon e_start="33904" e_stop="33750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAAGCTGCTATTGAAACCGTCGAAGATAAAGGTGAGTTTTGGGATCATGAAGCTATGTATCCTATTGAGTTGCAATCTTTAGGCTGAACAATTTAAACAGAACATAATGAAATGCTTATTTTGCAAGTGTACTTGCATGGTGCACATTATTGATAACTTACTGCCTGTATGATAAACATTTTGAATGTTGTGCCATGCTGCTGTTGTACTTGTTCAGTAAGTGCTACTGGCCCAACATTGGTTGAAATTCATTCCTGACAATTTTTTTGTTGGTTGTCCTTATTTTGGTTTCTGTATTGAGGATGTAGTATTTGTGTGCACTGCAGACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTT-GAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAG</genome_strand>
        <mrna_strand>ATGAAAGCTGCTATTGAAACCGTCGAAGATAAAG.......................................................................................................................................................................................................................................................................................................ACACAGAAATGGACGTAGATGAGCTTTCCACAAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAAGCCATGATCGAGGATAAACCACTTGGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAACAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395654" ref_strand="+" ref_description="SGN-E395654 [TUS-17-E22]">
      <seq>ttggtcaagattgtcaatgacaactatctatatgccaaggttgcaaaatttgttgatgacaaatctcaattgtctgaagacaaaatttcagcattaactgaaatagtcggagatgaagataaagcaaaagaaatcgtagaagctgcaaaagcttccatgggccaggatttgtcaccagttgacttgattaatgtcaagctatttgcacagagggtaatggaccttgttgaatacaggaaaaatctttatgattatcttgtcgccaaaatgcacgacatagcaccaaatttggctgctctgattggtgaagttgtgggtgctcgtttaatttctcatgctggtagtctcacaaatttggcgaagtgcccttcttctacccttcagatcctgggtgctgagaaggcactcttcagggccttgaaaaccaaaggaaatacaccaaaatatggactcatattccattcttctttcattggccgtgcctctgctcgtaataaaggtcgaatggctcgttatcttgcaaacaagtgttctattgcttctcgtctcgactgtttcttagataagagtactactacttttggagagaaactccgtgaacaagttgaggagcgtctagacttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="35525" stop="33970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35225" g_stop="35066" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35065" i_stop="34992" i_length="74">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34991" g_stop="34739" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="413" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34738" i_stop="34591" i_length="148">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34590" g_stop="34442" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="562" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34441" i_stop="34335" i_length="107">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34334" g_stop="34270" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="627" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E395654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35225" e_stop="35066"/>
          <exon e_start="34991" e_stop="34739"/>
          <exon e_start="34590" e_stop="34442"/>
          <exon e_start="34334" e_stop="34270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACTGAAATAGTCGGAGATGAAGATAAAGCAAAAGAAATCGTAGAAGCTGCAAAAGCTTCCATGGGTATGATATTATCCTTTCTCAAGTCATTGATGGGTGCTCATTCCTTCTTCTAACGTTTTGGTTCTAATTCCCAGGCCAGGATTTGTCACCAGTTGACTTGATTAATGTCAAGCTATTTGCACAGAGGGTAATGGACCTTGTTGAATACAGGAAAAATCTTTATGATTATCTTGTCGCCAAAATGCACGACATAGCACCAAATTTGGCTGCTCTGATTGGTGAAGTTGTGGGTGCTCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTGGCGAAGTGCCCTTCTTCTACCCTTCAGATCCTGGGTGCTGAGAAGGCACTCTTCAGGTGATCTGCACTTATTTAATTTTGTTTGCACTTGCTCTCATCGTCTCATGTTAGGTTTTTCTGGTATATAGATTATTTCATTCTGCTATTGATCCCAACATTTTGTCTGATCACATTCTAAGTGTCACTTTCTGTAATTTTGTTTCAGGGCCTTGAAAACCAAAGGAAATACACCAAAATATGGACTCATATTCCATTCTTCTTTCATTGGCCGTGCCTCTGCTCGTAATAAAGGTCGAATGGCTCGTTATCTTGCAAACAAGTGTTCTATTGCTTCTCGTCTCGACTGTTTCTTAGGTTAGTCTCTGCAAGACCGGAGGCAAACATTTAATCATTTCATTACCCAGTGGTTTTGTGTTTCTTTTGTTTTTGTTTTTCACTTCACTTCCCATATTTATCCACAGATAAGAGTACTACTACTTTTGGAGAGAAACTCCGTGAACAAGTTGAGGAGCGTCTAGACTTCTAT</genome_strand>
        <mrna_strand>TTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACTGAAATAGTCGGAGATGAAGATAAAGCAAAAGAAATCGTAGAAGCTGCAAAAGCTTCCATGG..........................................................................GCCAGGATTTGTCACCAGTTGACTTGATTAATGTCAAGCTATTTGCACAGAGGGTAATGGACCTTGTTGAATACAGGAAAAATCTTTATGATTATCTTGTCGCCAAAATGCACGACATAGCACCAAATTTGGCTGCTCTGATTGGTGAAGTTGTGGGTGCTCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTGGCGAAGTGCCCTTCTTCTACCCTTCAGATCCTGGGTGCTGAGAAGGCACTCTTCAG....................................................................................................................................................GGCCTTGAAAACCAAAGGAAATACACCAAAATATGGACTCATATTCCATTCTTCTTTCATTGGCCGTGCCTCTGCTCGTAATAAAGGTCGAATGGCTCGTTATCTTGCAAACAAGTGTTCTATTGCTTCTCGTCTCGACTGTTTCTTAG...........................................................................................................ATAAGAGTACTACTACTTTTGGAGAGAAACTCCGTGAACAAGTTGAGGAGCGTCTAGACTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E601418" ref_strand="+" ref_description="SGN-E601418 [54456]">
      <seq>ggcatttcccagagttggtcaagattgtcaatgacaattatctatatgccaaggttgcaaaattcgttgatgacaaatcccaattgtctgaagacaaaatttcagcattaactgaaatagtcggagatgaagataaagcaaaagaaatcgtagaagctgcaaaagcttccatgggccaggatttgtcaccagttgacttgattaatgtcaagctatttgcacagagggtaatggaccttggttgaatacaggaagaatctttatgattatcttgtcgccaaaatgcacgacatagcaccaaatttggctgctctgattggtgaagtcgtgggtgctcgtttaatttcccatgctggtagtctcacaaatttggcaaagtgcccttcttctacccttcagatcctgggtgctgagaaggcactcttcagggccttgaaaaccaaagaaatacaccaaaatatggactcatattccattcttctttcattggccgtgcctctgctcgtaataaaggtcgaatggctcgttatcttgcaaacaagtgttctattgccttctcggtctcgaactggtttcttaggattagagtactactacttttggagagaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="35539" stop="34128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35239" g_stop="35066" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35065" i_stop="34992" i_length="74">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34991" g_stop="34739" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="428" r_length="254" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34738" i_stop="34591" i_length="148">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34590" g_stop="34442" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="580" r_length="152" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34441" i_stop="34335" i_length="107">
            <donor d_prob="0.892" d_score="0.83"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34334" g_stop="34304" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="612" r_length="32" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E601418" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35239" e_stop="35066"/>
          <exon e_start="34991" e_stop="34739"/>
          <exon e_start="34590" e_stop="34442"/>
          <exon e_start="34334" e_stop="34304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACTGAAATAGTCGGAGATGAAGATAAAGCAAAAGAAATCGTAGAAGCTGCAAAAGCTTCCATGGGTATGATATTATCCTTTCTCAAGTCATTGATGGGTGCTCATTCCTTCTTCTAACGTTTTGGTTCTAATTCCCAGGCCAGGATTTGTCACCAGTTGACTTGATTAATGTCAAGCTATTTGCACAGAGGGTAATGGACCTT-GTTGAATACAGGAAAAATCTTTATGATTATCTTGTCGCCAAAATGCACGACATAGCACCAAATTTGGCTGCTCTGATTGGTGAAGTTGTGGGTGCTCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTGGCGAAGTGCCCTTCTTCTACCCTTCAGATCCTGGGTGCTGAGAAGGCACTCTTCAGGTGATCTGCACTTATTTAATTTTGTTTGCACTTGCTCTCATCGTCTCATGTTAGGTTTTTCTGGTATATAGATTATTTCATTCTGCTATTGATCCCAACATTTTGTCTGATCACATTCTAAGTGTCACTTTCTGTAATTTTGTTTCAGGGCCTTGAAAACCAAAGGAAATACACCAAAATATGGACTCATATTCCATTCTTCTTTCATTGGCCGTGCCTCTGCTCGTAATAAAGGTCGAATGGCTCGTTATCTTGCAAACAAGTGTTCTATTG-CTTCTC-GTCTCG-ACT-GTTTCTTAGGTTAGTCTCTGCAAGACCGGAGGCAAACATTTAATCATTTCATTACCCAGTGGTTTTGTGTTTCTTTTGTTTTTGTTTTTCACTTCACTTCCCATATTTATCCACAG-ATAAGAGTACTACTACTTTTGGAGAGAAACT</genome_strand>
        <mrna_strand>GGCATTTCCCAGAGTTGGTCAAGATTGTCAATGACAATTATCTATATGCCAAGGTTGCAAAATTCGTTGATGACAAATCCCAATTGTCTGAAGACAAAATTTCAGCATTAACTGAAATAGTCGGAGATGAAGATAAAGCAAAAGAAATCGTAGAAGCTGCAAAAGCTTCCATGG..........................................................................GCCAGGATTTGTCACCAGTTGACTTGATTAATGTCAAGCTATTTGCACAGAGGGTAATGGACCTTGGTTGAATACAGGAAGAATCTTTATGATTATCTTGTCGCCAAAATGCACGACATAGCACCAAATTTGGCTGCTCTGATTGGTGAAGTCGTGGGTGCTCGTTTAATTTCCCATGCTGGTAGTCTCACAAATTTGGCAAAGTGCCCTTCTTCTACCCTTCAGATCCTGGGTGCTGAGAAGGCACTCTTCAG....................................................................................................................................................GGCCTTGAAAACCAAA-GAAATACACCAAAATATGGACTCATATTCCATTCTTCTTTCATTGGCCGTGCCTCTGCTCGTAATAAAGGTCGAATGGCTCGTTATCTTGCAAACAAGTGTTCTATTGCCTTCTCGGTCTCGAACTGGTTTCTTAG...........................................................................................................GATTAGAGTACTACTACTTTTGGAGAGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210368" ref_strand="+" ref_description="SGN-E210368 [cLEC-35-B20]">
      <seq>tggtcaagattgtcaatgacaactatctatatgccaaggttgcaaaatttgttgatgacaaatctcaattgtctgaagacaaaatttcagcattaactgaaatagtcggagatgaagataaagcaaaagaaatcgtagaagctgcaaaagcttccatgggccaggatttgtcaccagttgacttgattaatgtcaagctatttgcacagagggtaatggaccttgttgaatacaggaaaaatctttatgattatcttgtcgccaaaatgcacgacatagcaccaaatttggctgctctgattggtgaagttgtgggtgctcgtttaatttctcatgctggtagtctcacaaatttggcgaagtgcccttcttctacccttcagatcctgggtgctgagaaggcactcttcagggccttgaaaaccaaaggaaatacaccaaaatatggactcatattccattcttctttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="35524" stop="34230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35224" g_stop="35066" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35065" i_stop="34992" i_length="74">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34991" g_stop="34739" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="412" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34738" i_stop="34591" i_length="148">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34590" g_stop="34530" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="473" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E210368" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35224" e_stop="35066"/>
          <exon e_start="34991" e_stop="34739"/>
          <exon e_start="34590" e_stop="34530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACTGAAATAGTCGGAGATGAAGATAAAGCAAAAGAAATCGTAGAAGCTGCAAAAGCTTCCATGGGTATGATATTATCCTTTCTCAAGTCATTGATGGGTGCTCATTCCTTCTTCTAACGTTTTGGTTCTAATTCCCAGGCCAGGATTTGTCACCAGTTGACTTGATTAATGTCAAGCTATTTGCACAGAGGGTAATGGACCTTGTTGAATACAGGAAAAATCTTTATGATTATCTTGTCGCCAAAATGCACGACATAGCACCAAATTTGGCTGCTCTGATTGGTGAAGTTGTGGGTGCTCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTGGCGAAGTGCCCTTCTTCTACCCTTCAGATCCTGGGTGCTGAGAAGGCACTCTTCAGGTGATCTGCACTTATTTAATTTTGTTTGCACTTGCTCTCATCGTCTCATGTTAGGTTTTTCTGGTATATAGATTATTTCATTCTGCTATTGATCCCAACATTTTGTCTGATCACATTCTAAGTGTCACTTTCTGTAATTTTGTTTCAGGGCCTTGAAAACCAAAGGAAATACACCAAAATATGGACTCATATTCCATTCTTCTTTCATT</genome_strand>
        <mrna_strand>TGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACTGAAATAGTCGGAGATGAAGATAAAGCAAAAGAAATCGTAGAAGCTGCAAAAGCTTCCATGG..........................................................................GCCAGGATTTGTCACCAGTTGACTTGATTAATGTCAAGCTATTTGCACAGAGGGTAATGGACCTTGTTGAATACAGGAAAAATCTTTATGATTATCTTGTCGCCAAAATGCACGACATAGCACCAAATTTGGCTGCTCTGATTGGTGAAGTTGTGGGTGCTCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTGGCGAAGTGCCCTTCTTCTACCCTTCAGATCCTGGGTGCTGAGAAGGCACTCTTCAG....................................................................................................................................................GGCCTTGAAAACCAAAGGAAATACACCAAAATATGGACTCATATTCCATTCTTCTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699662" ref_strand="+" ref_description="SGN-E699662 [FA10DD06]">
      <seq>ttatgattggcagagcctaagcttgggtcacatatccatgaagttactaagattccttgccaaagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaaatttgttaaaaaccttaagcctggtgattcggagaaagcccaacttggtctgagtcatagttacagcagagcaaaggtcaagttcaatgtcaaccgtgttgacaatatggtcactcaggcaatagtcctacttgacactcttgataaagatataaatacctttgccatgagagtcagagagtggtactcttggcatttccccgagttggtcaagattgtcaatgacaactatctatatgccaaggttgcaaaatttgttgatgacaaatctcaattgtctgaagacaaaatttcagcattaactgaaatagtcggagatgaagataaagcaaaagaaatcgtagaagctgcaaaagcttccatgggccaggatttgtcaccagttgacttgattaatgtcaagctatttgcacagagggtaatggaccttgttgaatacaggaaaaatctttatgattatcttgtcgccaaaatgcacgacatagcaccaaatttggctgctctgattggtgaagttgtgggtgctcgtttaatttctcatgctggtagtctcacaaatttggcgaagtgcccttcttctacccttcagatcctgggtgctgagaaggcactcttcagggccttgaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="36387" stop="34438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36087" g_stop="35953" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35787" g_stop="35630" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="293" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35629" i_stop="35254" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35253" g_stop="35066" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="481" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35065" i_stop="34992" i_length="74">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34991" g_stop="34739" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="734" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34738" i_stop="34591" i_length="148">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34590" g_stop="34578" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="747" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E699662" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36087" e_stop="35953"/>
          <exon e_start="35787" e_stop="35630"/>
          <exon e_start="35253" e_stop="35066"/>
          <exon e_start="34991" e_stop="34739"/>
          <exon e_start="34590" e_stop="34578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAGGTATGTTTACTCTTTGCCTTATCTAGATCCATGTGTTGTTCGTTTTAACATGCCATTCCATAATCATTTTGGTATTTATATCAAGTTCCATTTTTTATGCTCGGTAGTTTTCAAGTCACATGAATATATGTTTATTCACCTTAGAAGAGAACGTGACACATGCTTGTAATTGCAAGGACAATCTGATGCATGATTTTAACTTCCTGGCCATTTCTCTATCAGTTCAATTTATCTCTGTAACTGATATAGTCATGTATGCCATCCAATGTCCTTACATCTGGATGTCTTTCTGCAATATAGATGAAGTATATGTTTGTTTTGAATGCTGCCCTCCATTTCAGTCCATTTGATTCCTGTCGAATGCTTATTGATGCAGAGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACTGAAATAGTCGGAGATGAAGATAAAGCAAAAGAAATCGTAGAAGCTGCAAAAGCTTCCATGGGTATGATATTATCCTTTCTCAAGTCATTGATGGGTGCTCATTCCTTCTTCTAACGTTTTGGTTCTAATTCCCAGGCCAGGATTTGTCACCAGTTGACTTGATTAATGTCAAGCTATTTGCACAGAGGGTAATGGACCTTGTTGAATACAGGAAAAATCTTTATGATTATCTTGTCGCCAAAATGCACGACATAGCACCAAATTTGGCTGCTCTGATTGGTGAAGTTGTGGGTGCTCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTGGCGAAGTGCCCTTCTTCTACCCTTCAGATCCTGGGTGCTGAGAAGGCACTCTTCAGGTGATCTGCACTTATTTAATTTTGTTTGCACTTGCTCTCATCGTCTCATGTTAGGTTTTTCTGGTATATAGATTATTTCATTCTGCTATTGATCCCAACATTTTGTCTGATCACATTCTAAGTGTCACTTTCTGTAATTTTGTTTCAGGGCCTTGAAAACC</genome_strand>
        <mrna_strand>TTATGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAG.....................................................................................................................................................................CCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................AGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACTGAAATAGTCGGAGATGAAGATAAAGCAAAAGAAATCGTAGAAGCTGCAAAAGCTTCCATGG..........................................................................GCCAGGATTTGTCACCAGTTGACTTGATTAATGTCAAGCTATTTGCACAGAGGGTAATGGACCTTGTTGAATACAGGAAAAATCTTTATGATTATCTTGTCGCCAAAATGCACGACATAGCACCAAATTTGGCTGCTCTGATTGGTGAAGTTGTGGGTGCTCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTGGCGAAGTGCCCTTCTTCTACCCTTCAGATCCTGGGTGCTGAGAAGGCACTCTTCAG....................................................................................................................................................GGCCTTGAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315860" ref_strand="+" ref_description="SGN-E315860 [cTOA-26-O13]">
      <seq>aaacatcgggagagattgagaagtaaaattccatggcgctgtatctgttgtatgagtcggcgtctgggtacggtttgtttttggctcacgggattgatgagatagggcagaacacggaggcggtccggaactcaatcgatgacctcaatcgctttgggaaagttgtaaagattgaagcttttaacccttttgagtccgctcttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaactttttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcacatatccatgaagttactaagattccttgccaaagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaaatttgttaaaaaccttaagcctggtgattcggagaaagcccaacttggtctgagtcatagttacagcagagcaaaggtcaagttcaatgtcaaccgtgttgacaatatggtcactcaggcaatagtcctacttgacactcttgataaagatataaatacctttgccatgagagtcagagagtggtactcttggcatttccccgagttggtncagattgtcaatgacaactatctatatgccaaggttgcaaaatttgttgatgacaaatctncattgtctgaagacaaatttcagcatttactgaaatagtcggagatgaagataagcaaagaaatcgtagaagctgcaaagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37287" stop="34771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36987" g_stop="36751" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="35953" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="452" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35787" g_stop="35630" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="610" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35629" i_stop="35254" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.539" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35253" g_stop="35071" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="789" r_length="179" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E315860" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36987" e_stop="36751"/>
          <exon e_start="36167" e_stop="35953"/>
          <exon e_start="35787" e_stop="35630"/>
          <exon e_start="35253" e_stop="35071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAGGTATGTTTACTCTTTGCCTTATCTAGATCCATGTGTTGTTCGTTTTAACATGCCATTCCATAATCATTTTGGTATTTATATCAAGTTCCATTTTTTATGCTCGGTAGTTTTCAAGTCACATGAATATATGTTTATTCACCTTAGAAGAGAACGTGACACATGCTTGTAATTGCAAGGACAATCTGATGCATGATTTTAACTTCCTGGCCATTTCTCTATCAGTTCAATTTATCTCTGTAACTGATATAGTCATGTATGCCATCCAATGTCCTTACATCTGGATGTCTTTCTGCAATATAGATGAAGTATATGTTTGTTTTGAATGCTGCCCTCCATTTCAGTCCATTTGATTCCTGTCGAATGCTTATTGATGCAGAGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACTGAAATAGTCGGAGATGAAGATAAAGCAAAAGAAATCGTAGAAGCTGCAAAAGCTTC</genome_strand>
        <mrna_strand>AAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAG.....................................................................................................................................................................CCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................AGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTNCAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTNCATTGTCTGAAGAC-AAATTTCAGCATTTACTGAAATAGTCGGAGATGAAGAT-AAGC-AAAGAAATCGTAGAAGCTGC-AAAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454719" ref_strand="+" ref_description="SGN-E454719 [cSTS-24-M9]">
      <seq>gagaagtgaaattccatggcactgtatctattgtatgagtcggcgtctgggtacggtttgtttttggctcacgggattgatgagatagggcagaacacggaggcggttcggaactcaatcactgacctcaatcgctttgggaaagtcgtaaagcttgaagcttttaacccttttgagtctgcccttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaacttcttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcacatatccatgaagtaactaagattccttgccaaagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaagttcattgaaaacctaaagcatggtgatttggagaaagcccaacttggtctgagtcacagttacagcagagcaaaggtcaagttcaatgtcaatcgtgttgacaatatggttactcaggcaattgtcctacttgatactcttgataaagatataaataccttttccatgagagtcagagagtggtactcttggcatttcccagagttggtcaagattgtcaatgacaattatctatatgccaaggttgcaaaattcgttgatgacaaatcccaattgtctgaagacaaaatttcagcattaactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37270" stop="34824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36970" g_stop="36751" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="35953" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="435" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35787" g_stop="35630" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="593" r_length="158" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35629" i_stop="35254" i_length="376">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.539" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35253" g_stop="35124" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="723" r_length="130" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E454719" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36970" e_stop="36751"/>
          <exon e_start="36167" e_stop="35953"/>
          <exon e_start="35787" e_stop="35630"/>
          <exon e_start="35253" e_stop="35124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAGGTATGTTTACTCTTTGCCTTATCTAGATCCATGTGTTGTTCGTTTTAACATGCCATTCCATAATCATTTTGGTATTTATATCAAGTTCCATTTTTTATGCTCGGTAGTTTTCAAGTCACATGAATATATGTTTATTCACCTTAGAAGAGAACGTGACACATGCTTGTAATTGCAAGGACAATCTGATGCATGATTTTAACTTCCTGGCCATTTCTCTATCAGTTCAATTTATCTCTGTAACTGATATAGTCATGTATGCCATCCAATGTCCTTACATCTGGATGTCTTTCTGCAATATAGATGAAGTATATGTTTGTTTTGAATGCTGCCCTCCATTTCAGTCCATTTGATTCCTGTCGAATGCTTATTGATGCAGAGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACTGAA</genome_strand>
        <mrna_strand>GAGAAGTGAAATTCCATGGCACTGTATCTATTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTTCGGAACTCAATCACTGACCTCAATCGCTTTGGGAAAGTCGTAAAGCTTGAAGCTTTTAACCCTTTTGAGTCTGCCCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTCTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTAACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAGTTCATTGAAAACCTAAAG.....................................................................................................................................................................CATGGTGATTTGGAGAAAGCCCAACTTGGTCTGAGTCACAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAATCGTGTTGACAATATGGTTACTCAGGCAATTGTCCTACTTGATACTCTTGATAAAGATATAAATACCTTTTCCATGAGAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................AGAGTGGTACTCTTGGCATTTCCCAGAGTTGGTCAAGATTGTCAATGACAATTATCTATATGCCAAGGTTGCAAAATTCGTTGATGACAAATCCCAATTGTCTGAAGACAAAATTTCAGCATTAACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328996" ref_strand="+" ref_description="SGN-E328996 [cTOC-24-I15]">
      <seq>cttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaactttttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcgcatatccatgaagttactaagattccttgccacagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaaatttgctaaaaaccttaagcctggtgattcggagaaagcccaacttggtctgagtcatagttacagcagagcaaaggtcaagttcaatgtcgaccgtgttgacaatatggtcactcatgcaatagtcctacttgacactcttgataaagatataaatacctttgccatgagagtcagagagtggtactcttggcatttccccgagttggtcaagattgtcaatgacaactatctatatgccaaggttgcaaaatttgttgatgacaaatctcaattgtctgaagacaaaatttcagcattaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37087" stop="34826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36787" g_stop="36751" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="35953" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="252" r_length="215" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35787" g_stop="35630" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="410" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35629" i_stop="35254" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35253" g_stop="35126" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="538" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E328996" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36787" e_stop="36751"/>
          <exon e_start="36167" e_stop="35953"/>
          <exon e_start="35787" e_stop="35630"/>
          <exon e_start="35253" e_stop="35126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAGGTATGTTTACTCTTTGCCTTATCTAGATCCATGTGTTGTTCGTTTTAACATGCCATTCCATAATCATTTTGGTATTTATATCAAGTTCCATTTTTTATGCTCGGTAGTTTTCAAGTCACATGAATATATGTTTATTCACCTTAGAAGAGAACGTGACACATGCTTGTAATTGCAAGGACAATCTGATGCATGATTTTAACTTCCTGGCCATTTCTCTATCAGTTCAATTTATCTCTGTAACTGATATAGTCATGTATGCCATCCAATGTCCTTACATCTGGATGTCTTTCTGCAATATAGATGAAGTATATGTTTGTTTTGAATGCTGCCCTCCATTTCAGTCCATTTGATTCCTGTCGAATGCTTATTGATGCAGAGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACTG</genome_strand>
        <mrna_strand>CTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCGCATATCCATGAAGTTACTAAGATTCCTTGCCACAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGCTAAAAACCTTAAG.....................................................................................................................................................................CCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCGACCGTGTTGACAATATGGTCACTCATGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................AGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335421" ref_strand="+" ref_description="SGN-E335421 [cTOE-2-L11]">
      <seq>ttgagcaaacatcgggagagattgagaagtaaaattccatggcgctgtatctgttgtatgagtcggcgtctgggtacggtttgtttttggctcacgggattgatgagatagggcagaacacggaggcggtccggaactcaatcgatgacctcaatcgctttgggaaagttgtaaagattgaagcttttaacccttttgagtccgctcttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaactttttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcacatatccatgaagttactaagattccttgccaaagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaaatttgttaaaaaccttaagcctggtgattcggagaaagcccaacttggtctgagtcatagttacagcagagcaaaggtcaagttcaatgtcaaccgtgttgacaatatggtcactcaggcaatagtcctacttgacactcttgataaagatataaatacctttgccatgagagtcagagagtggtactcttggcatttccccgagttggtcaagattgtcaatgacaactatctatatgccaaggttgcaaaatttgttgatgaccaatctcaattgtctgaagacaaaatttcagcattaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37293" stop="34827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36993" g_stop="36751" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="35953" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="458" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35787" g_stop="35630" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="616" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35629" i_stop="35254" i_length="376">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.539" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35253" g_stop="35127" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="743" r_length="127" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E335421" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36993" e_stop="36751"/>
          <exon e_start="36167" e_stop="35953"/>
          <exon e_start="35787" e_stop="35630"/>
          <exon e_start="35253" e_stop="35127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAGGTATGTTTACTCTTTGCCTTATCTAGATCCATGTGTTGTTCGTTTTAACATGCCATTCCATAATCATTTTGGTATTTATATCAAGTTCCATTTTTTATGCTCGGTAGTTTTCAAGTCACATGAATATATGTTTATTCACCTTAGAAGAGAACGTGACACATGCTTGTAATTGCAAGGACAATCTGATGCATGATTTTAACTTCCTGGCCATTTCTCTATCAGTTCAATTTATCTCTGTAACTGATATAGTCATGTATGCCATCCAATGTCCTTACATCTGGATGTCTTTCTGCAATATAGATGAAGTATATGTTTGTTTTGAATGCTGCCCTCCATTTCAGTCCATTTGATTCCTGTCGAATGCTTATTGATGCAGAGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACT</genome_strand>
        <mrna_strand>TTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAG.....................................................................................................................................................................CCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................AGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACCAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451690" ref_strand="+" ref_description="SGN-E451690 [cSTS-13-P2]">
      <seq>ttgtatgagtcggcgtctgggtaccggtttgtttttggctcacgggcttgatgagctagggcagaacacggaggcggttcggaactcaatcactgacctcaatcgctttgggaaaagtcgtaaagcttgaagcttttaacccttttgagtctgcccttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaacttcttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcacatatccatgaagtaactaagattccttgccaaagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaagttcattgaaaacctaaagcatggtgatttggagaaagcccaacttggtctgagtcacagttacagcagagcaaaggtcaagttcaatgtcaatcgtgttgacaatatggttactcaggcaattgtcctacttgatactcttgataaagatataaataccttttccatgagagtcagagagtggtactcttggcatttcccagagttggtcaagattgtcaatgacaattatctatatgccaaggttgcaaaattcgttgatgacaaatcccaattgtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37240" stop="34849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36940" g_stop="36751" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="35953" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="407" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35787" g_stop="35630" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="565" r_length="158" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35629" i_stop="35254" i_length="376">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.539" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35253" g_stop="35149" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="670" r_length="105" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E451690" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36940" e_stop="36751"/>
          <exon e_start="36167" e_stop="35953"/>
          <exon e_start="35787" e_stop="35630"/>
          <exon e_start="35253" e_stop="35149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATGAGTCGGCGTCTGGGTA-CGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGG-AAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAGGTATGTTTACTCTTTGCCTTATCTAGATCCATGTGTTGTTCGTTTTAACATGCCATTCCATAATCATTTTGGTATTTATATCAAGTTCCATTTTTTATGCTCGGTAGTTTTCAAGTCACATGAATATATGTTTATTCACCTTAGAAGAGAACGTGACACATGCTTGTAATTGCAAGGACAATCTGATGCATGATTTTAACTTCCTGGCCATTTCTCTATCAGTTCAATTTATCTCTGTAACTGATATAGTCATGTATGCCATCCAATGTCCTTACATCTGGATGTCTTTCTGCAATATAGATGAAGTATATGTTTGTTTTGAATGCTGCCCTCCATTTCAGTCCATTTGATTCCTGTCGAATGCTTATTGATGCAGAGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGA</genome_strand>
        <mrna_strand>TTGTATGAGTCGGCGTCTGGGTACCGGTTTGTTTTTGGCTCACGGGCTTGATGAGCTAGGGCAGAACACGGAGGCGGTTCGGAACTCAATCACTGACCTCAATCGCTTTGGGAAAAGTCGTAAAGCTTGAAGCTTTTAACCCTTTTGAGTCTGCCCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTCTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTAACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAGTTCATTGAAAACCTAAAG.....................................................................................................................................................................CATGGTGATTTGGAGAAAGCCCAACTTGGTCTGAGTCACAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAATCGTGTTGACAATATGGTTACTCAGGCAATTGTCCTACTTGATACTCTTGATAAAGATATAAATACCTTTTCCATGAGAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................AGAGTGGTACTCTTGGCATTTCCCAGAGTTGGTCAAGATTGTCAATGACAATTATCTATATGCCAAGGTTGCAAAATTCGTTGATGACAAATCCCAATTGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444962" ref_strand="+" ref_description="SGN-E444962 [cSTA-44-I22]">
      <seq>cttccgctacacttgagcaaacatcgggagagattgagaagtgaaattccatggcactgtatctattgtatgagtcggcgtctgggtacggtttgtttttggctcacgggattgatgagatagggcagaacacggaggcggttcggaactcaatcactgacctcaatcgctttgggaaagtcgtaaagcttgaagcttttaacccttttgagtctgcccttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaacttcttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcacatatccatgaagtaactaagattccttgccaaagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaagttcattgaaaacctaaagcatggtgatttggagaaagcccaacttggtctgagtcacagttacagcagagcaaaggtcaagttcaatgtcaatcgtgttgacaatatggttactcaggcaattgtcctacttgatactcttgataaagatataaataccttttccatgagagtcagagagtggtactcttggcatttcccagagttggtcaagattgtcaatgacaattatctatatgccaaggttgcanaattcgttgatgacaaatcccaattgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37305" stop="34850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37005" g_stop="36751" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="35953" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="470" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35787" g_stop="35630" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="628" r_length="158" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35629" i_stop="35254" i_length="376">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.539" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35253" g_stop="35150" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="732" r_length="104" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E444962" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37005" e_stop="36751"/>
          <exon e_start="36167" e_stop="35953"/>
          <exon e_start="35787" e_stop="35630"/>
          <exon e_start="35253" e_stop="35150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCGCTACAATTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAGGTATGTTTACTCTTTGCCTTATCTAGATCCATGTGTTGTTCGTTTTAACATGCCATTCCATAATCATTTTGGTATTTATATCAAGTTCCATTTTTTATGCTCGGTAGTTTTCAAGTCACATGAATATATGTTTATTCACCTTAGAAGAGAACGTGACACATGCTTGTAATTGCAAGGACAATCTGATGCATGATTTTAACTTCCTGGCCATTTCTCTATCAGTTCAATTTATCTCTGTAACTGATATAGTCATGTATGCCATCCAATGTCCTTACATCTGGATGTCTTTCTGCAATATAGATGAAGTATATGTTTGTTTTGAATGCTGCCCTCCATTTCAGTCCATTTGATTCCTGTCGAATGCTTATTGATGCAGAGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTG</genome_strand>
        <mrna_strand>CTTCCGCTACACTTGAGCAAACATCGGGAGAGATTGAGAAGTGAAATTCCATGGCACTGTATCTATTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTTCGGAACTCAATCACTGACCTCAATCGCTTTGGGAAAGTCGTAAAGCTTGAAGCTTTTAACCCTTTTGAGTCTGCCCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTCTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTAACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAGTTCATTGAAAACCTAAAG.....................................................................................................................................................................CATGGTGATTTGGAGAAAGCCCAACTTGGTCTGAGTCACAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAATCGTGTTGACAATATGGTTACTCAGGCAATTGTCCTACTTGATACTCTTGATAAAGATATAAATACCTTTTCCATGAGAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................AGAGTGGTACTCTTGGCATTTCCCAGAGTTGGTCAAGATTGTCAATGACAATTATCTATATGCCAAGGTTGCANAATTCGTTGATGACAAATCCCAATTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E601876" ref_strand="+" ref_description="SGN-E601876 [54926]">
      <seq>ctcttccgctacacttgagcaaacatcgggagagattgagaagtgaaattccatggcactgtatctattgtatgagtcggcgtctgggtacggtttgtttttggctcacgggattgatgagatagggcagaacacggaggcggttcggaactcaatcactgacctcaatcgctttgggaaagtcgtaaagcttgaagcttttaacccttttgagtctgcccttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaacttcttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcacatatccatgaagtaactaagattccttgccaaagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaagttcattgaaaacctaaagcatggtgatttggagaaagcccaacttggtctgagtcacagttacagcagagcaaaggtcaagttcaatgtcaatcgtgttgacaatatggttactcaggcaattgtcctacttgatactcttgataaagatataaataccttttccatgagagtcagagagtggtactcttggcatttcccagagttggtcaagcattgtcaatgacaattatctatatgccaacggttgcaaacattcgtttgatgaccanatccccaattgtctgaaagaccacaattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37307" stop="34836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37007" g_stop="36751" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="35953" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="472" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35787" g_stop="35630" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="630" r_length="158" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35629" i_stop="35254" i_length="376">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.539" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35253" g_stop="35187" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="698" r_length="68" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E601876" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37007" e_stop="36751"/>
          <exon e_start="36167" e_stop="35953"/>
          <exon e_start="35787" e_stop="35630"/>
          <exon e_start="35253" e_stop="35187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCGCTACAATTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAGGTATGTTTACTCTTTGCCTTATCTAGATCCATGTGTTGTTCGTTTTAACATGCCATTCCATAATCATTTTGGTATTTATATCAAGTTCCATTTTTTATGCTCGGTAGTTTTCAAGTCACATGAATATATGTTTATTCACCTTAGAAGAGAACGTGACACATGCTTGTAATTGCAAGGACAATCTGATGCATGATTTTAACTTCCTGGCCATTTCTCTATCAGTTCAATTTATCTCTGTAACTGATATAGTCATGTATGCCATCCAATGTCCTTACATCTGGATGTCTTTCTGCAATATAGATGAAGTATATGTTTGTTTTGAATGCTGCCCTCCATTTCAGTCCATTTGATTCCTGTCGAATGCTTATTGATGCAGAGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTCAAG-ATTGTCAATGACAACTATCTATATGCCAAG</genome_strand>
        <mrna_strand>CTCTTCCGCTACACTTGAGCAAACATCGGGAGAGATTGAGAAGTGAAATTCCATGGCACTGTATCTATTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTTCGGAACTCAATCACTGACCTCAATCGCTTTGGGAAAGTCGTAAAGCTTGAAGCTTTTAACCCTTTTGAGTCTGCCCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTCTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTAACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAGTTCATTGAAAACCTAAAG.....................................................................................................................................................................CATGGTGATTTGGAGAAAGCCCAACTTGGTCTGAGTCACAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAATCGTGTTGACAATATGGTTACTCAGGCAATTGTCCTACTTGATACTCTTGATAAAGATATAAATACCTTTTCCATGAGAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................AGAGTGGTACTCTTGGCATTTCCCAGAGTTGGTCAAGCATTGTCAATGACAATTATCTATATGCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456419" ref_strand="+" ref_description="SGN-E456419 [cSTS-29-O24]">
      <seq>cttgagcaaacatcgggagagattgagaagtgaaattccatggcactgtatctattgtatgagtcggcgtctgggtacggtttgtttttggctcacgggattgatgagatagggcagaacacggaggcggttcggaactcaatcactgacctcaatcgctttgggaaagtcgtaaagcttgaagcttttaacccttttgagtctgcccttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaacttcttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcacatatccatgaagtaactaagattccttgccaaagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaagttcattgaaaacctaaagcatggtgatttggagaaagcccaacttggtctgagtcacagttacagcagagcaaaggtcaagttcaatgtcaatcgtgttgacaatatggttactcangcaattgtcctacttgatactcttgataaagatataaataccttttccatgagagtcagagagtggtactcttggcatttcccagagttggtcaagattgtcaatgacaattatctatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37293" stop="34891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36994" g_stop="36751" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="35953" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="459" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35787" g_stop="35630" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="617" r_length="158" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35629" i_stop="35254" i_length="376">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.539" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35253" g_stop="35191" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="680" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E456419" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36994" e_stop="36751"/>
          <exon e_start="36167" e_stop="35953"/>
          <exon e_start="35787" e_stop="35630"/>
          <exon e_start="35253" e_stop="35191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAGGTATGTTTACTCTTTGCCTTATCTAGATCCATGTGTTGTTCGTTTTAACATGCCATTCCATAATCATTTTGGTATTTATATCAAGTTCCATTTTTTATGCTCGGTAGTTTTCAAGTCACATGAATATATGTTTATTCACCTTAGAAGAGAACGTGACACATGCTTGTAATTGCAAGGACAATCTGATGCATGATTTTAACTTCCTGGCCATTTCTCTATCAGTTCAATTTATCTCTGTAACTGATATAGTCATGTATGCCATCCAATGTCCTTACATCTGGATGTCTTTCTGCAATATAGATGAAGTATATGTTTGTTTTGAATGCTGCCCTCCATTTCAGTCCATTTGATTCCTGTCGAATGCTTATTGATGCAGAGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGC</genome_strand>
        <mrna_strand>CTTGAGCAAACATCGGGAGAGATTGAGAAGTGAAATTCCATGGCACTGTATCTATTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTTCGGAACTCAATCACTGACCTCAATCGCTTTGGGAAAGTCGTAAAGCTTGAAGCTTTTAACCCTTTTGAGTCTGCCCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTCTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTAACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAGTTCATTGAAAACCTAAAG.....................................................................................................................................................................CATGGTGATTTGGAGAAAGCCCAACTTGGTCTGAGTCACAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAATCGTGTTGACAATATGGTTACTCANGCAATTGTCCTACTTGATACTCTTGATAAAGATATAAATACCTTTTCCATGAGAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................AGAGTGGTACTCTTGGCATTTCCCAGAGTTGGTCAAGATTGTCAATGACAATTATCTATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453169" ref_strand="+" ref_description="SGN-E453169 [cSTS-19-I21]">
      <seq>cttgagcaaacatcgggagagattgagaagtgaaattccatggcactgtatctattgtatgagtcggcgtctgggtacggtttgtttttggctcacgggattgatgagatagggcagaacacggaggcggttcggaactcaatcactgacctcaatcgctttgggaaagtcgtaaagcttgaagcttttaacccttttgagtctgcccttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaacttcttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcacatatccatgaagtaactaagattccttgccaaagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaagttcattgaaaacctaaagcatggtgatttggagaaagcccaacttggtctgagtcacagttacagcagagcaaaggtcaagttcaatgtcaatcgtgttgacaatatggttactcangcaattgtcctacttgatactcttgataaagatataaataccttttccatgagagtcagagagtggtactcttggcatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37293" stop="35307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36994" g_stop="36751" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="35953" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="459" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35787" g_stop="35630" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="617" r_length="158" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E453169" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36994" e_stop="36751"/>
          <exon e_start="36167" e_stop="35953"/>
          <exon e_start="35787" e_stop="35630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAG</genome_strand>
        <mrna_strand>CTTGAGCAAACATCGGGAGAGATTGAGAAGTGAAATTCCATGGCACTGTATCTATTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTTCGGAACTCAATCACTGACCTCAATCGCTTTGGGAAAGTCGTAAAGCTTGAAGCTTTTAACCCTTTTGAGTCTGCCCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTCTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTAACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAGTTCATTGAAAACCTAAAG.....................................................................................................................................................................CATGGTGATTTGGAGAAAGCCCAACTTGGTCTGAGTCACAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAATCGTGTTGACAATATGGTTACTCANGCAATTGTCCTACTTGATACTCTTGATAAAGATATAAATACCTTTTCCATGAGAGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467488" ref_strand="+" ref_description="SGN-E467488 [cSTB-49-I23]">
      <seq>agagattgagaagtgaaattccatggcactgtatctattgtatgagtcggcgtctgggtaccggtttgtttttggctcacgggattgatgagatagggcagaacacggaggcggttcggaactcaatcactgacctcaatcgctttgggaaagtcgtaaagcttgaagcttttaacccttttgagtctgcccttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaacttcttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcacatatccatgaagtaactaagattccttgccaaagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaagttcattgaaaacctaaagcatggtgatttggagaaagcccaacttggtctgagtcacagttacagcagagcaaaggtcaagttcaatgtcaatcgtgttgacaatatggttactcaggcaattgtcctacttgatactcttgataaagatataaataccttttccatgagagtcagagagtggtactcttggcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37277" stop="35307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36977" g_stop="36751" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="35953" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="443" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35787" g_stop="35630" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="601" r_length="158" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E467488" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36977" e_stop="36751"/>
          <exon e_start="36167" e_stop="35953"/>
          <exon e_start="35787" e_stop="35630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTA-CGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAG</genome_strand>
        <mrna_strand>AGAGATTGAGAAGTGAAATTCCATGGCACTGTATCTATTGTATGAGTCGGCGTCTGGGTACCGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTTCGGAACTCAATCACTGACCTCAATCGCTTTGGGAAAGTCGTAAAGCTTGAAGCTTTTAACCCTTTTGAGTCTGCCCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTCTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTAACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAGTTCATTGAAAACCTAAAG.....................................................................................................................................................................CATGGTGATTTGGAGAAAGCCCAACTTGGTCTGAGTCACAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAATCGTGTTGACAATATGGTTACTCAGGCAATTGTCCTACTTGATACTCTTGATAAAGATATAAATACCTTTTCCATGAGAGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446173" ref_strand="+" ref_description="SGN-E446173 [cSTA-20-O21]">
      <seq>ccaaaagtcaaggagggtaagaaagctaagtggagcttaggattggcagagcctaagcttgggtcacatatccatgaagtaactaagattccttgccaaagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaagttcattgaaaacctaaagcatggtgatttggagaaagcccaacttggtctgagtcacagttacagcagagcaaaggtcaagttcaatgtcaatcgtgttgacaatatggttactcaggcaattgtcctacttgatactcttgataaagatataaataccttttccatgagagtcagagagtggtactcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="36423" stop="35314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36123" g_stop="35953" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35787" g_stop="35630" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="329" r_length="158" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E446173" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36123" e_stop="35953"/>
          <exon e_start="35787" e_stop="35630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAG</genome_strand>
        <mrna_strand>CCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTGGAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTAACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAGTTCATTGAAAACCTAAAG.....................................................................................................................................................................CATGGTGATTTGGAGAAAGCCCAACTTGGTCTGAGTCACAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAATCGTGTTGACAATATGGTTACTCAGGCAATTGTCCTACTTGATACTCTTGATAAAGATATAAATACCTTTTCCATGAGAGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335134" ref_strand="+" ref_description="SGN-E335134 [cTOE-1-G22]">
      <seq>gagggttctcttccgctacaattgagcaaacatcgggagagattgagaagtaaaattccatggcgctgtatctgttgtatgagtcggcgtctgggtaccggtttgtttttggctcacgggattgatgagatagggcagaacacggaggcggtccggaactcaatcgatgacctcaatcgctttgggaaagttgtaaagattgaagcttttaacccttttgagtccgctcttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaactttttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcacatatccatgaagttactaagattccttgccaaagtaacgagtttgttcttgagattntgcgtggagtacgattgcattttgagaaatttgttaaaaaccttaagcctggtgattcggagaaagcccaacttggtctgagtcatagttacagcagagcaaaggtcaagttcaatgtcaaccgtgttgacaatatggtcactcanngcatagtcctacttgacactcttgataaagatataaataccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37312" stop="35344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37014" g_stop="36751" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="35953" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="480" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35787" g_stop="35644" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="624" r_length="144" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E335134" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37014" e_stop="36751"/>
          <exon e_start="36167" e_stop="35953"/>
          <exon e_start="35787" e_stop="35644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGTTCTCTTCCGCTACAATTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTA-CGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTT</genome_strand>
        <mrna_strand>GAGGGTTCTCTTCCGCTACAATTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACCGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTNTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAG.....................................................................................................................................................................CCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCANNGCATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476050" ref_strand="+" ref_description="SGN-E476050 [cSTB-43-M1]">
      <seq>cttgagcaaacatcgggagagattgagaagtgaaattccatggcactgtatctattgtatgagtcggcgtctgggtacggtttgtttttggctcacgggattgatgagatagggcagaacacggaggcggctcggaactcaatcactgacctcaatcgctttgggaaagtcgtaaagcttgaagcttttaacccttttgagtctgcccttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaacttcttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcacatatccatgaagtaactaagattccttgccaaagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaagttcattgaaaacctaaagcatggtgatttggagaaagcccaacttggtctgagtcacagttacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37293" stop="35440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36994" g_stop="36751" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="35953" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="459" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35787" g_stop="35740" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="507" r_length="48" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E476050" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36994" e_stop="36751"/>
          <exon e_start="36167" e_stop="35953"/>
          <exon e_start="35787" e_stop="35740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGC</genome_strand>
        <mrna_strand>CTTGAGCAAACATCGGGAGAGATTGAGAAGTGAAATTCCATGGCACTGTATCTATTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGCTCGGAACTCAATCACTGACCTCAATCGCTTTGGGAAAGTCGTAAAGCTTGAAGCTTTTAACCCTTTTGAGTCTGCCCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTCTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTAACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAGTTCATTGAAAACCTAAAG.....................................................................................................................................................................CATGGTGATTTGGAGAAAGCCCAACTTGGTCTGAGTCACAGTTACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445864" ref_strand="+" ref_description="SGN-E445864 [cSTA-19-G17]">
      <seq>ctcttccgctacacttgagcaaacatcgggagagattgagaagtgaaattccatggcactgtatctattgtatgagtcggcgtctgggtacggtttgtttttggctcacgggattgatgagatagggcagaacacggaggcggttcggaactcaatcactgacctcaatcgctttgggaaagtcgtaaagcttgaagcttttaacccttttgagtctgcccttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaacttcttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcacatatccatgaagtaactaagattccttgccaaagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaagttcattgaaaacctaaagcatggtgatttggagaaagcccaacttggtctgagtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37307" stop="35450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37007" g_stop="36751" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="35953" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="472" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35787" g_stop="35749" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="511" r_length="39" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E445864" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37007" e_stop="36751"/>
          <exon e_start="36167" e_stop="35953"/>
          <exon e_start="35787" e_stop="35749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCGCTACAATTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCAT</genome_strand>
        <mrna_strand>CTCTTCCGCTACACTTGAGCAAACATCGGGAGAGATTGAGAAGTGAAATTCCATGGCACTGTATCTATTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTTCGGAACTCAATCACTGACCTCAATCGCTTTGGGAAAGTCGTAAAGCTTGAAGCTTTTAACCCTTTTGAGTCTGCCCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTCTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTAACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAGTTCATTGAAAACCTAAAG.....................................................................................................................................................................CATGGTGATTTGGAGAAAGCCCAACTTGGTCTGAGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446060" ref_strand="+" ref_description="SGN-E446060 [cSTA-19-H12]">
      <seq>ctcttccgctacacttgagcaaacatcgggagagattgagaagtgaaattccatggcactgtatctactgtatgagtcggcgtctgggtacggtttgtttttggctcacgggattgatgagatagggcagaacacggaggcggttcggaactcaatcactgacctcaatcgctttgggaaagtcgtaaagcttgaagcttttaacccttttgagtctgcccttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaacttcttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcacatatccatgaagtaactaagattccttgccaaagtaacgagtttgttcttgagattttgcgtggagtacgattgcattttgagaagttcattgaaaacctaaagcatggtgatttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37307" stop="35647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37007" g_stop="36751" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="35953" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="472" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35787" g_stop="35773" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="487" r_length="15" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E446060" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37007" e_stop="36751"/>
          <exon e_start="36167" e_stop="35953"/>
          <exon e_start="35787" e_stop="35773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCGCTACAATTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAGGTTTGTTCCTTCATTCACTTACCAAACAGTTTATATTTGCGATATTCCACATTTTGTTTTTTGCATGATTATTTTACATGTGGCAGTCATATTTATGTATCTGAAAAGTTTGAAAACATCTTCAGATAGTTGAATTTTTACTTGATTCTTTTGAACCTCTTGTAGCCTGGTGATTCGGAG</genome_strand>
        <mrna_strand>CTCTTCCGCTACACTTGAGCAAACATCGGGAGAGATTGAGAAGTGAAATTCCATGGCACTGTATCTACTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTTCGGAACTCAATCACTGACCTCAATCGCTTTGGGAAAGTCGTAAAGCTTGAAGCTTTTAACCCTTTTGAGTCTGCCCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTCTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTAACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAGTTCATTGAAAACCTAAAG.....................................................................................................................................................................CATGGTGATTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444963" ref_strand="+" ref_description="SGN-E444963 [cSTA-44-I22]">
      <seq>cttccgctacacttgagcaaacatcgggagagattgagaagtgaaattccatggcactgtatctattgtatgagtcggcgtctgggtacggtttgtttttggctcacgggattgatgagatagggcagaacacggaggcggttcggaactcaatcactgacctcaatcgctttgggaaagtcgtaaagcttgaagcttttaacccttttgagtctgcccttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaacttcttggagcgtagtctcccaaaagtcaaggagggtaagaaagctaagttcagcttaggattggcagagcctaagcttgggtcacatatccatgaagtaactaagattccttgccaaagtaacgagtttgttcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37305" stop="35705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37005" g_stop="36751" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="36005" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="418" r_length="163" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E444963" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37005" e_stop="36751"/>
          <exon e_start="36167" e_stop="36005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCGCTACAATTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGA</genome_strand>
        <mrna_strand>CTTCCGCTACACTTGAGCAAACATCGGGAGAGATTGAGAAGTGAAATTCCATGGCACTGTATCTATTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTTCGGAACTCAATCACTGACCTCAATCGCTTTGGGAAAGTCGTAAAGCTTGAAGCTTTTAACCCTTTTGAGTCTGCCCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTCTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTAACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440617" ref_strand="+" ref_description="SGN-E440617 [cSTA-17-F24]">
      <seq>cccgctacacttgagcaaacatcgggagagattgagaagtgaaattccatggcactgtatctattgtatgagtcggcgtctgggtacggtttgtttttggctcacgggattgatgagatagggcagaacacggaggcggttcggaactcaatcactgacctcaatcgctttgggaaagtcgtaaagcttgaagcttttaacccttttgagtctgcccttgatgccctaaatcaatgcaatgctgtttctgaaggtcaaatgactgaggagctacagaacttcttggagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="37302" stop="35831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37003" g_stop="36751" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36167" g_stop="36131" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="290" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E440617" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37003" e_stop="36751"/>
          <exon e_start="36167" e_stop="36131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCTACAATTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAGGTCAGCTAGTGTAAATTTTGCTAATGACATTTGTTTACTTTTTTTTTTTTTGTGTGTACAAGTTTTTATGAATATGAGGTCTGCATGTGCGGTTTTAGCGAATTCATTTTAATGGACTTTCAGGTTGTTATAGTTTTGGCCGAGTTAGTGACATGAGGTCTGCATGTGCGTTTGTGGTTTCTTTGAAGTAATTCTTTCCCGTTGTTACAAATTCCAAGATTTCCAAGATTTTCAGACTGTCATACAATTTTACTTTGACTAAAGGTTATTTTCAATTGGTTGTCTTTTTGCAAGCATTTATGCTTTTTAGAAACCTATTTGAAAGAACTTAGAAGATTAAGTATGTATGATTTACTTTTTATACATCGACAATGTATTTTTAGTGCTGGGAGTATTAATCTACTTTATTCTCCAGGTAACCAATCCACATTTACTATTGGTACTCGCTTTTATGTAACTTGCTAAGTGTTGAAATTCTGAGAAATGTGGTTGCAGCAATCATCTGTCAGGGCGAGCTAGTTTTCATTTTATTGCGTTGTTTGAGTTTATTGTTCTGAATGGATTTTTGGAATTGGGTTTACAGGTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCG</genome_strand>
        <mrna_strand>CCCGCTACACTTGAGCAAACATCGGGAGAGATTGAGAAGTGAAATTCCATGGCACTGTATCTATTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTTCGGAACTCAATCACTGACCTCAATCGCTTTGGGAAAGTCGTAAAGCTTGAAGCTTTTAACCCTTTTGAGTCTGCCCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATGACTGAGGAGCTACAGAACTTCTTGGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745569" ref_strand="+" ref_description="SGN-E745569 [GI|47105885]">
      <seq>gacaaaagaaatggtgggcagagctatctgtttgaagcttctccgatcaacgacttatcgccgatgtttctcaacagaaacggcggcggtggagaccatatcaacgccggccatcagccaaagaaaacgaataagcgacggtcgccggaaattgtcggaccttatcaatagagcagactctgaatccaacattaaagatgctttaaacaaattggataacgaaggggaatccatacaaaagatagacattgttggctgtatcaacaatctccgtagaaccgataggtttgatcttgcccttcagctgtctgaatggatggaaagcagcaaaattatgatcagcaatggtgatcgggcaatacggatacaccttcttgccaacacaaagggaacagattcagccgaaatgtattttgacagcctgcaagaatctgaaaaaactagtaagacctatggagcacttctcagctcttattgcaggcagaaaatgtttgataaagtgtcaaagctttttgagaagatgaaggagcttaatttacatctactttaaattataacaatgtgatatctctttatttaagaagtggtcagcctgaaaaagtctctgcactggttcaagaaatggagcagagaaatattgccgttgatatatttacctataatcagttgatgaacagttatgctttagtgaaggatatagtatcagttgaggctgttcttgaaaagatggaaaagcatcaggtaaagtttgactggctcacatatggaaacctagctgggatatatatcaataacggctaccgtgataaggcgaatgatattctccaaaagatggagaaaatgaaagatatgcatgaccgtgaagctttccataccttaatcacattatatcagaaaacatctaatccatcaggagtcaatcgctcatgggaattattaaagtcagtttccccaactcccagcaagtttagctatctcatcgtgcttttggctctatccaaactgggggactcggaagcccttgagaaacgttttagagaattggagtcacattgtaaattctttgacatcagagtttcaaatgtgatgatggagtcctatcttgacagaaatatgatcgaagaagcaaatttgctttatgagaatgtgttgaagcaaggcgttgaacccaacttaaggacttacgatgcattcacaaatttctatataaaaaattcgcagatagactctgctctaaagtatttggagatgggtgccagcaaggcaaatcctaagaaaaaagtttggtttcctaaggatgaatccatcaagatgtttctagcttattttgaggacagtaatgatcctgttagagctgagaagttttgcgagattatgaagaagattaatcgcctcgattccagtgtttatgactctcttctaagcacaaactctgcagcctctgaagtggaactatgaacaccttcatgctcttgaggataacatgagtggctcattgctcaaagtttctcaaccctctccaagtggtatggaatctgtcgatttcgctctacatttgccatgttgctatttttttcatgctctttgtactttacattatttaagaaccttaccaagagagttatgtcagctcactagtatttctcgcccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="39731" stop="43239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40030" g_stop="40333" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40334" i_stop="41591" i_length="1258">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41592" g_stop="42938" g_length="1347"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="1650" r_length="1346" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1651" polyA_stop="1665"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E745569" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1651</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40030" e_stop="40333"/>
          <exon e_start="41592" e_stop="42938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAAGAAATGGTGGGCAGAGCTATCTGTTTGAAGCTTCTCCGATCAACGACTTATCGCCGATGTTTCTCAACAGAAACGGCGGCGGTGGAGACCATATCAACGCCGGCCATCAGCCAAAGAAAACGAATAAGCGACGGTCGCCGGAAATTGTCGGACCTTATCAATAGAGCAGACTCTGAATCCAACATTAAAGATGCTTTAAACAAATTGGATAACGAAGGGGAATCCATACAAAAGATAGACATTGTTGGCTGTATCAACAATCTCCGTAGAACCGATAGGTTTGATCTTGCCCTTCAGGTATCTATCTTTCATCTCCGAGCATGCTTTTTTCTCTCTCAAGTAACTCAATTAAGTATTTACCATTATAAAGTTTACATTTTCCATGGAGATGTTTTTCCTGCAATTTTTTTTTCGTTTCCACTGTTTGGTTGTTCAATGATAAATGTTTATTATGATTATTTAAGATTGATAGTAATGTCGAAGTGTCGATCGGATTGGTGAAGCATACGAAGAATACAAAGAAAAAAATGACTTCCACAAATCATTTAGTGTTTTCTAATTGAGTTTTCCTTGAAACATTTAGTGTTACGAATTTGTAATTTTTTTCTAGTTCTTCATTGCTTTTTTCTTTGTTTGCGATTCACAGTGATTTTGTCAAACATTCATTACACTAACAATAGTTGGAGTCTCAAATAAATATGCTTGTTGACTTACTGTCTCCAATAGAACATTTTTGCTTCAGATAGTAATTCCTTAACCTGCCACAAATCTCTCATTAGCAAGATATAAATCAAGTTAATTTCGCTCATAAACTACTGTGCCTAGTCAACTAGGAGTACAAACTTGTACTCCAACTAAAAGTGGAAACTGGGGAATATTCTATGACTTGCATAGTGTCAATGCATTTGTGAGAACTATTGTGGAATTGAACCTCTATTTGACCAGAATGGAAAACAGAAGTGATTGACAAAGAACAACTATACACTTGGTGTAATCCCACAAGTAGACTTTGAAGAGCTTGAGTGTTTCAATCCCAACTCACCTTAAAGAGAGTAGTCGTTCTCTTTGCCACATCAACAACTAGGGGTAAAGACTATCAAATAGCCAAGTTCAGGGGTAATTAAGAATACTGATAGATAGTTTAAGCTATATCCTTTATGTGTCATAATCTGAACTTGAGTTGACATACAAATTTGTTGCTCATATTATTGTGTTTTTTATTTAGTATCTTGGGCTTGACAAGTTAATAATGAATGAATATGCTATGATTGGGCAAAATTGTTGTTTCATAATCACAGCAGAAGACTTGTTTGTATTGGCTTTAGTTTAATTTTATAGACTGTCTGCTGTATTCAATGGCTCTAGCCAATTCAATTCAATGACCCTTGTTTGAATTGGCTATATTACGTGACTGCTGCCATTCAAACTATTCTTGTTTCATGAATCATATAATAGTCTTATCGAAGTTGATATCCTTTTCTTTTCCCCTTCGATTACATAAGCTGCTATTTTTGTCTTGGACATATTGTCTTAATCTTTGAACTTCCAAATGCAGCTGTCTGAATGGATGGAAAGCAGCAAAATTATGATCAGCAATGGTGATCGGGCAATACGGATACACCTTCTTGCCAACACAAAGGGAACAGATTCAGCCGAAATGTATTTTGACAGCCTGCAAGAATCTGAAAAAACTAGTAAGACCTATGGAGCACTTCTCAGCTCTTATTGCAGGCAGAAAATGTTTGATAAAGTGTCAAAGCTTTTTGAGAAGATGAAGGAGCTTAATTTTACATCTACTTTAAATTATAACAATGTGATATCTCTTTATTTAAGAAGTGGTCAGCCTGAAAAAGTCTCTGCACTGGTTCAAGAAATGGAGCAGAGAAATATTGCCGTTGATATATTTACCTATAATCAGTTGATGAACAGTTATGCTTTAGTGAAGGATATAGTATCAGTTGAGGCTGTTCTTGAAAAGATGGAAAAGCATCAGGTAAAGTTTGACTGGCTCACATATGGAAACCTAGCTGGGATATATATCAATAACGGCTACCGTGATAAGGCGAATGATATTCTCCAAAAGATGGAGAAAATGAAAGATATGCATGACCGTGAAGCTTTCCATACCTTAATCACATTATATCAGAAAACATCTAATCCATCAGGAGTCAATCGCTCATGGGAATTATTAAAGTCAGTTTTCCCAACTCCCAGCAAGTTTAGCTATCTCATCGTGCTTTTGGCTCTATCCAAACTGGGGGACTCGGAAGCCCTTGAGAAACGTTTTAGAGAATTGGAGTCACATTGTAAATTCTTTGACATCAGAGTTTCAAATGTGATGATGGAGTCCTATCTTGACAGAAATATGATCGAAGAAGCAAATTTGCTTTATGAGAATGTGTTGAAGCAAGGCGTTGAACCCAACTTAAGGACTTACGATGCATTCACAAATTTCTATATAAAAAATTCGCAGATAGACTCTGCTCTAAAGTATTTGGAGATGGGTGCCAGCAAGGCAAATCCTAAGAAAAAAGTTTGGTTTCCTAAGGATGAATCCATCAAGATGTTTCTAGCTTATTTTGAGGACAGTAATGATCCTGTTAGAGCTGAGAAGTTTTGCGAGATTATGAAGAAGATTAATCGCCTCGATTCCAGTGTTTATGACTCTCTTCTAAGCACAAACTCTGCAGCCTCTGAAGTGGAACTATGAACACCTTCATGCTCTTGAGGATAACATGAGTGGCTCATTGCTCAAAGTTTCTCAACCCTCTCCAAGTGGTATGGAATCTGTCGATTTCGCTCTACATTTGCCATGTTGCTATTTTTTTCATGCTCTTTGTACTTTACATTATTTAAGAACCTTACCAAGAGAGTTATGTCAGCTCACTAGTATTTCTCGCCC</genome_strand>
        <mrna_strand>GACAAAAGAAATGGTGGGCAGAGCTATCTGTTTGAAGCTTCTCCGATCAACGACTTATCGCCGATGTTTCTCAACAGAAACGGCGGCGGTGGAGACCATATCAACGCCGGCCATCAGCCAAAGAAAACGAATAAGCGACGGTCGCCGGAAATTGTCGGACCTTATCAATAGAGCAGACTCTGAATCCAACATTAAAGATGCTTTAAACAAATTGGATAACGAAGGGGAATCCATACAAAAGATAGACATTGTTGGCTGTATCAACAATCTCCGTAGAACCGATAGGTTTGATCTTGCCCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGAATGGATGGAAAGCAGCAAAATTATGATCAGCAATGGTGATCGGGCAATACGGATACACCTTCTTGCCAACACAAAGGGAACAGATTCAGCCGAAATGTATTTTGACAGCCTGCAAGAATCTGAAAAAACTAGTAAGACCTATGGAGCACTTCTCAGCTCTTATTGCAGGCAGAAAATGTTTGATAAAGTGTCAAAGCTTTTTGAGAAGATGAAGGAGCTTAA-TTTACATCTACTTTAAATTATAACAATGTGATATCTCTTTATTTAAGAAGTGGTCAGCCTGAAAAAGTCTCTGCACTGGTTCAAGAAATGGAGCAGAGAAATATTGCCGTTGATATATTTACCTATAATCAGTTGATGAACAGTTATGCTTTAGTGAAGGATATAGTATCAGTTGAGGCTGTTCTTGAAAAGATGGAAAAGCATCAGGTAAAGTTTGACTGGCTCACATATGGAAACCTAGCTGGGATATATATCAATAACGGCTACCGTGATAAGGCGAATGATATTCTCCAAAAGATGGAGAAAATGAAAGATATGCATGACCGTGAAGCTTTCCATACCTTAATCACATTATATCAGAAAACATCTAATCCATCAGGAGTCAATCGCTCATGGGAATTATTAAAGTCAGTTTCCCCAACTCCCAGCAAGTTTAGCTATCTCATCGTGCTTTTGGCTCTATCCAAACTGGGGGACTCGGAAGCCCTTGAGAAACGTTTTAGAGAATTGGAGTCACATTGTAAATTCTTTGACATCAGAGTTTCAAATGTGATGATGGAGTCCTATCTTGACAGAAATATGATCGAAGAAGCAAATTTGCTTTATGAGAATGTGTTGAAGCAAGGCGTTGAACCCAACTTAAGGACTTACGATGCATTCACAAATTTCTATATAAAAAATTCGCAGATAGACTCTGCTCTAAAGTATTTGGAGATGGGTGCCAGCAAGGCAAATCCTAAGAAAAAAGTTTGGTTTCCTAAGGATGAATCCATCAAGATGTTTCTAGCTTATTTTGAGGACAGTAATGATCCTGTTAGAGCTGAGAAGTTTTGCGAGATTATGAAGAAGATTAATCGCCTCGATTCCAGTGTTTATGACTCTCTTCTAAGCACAAACTCTGCAGCCTCTGAAGTGGAACTATGAACACCTTCATGCTCTTGAGGATAACATGAGTGGCTCATTGCTCAAAGTTTCTCAACCCTCTCCAAGTGGTATGGAATCTGTCGATTTCGCTCTACATTTGCCATGTTGCTATTTTTTTCATGCTCTTTGTACTTTACATTATTTAAGAACCTTACCAAGAGAGTTATGTCAGCTCACTAGTATTTCTCGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447795" ref_strand="+" ref_description="SGN-E447795 [cSTS-2-M9]">
      <seq>atttcttcttagttataaaccctagttaaaccctttcttcttcatccatcttacttcaccacaaaagaaatggtgagcaaagctatctgtttgaagcttctccgatcaacaacttatcgccgatgtttctcaacagaaacggcggcggcggagaccgtatcaacgccgtccatcagccaaagaaaacgaataagcgacggtcgccggaaattgtcggaccttatcaatagagcagactctgaatctaacttcaaagatgctttaaacaaattggataacgaaggggaatccatacaaaagctagacattattggctgtatcaacaatctccgtagaaccgataggtttgatcttgcccttcagctgtctgaatggatggaaagcagcaaaattatgatcagcaatnggtgatcgggcaatacggatacaccttcttgccaacacaaagggaacagattcagccgaaatgtattttgacagcctgcaagaatctgaaaaaactagtaagacctatggagcacttctcagctcttattgcaggcagaaaatgtttgataaagtgtcaaagctttttgagaagatgaaggagcttaattttacatctactttaaatataacaatgtgatatctcttcatttaagaaatggccagcctgaaaaagtctctgcactggttcaagaaagggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="39692" stop="42216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40038" g_stop="40333" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="363" r_length="296" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40334" i_stop="41591" i_length="1258">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41592" g_stop="41916" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="688" r_length="325" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E447795" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40038" e_stop="40333"/>
          <exon e_start="41592" e_stop="41916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTGGGCAGAGCTATCTGTTTGAAGCTTCTCCGATCAACGACTTATCGCCGATGTTTCTCAACAGAAACGGCGGCGGTGGAGACCATATCAACGCCGGCCATCAGCCAAAGAAAACGAATAAGCGACGGTCGCCGGAAATTGTCGGACCTTATCAATAGAGCAGACTCTGAATCCAACATTAAAGATGCTTTAAACAAATTGGATAACGAAGGGGAATCCATACAAAAGATAGACATTGTTGGCTGTATCAACAATCTCCGTAGAACCGATAGGTTTGATCTTGCCCTTCAGGTATCTATCTTTCATCTCCGAGCATGCTTTTTTCTCTCTCAAGTAACTCAATTAAGTATTTACCATTATAAAGTTTACATTTTCCATGGAGATGTTTTTCCTGCAATTTTTTTTTCGTTTCCACTGTTTGGTTGTTCAATGATAAATGTTTATTATGATTATTTAAGATTGATAGTAATGTCGAAGTGTCGATCGGATTGGTGAAGCATACGAAGAATACAAAGAAAAAAATGACTTCCACAAATCATTTAGTGTTTTCTAATTGAGTTTTCCTTGAAACATTTAGTGTTACGAATTTGTAATTTTTTTCTAGTTCTTCATTGCTTTTTTCTTTGTTTGCGATTCACAGTGATTTTGTCAAACATTCATTACACTAACAATAGTTGGAGTCTCAAATAAATATGCTTGTTGACTTACTGTCTCCAATAGAACATTTTTGCTTCAGATAGTAATTCCTTAACCTGCCACAAATCTCTCATTAGCAAGATATAAATCAAGTTAATTTCGCTCATAAACTACTGTGCCTAGTCAACTAGGAGTACAAACTTGTACTCCAACTAAAAGTGGAAACTGGGGAATATTCTATGACTTGCATAGTGTCAATGCATTTGTGAGAACTATTGTGGAATTGAACCTCTATTTGACCAGAATGGAAAACAGAAGTGATTGACAAAGAACAACTATACACTTGGTGTAATCCCACAAGTAGACTTTGAAGAGCTTGAGTGTTTCAATCCCAACTCACCTTAAAGAGAGTAGTCGTTCTCTTTGCCACATCAACAACTAGGGGTAAAGACTATCAAATAGCCAAGTTCAGGGGTAATTAAGAATACTGATAGATAGTTTAAGCTATATCCTTTATGTGTCATAATCTGAACTTGAGTTGACATACAAATTTGTTGCTCATATTATTGTGTTTTTTATTTAGTATCTTGGGCTTGACAAGTTAATAATGAATGAATATGCTATGATTGGGCAAAATTGTTGTTTCATAATCACAGCAGAAGACTTGTTTGTATTGGCTTTAGTTTAATTTTATAGACTGTCTGCTGTATTCAATGGCTCTAGCCAATTCAATTCAATGACCCTTGTTTGAATTGGCTATATTACGTGACTGCTGCCATTCAAACTATTCTTGTTTCATGAATCATATAATAGTCTTATCGAAGTTGATATCCTTTTCTTTTCCCCTTCGATTACATAAGCTGCTATTTTTGTCTTGGACATATTGTCTTAATCTTTGAACTTCCAAATGCAGCTGTCTGAATGGATGGAAAGCAGCAAAATTATGATCAGCAAT-GGTGATCGGGCAATACGGATACACCTTCTTGCCAACACAAAGGGAACAGATTCAGCCGAAATGTATTTTGACAGCCTGCAAGAATCTGAAAAAACTAGTAAGACCTATGGAGCACTTCTCAGCTCTTATTGCAGGCAGAAAATGTTTGATAAAGTGTCAAAGCTTTTTGAGAAGATGAAGGAGCTTAATTTTACATCTACTTTAAATTATAACAATGTGATATCTCTTTATTTAAGAAGTGGTCAGCCTGAAAAAGTCTCTGCACTGGTTCAAGAAATGGAGC</genome_strand>
        <mrna_strand>AAATGGTGAGCAAAGCTATCTGTTTGAAGCTTCTCCGATCAACAACTTATCGCCGATGTTTCTCAACAGAAACGGCGGCGGCGGAGACCGTATCAACGCCGTCCATCAGCCAAAGAAAACGAATAAGCGACGGTCGCCGGAAATTGTCGGACCTTATCAATAGAGCAGACTCTGAATCTAACTTCAAAGATGCTTTAAACAAATTGGATAACGAAGGGGAATCCATACAAAAGCTAGACATTATTGGCTGTATCAACAATCTCCGTAGAACCGATAGGTTTGATCTTGCCCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGAATGGATGGAAAGCAGCAAAATTATGATCAGCAATNGGTGATCGGGCAATACGGATACACCTTCTTGCCAACACAAAGGGAACAGATTCAGCCGAAATGTATTTTGACAGCCTGCAAGAATCTGAAAAAACTAGTAAGACCTATGGAGCACTTCTCAGCTCTTATTGCAGGCAGAAAATGTTTGATAAAGTGTCAAAGCTTTTTGAGAAGATGAAGGAGCTTAATTTTACATCTACTTTAAA-TATAACAATGTGATATCTCTTCATTTAAGAAATGGCCAGCCTGAAAAAGTCTCTGCACTGGTTCAAGAAAGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275352" ref_strand="+" ref_description="SGN-E275352 [cLEN-10-K7]">
      <seq>gggcagagctatctgtttgaagcttctccgatcaacgacttatcgccgatgtttctcaacagaaacggcggcggtggagaccatatcaacgccggccatcagccaaagaaaacgaataagcgacggtcgccggaaattgtcggaccttatcaatagagcagactctgaatccaacattaaagatgctttaaacaaattggataacgaaggggaatccatacaaaagatagacattgttggctgtatcaacaatctccgtagaaccgataggtttgatcttgcccttcagctgtctgaatggatggaaagcagcaaaattatgatcagcaatggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="39745" stop="41938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40045" g_stop="40333" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40334" i_stop="41591" i_length="1258">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41592" g_stop="41638" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="336" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E275352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40045" e_stop="40333"/>
          <exon e_start="41592" e_stop="41638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAGAGCTATCTGTTTGAAGCTTCTCCGATCAACGACTTATCGCCGATGTTTCTCAACAGAAACGGCGGCGGTGGAGACCATATCAACGCCGGCCATCAGCCAAAGAAAACGAATAAGCGACGGTCGCCGGAAATTGTCGGACCTTATCAATAGAGCAGACTCTGAATCCAACATTAAAGATGCTTTAAACAAATTGGATAACGAAGGGGAATCCATACAAAAGATAGACATTGTTGGCTGTATCAACAATCTCCGTAGAACCGATAGGTTTGATCTTGCCCTTCAGGTATCTATCTTTCATCTCCGAGCATGCTTTTTTCTCTCTCAAGTAACTCAATTAAGTATTTACCATTATAAAGTTTACATTTTCCATGGAGATGTTTTTCCTGCAATTTTTTTTTCGTTTCCACTGTTTGGTTGTTCAATGATAAATGTTTATTATGATTATTTAAGATTGATAGTAATGTCGAAGTGTCGATCGGATTGGTGAAGCATACGAAGAATACAAAGAAAAAAATGACTTCCACAAATCATTTAGTGTTTTCTAATTGAGTTTTCCTTGAAACATTTAGTGTTACGAATTTGTAATTTTTTTCTAGTTCTTCATTGCTTTTTTCTTTGTTTGCGATTCACAGTGATTTTGTCAAACATTCATTACACTAACAATAGTTGGAGTCTCAAATAAATATGCTTGTTGACTTACTGTCTCCAATAGAACATTTTTGCTTCAGATAGTAATTCCTTAACCTGCCACAAATCTCTCATTAGCAAGATATAAATCAAGTTAATTTCGCTCATAAACTACTGTGCCTAGTCAACTAGGAGTACAAACTTGTACTCCAACTAAAAGTGGAAACTGGGGAATATTCTATGACTTGCATAGTGTCAATGCATTTGTGAGAACTATTGTGGAATTGAACCTCTATTTGACCAGAATGGAAAACAGAAGTGATTGACAAAGAACAACTATACACTTGGTGTAATCCCACAAGTAGACTTTGAAGAGCTTGAGTGTTTCAATCCCAACTCACCTTAAAGAGAGTAGTCGTTCTCTTTGCCACATCAACAACTAGGGGTAAAGACTATCAAATAGCCAAGTTCAGGGGTAATTAAGAATACTGATAGATAGTTTAAGCTATATCCTTTATGTGTCATAATCTGAACTTGAGTTGACATACAAATTTGTTGCTCATATTATTGTGTTTTTTATTTAGTATCTTGGGCTTGACAAGTTAATAATGAATGAATATGCTATGATTGGGCAAAATTGTTGTTTCATAATCACAGCAGAAGACTTGTTTGTATTGGCTTTAGTTTAATTTTATAGACTGTCTGCTGTATTCAATGGCTCTAGCCAATTCAATTCAATGACCCTTGTTTGAATTGGCTATATTACGTGACTGCTGCCATTCAAACTATTCTTGTTTCATGAATCATATAATAGTCTTATCGAAGTTGATATCCTTTTCTTTTCCCCTTCGATTACATAAGCTGCTATTTTTGTCTTGGACATATTGTCTTAATCTTTGAACTTCCAAATGCAGCTGTCTGAATGGATGGAAAGCAGCAAAATTATGATCAGCAATGGTGA</genome_strand>
        <mrna_strand>GGGCAGAGCTATCTGTTTGAAGCTTCTCCGATCAACGACTTATCGCCGATGTTTCTCAACAGAAACGGCGGCGGTGGAGACCATATCAACGCCGGCCATCAGCCAAAGAAAACGAATAAGCGACGGTCGCCGGAAATTGTCGGACCTTATCAATAGAGCAGACTCTGAATCCAACATTAAAGATGCTTTAAACAAATTGGATAACGAAGGGGAATCCATACAAAAGATAGACATTGTTGGCTGTATCAACAATCTCCGTAGAACCGATAGGTTTGATCTTGCCCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGAATGGATGGAAAGCAGCAAAATTATGATCAGCAATGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314444" ref_strand="+" ref_description="SGN-E314444 [cTOB-1-A13]">
      <seq>gcagagctatctgtttgaagcttctccgatcaacgacttatcgccgatgtttctcaacagaaacggcggcggtggagaccatatcaacgccggccatcagccaaagaaaacgaataagcgacggtcgccggaaattgtcggaccttatcaatagagcagactctgaatccaacattaaagatgctttaaacaaattggataacgaaggggaatccatacaaaagatagacattgttggctgtatcaacaatctccgtagaaccgataggtttgatcttgcccttcagctgtctgaatggatggaaagcagcaaaattatgatcagcaatggtgatcgggcaatacggatacaccttcttgccaacacaaagggaacagattcagccgaaatgtattttgacagcctgcaagaatctgaaaaaactagtaagacctatggagcacttctcagctcttattgcaggcagaaaatgtttgataaagtgtcaaagctttttgagaagatgaaggagcttaattttacatctactttaaattataacaatgtgatatctctttatttaagaagtggtcagcctgaaaaagtctctgcactggttcaagaaatggagcagagaaatattgccgttgatatatttacctataatcagttgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="39747" stop="42262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40047" g_stop="40333" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40334" i_stop="41591" i_length="1258">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41592" g_stop="41962" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="658" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E314444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40047" e_stop="40333"/>
          <exon e_start="41592" e_stop="41962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGCTATCTGTTTGAAGCTTCTCCGATCAACGACTTATCGCCGATGTTTCTCAACAGAAACGGCGGCGGTGGAGACCATATCAACGCCGGCCATCAGCCAAAGAAAACGAATAAGCGACGGTCGCCGGAAATTGTCGGACCTTATCAATAGAGCAGACTCTGAATCCAACATTAAAGATGCTTTAAACAAATTGGATAACGAAGGGGAATCCATACAAAAGATAGACATTGTTGGCTGTATCAACAATCTCCGTAGAACCGATAGGTTTGATCTTGCCCTTCAGGTATCTATCTTTCATCTCCGAGCATGCTTTTTTCTCTCTCAAGTAACTCAATTAAGTATTTACCATTATAAAGTTTACATTTTCCATGGAGATGTTTTTCCTGCAATTTTTTTTTCGTTTCCACTGTTTGGTTGTTCAATGATAAATGTTTATTATGATTATTTAAGATTGATAGTAATGTCGAAGTGTCGATCGGATTGGTGAAGCATACGAAGAATACAAAGAAAAAAATGACTTCCACAAATCATTTAGTGTTTTCTAATTGAGTTTTCCTTGAAACATTTAGTGTTACGAATTTGTAATTTTTTTCTAGTTCTTCATTGCTTTTTTCTTTGTTTGCGATTCACAGTGATTTTGTCAAACATTCATTACACTAACAATAGTTGGAGTCTCAAATAAATATGCTTGTTGACTTACTGTCTCCAATAGAACATTTTTGCTTCAGATAGTAATTCCTTAACCTGCCACAAATCTCTCATTAGCAAGATATAAATCAAGTTAATTTCGCTCATAAACTACTGTGCCTAGTCAACTAGGAGTACAAACTTGTACTCCAACTAAAAGTGGAAACTGGGGAATATTCTATGACTTGCATAGTGTCAATGCATTTGTGAGAACTATTGTGGAATTGAACCTCTATTTGACCAGAATGGAAAACAGAAGTGATTGACAAAGAACAACTATACACTTGGTGTAATCCCACAAGTAGACTTTGAAGAGCTTGAGTGTTTCAATCCCAACTCACCTTAAAGAGAGTAGTCGTTCTCTTTGCCACATCAACAACTAGGGGTAAAGACTATCAAATAGCCAAGTTCAGGGGTAATTAAGAATACTGATAGATAGTTTAAGCTATATCCTTTATGTGTCATAATCTGAACTTGAGTTGACATACAAATTTGTTGCTCATATTATTGTGTTTTTTATTTAGTATCTTGGGCTTGACAAGTTAATAATGAATGAATATGCTATGATTGGGCAAAATTGTTGTTTCATAATCACAGCAGAAGACTTGTTTGTATTGGCTTTAGTTTAATTTTATAGACTGTCTGCTGTATTCAATGGCTCTAGCCAATTCAATTCAATGACCCTTGTTTGAATTGGCTATATTACGTGACTGCTGCCATTCAAACTATTCTTGTTTCATGAATCATATAATAGTCTTATCGAAGTTGATATCCTTTTCTTTTCCCCTTCGATTACATAAGCTGCTATTTTTGTCTTGGACATATTGTCTTAATCTTTGAACTTCCAAATGCAGCTGTCTGAATGGATGGAAAGCAGCAAAATTATGATCAGCAATGGTGATCGGGCAATACGGATACACCTTCTTGCCAACACAAAGGGAACAGATTCAGCCGAAATGTATTTTGACAGCCTGCAAGAATCTGAAAAAACTAGTAAGACCTATGGAGCACTTCTCAGCTCTTATTGCAGGCAGAAAATGTTTGATAAAGTGTCAAAGCTTTTTGAGAAGATGAAGGAGCTTAATTTTACATCTACTTTAAATTATAACAATGTGATATCTCTTTATTTAAGAAGTGGTCAGCCTGAAAAAGTCTCTGCACTGGTTCAAGAAATGGAGCAGAGAAATATTGCCGTTGATATATTTACCTATAATCAGTTGATGAA</genome_strand>
        <mrna_strand>GCAGAGCTATCTGTTTGAAGCTTCTCCGATCAACGACTTATCGCCGATGTTTCTCAACAGAAACGGCGGCGGTGGAGACCATATCAACGCCGGCCATCAGCCAAAGAAAACGAATAAGCGACGGTCGCCGGAAATTGTCGGACCTTATCAATAGAGCAGACTCTGAATCCAACATTAAAGATGCTTTAAACAAATTGGATAACGAAGGGGAATCCATACAAAAGATAGACATTGTTGGCTGTATCAACAATCTCCGTAGAACCGATAGGTTTGATCTTGCCCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGAATGGATGGAAAGCAGCAAAATTATGATCAGCAATGGTGATCGGGCAATACGGATACACCTTCTTGCCAACACAAAGGGAACAGATTCAGCCGAAATGTATTTTGACAGCCTGCAAGAATCTGAAAAAACTAGTAAGACCTATGGAGCACTTCTCAGCTCTTATTGCAGGCAGAAAATGTTTGATAAAGTGTCAAAGCTTTTTGAGAAGATGAAGGAGCTTAATTTTACATCTACTTTAAATTATAACAATGTGATATCTCTTTATTTAAGAAGTGGTCAGCCTGAAAAAGTCTCTGCACTGGTTCAAGAAATGGAGCAGAGAAATATTGCCGTTGATATATTTACCTATAATCAGTTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417522" ref_strand="+" ref_description="SGN-E417522 [STM-25-H17]">
      <seq>ctgtttgaagcttctccgatcaacaacttatcgccgatgtttctcaacagaaacggcggtggcggagaccgtatcaacgccgtccatcagccaaagaaaacgaataagcgacggtcgccggaaattgtcggaccttatcaatagagcagactctgaatctaacttcaaagatgctttaaacaaattggataacgaaggggaatccatacaaaagctagacattattggctgtatcaacaatctccgtagaaccgataggtttgatcttgcccttcagctgtctgaatggatggaaagcagcaaaattatgatcagcaatggtgatcgggcaatacggatacaccttcttgccaacacaaagggaacagattcagccgaaatgtattttgacagcctgcaagaatctgaaaaaactagtaagacctatggagcacttctcagctcttattgcaggcagaaaatgtttgataaagtgtcaaagctttttgagaagatgaaggagcttaattttacatctactttaaattataacaatgtgatatctcttcatttaagaaatggccagcctgaaaaagtctctgcactggttcaagaaatggagcagagaaatattgcagttgatatgttcacctataatcagttgatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="39757" stop="42263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40057" g_stop="40333" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40334" i_stop="41591" i_length="1258">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41592" g_stop="41963" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="649" r_length="372" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E417522" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40057" e_stop="40333"/>
          <exon e_start="41592" e_stop="41963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTGAAGCTTCTCCGATCAACGACTTATCGCCGATGTTTCTCAACAGAAACGGCGGCGGTGGAGACCATATCAACGCCGGCCATCAGCCAAAGAAAACGAATAAGCGACGGTCGCCGGAAATTGTCGGACCTTATCAATAGAGCAGACTCTGAATCCAACATTAAAGATGCTTTAAACAAATTGGATAACGAAGGGGAATCCATACAAAAGATAGACATTGTTGGCTGTATCAACAATCTCCGTAGAACCGATAGGTTTGATCTTGCCCTTCAGGTATCTATCTTTCATCTCCGAGCATGCTTTTTTCTCTCTCAAGTAACTCAATTAAGTATTTACCATTATAAAGTTTACATTTTCCATGGAGATGTTTTTCCTGCAATTTTTTTTTCGTTTCCACTGTTTGGTTGTTCAATGATAAATGTTTATTATGATTATTTAAGATTGATAGTAATGTCGAAGTGTCGATCGGATTGGTGAAGCATACGAAGAATACAAAGAAAAAAATGACTTCCACAAATCATTTAGTGTTTTCTAATTGAGTTTTCCTTGAAACATTTAGTGTTACGAATTTGTAATTTTTTTCTAGTTCTTCATTGCTTTTTTCTTTGTTTGCGATTCACAGTGATTTTGTCAAACATTCATTACACTAACAATAGTTGGAGTCTCAAATAAATATGCTTGTTGACTTACTGTCTCCAATAGAACATTTTTGCTTCAGATAGTAATTCCTTAACCTGCCACAAATCTCTCATTAGCAAGATATAAATCAAGTTAATTTCGCTCATAAACTACTGTGCCTAGTCAACTAGGAGTACAAACTTGTACTCCAACTAAAAGTGGAAACTGGGGAATATTCTATGACTTGCATAGTGTCAATGCATTTGTGAGAACTATTGTGGAATTGAACCTCTATTTGACCAGAATGGAAAACAGAAGTGATTGACAAAGAACAACTATACACTTGGTGTAATCCCACAAGTAGACTTTGAAGAGCTTGAGTGTTTCAATCCCAACTCACCTTAAAGAGAGTAGTCGTTCTCTTTGCCACATCAACAACTAGGGGTAAAGACTATCAAATAGCCAAGTTCAGGGGTAATTAAGAATACTGATAGATAGTTTAAGCTATATCCTTTATGTGTCATAATCTGAACTTGAGTTGACATACAAATTTGTTGCTCATATTATTGTGTTTTTTATTTAGTATCTTGGGCTTGACAAGTTAATAATGAATGAATATGCTATGATTGGGCAAAATTGTTGTTTCATAATCACAGCAGAAGACTTGTTTGTATTGGCTTTAGTTTAATTTTATAGACTGTCTGCTGTATTCAATGGCTCTAGCCAATTCAATTCAATGACCCTTGTTTGAATTGGCTATATTACGTGACTGCTGCCATTCAAACTATTCTTGTTTCATGAATCATATAATAGTCTTATCGAAGTTGATATCCTTTTCTTTTCCCCTTCGATTACATAAGCTGCTATTTTTGTCTTGGACATATTGTCTTAATCTTTGAACTTCCAAATGCAGCTGTCTGAATGGATGGAAAGCAGCAAAATTATGATCAGCAATGGTGATCGGGCAATACGGATACACCTTCTTGCCAACACAAAGGGAACAGATTCAGCCGAAATGTATTTTGACAGCCTGCAAGAATCTGAAAAAACTAGTAAGACCTATGGAGCACTTCTCAGCTCTTATTGCAGGCAGAAAATGTTTGATAAAGTGTCAAAGCTTTTTGAGAAGATGAAGGAGCTTAATTTTACATCTACTTTAAATTATAACAATGTGATATCTCTTTATTTAAGAAGTGGTCAGCCTGAAAAAGTCTCTGCACTGGTTCAAGAAATGGAGCAGAGAAATATTGCCGTTGATATATTTACCTATAATCAGTTGATGAAC</genome_strand>
        <mrna_strand>CTGTTTGAAGCTTCTCCGATCAACAACTTATCGCCGATGTTTCTCAACAGAAACGGCGGTGGCGGAGACCGTATCAACGCCGTCCATCAGCCAAAGAAAACGAATAAGCGACGGTCGCCGGAAATTGTCGGACCTTATCAATAGAGCAGACTCTGAATCTAACTTCAAAGATGCTTTAAACAAATTGGATAACGAAGGGGAATCCATACAAAAGCTAGACATTATTGGCTGTATCAACAATCTCCGTAGAACCGATAGGTTTGATCTTGCCCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGAATGGATGGAAAGCAGCAAAATTATGATCAGCAATGGTGATCGGGCAATACGGATACACCTTCTTGCCAACACAAAGGGAACAGATTCAGCCGAAATGTATTTTGACAGCCTGCAAGAATCTGAAAAAACTAGTAAGACCTATGGAGCACTTCTCAGCTCTTATTGCAGGCAGAAAATGTTTGATAAAGTGTCAAAGCTTTTTGAGAAGATGAAGGAGCTTAATTTTACATCTACTTTAAATTATAACAATGTGATATCTCTTCATTTAAGAAATGGCCAGCCTGAAAAAGTCTCTGCACTGGTTCAAGAAATGGAGCAGAGAAATATTGCAGTTGATATGTTCACCTATAATCAGTTGATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446287" ref_strand="+" ref_description="SGN-E446287 [cSTA-20-J7]">
      <seq>ctgtttgaagcttctccgatcaacaacttatcgccgatgtttctcaacagaaacggcggtggcggagaccgtatcaacgccgtccatcagccaaagaaaacgaataagcgacggtcgccggaaattgtcggaccttatcaatagagcagactctgaatctaacttcaaagatgctttaaacaaattggataacgaaggggaatccatacaaaagctagacattattggctgtatcaacaatctccgtagaaccgataggtttgatcttgcccttcagctgtctgaatggatggaaagcagcaaaattatgatcagcaatggtgatcgggcaatacggatacaccttcttgccaacacaaagggaacagattcagccgaaatgtattttgacagcctgcaagaatctgaaaaaactagtaagacctatggagcacttctcagctcttattgcaggcagaaaatgtttgataaagtgtcaaagctttttgagaagatgaaggagcttaattttacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="39757" stop="42132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40057" g_stop="40333" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40334" i_stop="41591" i_length="1258">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41592" g_stop="41832" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="518" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E446287" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40057" e_stop="40333"/>
          <exon e_start="41592" e_stop="41832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTGAAGCTTCTCCGATCAACGACTTATCGCCGATGTTTCTCAACAGAAACGGCGGCGGTGGAGACCATATCAACGCCGGCCATCAGCCAAAGAAAACGAATAAGCGACGGTCGCCGGAAATTGTCGGACCTTATCAATAGAGCAGACTCTGAATCCAACATTAAAGATGCTTTAAACAAATTGGATAACGAAGGGGAATCCATACAAAAGATAGACATTGTTGGCTGTATCAACAATCTCCGTAGAACCGATAGGTTTGATCTTGCCCTTCAGGTATCTATCTTTCATCTCCGAGCATGCTTTTTTCTCTCTCAAGTAACTCAATTAAGTATTTACCATTATAAAGTTTACATTTTCCATGGAGATGTTTTTCCTGCAATTTTTTTTTCGTTTCCACTGTTTGGTTGTTCAATGATAAATGTTTATTATGATTATTTAAGATTGATAGTAATGTCGAAGTGTCGATCGGATTGGTGAAGCATACGAAGAATACAAAGAAAAAAATGACTTCCACAAATCATTTAGTGTTTTCTAATTGAGTTTTCCTTGAAACATTTAGTGTTACGAATTTGTAATTTTTTTCTAGTTCTTCATTGCTTTTTTCTTTGTTTGCGATTCACAGTGATTTTGTCAAACATTCATTACACTAACAATAGTTGGAGTCTCAAATAAATATGCTTGTTGACTTACTGTCTCCAATAGAACATTTTTGCTTCAGATAGTAATTCCTTAACCTGCCACAAATCTCTCATTAGCAAGATATAAATCAAGTTAATTTCGCTCATAAACTACTGTGCCTAGTCAACTAGGAGTACAAACTTGTACTCCAACTAAAAGTGGAAACTGGGGAATATTCTATGACTTGCATAGTGTCAATGCATTTGTGAGAACTATTGTGGAATTGAACCTCTATTTGACCAGAATGGAAAACAGAAGTGATTGACAAAGAACAACTATACACTTGGTGTAATCCCACAAGTAGACTTTGAAGAGCTTGAGTGTTTCAATCCCAACTCACCTTAAAGAGAGTAGTCGTTCTCTTTGCCACATCAACAACTAGGGGTAAAGACTATCAAATAGCCAAGTTCAGGGGTAATTAAGAATACTGATAGATAGTTTAAGCTATATCCTTTATGTGTCATAATCTGAACTTGAGTTGACATACAAATTTGTTGCTCATATTATTGTGTTTTTTATTTAGTATCTTGGGCTTGACAAGTTAATAATGAATGAATATGCTATGATTGGGCAAAATTGTTGTTTCATAATCACAGCAGAAGACTTGTTTGTATTGGCTTTAGTTTAATTTTATAGACTGTCTGCTGTATTCAATGGCTCTAGCCAATTCAATTCAATGACCCTTGTTTGAATTGGCTATATTACGTGACTGCTGCCATTCAAACTATTCTTGTTTCATGAATCATATAATAGTCTTATCGAAGTTGATATCCTTTTCTTTTCCCCTTCGATTACATAAGCTGCTATTTTTGTCTTGGACATATTGTCTTAATCTTTGAACTTCCAAATGCAGCTGTCTGAATGGATGGAAAGCAGCAAAATTATGATCAGCAATGGTGATCGGGCAATACGGATACACCTTCTTGCCAACACAAAGGGAACAGATTCAGCCGAAATGTATTTTGACAGCCTGCAAGAATCTGAAAAAACTAGTAAGACCTATGGAGCACTTCTCAGCTCTTATTGCAGGCAGAAAATGTTTGATAAAGTGTCAAAGCTTTTTGAGAAGATGAAGGAGCTTAATTTTACATCTA</genome_strand>
        <mrna_strand>CTGTTTGAAGCTTCTCCGATCAACAACTTATCGCCGATGTTTCTCAACAGAAACGGCGGTGGCGGAGACCGTATCAACGCCGTCCATCAGCCAAAGAAAACGAATAAGCGACGGTCGCCGGAAATTGTCGGACCTTATCAATAGAGCAGACTCTGAATCTAACTTCAAAGATGCTTTAAACAAATTGGATAACGAAGGGGAATCCATACAAAAGCTAGACATTATTGGCTGTATCAACAATCTCCGTAGAACCGATAGGTTTGATCTTGCCCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGAATGGATGGAAAGCAGCAAAATTATGATCAGCAATGGTGATCGGGCAATACGGATACACCTTCTTGCCAACACAAAGGGAACAGATTCAGCCGAAATGTATTTTGACAGCCTGCAAGAATCTGAAAAAACTAGTAAGACCTATGGAGCACTTCTCAGCTCTTATTGCAGGCAGAAAATGTTTGATAAAGTGTCAAAGCTTTTTGAGAAGATGAAGGAGCTTAATTTTACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687753" ref_strand="+" ref_description="SGN-E687753 [T3_tus_79_N08]">
      <seq>gttcttgaaaagatggaaaagcatcaggtaaagtttgactggctcacatatggaaacctagctgggatatatatcaataacggctaccgtgataaggcgaatgatattctccaaaagatggagaaaatgaaagatatgcatgaccgtgaagctttccataccttaatcacattatatcagaaaacatctaatccatcaggagtcaatcgctcatgggaattattaaagtcagttttcccaactcccagcaagtttagctatctcatcgtgcttttggctctatccaaactgggggactcggaagcccttgagaaacgttttagagaattggagtcacattgtaaattctttgacatcagagtttcaaatgtgatgatggagtcctatcttgacagaaatatgatcgaagaagcaaatttgctttatgagaatgtgttgaagcaaggcgttgaacccaacttaaggacttacgatgcattcacaaatttctatataaaaaattcgcagatagactctgctctaaagtatttggagatgggtgccagcaaggcaaatcctaagaaaaaagtttggtttcctaaggatgaatccatcaagatgtttctagcttattttgaggacagtaatgatcctgttagagctgagaagttttgcgagattatgaagaagattaatcgcctcgattccagtgtttatgactctcttctaagcacaaactctgcaccctctgaagtggaactatgaacaccttcatgctcttgaggataacatgagtggctcattgctcaaagtttctcaaccctctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="41703" stop="43110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42003" g_stop="42810" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E687753" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42003" e_stop="42810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGAAAAGATGGAAAAGCATCAGGTAAAGTTTGACTGGCTCACATATGGAAACCTAGCTGGGATATATATCAATAACGGCTACCGTGATAAGGCGAATGATATTCTCCAAAAGATGGAGAAAATGAAAGATATGCATGACCGTGAAGCTTTCCATACCTTAATCACATTATATCAGAAAACATCTAATCCATCAGGAGTCAATCGCTCATGGGAATTATTAAAGTCAGTTTTCCCAACTCCCAGCAAGTTTAGCTATCTCATCGTGCTTTTGGCTCTATCCAAACTGGGGGACTCGGAAGCCCTTGAGAAACGTTTTAGAGAATTGGAGTCACATTGTAAATTCTTTGACATCAGAGTTTCAAATGTGATGATGGAGTCCTATCTTGACAGAAATATGATCGAAGAAGCAAATTTGCTTTATGAGAATGTGTTGAAGCAAGGCGTTGAACCCAACTTAAGGACTTACGATGCATTCACAAATTTCTATATAAAAAATTCGCAGATAGACTCTGCTCTAAAGTATTTGGAGATGGGTGCCAGCAAGGCAAATCCTAAGAAAAAAGTTTGGTTTCCTAAGGATGAATCCATCAAGATGTTTCTAGCTTATTTTGAGGACAGTAATGATCCTGTTAGAGCTGAGAAGTTTTGCGAGATTATGAAGAAGATTAATCGCCTCGATTCCAGTGTTTATGACTCTCTTCTAAGCACAAACTCTGCAGCCTCTGAAGTGGAACTATGAACACCTTCATGCTCTTGAGGATAACATGAGTGGCTCATTGCTCAAAGTTTCTCAACCCTCTCCA</genome_strand>
        <mrna_strand>GTTCTTGAAAAGATGGAAAAGCATCAGGTAAAGTTTGACTGGCTCACATATGGAAACCTAGCTGGGATATATATCAATAACGGCTACCGTGATAAGGCGAATGATATTCTCCAAAAGATGGAGAAAATGAAAGATATGCATGACCGTGAAGCTTTCCATACCTTAATCACATTATATCAGAAAACATCTAATCCATCAGGAGTCAATCGCTCATGGGAATTATTAAAGTCAGTTTTCCCAACTCCCAGCAAGTTTAGCTATCTCATCGTGCTTTTGGCTCTATCCAAACTGGGGGACTCGGAAGCCCTTGAGAAACGTTTTAGAGAATTGGAGTCACATTGTAAATTCTTTGACATCAGAGTTTCAAATGTGATGATGGAGTCCTATCTTGACAGAAATATGATCGAAGAAGCAAATTTGCTTTATGAGAATGTGTTGAAGCAAGGCGTTGAACCCAACTTAAGGACTTACGATGCATTCACAAATTTCTATATAAAAAATTCGCAGATAGACTCTGCTCTAAAGTATTTGGAGATGGGTGCCAGCAAGGCAAATCCTAAGAAAAAAGTTTGGTTTCCTAAGGATGAATCCATCAAGATGTTTCTAGCTTATTTTGAGGACAGTAATGATCCTGTTAGAGCTGAGAAGTTTTGCGAGATTATGAAGAAGATTAATCGCCTCGATTCCAGTGTTTATGACTCTCTTCTAAGCACAAACTCTGCACCCTCTGAAGTGGAACTATGAACACCTTCATGCTCTTGAGGATAACATGAGTGGCTCATTGCTCAAAGTTTCTCAACCCTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323735" ref_strand="+" ref_description="SGN-E323735 [cTOC-2-N10]">
      <seq>ttcttgaaaagatggaaaagcatcaggtaaagtttgactggctcacatatggaaacctagctgggatatatatcaataacggctaccgtgataaggcgaatgatattctccaaaagatggagaaaatgaaagatatgcatgaccgtgaagctttccataccttaatcacattatatcagaaaacatctaatccatcaggagtcaatcgctcatgggaattattaaagtcagttttcccaactcccagcaagtttagctatctcatcgtgcttttggctctatccaaactgggggactcggaagcccttgagaaacgttttagagaattggagtcacattgtaaattctttgacatcagagtttcaaatgtgatgatggagtcctatcttgacagaaatatgatcgaagaagcaaatttgctttatgagaatgtgttgaagcaaggcgttgaacccaacttaaggacttacgatgcattcacaaatttctatataaaaaattcgcagatagactctgctctaaagtatttggagatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="41704" stop="42840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42004" g_stop="42540" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E323735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42004" e_stop="42540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGAAAAGATGGAAAAGCATCAGGTAAAGTTTGACTGGCTCACATATGGAAACCTAGCTGGGATATATATCAATAACGGCTACCGTGATAAGGCGAATGATATTCTCCAAAAGATGGAGAAAATGAAAGATATGCATGACCGTGAAGCTTTCCATACCTTAATCACATTATATCAGAAAACATCTAATCCATCAGGAGTCAATCGCTCATGGGAATTATTAAAGTCAGTTTTCCCAACTCCCAGCAAGTTTAGCTATCTCATCGTGCTTTTGGCTCTATCCAAACTGGGGGACTCGGAAGCCCTTGAGAAACGTTTTAGAGAATTGGAGTCACATTGTAAATTCTTTGACATCAGAGTTTCAAATGTGATGATGGAGTCCTATCTTGACAGAAATATGATCGAAGAAGCAAATTTGCTTTATGAGAATGTGTTGAAGCAAGGCGTTGAACCCAACTTAAGGACTTACGATGCATTCACAAATTTCTATATAAAAAATTCGCAGATAGACTCTGCTCTAAAGTATTTGGAGATGG</genome_strand>
        <mrna_strand>TTCTTGAAAAGATGGAAAAGCATCAGGTAAAGTTTGACTGGCTCACATATGGAAACCTAGCTGGGATATATATCAATAACGGCTACCGTGATAAGGCGAATGATATTCTCCAAAAGATGGAGAAAATGAAAGATATGCATGACCGTGAAGCTTTCCATACCTTAATCACATTATATCAGAAAACATCTAATCCATCAGGAGTCAATCGCTCATGGGAATTATTAAAGTCAGTTTTCCCAACTCCCAGCAAGTTTAGCTATCTCATCGTGCTTTTGGCTCTATCCAAACTGGGGGACTCGGAAGCCCTTGAGAAACGTTTTAGAGAATTGGAGTCACATTGTAAATTCTTTGACATCAGAGTTTCAAATGTGATGATGGAGTCCTATCTTGACAGAAATATGATCGAAGAAGCAAATTTGCTTTATGAGAATGTGTTGAAGCAAGGCGTTGAACCCAACTTAAGGACTTACGATGCATTCACAAATTTCTATATAAAAAATTCGCAGATAGACTCTGCTCTAAAGTATTTGGAGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417523" ref_strand="+" ref_description="SGN-E417523 [STM-25-H17]">
      <seq>actcttttttaatcagtatagttcttcatttttgtaaagtacaaagagcattaaaaatagcaacatggaagtgtagagcgagatcgacagattccataccacttggactgggttgagaaactttgagcaatgagcctctcatgttttcctcaagaccatgaaggtgttcatagttccacttcagaggctgcagagtttgggcgtagaagagagtcataaacactggaatcgaggcgattaatcttcttcataatctcgcagaacttctcaactctaacagggtcattattgtcgtcctcaaaataagctagaaacatcttgatggattcatccttaggaaaccaaacttttttcttaggatttgccttgctggcacccatctccaaatacttcagagcaaagtctatctgcgaattttttatatagaaatttgtgaatgcatcgtaagtccttaagttgggttcaacgccttgtttcaacacattctgataaagcaaatttgcttcttcgatcatatttctgtcaagataggactccatcatcacatttgaaactctgatgtcatagaatttacaacctgactcccattctctaaaacgtttctcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="43201" stop="42008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42877" g_stop="42308" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="609" r_length="570" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E417523" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42877" e_stop="42308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAAGAGCATGAAAAAAATAGCAACATGGCAAATGTAGAGCGAAATCGACAGATTCCATACCACTTGGAGAGGGTTGAGAAACTTTGAGCAATGAGCCACTCATGTTATCCTCAAGAGCATGAAGGTGTTCATAGTTCCACTTCAGAGGCTGCAGAGTTTGTGCTTAGAAGAGAGTCATAAACACTGGAATCGAGGCGATTAATCTTCTTCATAATCTCGCAAAACTTCTCAGCTCTAACAGGATCATTA--CT-GTCCTCAAAATAAGCTAGAAACATCTTGATGGATTCATCCTTAGGAAACCAAACTTTTTTCTTAGGATTTGCCTTGCTGGCACCCATCTCCAAATACTTTAGAGCAGAGTCTATCTGCGAATTTTTTATATAGAAATTTGTGAATGCATCGTAAGTCCTTAAGTTGGGTTCAACGCCTTGCTTCAACACATTCTCATAAAGCAAATTTGCTTCTTCGATCATATTTCTGTCAAGATAGGACTCCATCATCACATTTGAAACTCTGATGTCAAAGAATTTACAATGTGACTCCAATTCTCTAAAACGTTTCTCAAGG</genome_strand>
        <mrna_strand>TACAAAGAGCAT--TAAAAATAGCAACATGG-AAGTGTAGAGCGAGATCGACAGATTCCATACCACTTGGACTGGGTTGAGAAACTTTGAGCAATGAGCCTCTCATGTTTTCCTCAAGACCATGAAGGTGTTCATAGTTCCACTTCAGAGGCTGCAGAGTTTGGGCGTAGAAGAGAGTCATAAACACTGGAATCGAGGCGATTAATCTTCTTCATAATCTCGCAGAACTTCTCAACTCTAACAGGGTCATTATTGTCGTCCTCAAAATAAGCTAGAAACATCTTGATGGATTCATCCTTAGGAAACCAAACTTTTTTCTTAGGATTTGCCTTGCTGGCACCCATCTCCAAATACTTCAGAGCAAAGTCTATCTGCGAATTTTTTATATAGAAATTTGTGAATGCATCGTAAGTCCTTAAGTTGGGTTCAACGCCTTGTTTCAACACATTCTGATAAAGCAAATTTGCTTCTTCGATCATATTTCTGTCAAGATAGGACTCCATCATCACATTTGAAACTCTGATGTCATAGAATTTACAACCTGACTCCCATTCTCTAAAACGTTTCTCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421302" ref_strand="-" ref_description="SGN-E421302 [STM-32-L11]">
      <seq>aagcaggacacacatttcttgacatgcgacttttgactcgagtctgtttgtacttgcccttatttttttgtctttaggaaatgatacatctgcccagaatgactggaggggtgcatggtggcatagcagtttcagtacccattcaggttattctgaggaagacagtccttattcaacaaagggtcagaagggaacattctattttgaattttctagggctttgagaaccatggatcgtcttcagcaggatgtgcaattcactatcggtcagcccagcaagttttcagctgcattttggtatccggaggatggaaatccatggcacggatcaggacattacacaattggttgtgactgggtacctctagatgttcctcctggttcatctgcaggcatcaaagtggtatcaagaagctcttgggatgctgccaatggttttgcttttctgttatctgttgtttcatttggtgtatccttttttgttgcttattgggttcataagaaaaatgccatctcttttcaacccattgatctttagtcttgtctttacctttttattatatttttatagagagggatggccatggaacattcttttgtaataagtgcatatcttatactcattgagtgacagaattagtgaatttgcaatttcattaggagataactcaattttgttttactttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="44559" stop="42864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44259" g_stop="44115" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44114" i_stop="43996" i_length="119">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43995" g_stop="43895" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="247" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43894" i_stop="43602" i_length="293">
            <donor d_prob="0.878" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43601" g_stop="43165" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="687" r_length="440" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="698"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E421302" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421302" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44259" e_stop="44115"/>
          <exon e_start="43995" e_stop="43895"/>
          <exon e_start="43601" e_stop="43165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGGACACAACATTCTTGACATGCGAGTTTTGGCTCGAGTCTGTTTGTACTTACCCTTA-ATTTTTGTTCTTAGGAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTCAGGTAACATCTTTCACCCTTGTCAAATCAGCATGGGTTTCATCTGTGCTCCTTCTTGATGATACTATAAAGTTGATTCTTCTTCTGGCATCTTCATTTCTTAAATGAACTTGTGTTGACAGGTTATTCTGAGGAAGACAGTCCTTATTCAACAAAGGGTCAGAAGGGAACATTCTATTTTGAATTTTCTAGGGCTCTGAGAACCATGGATCGTCTTCAGCAGGTAGTCTATCATCCTGATGTGTTTAGTCTCTTTGAGGCTTATGTTATCGATAATGTTGTCATACATTAGAAACCTCAGCATTAAATATAAACACCAAAAAAGTCCTAGGTGTATGTAAACATCGTCAATGAGACAGAAAAGGACAAAAAATTCAATTCCACATTGTCAATAGTCACTTGTTAAAACATCCATTGGCATGCTGTTTCATGCTTTCCCCCCTTTATTAGCAGCTGAAAAGAAAATAGTATGTGTTTAAAAGGGCTGCACTAATTAAGTTTGCTGTCGAGCTGTAGGATGTGCAATTCACTGTCGGTCAGTCAAGCAAGTTTTCAGCTGCATTTTGGTATCCGGAGGATGGAAATCCATGGCACGGATCAGGACATTACACGATTGGTTGTGACTGGGTACCTCTAGATGTTCCTCCTGGTTCATCTGCAGGCATCAAAGTGGTATCAAGAAGCTCTTGGGACGCTGCCAATGGTTTTGCTTTTCTGTTATCTGTTGTTTCATTTGGCGTATCCTTTTTTGTTGCTTATTGGGTTCATAAGAAAAATGCCATCTCTTTTCAACCCATTGATCTTTAATCTTGTCTTTACC--TTT-TTATATTTTTACATAGAGGGATGGCCATGGAATATTCTTTTGTAATAAGCGCATATCTTATACTCATTGAGTGACAGAATTAGTCTATTTGCAATTTCATTAGGAGATGACTCTATTTTGTTTTACTTTT</genome_strand>
        <mrna_strand>AAGCAGGACACACATTTCTTGACATGCGACTTTTGACTCGAGTCTGTTTGTACTTGCCCTTATTTTTTTGTCTTTAGGAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTCAG.......................................................................................................................GTTATTCTGAGGAAGACAGTCCTTATTCAACAAAGGGTCAGAAGGGAACATTCTATTTTGAATTTTCTAGGGCTTTGAGAACCATGGATCGTCTTCAGCAG.....................................................................................................................................................................................................................................................................................................GATGTGCAATTCACTATCGGTCAGCCCAGCAAGTTTTCAGCTGCATTTTGGTATCCGGAGGATGGAAATCCATGGCACGGATCAGGACATTACACAATTGGTTGTGACTGGGTACCTCTAGATGTTCCTCCTGGTTCATCTGCAGGCATCAAAGTGGTATCAAGAAGCTCTTGGGATGCTGCCAATGGTTTTGCTTTTCTGTTATCTGTTGTTTCATTTGGTGTATCCTTTTTTGTTGCTTATTGGGTTCATAAGAAAAATGCCATCTCTTTTCAACCCATTGATCTTTAGTCTTGTCTTTACCTTTTTATTATATTTTTATAGAGAGGGATGGCCATGGAACATTCTTTTGTAATAAGTGCATATCTTATACTCATTGAGTGACAGAATTAGTGAATTTGCAATTTCATTAGGAGATAACTCAATTTTGTTTTACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270590" ref_strand="+" ref_description="SGN-E270590 [cLEN-1-K11](-)">
      <seq>gtcaagcaagttttcagctgcattttggtatccggaggatggaaatccatggcacggatcaggacattacacgattggttgtgactgggtacctctagatgttcctcctggttcatctgcaggcatcaaagtggtatcaagaagctcttgggacgctgccaatggttttgcttttctgttatctgttgtttcatttggcgtatccttttttgttgcttattgggttcataagaaaaatgccatctcttttcaacccattgatctttaatcttgtctttacctttttatatttttacatagagggatggccatggaatattcttttgtaataagcgcatatcttaaactcattgagtgacagaattagtctatttgcaatttcattaggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="43878" stop="42888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43578" g_stop="43182" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E270590" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43578" e_stop="43182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGCAAGTTTTCAGCTGCATTTTGGTATCCGGAGGATGGAAATCCATGGCACGGATCAGGACATTACACGATTGGTTGTGACTGGGTACCTCTAGATGTTCCTCCTGGTTCATCTGCAGGCATCAAAGTGGTATCAAGAAGCTCTTGGGACGCTGCCAATGGTTTTGCTTTTCTGTTATCTGTTGTTTCATTTGGCGTATCCTTTTTTGTTGCTTATTGGGTTCATAAGAAAAATGCCATCTCTTTTCAACCCATTGATCTTTAATCTTGTCTTTACCTTTTTATATTTTTACATAGAGGGATGGCCATGGAATATTCTTTTGTAATAAGCGCATATCTTATACTCATTGAGTGACAGAATTAGTCTATTTGCAATTTCATTAGGAGATGACTC</genome_strand>
        <mrna_strand>GTCAAGCAAGTTTTCAGCTGCATTTTGGTATCCGGAGGATGGAAATCCATGGCACGGATCAGGACATTACACGATTGGTTGTGACTGGGTACCTCTAGATGTTCCTCCTGGTTCATCTGCAGGCATCAAAGTGGTATCAAGAAGCTCTTGGGACGCTGCCAATGGTTTTGCTTTTCTGTTATCTGTTGTTTCATTTGGCGTATCCTTTTTTGTTGCTTATTGGGTTCATAAGAAAAATGCCATCTCTTTTCAACCCATTGATCTTTAATCTTGTCTTTACCTTTTTATATTTTTACATAGAGGGATGGCCATGGAATATTCTTTTGTAATAAGCGCATATCTTAAACTCATTGAGTGACAGAATTAGTCTATTTGCAATTTCATTAGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543291" ref_strand="+" ref_description="SGN-E543291 [TUS-65-A13](-)">
      <seq>caagttgtgagagtgccacatatcatagtatgggtgggtgtaagcaatcacctgatgcatgcaacaaaaaaacttgtcgtgggcacgaagtcgatatcatgcacttctcaattggaaatgctatccctggcagattgtatggtggaaacccagtcgacaacagagatggtaatgggggagacagatttggtcatctagtcgatttatatgcttggagcccacactgtatgaatttggatggggttagttctacaggaaatgatacatctgcccagaatgactggaggggtgcatggtggcatagcagtttcagtacccattcaggttattctgaggaagacagtccttattcaacaaagggtcagaagggaacattctattttgaattttctagggctctgagaaccatggatcgtcttcagcaggatgtgcaattcactgtcggtcagtcaagcaagttttcagctgcattttggtatccggaggatggaaatccatggcacggatcaggacattacacgattggttgtgactgggtacctctagatgttcctcctggttcatctgcaggcatcaaagtggtatcaagaagctcttgggacgctgccaatggttttgcttttctgttatctgttgtttcatttggcgtatccttttttgttgcttattgggttcataagaaaaatgccatctcttttcaacccattgatctttaatcttgtctttacctttttatatttttacatagagggatggccatggaatattcttttgtaataagcgcatatcttatactcattgagtgacagaattagtctatttgcaatttcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="45728" stop="42888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45428" g_stop="45399" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45398" i_stop="45263" i_length="136">
            <donor d_prob="0.783" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45262" g_stop="45108" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="184" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45107" i_stop="45024" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45023" g_stop="44953" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="255" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44952" i_stop="44184" i_length="769">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44183" g_stop="44115" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="324" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44114" i_stop="43996" i_length="119">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43995" g_stop="43895" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="425" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43894" i_stop="43602" i_length="293">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43601" g_stop="43184" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="843" r_length="418" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E543291" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45428" e_stop="45399"/>
          <exon e_start="45262" e_stop="45108"/>
          <exon e_start="45023" e_stop="44953"/>
          <exon e_start="44183" e_stop="44115"/>
          <exon e_start="43995" e_stop="43895"/>
          <exon e_start="43601" e_stop="43184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTGGTGAGAGTGCCACATATCATAGTGTAAGTTGTGCTCGTTTGTTTACGGGTTATGCTAACTTCTGCAAATGTGTCTATCCAGAAAAGGAAAATACAGCTTTCTTGTGTTTCTGTTTGATATCTTTTATTGCCTAAAATGTGGATTAAATTGTTGGAATAGATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAGGTAAATTTTTATACACTATTATCTTGTTTATAAACACTTACAGAATTCTCCAACTTATCTTTACTATGTTCACATTGTCAACAGATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGGGTTAGTTCTACAGGTAAGAATGTCATTCGAGTTGTTGGCACTCAAACTCTGGAACGTGTACTAGAGTATTATACTGATCACCTATCAATTAATACTTGGATCTTGATTGTCCTTCGTAAATGGGGATAGAAGCATATGGAGAAGAGGAATAGAAAGAAAAATTTGACTGATGCAAGTACCGAGGTTACAAAATTTACAGCTGACCTTAATACTTGTGGTTCATTTTTGCGGATCTATAACAGTAACCATGTAGGGTTGTTTCTTGGTTGTTGTTTTGATCTCTTTTATTTCATTGGAACTTACCATGCACCCAAAGACTTGGTGTCTGTTCTATGAGATGCAACTAAAAAAGAAATTACATTTTAATGAATTATATATATAGCATATAAATTGAATGATTGAAAAAAAATATCAGATCGTATTTCTAAATCTGGTTGCTACCCTGGTGGAAATGTAATAGCACGGTCTACCTTTGTTGTTGCGTTGGTGGAAATTTAATATCAGATGGATGATCAAACAAACATATTGTCTAAGAGGTTGAAGGAAGAGAAAATCTTGAATTTATCCTAGTCCCTGCTTGTTGACTTAGAAGTGGTCTATTAAGAAAGAGGACTTTAACGCACACATGTTTGTGATGTCTTCTTCAACTATGATATGCATGCCTTCATTCTTGTGATTTTGGCGATCTTGTTTCTGCTATATCTATAAGCAGGACACAACATTCTTGACATGCGAGTTTTGGCTCGAGTCTGTTTGTACTTACCCTTAATTTTTGTTCTTAGGAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTCAGGTAACATCTTTCACCCTTGTCAAATCAGCATGGGTTTCATCTGTGCTCCTTCTTGATGATACTATAAAGTTGATTCTTCTTCTGGCATCTTCATTTCTTAAATGAACTTGTGTTGACAGGTTATTCTGAGGAAGACAGTCCTTATTCAACAAAGGGTCAGAAGGGAACATTCTATTTTGAATTTTCTAGGGCTCTGAGAACCATGGATCGTCTTCAGCAGGTAGTCTATCATCCTGATGTGTTTAGTCTCTTTGAGGCTTATGTTATCGATAATGTTGTCATACATTAGAAACCTCAGCATTAAATATAAACACCAAAAAAGTCCTAGGTGTATGTAAACATCGTCAATGAGACAGAAAAGGACAAAAAATTCAATTCCACATTGTCAATAGTCACTTGTTAAAACATCCATTGGCATGCTGTTTCATGCTTTCCCCCCTTTATTAGCAGCTGAAAAGAAAATAGTATGTGTTTAAAAGGGCTGCACTAATTAAGTTTGCTGTCGAGCTGTAGGATGTGCAATTCACTGTCGGTCAGTCAAGCAAGTTTTCAGCTGCATTTTGGTATCCGGAGGATGGAAATCCATGGCACGGATCAGGACATTACACGATTGGTTGTGACTGGGTACCTCTAGATGTTCCTCCTGGTTCATCTGCAGGCATCAAAGTGGTATCAAGAAGCTCTTGGGACGCTGCCAATGGTTTTGCTTTTCTGTTATCTGTTGTTTCATTTGGCGTATCCTTTTTTGTTGCTTATTGGGTTCATAAGAAAAATGCCATCTCTTTTCAACCCATTGATCTTTAATCTTGTCTTTACCTTTTTATATTTTTACATAGAGGGATGGCCATGGAATATTCTTTTGTAATAAGCGCATATCTTATACTCATTGAGTGACAGAATTAGTCTATTTGCAATTTCATTAGGAGATGAC</genome_strand>
        <mrna_strand>CAAGTT-GTGAGAGTGCCACATATCATAGT........................................................................................................................................ATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAG....................................................................................ATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGGGTTAGTTCTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTCAG.......................................................................................................................GTTATTCTGAGGAAGACAGTCCTTATTCAACAAAGGGTCAGAAGGGAACATTCTATTTTGAATTTTCTAGGGCTCTGAGAACCATGGATCGTCTTCAGCAG.....................................................................................................................................................................................................................................................................................................GATGTGCAATTCACTGTCGGTCAGTCAAGCAAGTTTTCAGCTGCATTTTGGTATCCGGAGGATGGAAATCCATGGCACGGATCAGGACATTACACGATTGGTTGTGACTGGGTACCTCTAGATGTTCCTCCTGGTTCATCTGCAGGCATCAAAGTGGTATCAAGAAGCTCTTGGGACGCTGCCAATGGTTTTGCTTTTCTGTTATCTGTTGTTTCATTTGGCGTATCCTTTTTTGTTGCTTATTGGGTTCATAAGAAAAATGCCATCTCTTTTCAACCCATTGATCTTTAATCTTGTCTTTACCTTTTTATATTTTTACATAGAGGGATGGCCATGGAATATTCTTTTGTAATAAGCGCATATCTTATACTCATTGAGTGACAGAATTAGTCTATTTGCAATTTCATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737247" ref_strand="+" ref_description="SGN-E737247 [LC09AA08]">
      <seq>ctagttctctctgaacattctattttgaattttctagggctctgagaaccatggatcgtcttcagcaggatgtgcaattcactgtcggtcagtcaagcaagttttcagctgcattttggtatccggaggatggaaatccatggcacggatcaggacattacacgattggttgtgactgggtacctctagatgttcctcctggttcatctgcaggcatcaaagtggtatcaagaagctcttgggacgctgccaatggttttgcttttctgttatctgttgtttcatttggcgtatccttttttgttgcttattgggttcataagaaaaatgccatctcttttcaacccattgatctttaatcttgtctttacctttttatatttttacatagagggatggccatggaatattcttttgtaataagcgcatatcttatactcattgagtgacagaattagtctatttgcaatttcattaggagatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="44250" stop="42885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43962" g_stop="43895" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.853"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43894" i_stop="43602" i_length="293">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43601" g_stop="43185" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="485" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="486" polyA_stop="497"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E737247" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43962" e_stop="43895"/>
          <exon e_start="43601" e_stop="43185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTCAGAAGGGAACATTCTATTTTGAATTTTCTAGGGCTCTGAGAACCATGGATCGTCTTCAGCAGGTAGTCTATCATCCTGATGTGTTTAGTCTCTTTGAGGCTTATGTTATCGATAATGTTGTCATACATTAGAAACCTCAGCATTAAATATAAACACCAAAAAAGTCCTAGGTGTATGTAAACATCGTCAATGAGACAGAAAAGGACAAAAAATTCAATTCCACATTGTCAATAGTCACTTGTTAAAACATCCATTGGCATGCTGTTTCATGCTTTCCCCCCTTTATTAGCAGCTGAAAAGAAAATAGTATGTGTTTAAAAGGGCTGCACTAATTAAGTTTGCTGTCGAGCTGTAGGATGTGCAATTCACTGTCGGTCAGTCAAGCAAGTTTTCAGCTGCATTTTGGTATCCGGAGGATGGAAATCCATGGCACGGATCAGGACATTACACGATTGGTTGTGACTGGGTACCTCTAGATGTTCCTCCTGGTTCATCTGCAGGCATCAAAGTGGTATCAAGAAGCTCTTGGGACGCTGCCAATGGTTTTGCTTTTCTGTTATCTGTTGTTTCATTTGGCGTATCCTTTTTTGTTGCTTATTGGGTTCATAAGAAAAATGCCATCTCTTTTCAACCCATTGATCTTTAATCTTGTCTTTACCTTTTTATATTTTTACATAGAGGGATGGCCATGGAATATTCTTTTGTAATAAGCGCATATCTTATACTCATTGAGTGACAGAATTAGTCTATTTGCAATTTCATTAGGAGATGA</genome_strand>
        <mrna_strand>CTAGTTCTCTCTGAACATTCTATTTTGAATTTTCTAGGGCTCTGAGAACCATGGATCGTCTTCAGCAG.....................................................................................................................................................................................................................................................................................................GATGTGCAATTCACTGTCGGTCAGTCAAGCAAGTTTTCAGCTGCATTTTGGTATCCGGAGGATGGAAATCCATGGCACGGATCAGGACATTACACGATTGGTTGTGACTGGGTACCTCTAGATGTTCCTCCTGGTTCATCTGCAGGCATCAAAGTGGTATCAAGAAGCTCTTGGGACGCTGCCAATGGTTTTGCTTTTCTGTTATCTGTTGTTTCATTTGGCGTATCCTTTTTTGTTGCTTATTGGGTTCATAAGAAAAATGCCATCTCTTTTCAACCCATTGATCTTTAATCTTGTCTTTACCTTTTTATATTTTTACATAGAGGGATGGCCATGGAATATTCTTTTGTAATAAGCGCATATCTTATACTCATTGAGTGACAGAATTAGTCTATTTGCAATTTCATTAGGAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299268" ref_strand="+" ref_description="SGN-E299268 [cLET-43-M16]">
      <seq>ttggatggggttagttctacaggaaatgatacatctgcccagaatgactggaggggtgcatggtggcatagcagtttcagtacccattcaggttattctgaggaagacagtccttattcaacaaagggtcagaagggaacattctattttgaattttctagggctctgagaaccatggatcgtcttcagcaggatgtgcaattcactgtcggtcagtcaagcaagttttcagctgcattttggtatccggaggatggaaatccatggcacggatcaggacattacacgattggttgtgactgggtacctctagatgttcctcctggttcatctgcaggcatcaaagaggtatcaagaagctcttgggacgctgccaatggttttgcttttctgatatctgttgtttcatttggcgtatccttttttgttgcttattgggttcataagaaaaatgccatctcttttcaacccattgatctttaatgttgggtggacctttttatatttttacatacagggatggccatggaatattcttttgtaataagcgcatatcttatactcattgagtgacagaattagtctatttgcaatttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="45274" stop="42896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44974" g_stop="44953" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44952" i_stop="44184" i_length="769">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44183" g_stop="44115" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="91" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44114" i_stop="43996" i_length="119">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43995" g_stop="43895" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="192" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43894" i_stop="43602" i_length="293">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43601" g_stop="43190" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="604" r_length="412" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E299268" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44974" e_stop="44953"/>
          <exon e_start="44183" e_stop="44115"/>
          <exon e_start="43995" e_stop="43895"/>
          <exon e_start="43601" e_stop="43190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGGGGTTAGTTCTACAGGTAAGAATGTCATTCGAGTTGTTGGCACTCAAACTCTGGAACGTGTACTAGAGTATTATACTGATCACCTATCAATTAATACTTGGATCTTGATTGTCCTTCGTAAATGGGGATAGAAGCATATGGAGAAGAGGAATAGAAAGAAAAATTTGACTGATGCAAGTACCGAGGTTACAAAATTTACAGCTGACCTTAATACTTGTGGTTCATTTTTGCGGATCTATAACAGTAACCATGTAGGGTTGTTTCTTGGTTGTTGTTTTGATCTCTTTTATTTCATTGGAACTTACCATGCACCCAAAGACTTGGTGTCTGTTCTATGAGATGCAACTAAAAAAGAAATTACATTTTAATGAATTATATATATAGCATATAAATTGAATGATTGAAAAAAAATATCAGATCGTATTTCTAAATCTGGTTGCTACCCTGGTGGAAATGTAATAGCACGGTCTACCTTTGTTGTTGCGTTGGTGGAAATTTAATATCAGATGGATGATCAAACAAACATATTGTCTAAGAGGTTGAAGGAAGAGAAAATCTTGAATTTATCCTAGTCCCTGCTTGTTGACTTAGAAGTGGTCTATTAAGAAAGAGGACTTTAACGCACACATGTTTGTGATGTCTTCTTCAACTATGATATGCATGCCTTCATTCTTGTGATTTTGGCGATCTTGTTTCTGCTATATCTATAAGCAGGACACAACATTCTTGACATGCGAGTTTTGGCTCGAGTCTGTTTGTACTTACCCTTAATTTTTGTTCTTAGGAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTCAGGTAACATCTTTCACCCTTGTCAAATCAGCATGGGTTTCATCTGTGCTCCTTCTTGATGATACTATAAAGTTGATTCTTCTTCTGGCATCTTCATTTCTTAAATGAACTTGTGTTGACAGGTTATTCTGAGGAAGACAGTCCTTATTCAACAAAGGGTCAGAAGGGAACATTCTATTTTGAATTTTCTAGGGCTCTGAGAACCATGGATCGTCTTCAGCAGGTAGTCTATCATCCTGATGTGTTTAGTCTCTTTGAGGCTTATGTTATCGATAATGTTGTCATACATTAGAAACCTCAGCATTAAATATAAACACCAAAAAAGTCCTAGGTGTATGTAAACATCGTCAATGAGACAGAAAAGGACAAAAAATTCAATTCCACATTGTCAATAGTCACTTGTTAAAACATCCATTGGCATGCTGTTTCATGCTTTCCCCCCTTTATTAGCAGCTGAAAAGAAAATAGTATGTGTTTAAAAGGGCTGCACTAATTAAGTTTGCTGTCGAGCTGTAGGATGTGCAATTCACTGTCGGTCAGTCAAGCAAGTTTTCAGCTGCATTTTGGTATCCGGAGGATGGAAATCCATGGCACGGATCAGGACATTACACGATTGGTTGTGACTGGGTACCTCTAGATGTTCCTCCTGGTTCATCTGCAGGCATCAAAGTGGTATCAAGAAGCTCTTGGGACGCTGCCAATGGTTTTGCTTTTCTGTTATCTGTTGTTTCATTTGGCGTATCCTTTTTTGTTGCTTATTGGGTTCATAAGAAAAATGCCATCTCTTTTCAACCCATTGATCTTTAATCTTGTCTTTACCTTTTTATATTTTTACATAGAGGGATGGCCATGGAATATTCTTTTGTAATAAGCGCATATCTTATACTCATTGAGTGACAGAATTAGTCTATTTGCAATTTCATTAGGA</genome_strand>
        <mrna_strand>TTGGATGGGGTTAGTTCTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTCAG.......................................................................................................................GTTATTCTGAGGAAGACAGTCCTTATTCAACAAAGGGTCAGAAGGGAACATTCTATTTTGAATTTTCTAGGGCTCTGAGAACCATGGATCGTCTTCAGCAG.....................................................................................................................................................................................................................................................................................................GATGTGCAATTCACTGTCGGTCAGTCAAGCAAGTTTTCAGCTGCATTTTGGTATCCGGAGGATGGAAATCCATGGCACGGATCAGGACATTACACGATTGGTTGTGACTGGGTACCTCTAGATGTTCCTCCTGGTTCATCTGCAGGCATCAAAGAGGTATCAAGAAGCTCTTGGGACGCTGCCAATGGTTTTGCTTTTCTGATATCTGTTGTTTCATTTGGCGTATCCTTTTTTGTTGCTTATTGGGTTCATAAGAAAAATGCCATCTCTTTTCAACCCATTGATCTTTAATGTTGGGTGGACCTTTTTATATTTTTACATACAGGGATGGCCATGGAATATTCTTTTGTAATAAGCGCATATCTTATACTCATTGAGTGACAGAATTAGTCTATTTGCAATTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747291" ref_strand="+" ref_description="SGN-E747291 [GI|47104671]">
      <seq>tttggatggggttagttctacaggaaatgatacatctgcccagaatgactggaggggtgcatggtggcatagcagtttcagtacccattcaggttattctgaggaagacagtccttattcaacaaagggtcagaagggaacattctattttgaattttctagggctctgagaaccatggatcgtcttcagcaggatgtgcaattcactgtcggtcagtcaagcaagttttcagctgcattttggtatccggaggatggaaatccatggcacggatcaggacattacacgattggttgtgactgggtacctctagatgttcctcctggttcatctgcaggcatcaaagtggtatcaagaagctcttgggacgctgccaatggttttgcttttctgttatctgttgtttcatttggcgtatccttttttgttgcttattgggttcataagaaaaatgccatctcttttcaacccattgatctttaatcttgtctttacctttttatatttttacatagagggatggccatggaatattcttttgtaataagcgcatatcttatactcattgagtgacagaattagtctatttgcaatttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="45275" stop="42888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44975" g_stop="44953" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44952" i_stop="44184" i_length="769">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44183" g_stop="44115" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="92" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44114" i_stop="43996" i_length="119">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43995" g_stop="43895" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="193" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43894" i_stop="43602" i_length="293">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43601" g_stop="43197" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="598" r_length="405" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="618"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E747291" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44975" e_stop="44953"/>
          <exon e_start="44183" e_stop="44115"/>
          <exon e_start="43995" e_stop="43895"/>
          <exon e_start="43601" e_stop="43197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGATGGGGTTAGTTCTACAGGTAAGAATGTCATTCGAGTTGTTGGCACTCAAACTCTGGAACGTGTACTAGAGTATTATACTGATCACCTATCAATTAATACTTGGATCTTGATTGTCCTTCGTAAATGGGGATAGAAGCATATGGAGAAGAGGAATAGAAAGAAAAATTTGACTGATGCAAGTACCGAGGTTACAAAATTTACAGCTGACCTTAATACTTGTGGTTCATTTTTGCGGATCTATAACAGTAACCATGTAGGGTTGTTTCTTGGTTGTTGTTTTGATCTCTTTTATTTCATTGGAACTTACCATGCACCCAAAGACTTGGTGTCTGTTCTATGAGATGCAACTAAAAAAGAAATTACATTTTAATGAATTATATATATAGCATATAAATTGAATGATTGAAAAAAAATATCAGATCGTATTTCTAAATCTGGTTGCTACCCTGGTGGAAATGTAATAGCACGGTCTACCTTTGTTGTTGCGTTGGTGGAAATTTAATATCAGATGGATGATCAAACAAACATATTGTCTAAGAGGTTGAAGGAAGAGAAAATCTTGAATTTATCCTAGTCCCTGCTTGTTGACTTAGAAGTGGTCTATTAAGAAAGAGGACTTTAACGCACACATGTTTGTGATGTCTTCTTCAACTATGATATGCATGCCTTCATTCTTGTGATTTTGGCGATCTTGTTTCTGCTATATCTATAAGCAGGACACAACATTCTTGACATGCGAGTTTTGGCTCGAGTCTGTTTGTACTTACCCTTAATTTTTGTTCTTAGGAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTCAGGTAACATCTTTCACCCTTGTCAAATCAGCATGGGTTTCATCTGTGCTCCTTCTTGATGATACTATAAAGTTGATTCTTCTTCTGGCATCTTCATTTCTTAAATGAACTTGTGTTGACAGGTTATTCTGAGGAAGACAGTCCTTATTCAACAAAGGGTCAGAAGGGAACATTCTATTTTGAATTTTCTAGGGCTCTGAGAACCATGGATCGTCTTCAGCAGGTAGTCTATCATCCTGATGTGTTTAGTCTCTTTGAGGCTTATGTTATCGATAATGTTGTCATACATTAGAAACCTCAGCATTAAATATAAACACCAAAAAAGTCCTAGGTGTATGTAAACATCGTCAATGAGACAGAAAAGGACAAAAAATTCAATTCCACATTGTCAATAGTCACTTGTTAAAACATCCATTGGCATGCTGTTTCATGCTTTCCCCCCTTTATTAGCAGCTGAAAAGAAAATAGTATGTGTTTAAAAGGGCTGCACTAATTAAGTTTGCTGTCGAGCTGTAGGATGTGCAATTCACTGTCGGTCAGTCAAGCAAGTTTTCAGCTGCATTTTGGTATCCGGAGGATGGAAATCCATGGCACGGATCAGGACATTACACGATTGGTTGTGACTGGGTACCTCTAGATGTTCCTCCTGGTTCATCTGCAGGCATCAAAGTGGTATCAAGAAGCTCTTGGGACGCTGCCAATGGTTTTGCTTTTCTGTTATCTGTTGTTTCATTTGGCGTATCCTTTTTTGTTGCTTATTGGGTTCATAAGAAAAATGCCATCTCTTTTCAACCCATTGATCTTTAATCTTGTCTTTACCTTTTTATATTTTTACATAGAGGGATGGCCATGGAATATTCTTTTGTAATAAGCGCATATCTTATACTCATTGAGTGACAGAATTAGTCTATTTGCAATTTC</genome_strand>
        <mrna_strand>TTTGGATGGGGTTAGTTCTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTCAG.......................................................................................................................GTTATTCTGAGGAAGACAGTCCTTATTCAACAAAGGGTCAGAAGGGAACATTCTATTTTGAATTTTCTAGGGCTCTGAGAACCATGGATCGTCTTCAGCAG.....................................................................................................................................................................................................................................................................................................GATGTGCAATTCACTGTCGGTCAGTCAAGCAAGTTTTCAGCTGCATTTTGGTATCCGGAGGATGGAAATCCATGGCACGGATCAGGACATTACACGATTGGTTGTGACTGGGTACCTCTAGATGTTCCTCCTGGTTCATCTGCAGGCATCAAAGTGGTATCAAGAAGCTCTTGGGACGCTGCCAATGGTTTTGCTTTTCTGTTATCTGTTGTTTCATTTGGCGTATCCTTTTTTGTTGCTTATTGGGTTCATAAGAAAAATGCCATCTCTTTTCAACCCATTGATCTTTAATCTTGTCTTTACCTTTTTATATTTTTACATAGAGGGATGGCCATGGAATATTCTTTTGTAATAAGCGCATATCTTATACTCATTGAGTGACAGAATTAGTCTATTTGCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269447" ref_strand="+" ref_description="SGN-E269447 [cLEM-2-E14]">
      <seq>ctcgtgccgaataattgcccatctgtagcactgatgtttcaagttggtgagagtgccacatatcatagtatgggtgggtgtaagcaatcacctgatgcatgcaacaaaaaaacttgtcgtgggcacgaagtcgatatcatgcacttctcaattggaaatgctatccctggcagattgtatggtggaaacccagtcgacaacagagatggtaatgggggagacagatttggtcatctagtcgatttatatgcttggagcccacactgtatgaatttggatggggttagttctacaggaaatgatacatctgcccagaatgactggaggggtgcatggtggcatagcagtttcagtacccattcaggttattctgaggaagacagtccttattcaacaaagggtcagaagggaacattctattttgaattttctagggctctgagaaccatggatcgtcttcagcaggatgtgcaattcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="45762" stop="43584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45465" g_stop="45399" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="69" r_length="68" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45398" i_stop="45263" i_length="136">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45262" g_stop="45108" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="224" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45107" i_stop="45024" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45023" g_stop="44953" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="295" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44952" i_stop="44184" i_length="769">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44183" g_stop="44115" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="364" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44114" i_stop="43996" i_length="119">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43995" g_stop="43895" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="465" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43894" i_stop="43602" i_length="293">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43601" g_stop="43587" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="480" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E269447" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45465" e_stop="45399"/>
          <exon e_start="45262" e_stop="45108"/>
          <exon e_start="45023" e_stop="44953"/>
          <exon e_start="44183" e_stop="44115"/>
          <exon e_start="43995" e_stop="43895"/>
          <exon e_start="43601" e_stop="43587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGAC-AATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGTGTAAGTTGTGCTCGTTTGTTTACGGGTTATGCTAACTTCTGCAAATGTGTCTATCCAGAAAAGGAAAATACAGCTTTCTTGTGTTTCTGTTTGATATCTTTTATTGCCTAAAATGTGGATTAAATTGTTGGAATAGATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAGGTAAATTTTTATACACTATTATCTTGTTTATAAACACTTACAGAATTCTCCAACTTATCTTTACTATGTTCACATTGTCAACAGATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGGGTTAGTTCTACAGGTAAGAATGTCATTCGAGTTGTTGGCACTCAAACTCTGGAACGTGTACTAGAGTATTATACTGATCACCTATCAATTAATACTTGGATCTTGATTGTCCTTCGTAAATGGGGATAGAAGCATATGGAGAAGAGGAATAGAAAGAAAAATTTGACTGATGCAAGTACCGAGGTTACAAAATTTACAGCTGACCTTAATACTTGTGGTTCATTTTTGCGGATCTATAACAGTAACCATGTAGGGTTGTTTCTTGGTTGTTGTTTTGATCTCTTTTATTTCATTGGAACTTACCATGCACCCAAAGACTTGGTGTCTGTTCTATGAGATGCAACTAAAAAAGAAATTACATTTTAATGAATTATATATATAGCATATAAATTGAATGATTGAAAAAAAATATCAGATCGTATTTCTAAATCTGGTTGCTACCCTGGTGGAAATGTAATAGCACGGTCTACCTTTGTTGTTGCGTTGGTGGAAATTTAATATCAGATGGATGATCAAACAAACATATTGTCTAAGAGGTTGAAGGAAGAGAAAATCTTGAATTTATCCTAGTCCCTGCTTGTTGACTTAGAAGTGGTCTATTAAGAAAGAGGACTTTAACGCACACATGTTTGTGATGTCTTCTTCAACTATGATATGCATGCCTTCATTCTTGTGATTTTGGCGATCTTGTTTCTGCTATATCTATAAGCAGGACACAACATTCTTGACATGCGAGTTTTGGCTCGAGTCTGTTTGTACTTACCCTTAATTTTTGTTCTTAGGAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTCAGGTAACATCTTTCACCCTTGTCAAATCAGCATGGGTTTCATCTGTGCTCCTTCTTGATGATACTATAAAGTTGATTCTTCTTCTGGCATCTTCATTTCTTAAATGAACTTGTGTTGACAGGTTATTCTGAGGAAGACAGTCCTTATTCAACAAAGGGTCAGAAGGGAACATTCTATTTTGAATTTTCTAGGGCTCTGAGAACCATGGATCGTCTTCAGCAGGTAGTCTATCATCCTGATGTGTTTAGTCTCTTTGAGGCTTATGTTATCGATAATGTTGTCATACATTAGAAACCTCAGCATTAAATATAAACACCAAAAAAGTCCTAGGTGTATGTAAACATCGTCAATGAGACAGAAAAGGACAAAAAATTCAATTCCACATTGTCAATAGTCACTTGTTAAAACATCCATTGGCATGCTGTTTCATGCTTTCCCCCCTTTATTAGCAGCTGAAAAGAAAATAGTATGTGTTTAAAAGGGCTGCACTAATTAAGTTTGCTGTCGAGCTGTAGGATGTGCAATTCACT</genome_strand>
        <mrna_strand>TCGTGCCGAATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGT........................................................................................................................................ATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAG....................................................................................ATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGGGTTAGTTCTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTCAG.......................................................................................................................GTTATTCTGAGGAAGACAGTCCTTATTCAACAAAGGGTCAGAAGGGAACATTCTATTTTGAATTTTCTAGGGCTCTGAGAACCATGGATCGTCTTCAGCAG.....................................................................................................................................................................................................................................................................................................GATGTGCAATTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254258" ref_strand="+" ref_description="SGN-E254258 [cLEG-27-G4]">
      <seq>tcgtctcttcccatcaagaatccggcaactggcattgcgaaaccgatgaagtatcccgtatttctgcggagttcaggcctggagtcgtaacccttgatggacacgctgatgattgggaaaatattgaaggatttgagttttctctccttcctgctcttgacccagatcatgaccatgaatacaaaggggggaaaatgaccgttaaggctttacacgatgggaaagatgtctactttttgttgcaagtagatggagaatatgtatacaagaaaggaaatgacaataattgcccatctgtagcactgatgtttcaagttggtgagagtgccacatatcatagtatgggtgggtgtaagcaatcacctgatgcatgcaacaaaaaaacttgtcgtgggcacgaagtcgatatcatgcacttctcaattggaaatgctatccctggcagattgtatggtggaaacccagtcgacaacagagatggtaatgggggagacagatttggtcatctagtcgatttatatgcttggagcccacactgtatgaatttggatggggttagttctacaggaaatgatacatctgcccagaatgactggaggggtgcatggtggcatagcagtttcagtacccattcangttattctgaggaagacagtccttattcaacaaagggtcagaagggaacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="49453" stop="43643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49153" g_stop="48948" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48947" i_stop="48878" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48877" g_stop="48810" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="274" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48809" i_stop="45466" i_length="3344">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45465" g_stop="45399" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="341" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45398" i_stop="45263" i_length="136">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45262" g_stop="45108" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="496" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45107" i_stop="45024" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45023" g_stop="44953" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="567" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44952" i_stop="44184" i_length="769">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44183" g_stop="44115" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="636" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44114" i_stop="43996" i_length="119">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43995" g_stop="43943" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="689" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E254258" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49153" e_stop="48948"/>
          <exon e_start="48877" e_stop="48810"/>
          <exon e_start="45465" e_stop="45399"/>
          <exon e_start="45262" e_stop="45108"/>
          <exon e_start="45023" e_stop="44953"/>
          <exon e_start="44183" e_stop="44115"/>
          <exon e_start="43995" e_stop="43943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGATGAAGTATCCCGTATTTCTGCGGAGTTCAGGCCTGGAGTCGTAACCCTTGATGGACACGCTGATGATTGGGAAAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATACAAAGGGGGGAAAATGACCGTTAAGGTATTATTAGATTCTTCTACAATGATTTCCTTGATTTGTTTTCTTGGGTTACTTACTTGATTTTGATTAGGCTTTACACGATGGGAAAGATGTCTACTTTTTGTTGCAAGTAGATGGAGAATATGTATACAAGAAAGGGTGAGTAAATGCTCTCAATAATTACCTATCTTGTGGGATTTTGGGATTTATTTAGTGACCTTGTGCTGGAACTATTCCTGTTTTTAGACTGTTGCTTATTGGAAAATTGATTATTAAATTACATACCTTATTTGGCATTGAGGTAACATCATTGGTGGTGTAGTTTCTCGTTTCTTTCTTTAACATGCTAAATCCTCAAGGCATTTCATGCTTCTTTAGAAATTTGAAGTTACCTTTCTTTTGATGTCTGTGAATCTATGCATTGCTACCCATTGGGTTTGAGAGACTTCCCAATATAGATTTTTTTTTGCTGAAAGACACTTGAAAAACAAATTTGTGTAAGTTATTCTAATGGATTTCTTCTAAATTAAAAATAGCTCTACTATGAAACTCGTTAGCAAAGGGTAATCTCCTTAATTAGAAGTTTAATGATTTTAATATGTCTTGTAGCTTGCTCTATTTTTAGGGAAAAGGAGACGTCTTATGAATTCTTTTTGTTCAACAAATTCCTAAATTGAACTCAATGAAATTGTAAATCAATTAGGAAACAGATAAATGAAATTTGTCAAAGTCAAACTAATCAGGAATAAGAAGAAAACATATTTCCGTCAACACGGCTGTAGAAATGATATTGCATAAACAGGGTGCCTCCCTCCTCCTTTCCCTATTCATGCATCATAAAGATGTCATATGATCGCCCCCTTACTTCCTCTTTCACCTCTATTACATTGTCCCACACTGGTTGAGGGAATAGTTTCTTGTCTCCTTATATAGTCTTGGGTAATCCTAGGTGCTGTCTCTGAAAAAAATGAAGGATCTGTCAGGTTTACATTATTTTCTACCTAAATTTGTGAAAAATCGTGATTTTGAGGGTTATTCAATCTTGACATGTAAGGTTTTGATGGCAAGGATGTGCACTATTCCCTAGTTGTGGTTTTTGAGGGTTATTCAATATTGACATGTAAGGTTTTGATTGCAAGGATGTGCACTATTTCCTAGTTGTGGTTGGGAAGAAGGGAAGCCAGATTTGGGAGTTAGAGATGAACTTCTGAAATAATAAAAAAAGAAAGTCACACTGGATTGAGCTTTAGTGGGGAAGATTTTCTTAGGTCTAGTTAAGTTTGAAATGAACTAAAACAAATGGAAAAAGACTAGTGTATTAGCATGAGGCAATGTTTAGGATAAAGACGAGAACAAGATGAGTGAGCCAAAAAGTTGACAGTGCTTGACATTTGCCCAAATAAATTTAAGGTAGCATTCAAGTGGTATTAGCGAGTGAATTTCCTGAAAATTTTGGTCCAAAGTGGAAGGTTGTAAGATGAGGTGATGCATGGAAAATGTGCTTTATTTACTTTTAACGGTTGGGGTGGGGGAAAACATTATAATTTCTGTAACATTGTCGAAGAGCCTTCCATCACGGTCAGTCAACAATTACTGCAAGCATGTGCCCTAGAAGATCATTTCTATCTGCACTGGTATACTTTCATCACATAATCATTGTCTCAAATAATGTGAGATATTGCTATAGAGTTGAAAAAGACTGTAGAATAGAGACTATTGGTATGTTTTATACAAAAAGGAAAAGTGAGGATGATCTTTTTCTCCTTTTTTGGTATAAAGACTCATGCATTTTCTCAATAAGTCATTATGTGCGCATGCCTAATCATCCTGAAGTCATTACTCATGGCTACTATCTTCTGCAACTGTTGTTATGAAATATGATGGTAACTTATTCGTTCTTTTGATTTGTCACAAATGCAAGAGAGATGGTTTTTGTATCAGAATTCTCACTCACTGGATTACTTCATTATCCAAAAAAGAACCACTGGAAAATTGATGTCTGAAGGCATGTTGGGATTTTTTTTTCTTTTACATCCGACATTTATGCTTTTCATTAATGTTATAAGTTGAATCACTATATTTTGTTTTCAGACCTTAAAGAATTTTTTACATTACGCTGCTCCCTTTTTTTTACGTCCTTTTACGAAACTTTTGGGGCATAAAAAAGATATAAATAGCCCTTCCTCTTTATAGGAATTCTATAGATATAAATATAAAATTAATGTCAAACTTCTTCCTTATTTCACATGGATCATTCAACTTGCCCAACCACCTGTTCCAATCTTAATTGACTTGGGTGTGGGTGTGGGTGTGATTGTAGGTGTCAGTATGATATGCATACCGGATTCAGCTAGTTCACATGGGTTGTATGGACTACAAATATGGCCGACAACAATAGTTTGACTAGGTTTTAAGTTTTCCATTTTGAAGTTTGTACACACACCAAAAATATTATACATATATCAACCGCATATTGACACCTGAGCCATATTCCTGAATCATGAGATCGATGTGACAATGAATCCTACTTATCTAAAAGAAAAGTGATGATGAATCCAACTGCCAAATCCATACATAGACCTCTTCTAGGTCTCATAAACTCAAATACTTGAATCTTCTCCTCTTTTTGGCGGTTGTTTTTAGTTCATGCTTATAGCCTATTAAAGTGACATTAAATATGTACAATACGTCATTCTAAGTATGTAATGTGGGCAGTTACCTAATCAGTTTAAGCTCGGCTTCTTCTTTCCTTTCTCAAGTCATCCTAATATTGACGTTAAACTAATCTTTTTTTTTTTTTGAGAAGGCTATTAAACTAATCTTCCTTACACCTTTTAACAATCATTTTTAATAATACTTGCAGCCAACTCAAATATTGCAGAACCTTCACGAGTACTTTCTTTCCTTATTTTTCGTCAAGCCTGGTCAATCACATCTTAAAACTATGTGCACACGGTATATACTTTTTGATTCTTAAGGGGAAGGTTTTGTGTTTTATTGAATAACTTTCTTCTTTGTGGGATGAAGTGCATGTAGTTAGGCCAAGATAATTGAAACTTGTAAAACTGCTTAAAAGAGGTGTCGGCATTGTGTCTACATAGAAATAATGGATATTCTATCTCATTTTGTGTGAACATACAACAGAATTTCTGAAATGTATTGCATGGAAAAGCAAATGTTATCATCCTACATAAATTATTTGACCAAAAGGCATGCACCTTTAATTTCTTCCTCTCTATTAAACTGAGGTATCAGATGTGCACATCCTGGGGATTGAAACTGCTCTGACTTCTTTCATGCTTTCATCACAAGTTCCACTGTGTTACATGAGTGGGTAACTGCCTATATTTTGTGATTGTTAACTCTCTATGTTTTGTGTCTGAGTTACTGACTTCATTTTTTTTTATGGTACTTGTACAACAGATGTAACATGTTATCAACTTAATCATGGTATATTGTTTATTTCATGCGACCGTACTTAGGATTTCTTTTTAATGATGCAGAAATGACAATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGTGTAAGTTGTGCTCGTTTGTTTACGGGTTATGCTAACTTCTGCAAATGTGTCTATCCAGAAAAGGAAAATACAGCTTTCTTGTGTTTCTGTTTGATATCTTTTATTGCCTAAAATGTGGATTAAATTGTTGGAATAGATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAGGTAAATTTTTATACACTATTATCTTGTTTATAAACACTTACAGAATTCTCCAACTTATCTTTACTATGTTCACATTGTCAACAGATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGGGTTAGTTCTACAGGTAAGAATGTCATTCGAGTTGTTGGCACTCAAACTCTGGAACGTGTACTAGAGTATTATACTGATCACCTATCAATTAATACTTGGATCTTGATTGTCCTTCGTAAATGGGGATAGAAGCATATGGAGAAGAGGAATAGAAAGAAAAATTTGACTGATGCAAGTACCGAGGTTACAAAATTTACAGCTGACCTTAATACTTGTGGTTCATTTTTGCGGATCTATAACAGTAACCATGTAGGGTTGTTTCTTGGTTGTTGTTTTGATCTCTTTTATTTCATTGGAACTTACCATGCACCCAAAGACTTGGTGTCTGTTCTATGAGATGCAACTAAAAAAGAAATTACATTTTAATGAATTATATATATAGCATATAAATTGAATGATTGAAAAAAAATATCAGATCGTATTTCTAAATCTGGTTGCTACCCTGGTGGAAATGTAATAGCACGGTCTACCTTTGTTGTTGCGTTGGTGGAAATTTAATATCAGATGGATGATCAAACAAACATATTGTCTAAGAGGTTGAAGGAAGAGAAAATCTTGAATTTATCCTAGTCCCTGCTTGTTGACTTAGAAGTGGTCTATTAAGAAAGAGGACTTTAACGCACACATGTTTGTGATGTCTTCTTCAACTATGATATGCATGCCTTCATTCTTGTGATTTTGGCGATCTTGTTTCTGCTATATCTATAAGCAGGACACAACATTCTTGACATGCGAGTTTTGGCTCGAGTCTGTTTGTACTTACCCTTAATTTTTGTTCTTAGGAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTCAGGTAACATCTTTCACCCTTGTCAAATCAGCATGGGTTTCATCTGTGCTCCTTCTTGATGATACTATAAAGTTGATTCTTCTTCTGGCATCTTCATTTCTTAAATGAACTTGTGTTGACAGGTTATTCTGAGGAAGACAGTCCTTATTCAACAAAGGGTCAGAAGGGAACATTC</genome_strand>
        <mrna_strand>TCGTCTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGATGAAGTATCCCGTATTTCTGCGGAGTTCAGGCCTGGAGTCGTAACCCTTGATGGACACGCTGATGATTGGGAAAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATACAAAGGGGGGAAAATGACCGTTAAG......................................................................GCTTTACACGATGGGAAAGATGTCTACTTTTTGTTGCAAGTAGATGGAGAATATGTATACAAGAAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGACAATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGT........................................................................................................................................ATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAG....................................................................................ATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGGGTTAGTTCTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTCAN.......................................................................................................................GTTATTCTGAGGAAGACAGTCCTTATTCAACAAAGGGTCAGAAGGGAACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543292" ref_strand="+" ref_description="SGN-E543292 [TUS-65-A13]">
      <seq>catcttcttccatggcagccggttctactgagtcgagtcaactcttgatttatccaaaaccccattactactaacacacacaatcttctatttccacgacaaatggagcaatccctgttactatcaatcttcttattattctcaatcgggatccaattcgtctcttcccatcaagaatccggcaactggcattgcgaaaccgatgaagtatcccgtatttctgcggagttcaggcctggagtcgtaacccttgatggacacgctgatgattgggaaaatattgaaggatttgagttttctctccttcctgctcttgacccagatcatgaccatgaatacaaaggggggaaaatgaccgttaaggctttacacgatgggaaagatgtctactttttgttgcaagtagatggagaatatgtatacaagaaaggaaatgacaataattgcccatctgtagcactgatgtttcaagttggtgagagtgccacatatcatagtatggggtgggtgtaagcaatcacctgatgcatgcaacaaaaaaacttgtcgtgggcacgaagtcgatatcatgcacttctcaattggaaatgctatccctggcagattgtatggtggaaacccagtcgacaacagagatggtaatgggggagacagatttggtcatctagtcgatttatatgcttggagcccacactgtatgaattttgaatggggttagttctacaggaaatgatacatctgcccagaatgactggaggggtgcatggtggcatagcagtttcagtacccattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="49610" stop="43817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49310" g_stop="48948" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48947" i_stop="48878" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48877" g_stop="48810" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="431" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48809" i_stop="45466" i_length="3344">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45465" g_stop="45399" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="498" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45398" i_stop="45263" i_length="136">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45262" g_stop="45108" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="654" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45107" i_stop="45024" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45023" g_stop="44953" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="726" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44952" i_stop="44184" i_length="769">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44183" g_stop="44117" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="793" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E543292" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49310" e_stop="48948"/>
          <exon e_start="48877" e_stop="48810"/>
          <exon e_start="45465" e_stop="45399"/>
          <exon e_start="45262" e_stop="45108"/>
          <exon e_start="45023" e_stop="44953"/>
          <exon e_start="44183" e_stop="44117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCTTCCATGGCAGCCGGTTCTACTGAGTCGAGTCAACTCTTGATTTATCCAAAACCCCATTACTACTAACACACACAATCTTCTATTTCCACGACAAATGGAGCAATCCCTGTTACTATCAATCTTCTTATTATTCTCAATCGGGATCCAATTCGTCTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGATGAAGTATCCCGTATTTCTGCGGAGTTCAGGCCTGGAGTCGTAACCCTTGATGGACACGCTGATGATTGGGAAAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATACAAAGGGGGGAAAATGACCGTTAAGGTATTATTAGATTCTTCTACAATGATTTCCTTGATTTGTTTTCTTGGGTTACTTACTTGATTTTGATTAGGCTTTACACGATGGGAAAGATGTCTACTTTTTGTTGCAAGTAGATGGAGAATATGTATACAAGAAAGGGTGAGTAAATGCTCTCAATAATTACCTATCTTGTGGGATTTTGGGATTTATTTAGTGACCTTGTGCTGGAACTATTCCTGTTTTTAGACTGTTGCTTATTGGAAAATTGATTATTAAATTACATACCTTATTTGGCATTGAGGTAACATCATTGGTGGTGTAGTTTCTCGTTTCTTTCTTTAACATGCTAAATCCTCAAGGCATTTCATGCTTCTTTAGAAATTTGAAGTTACCTTTCTTTTGATGTCTGTGAATCTATGCATTGCTACCCATTGGGTTTGAGAGACTTCCCAATATAGATTTTTTTTTGCTGAAAGACACTTGAAAAACAAATTTGTGTAAGTTATTCTAATGGATTTCTTCTAAATTAAAAATAGCTCTACTATGAAACTCGTTAGCAAAGGGTAATCTCCTTAATTAGAAGTTTAATGATTTTAATATGTCTTGTAGCTTGCTCTATTTTTAGGGAAAAGGAGACGTCTTATGAATTCTTTTTGTTCAACAAATTCCTAAATTGAACTCAATGAAATTGTAAATCAATTAGGAAACAGATAAATGAAATTTGTCAAAGTCAAACTAATCAGGAATAAGAAGAAAACATATTTCCGTCAACACGGCTGTAGAAATGATATTGCATAAACAGGGTGCCTCCCTCCTCCTTTCCCTATTCATGCATCATAAAGATGTCATATGATCGCCCCCTTACTTCCTCTTTCACCTCTATTACATTGTCCCACACTGGTTGAGGGAATAGTTTCTTGTCTCCTTATATAGTCTTGGGTAATCCTAGGTGCTGTCTCTGAAAAAAATGAAGGATCTGTCAGGTTTACATTATTTTCTACCTAAATTTGTGAAAAATCGTGATTTTGAGGGTTATTCAATCTTGACATGTAAGGTTTTGATGGCAAGGATGTGCACTATTCCCTAGTTGTGGTTTTTGAGGGTTATTCAATATTGACATGTAAGGTTTTGATTGCAAGGATGTGCACTATTTCCTAGTTGTGGTTGGGAAGAAGGGAAGCCAGATTTGGGAGTTAGAGATGAACTTCTGAAATAATAAAAAAAGAAAGTCACACTGGATTGAGCTTTAGTGGGGAAGATTTTCTTAGGTCTAGTTAAGTTTGAAATGAACTAAAACAAATGGAAAAAGACTAGTGTATTAGCATGAGGCAATGTTTAGGATAAAGACGAGAACAAGATGAGTGAGCCAAAAAGTTGACAGTGCTTGACATTTGCCCAAATAAATTTAAGGTAGCATTCAAGTGGTATTAGCGAGTGAATTTCCTGAAAATTTTGGTCCAAAGTGGAAGGTTGTAAGATGAGGTGATGCATGGAAAATGTGCTTTATTTACTTTTAACGGTTGGGGTGGGGGAAAACATTATAATTTCTGTAACATTGTCGAAGAGCCTTCCATCACGGTCAGTCAACAATTACTGCAAGCATGTGCCCTAGAAGATCATTTCTATCTGCACTGGTATACTTTCATCACATAATCATTGTCTCAAATAATGTGAGATATTGCTATAGAGTTGAAAAAGACTGTAGAATAGAGACTATTGGTATGTTTTATACAAAAAGGAAAAGTGAGGATGATCTTTTTCTCCTTTTTTGGTATAAAGACTCATGCATTTTCTCAATAAGTCATTATGTGCGCATGCCTAATCATCCTGAAGTCATTACTCATGGCTACTATCTTCTGCAACTGTTGTTATGAAATATGATGGTAACTTATTCGTTCTTTTGATTTGTCACAAATGCAAGAGAGATGGTTTTTGTATCAGAATTCTCACTCACTGGATTACTTCATTATCCAAAAAAGAACCACTGGAAAATTGATGTCTGAAGGCATGTTGGGATTTTTTTTTCTTTTACATCCGACATTTATGCTTTTCATTAATGTTATAAGTTGAATCACTATATTTTGTTTTCAGACCTTAAAGAATTTTTTACATTACGCTGCTCCCTTTTTTTTACGTCCTTTTACGAAACTTTTGGGGCATAAAAAAGATATAAATAGCCCTTCCTCTTTATAGGAATTCTATAGATATAAATATAAAATTAATGTCAAACTTCTTCCTTATTTCACATGGATCATTCAACTTGCCCAACCACCTGTTCCAATCTTAATTGACTTGGGTGTGGGTGTGGGTGTGATTGTAGGTGTCAGTATGATATGCATACCGGATTCAGCTAGTTCACATGGGTTGTATGGACTACAAATATGGCCGACAACAATAGTTTGACTAGGTTTTAAGTTTTCCATTTTGAAGTTTGTACACACACCAAAAATATTATACATATATCAACCGCATATTGACACCTGAGCCATATTCCTGAATCATGAGATCGATGTGACAATGAATCCTACTTATCTAAAAGAAAAGTGATGATGAATCCAACTGCCAAATCCATACATAGACCTCTTCTAGGTCTCATAAACTCAAATACTTGAATCTTCTCCTCTTTTTGGCGGTTGTTTTTAGTTCATGCTTATAGCCTATTAAAGTGACATTAAATATGTACAATACGTCATTCTAAGTATGTAATGTGGGCAGTTACCTAATCAGTTTAAGCTCGGCTTCTTCTTTCCTTTCTCAAGTCATCCTAATATTGACGTTAAACTAATCTTTTTTTTTTTTTGAGAAGGCTATTAAACTAATCTTCCTTACACCTTTTAACAATCATTTTTAATAATACTTGCAGCCAACTCAAATATTGCAGAACCTTCACGAGTACTTTCTTTCCTTATTTTTCGTCAAGCCTGGTCAATCACATCTTAAAACTATGTGCACACGGTATATACTTTTTGATTCTTAAGGGGAAGGTTTTGTGTTTTATTGAATAACTTTCTTCTTTGTGGGATGAAGTGCATGTAGTTAGGCCAAGATAATTGAAACTTGTAAAACTGCTTAAAAGAGGTGTCGGCATTGTGTCTACATAGAAATAATGGATATTCTATCTCATTTTGTGTGAACATACAACAGAATTTCTGAAATGTATTGCATGGAAAAGCAAATGTTATCATCCTACATAAATTATTTGACCAAAAGGCATGCACCTTTAATTTCTTCCTCTCTATTAAACTGAGGTATCAGATGTGCACATCCTGGGGATTGAAACTGCTCTGACTTCTTTCATGCTTTCATCACAAGTTCCACTGTGTTACATGAGTGGGTAACTGCCTATATTTTGTGATTGTTAACTCTCTATGTTTTGTGTCTGAGTTACTGACTTCATTTTTTTTTATGGTACTTGTACAACAGATGTAACATGTTATCAACTTAATCATGGTATATTGTTTATTTCATGCGACCGTACTTAGGATTTCTTTTTAATGATGCAGAAATGACAATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGTGTAAGTTGTGCTCGTTTGTTTACGGGTTATGCTAACTTCTGCAAATGTGTCTATCCAGAAAAGGAAAATACAGCTTTCTTGTGTTTCTGTTTGATATCTTTTATTGCCTAAAATGTGGATTAAATTGTTGGAATAGAT-GGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAGGTAAATTTTTATACACTATTATCTTGTTTATAAACACTTACAGAATTCTCCAACTTATCTTTACTATGTTCACATTGTCAACAGATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAA-TTTGGATGGGGTTAGTTCTACAGGTAAGAATGTCATTCGAGTTGTTGGCACTCAAACTCTGGAACGTGTACTAGAGTATTATACTGATCACCTATCAATTAATACTTGGATCTTGATTGTCCTTCGTAAATGGGGATAGAAGCATATGGAGAAGAGGAATAGAAAGAAAAATTTGACTGATGCAAGTACCGAGGTTACAAAATTTACAGCTGACCTTAATACTTGTGGTTCATTTTTGCGGATCTATAACAGTAACCATGTAGGGTTGTTTCTTGGTTGTTGTTTTGATCTCTTTTATTTCATTGGAACTTACCATGCACCCAAAGACTTGGTGTCTGTTCTATGAGATGCAACTAAAAAAGAAATTACATTTTAATGAATTATATATATAGCATATAAATTGAATGATTGAAAAAAAATATCAGATCGTATTTCTAAATCTGGTTGCTACCCTGGTGGAAATGTAATAGCACGGTCTACCTTTGTTGTTGCGTTGGTGGAAATTTAATATCAGATGGATGATCAAACAAACATATTGTCTAAGAGGTTGAAGGAAGAGAAAATCTTGAATTTATCCTAGTCCCTGCTTGTTGACTTAGAAGTGGTCTATTAAGAAAGAGGACTTTAACGCACACATGTTTGTGATGTCTTCTTCAACTATGATATGCATGCCTTCATTCTTGTGATTTTGGCGATCTTGTTTCTGCTATATCTATAAGCAGGACACAACATTCTTGACATGCGAGTTTTGGCTCGAGTCTGTTTGTACTTACCCTTAATTTTTGTTCTTAGGAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTC</genome_strand>
        <mrna_strand>CATCTTCTTCCATGGCAGCCGGTTCTACTGAGTCGAGTCAACTCTTGATTTATCCAAAACCCCATTACTACTAACACACACAATCTTCTATTTCCACGACAAATGGAGCAATCCCTGTTACTATCAATCTTCTTATTATTCTCAATCGGGATCCAATTCGTCTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGATGAAGTATCCCGTATTTCTGCGGAGTTCAGGCCTGGAGTCGTAACCCTTGATGGACACGCTGATGATTGGGAAAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATACAAAGGGGGGAAAATGACCGTTAAG......................................................................GCTTTACACGATGGGAAAGATGTCTACTTTTTGTTGCAAGTAGATGGAGAATATGTATACAAGAAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGACAATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGT........................................................................................................................................ATGGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAG....................................................................................ATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTTGAATGGGGTTAGTTCTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436757" ref_strand="+" ref_description="SGN-E436757 [cSTA-1-A21]">
      <seq>ttccaccaaaatggagcaacccctgttcctaacactcttcttattattctcaattgggatccaatttgtttcttcccatcaagaatccggcaactggcattgcgaaaccgacgaagaatcccgtatttctgcggagttcatgcctggagtcgtaacccttgatggacacgcggatgactgggacaatattgaaggatttgagttttctctccttcctgctcttgacccagatcatgaccatgaatataaagggggaaagatgaccgttaaggctttgcacgatggcaaagatgtctactttttgttgaaagtagatggagaatatctgtacaagaaaggaaatgacaagaattgcccatctgtagcactgatgtttcaagttggtgagagtgccacatatcatagtatgggtgggtgtaagcaatcacctgatgcatgcaacaaaaaaacttgtcgtgggcacgaagtcgatatcatgcacttctcaattggaaatgctatccctggcagattgtatggtggaaacccagtcgacaacagagatggtaatgggggagacagatttggtcatctagtcgatttatatgcttggagcccacactgtatgaatttggatggggttagttctacaggaaatgatacatctgcccagaatgactggangggtgcatggtggcatagcagtttcagtacccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="49519" stop="43818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49219" g_stop="48948" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48947" i_stop="48878" i_length="70">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48877" g_stop="48810" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="339" r_length="68" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48809" i_stop="45466" i_length="3344">
            <donor d_prob="0.931" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45465" g_stop="45399" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="406" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45398" i_stop="45263" i_length="136">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45262" g_stop="45108" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="561" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45107" i_stop="45024" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45023" g_stop="44953" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="632" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44952" i_stop="44184" i_length="769">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44183" g_stop="44118" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="698" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E436757" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49219" e_stop="48948"/>
          <exon e_start="48877" e_stop="48810"/>
          <exon e_start="45465" e_stop="45399"/>
          <exon e_start="45262" e_stop="45108"/>
          <exon e_start="45023" e_stop="44953"/>
          <exon e_start="44183" e_stop="44118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACGACAAATGGAGCAATCCCTGTTACTATCAATCTTCTTATTATTCTCAATCGGGATCCAATTCGTCTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGATGAAGTATCCCGTATTTCTGCGGAGTTCAGGCCTGGAGTCGTAACCCTTGATGGACACGCTGATGATTGGGAAAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATACAAAGGGGGGAAAATGACCGTTAAGGTATTATTAGATTCTTCTACAATGATTTCCTTGATTTGTTTTCTTGGGTTACTTACTTGATTTTGATTAGGCTTTACACGATGGGAAAGATGTCTACTTTTTGTTGCAAGTAGATGGAGAATATGTATACAAGAAAGGGTGAGTAAATGCTCTCAATAATTACCTATCTTGTGGGATTTTGGGATTTATTTAGTGACCTTGTGCTGGAACTATTCCTGTTTTTAGACTGTTGCTTATTGGAAAATTGATTATTAAATTACATACCTTATTTGGCATTGAGGTAACATCATTGGTGGTGTAGTTTCTCGTTTCTTTCTTTAACATGCTAAATCCTCAAGGCATTTCATGCTTCTTTAGAAATTTGAAGTTACCTTTCTTTTGATGTCTGTGAATCTATGCATTGCTACCCATTGGGTTTGAGAGACTTCCCAATATAGATTTTTTTTTGCTGAAAGACACTTGAAAAACAAATTTGTGTAAGTTATTCTAATGGATTTCTTCTAAATTAAAAATAGCTCTACTATGAAACTCGTTAGCAAAGGGTAATCTCCTTAATTAGAAGTTTAATGATTTTAATATGTCTTGTAGCTTGCTCTATTTTTAGGGAAAAGGAGACGTCTTATGAATTCTTTTTGTTCAACAAATTCCTAAATTGAACTCAATGAAATTGTAAATCAATTAGGAAACAGATAAATGAAATTTGTCAAAGTCAAACTAATCAGGAATAAGAAGAAAACATATTTCCGTCAACACGGCTGTAGAAATGATATTGCATAAACAGGGTGCCTCCCTCCTCCTTTCCCTATTCATGCATCATAAAGATGTCATATGATCGCCCCCTTACTTCCTCTTTCACCTCTATTACATTGTCCCACACTGGTTGAGGGAATAGTTTCTTGTCTCCTTATATAGTCTTGGGTAATCCTAGGTGCTGTCTCTGAAAAAAATGAAGGATCTGTCAGGTTTACATTATTTTCTACCTAAATTTGTGAAAAATCGTGATTTTGAGGGTTATTCAATCTTGACATGTAAGGTTTTGATGGCAAGGATGTGCACTATTCCCTAGTTGTGGTTTTTGAGGGTTATTCAATATTGACATGTAAGGTTTTGATTGCAAGGATGTGCACTATTTCCTAGTTGTGGTTGGGAAGAAGGGAAGCCAGATTTGGGAGTTAGAGATGAACTTCTGAAATAATAAAAAAAGAAAGTCACACTGGATTGAGCTTTAGTGGGGAAGATTTTCTTAGGTCTAGTTAAGTTTGAAATGAACTAAAACAAATGGAAAAAGACTAGTGTATTAGCATGAGGCAATGTTTAGGATAAAGACGAGAACAAGATGAGTGAGCCAAAAAGTTGACAGTGCTTGACATTTGCCCAAATAAATTTAAGGTAGCATTCAAGTGGTATTAGCGAGTGAATTTCCTGAAAATTTTGGTCCAAAGTGGAAGGTTGTAAGATGAGGTGATGCATGGAAAATGTGCTTTATTTACTTTTAACGGTTGGGGTGGGGGAAAACATTATAATTTCTGTAACATTGTCGAAGAGCCTTCCATCACGGTCAGTCAACAATTACTGCAAGCATGTGCCCTAGAAGATCATTTCTATCTGCACTGGTATACTTTCATCACATAATCATTGTCTCAAATAATGTGAGATATTGCTATAGAGTTGAAAAAGACTGTAGAATAGAGACTATTGGTATGTTTTATACAAAAAGGAAAAGTGAGGATGATCTTTTTCTCCTTTTTTGGTATAAAGACTCATGCATTTTCTCAATAAGTCATTATGTGCGCATGCCTAATCATCCTGAAGTCATTACTCATGGCTACTATCTTCTGCAACTGTTGTTATGAAATATGATGGTAACTTATTCGTTCTTTTGATTTGTCACAAATGCAAGAGAGATGGTTTTTGTATCAGAATTCTCACTCACTGGATTACTTCATTATCCAAAAAAGAACCACTGGAAAATTGATGTCTGAAGGCATGTTGGGATTTTTTTTTCTTTTACATCCGACATTTATGCTTTTCATTAATGTTATAAGTTGAATCACTATATTTTGTTTTCAGACCTTAAAGAATTTTTTACATTACGCTGCTCCCTTTTTTTTACGTCCTTTTACGAAACTTTTGGGGCATAAAAAAGATATAAATAGCCCTTCCTCTTTATAGGAATTCTATAGATATAAATATAAAATTAATGTCAAACTTCTTCCTTATTTCACATGGATCATTCAACTTGCCCAACCACCTGTTCCAATCTTAATTGACTTGGGTGTGGGTGTGGGTGTGATTGTAGGTGTCAGTATGATATGCATACCGGATTCAGCTAGTTCACATGGGTTGTATGGACTACAAATATGGCCGACAACAATAGTTTGACTAGGTTTTAAGTTTTCCATTTTGAAGTTTGTACACACACCAAAAATATTATACATATATCAACCGCATATTGACACCTGAGCCATATTCCTGAATCATGAGATCGATGTGACAATGAATCCTACTTATCTAAAAGAAAAGTGATGATGAATCCAACTGCCAAATCCATACATAGACCTCTTCTAGGTCTCATAAACTCAAATACTTGAATCTTCTCCTCTTTTTGGCGGTTGTTTTTAGTTCATGCTTATAGCCTATTAAAGTGACATTAAATATGTACAATACGTCATTCTAAGTATGTAATGTGGGCAGTTACCTAATCAGTTTAAGCTCGGCTTCTTCTTTCCTTTCTCAAGTCATCCTAATATTGACGTTAAACTAATCTTTTTTTTTTTTTGAGAAGGCTATTAAACTAATCTTCCTTACACCTTTTAACAATCATTTTTAATAATACTTGCAGCCAACTCAAATATTGCAGAACCTTCACGAGTACTTTCTTTCCTTATTTTTCGTCAAGCCTGGTCAATCACATCTTAAAACTATGTGCACACGGTATATACTTTTTGATTCTTAAGGGGAAGGTTTTGTGTTTTATTGAATAACTTTCTTCTTTGTGGGATGAAGTGCATGTAGTTAGGCCAAGATAATTGAAACTTGTAAAACTGCTTAAAAGAGGTGTCGGCATTGTGTCTACATAGAAATAATGGATATTCTATCTCATTTTGTGTGAACATACAACAGAATTTCTGAAATGTATTGCATGGAAAAGCAAATGTTATCATCCTACATAAATTATTTGACCAAAAGGCATGCACCTTTAATTTCTTCCTCTCTATTAAACTGAGGTATCAGATGTGCACATCCTGGGGATTGAAACTGCTCTGACTTCTTTCATGCTTTCATCACAAGTTCCACTGTGTTACATGAGTGGGTAACTGCCTATATTTTGTGATTGTTAACTCTCTATGTTTTGTGTCTGAGTTACTGACTTCATTTTTTTTTATGGTACTTGTACAACAGATGTAACATGTTATCAACTTAATCATGGTATATTGTTTATTTCATGCGACCGTACTTAGGATTTCTTTTTAATGATGCAGAAATGACAATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGTGTAAGTTGTGCTCGTTTGTTTACGGGTTATGCTAACTTCTGCAAATGTGTCTATCCAGAAAAGGAAAATACAGCTTTCTTGTGTTTCTGTTTGATATCTTTTATTGCCTAAAATGTGGATTAAATTGTTGGAATAGATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAGGTAAATTTTTATACACTATTATCTTGTTTATAAACACTTACAGAATTCTCCAACTTATCTTTACTATGTTCACATTGTCAACAGATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGGGTTAGTTCTACAGGTAAGAATGTCATTCGAGTTGTTGGCACTCAAACTCTGGAACGTGTACTAGAGTATTATACTGATCACCTATCAATTAATACTTGGATCTTGATTGTCCTTCGTAAATGGGGATAGAAGCATATGGAGAAGAGGAATAGAAAGAAAAATTTGACTGATGCAAGTACCGAGGTTACAAAATTTACAGCTGACCTTAATACTTGTGGTTCATTTTTGCGGATCTATAACAGTAACCATGTAGGGTTGTTTCTTGGTTGTTGTTTTGATCTCTTTTATTTCATTGGAACTTACCATGCACCCAAAGACTTGGTGTCTGTTCTATGAGATGCAACTAAAAAAGAAATTACATTTTAATGAATTATATATATAGCATATAAATTGAATGATTGAAAAAAAATATCAGATCGTATTTCTAAATCTGGTTGCTACCCTGGTGGAAATGTAATAGCACGGTCTACCTTTGTTGTTGCGTTGGTGGAAATTTAATATCAGATGGATGATCAAACAAACATATTGTCTAAGAGGTTGAAGGAAGAGAAAATCTTGAATTTATCCTAGTCCCTGCTTGTTGACTTAGAAGTGGTCTATTAAGAAAGAGGACTTTAACGCACACATGTTTGTGATGTCTTCTTCAACTATGATATGCATGCCTTCATTCTTGTGATTTTGGCGATCTTGTTTCTGCTATATCTATAAGCAGGACACAACATTCTTGACATGCGAGTTTTGGCTCGAGTCTGTTTGTACTTACCCTTAATTTTTGTTCTTAGGAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATT</genome_strand>
        <mrna_strand>TTCCACCA-AAATGGAGCAACCCCTGTTCCTAACACTCTTCTTATTATTCTCAATTGGGATCCAATTTGTTTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGACGAAGAATCCCGTATTTCTGCGGAGTTCATGCCTGGAGTCGTAACCCTTGATGGACACGCGGATGACTGGGACAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATATAAAGGGGGAAAGATGACCGTTAAG......................................................................GCTTTGCACGATGGCAAAGATGTCTACTTTTTGTTGAAAGTAGATGGAGAATATCTGTACAAGAAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGACAAGAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGT........................................................................................................................................ATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAG....................................................................................ATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGGGTTAGTTCTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGATACATCTGCCCAGAATGACTGGANGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445575" ref_strand="+" ref_description="SGN-E445575 [cSTA-4-A21]">
      <seq>ttccaccaaaatggagcaacccctgttcctaacactcttcttattattctcaattgggatccaatttgtttcttcccatcaagaatccggcaactggcattgcgaaaccgacgaagaatcccgtatttctgcggagttcatgcctggagtcgtaacccttgatggacacgcggatgactgggacaatattgaaggatttgagttttctctccttcctgctcttgacccagatcatgaccatgaatataaagggggaaagatgaccgttaaggctttgcacgatggcaaagatgtctactttttgttgaaagtagatggagaatatctgtacaagaaaggaaatgacaagaattgcccatctgtagcactgatgtttcaagttggtgagagtgccacatatcatagtatgggtgggtgtaagcaatcacctgatgcatgcaacaaaaaaacttgtcgtgggcacgaagtcgatatcatgcacttctcaattggaaatgctatccctggcagattgtatggtggaaacccagtcgacaacagagatggtaatgggggagacagatttggtcatctagtcgatttatatgcttggagcccacactgtatgaatttggatggggttagttctacaggaaatgatacatctgcccagaatgactggangggtgcatggtggcatagcagtttcagtacccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="49519" stop="43818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49219" g_stop="48948" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48947" i_stop="48878" i_length="70">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48877" g_stop="48810" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="339" r_length="68" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48809" i_stop="45466" i_length="3344">
            <donor d_prob="0.931" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45465" g_stop="45399" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="406" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45398" i_stop="45263" i_length="136">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45262" g_stop="45108" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="561" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45107" i_stop="45024" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45023" g_stop="44953" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="632" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44952" i_stop="44184" i_length="769">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44183" g_stop="44118" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="698" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E445575" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49219" e_stop="48948"/>
          <exon e_start="48877" e_stop="48810"/>
          <exon e_start="45465" e_stop="45399"/>
          <exon e_start="45262" e_stop="45108"/>
          <exon e_start="45023" e_stop="44953"/>
          <exon e_start="44183" e_stop="44118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACGACAAATGGAGCAATCCCTGTTACTATCAATCTTCTTATTATTCTCAATCGGGATCCAATTCGTCTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGATGAAGTATCCCGTATTTCTGCGGAGTTCAGGCCTGGAGTCGTAACCCTTGATGGACACGCTGATGATTGGGAAAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATACAAAGGGGGGAAAATGACCGTTAAGGTATTATTAGATTCTTCTACAATGATTTCCTTGATTTGTTTTCTTGGGTTACTTACTTGATTTTGATTAGGCTTTACACGATGGGAAAGATGTCTACTTTTTGTTGCAAGTAGATGGAGAATATGTATACAAGAAAGGGTGAGTAAATGCTCTCAATAATTACCTATCTTGTGGGATTTTGGGATTTATTTAGTGACCTTGTGCTGGAACTATTCCTGTTTTTAGACTGTTGCTTATTGGAAAATTGATTATTAAATTACATACCTTATTTGGCATTGAGGTAACATCATTGGTGGTGTAGTTTCTCGTTTCTTTCTTTAACATGCTAAATCCTCAAGGCATTTCATGCTTCTTTAGAAATTTGAAGTTACCTTTCTTTTGATGTCTGTGAATCTATGCATTGCTACCCATTGGGTTTGAGAGACTTCCCAATATAGATTTTTTTTTGCTGAAAGACACTTGAAAAACAAATTTGTGTAAGTTATTCTAATGGATTTCTTCTAAATTAAAAATAGCTCTACTATGAAACTCGTTAGCAAAGGGTAATCTCCTTAATTAGAAGTTTAATGATTTTAATATGTCTTGTAGCTTGCTCTATTTTTAGGGAAAAGGAGACGTCTTATGAATTCTTTTTGTTCAACAAATTCCTAAATTGAACTCAATGAAATTGTAAATCAATTAGGAAACAGATAAATGAAATTTGTCAAAGTCAAACTAATCAGGAATAAGAAGAAAACATATTTCCGTCAACACGGCTGTAGAAATGATATTGCATAAACAGGGTGCCTCCCTCCTCCTTTCCCTATTCATGCATCATAAAGATGTCATATGATCGCCCCCTTACTTCCTCTTTCACCTCTATTACATTGTCCCACACTGGTTGAGGGAATAGTTTCTTGTCTCCTTATATAGTCTTGGGTAATCCTAGGTGCTGTCTCTGAAAAAAATGAAGGATCTGTCAGGTTTACATTATTTTCTACCTAAATTTGTGAAAAATCGTGATTTTGAGGGTTATTCAATCTTGACATGTAAGGTTTTGATGGCAAGGATGTGCACTATTCCCTAGTTGTGGTTTTTGAGGGTTATTCAATATTGACATGTAAGGTTTTGATTGCAAGGATGTGCACTATTTCCTAGTTGTGGTTGGGAAGAAGGGAAGCCAGATTTGGGAGTTAGAGATGAACTTCTGAAATAATAAAAAAAGAAAGTCACACTGGATTGAGCTTTAGTGGGGAAGATTTTCTTAGGTCTAGTTAAGTTTGAAATGAACTAAAACAAATGGAAAAAGACTAGTGTATTAGCATGAGGCAATGTTTAGGATAAAGACGAGAACAAGATGAGTGAGCCAAAAAGTTGACAGTGCTTGACATTTGCCCAAATAAATTTAAGGTAGCATTCAAGTGGTATTAGCGAGTGAATTTCCTGAAAATTTTGGTCCAAAGTGGAAGGTTGTAAGATGAGGTGATGCATGGAAAATGTGCTTTATTTACTTTTAACGGTTGGGGTGGGGGAAAACATTATAATTTCTGTAACATTGTCGAAGAGCCTTCCATCACGGTCAGTCAACAATTACTGCAAGCATGTGCCCTAGAAGATCATTTCTATCTGCACTGGTATACTTTCATCACATAATCATTGTCTCAAATAATGTGAGATATTGCTATAGAGTTGAAAAAGACTGTAGAATAGAGACTATTGGTATGTTTTATACAAAAAGGAAAAGTGAGGATGATCTTTTTCTCCTTTTTTGGTATAAAGACTCATGCATTTTCTCAATAAGTCATTATGTGCGCATGCCTAATCATCCTGAAGTCATTACTCATGGCTACTATCTTCTGCAACTGTTGTTATGAAATATGATGGTAACTTATTCGTTCTTTTGATTTGTCACAAATGCAAGAGAGATGGTTTTTGTATCAGAATTCTCACTCACTGGATTACTTCATTATCCAAAAAAGAACCACTGGAAAATTGATGTCTGAAGGCATGTTGGGATTTTTTTTTCTTTTACATCCGACATTTATGCTTTTCATTAATGTTATAAGTTGAATCACTATATTTTGTTTTCAGACCTTAAAGAATTTTTTACATTACGCTGCTCCCTTTTTTTTACGTCCTTTTACGAAACTTTTGGGGCATAAAAAAGATATAAATAGCCCTTCCTCTTTATAGGAATTCTATAGATATAAATATAAAATTAATGTCAAACTTCTTCCTTATTTCACATGGATCATTCAACTTGCCCAACCACCTGTTCCAATCTTAATTGACTTGGGTGTGGGTGTGGGTGTGATTGTAGGTGTCAGTATGATATGCATACCGGATTCAGCTAGTTCACATGGGTTGTATGGACTACAAATATGGCCGACAACAATAGTTTGACTAGGTTTTAAGTTTTCCATTTTGAAGTTTGTACACACACCAAAAATATTATACATATATCAACCGCATATTGACACCTGAGCCATATTCCTGAATCATGAGATCGATGTGACAATGAATCCTACTTATCTAAAAGAAAAGTGATGATGAATCCAACTGCCAAATCCATACATAGACCTCTTCTAGGTCTCATAAACTCAAATACTTGAATCTTCTCCTCTTTTTGGCGGTTGTTTTTAGTTCATGCTTATAGCCTATTAAAGTGACATTAAATATGTACAATACGTCATTCTAAGTATGTAATGTGGGCAGTTACCTAATCAGTTTAAGCTCGGCTTCTTCTTTCCTTTCTCAAGTCATCCTAATATTGACGTTAAACTAATCTTTTTTTTTTTTTGAGAAGGCTATTAAACTAATCTTCCTTACACCTTTTAACAATCATTTTTAATAATACTTGCAGCCAACTCAAATATTGCAGAACCTTCACGAGTACTTTCTTTCCTTATTTTTCGTCAAGCCTGGTCAATCACATCTTAAAACTATGTGCACACGGTATATACTTTTTGATTCTTAAGGGGAAGGTTTTGTGTTTTATTGAATAACTTTCTTCTTTGTGGGATGAAGTGCATGTAGTTAGGCCAAGATAATTGAAACTTGTAAAACTGCTTAAAAGAGGTGTCGGCATTGTGTCTACATAGAAATAATGGATATTCTATCTCATTTTGTGTGAACATACAACAGAATTTCTGAAATGTATTGCATGGAAAAGCAAATGTTATCATCCTACATAAATTATTTGACCAAAAGGCATGCACCTTTAATTTCTTCCTCTCTATTAAACTGAGGTATCAGATGTGCACATCCTGGGGATTGAAACTGCTCTGACTTCTTTCATGCTTTCATCACAAGTTCCACTGTGTTACATGAGTGGGTAACTGCCTATATTTTGTGATTGTTAACTCTCTATGTTTTGTGTCTGAGTTACTGACTTCATTTTTTTTTATGGTACTTGTACAACAGATGTAACATGTTATCAACTTAATCATGGTATATTGTTTATTTCATGCGACCGTACTTAGGATTTCTTTTTAATGATGCAGAAATGACAATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGTGTAAGTTGTGCTCGTTTGTTTACGGGTTATGCTAACTTCTGCAAATGTGTCTATCCAGAAAAGGAAAATACAGCTTTCTTGTGTTTCTGTTTGATATCTTTTATTGCCTAAAATGTGGATTAAATTGTTGGAATAGATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAGGTAAATTTTTATACACTATTATCTTGTTTATAAACACTTACAGAATTCTCCAACTTATCTTTACTATGTTCACATTGTCAACAGATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGGGTTAGTTCTACAGGTAAGAATGTCATTCGAGTTGTTGGCACTCAAACTCTGGAACGTGTACTAGAGTATTATACTGATCACCTATCAATTAATACTTGGATCTTGATTGTCCTTCGTAAATGGGGATAGAAGCATATGGAGAAGAGGAATAGAAAGAAAAATTTGACTGATGCAAGTACCGAGGTTACAAAATTTACAGCTGACCTTAATACTTGTGGTTCATTTTTGCGGATCTATAACAGTAACCATGTAGGGTTGTTTCTTGGTTGTTGTTTTGATCTCTTTTATTTCATTGGAACTTACCATGCACCCAAAGACTTGGTGTCTGTTCTATGAGATGCAACTAAAAAAGAAATTACATTTTAATGAATTATATATATAGCATATAAATTGAATGATTGAAAAAAAATATCAGATCGTATTTCTAAATCTGGTTGCTACCCTGGTGGAAATGTAATAGCACGGTCTACCTTTGTTGTTGCGTTGGTGGAAATTTAATATCAGATGGATGATCAAACAAACATATTGTCTAAGAGGTTGAAGGAAGAGAAAATCTTGAATTTATCCTAGTCCCTGCTTGTTGACTTAGAAGTGGTCTATTAAGAAAGAGGACTTTAACGCACACATGTTTGTGATGTCTTCTTCAACTATGATATGCATGCCTTCATTCTTGTGATTTTGGCGATCTTGTTTCTGCTATATCTATAAGCAGGACACAACATTCTTGACATGCGAGTTTTGGCTCGAGTCTGTTTGTACTTACCCTTAATTTTTGTTCTTAGGAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATT</genome_strand>
        <mrna_strand>TTCCACCA-AAATGGAGCAACCCCTGTTCCTAACACTCTTCTTATTATTCTCAATTGGGATCCAATTTGTTTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGACGAAGAATCCCGTATTTCTGCGGAGTTCATGCCTGGAGTCGTAACCCTTGATGGACACGCGGATGACTGGGACAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATATAAAGGGGGAAAGATGACCGTTAAG......................................................................GCTTTGCACGATGGCAAAGATGTCTACTTTTTGTTGAAAGTAGATGGAGAATATCTGTACAAGAAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGACAAGAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGT........................................................................................................................................ATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAG....................................................................................ATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGGGTTAGTTCTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGATACATCTGCCCAGAATGACTGGANGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421301" ref_strand="+" ref_description="SGN-E421301 [STM-32-L11]">
      <seq>atttgtcggaatagatgggtgggtgtaagcaatcacctgatgcatgcaacaaaaaaacttgtcgtgggcacgaagtcgatatcatgcacttctcaattggaaatgctatccctggcagattgtatggtggaaacccagtcgacaacagagatggtaatgggggagacagatttggtcatctagtcgatttatatgcttggagcccacactgtatgaatttggatggggtttgttctacaggtaagaatgccattcgagttattggcactcaaactctggaacgtgtactagagtattatactgatcacttatcaattaatacttggatcttgattgtcctttgtaaatggggatagaagcaaatggaaaaaaggaatagaaagaaaaatttgactgatgcaagtaacaaaatttacagctgaccttaattcatgtggttcatttttgcggatctataacagtaaccatttaggttgtttcttggctgttgttttgttctcttttatttcattgacacttaccatgcacctaaagacttggtgtctgttctgtgagatgcaactaaaaaagaaattatattttaatgaattacatatatagcatataatttgaacgatagaaaaaaatatcagatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="45576" stop="44247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45276" g_stop="45108" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45107" i_stop="45024" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45023" g_stop="44547" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="636" r_length="467" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E421301" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45276" e_stop="45108"/>
          <exon e_start="45023" e_stop="44547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTGGAATAGATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAGGTAAATTTTTATACACTATTATCTTGTTTATAAACACTTACAGAATTCTCCAACTTATCTTTACTATGTTCACATTGTCAACAGATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGGGTTAGTTCTACAGGTAAGAATGTCATTCGAGTTGTTGGCACTCAAACTCTGGAACGTGTACTAGAGTATTATACTGATCACCTATCAATTAATACTTGGATCTTGATTGTCCTTCGTAAATGGGGATAGAAGCATATGGAGAAGAGGAATAGAAAGAAAAATTTGACTGATGCAAGTACCGAGGTTACAAAATTTACAGCTGACCTTAATACTTGTGGTTCATTTTTGCGGATCTATAACAGTAACCATGTAGGGTTGTTTCTTGGTTGTTGTTTTGATCTCTTTTATTTCATTGGAACTTACCATGCACCCAAAGACTTGGTGTCTGTTCTATGAGATGCAACTAAAAAAGAAATTACATTTTAATGAATTATATATATAGCATATAAATTGAATGATTGAAAAAAAATATCAGATCG</genome_strand>
        <mrna_strand>ATTTGTCGGAATAGATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAG....................................................................................ATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGGGTTTGTTCTACAGGTAAGAATGCCATTCGAGTTATTGGCACTCAAACTCTGGAACGTGTACTAGAGTATTATACTGATCACTTATCAATTAATACTTGGATCTTGATTGTCCTTTGTAAATGGGGATAGAAGCAAATGGAAAAAAGGAATAGAAAGAAAAATTTGACTGATGCAAGT----A----ACAAAATTTACAGCTGACCTTAATTCATGTGGTTCATTTTTGCGGATCTATAACAGTAACCATTTA-GGTTGTTTCTTGGCTGTTGTTTTGTTCTCTTTTATTTCATTGACACTTACCATGCACCTAAAGACTTGGTGTCTGTTCTGTGAGATGCAACTAAAAAAGAAATTATATTTTAATGAATTACATATATAGCATATAATTTGAACGATAG-AAAAAAATATCAGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270589" ref_strand="+" ref_description="SGN-E270589 [cLEN-1-K11]">
      <seq>aaaaacttgtcgtgggcacgaagtcgatatcatgcacttctcaattggaaatgctatccctggcagattgtatggtggaaacccagtcgacaacagagatggtaatgggggagacagatttggtcatctaatcgatttatatgcttggagcccacactgtatgaatttggatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="45524" stop="44666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45224" g_stop="45108" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45107" i_stop="45024" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45023" g_stop="44966" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="175" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E270589" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45224" e_stop="45108"/>
          <exon e_start="45023" e_stop="44966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAGGTAAATTTTTATACACTATTATCTTGTTTATAAACACTTACAGAATTCTCCAACTTATCTTTACTATGTTCACATTGTCAACAGATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGG</genome_strand>
        <mrna_strand>AAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAG....................................................................................ATTTGGTCATCTAATCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408113" ref_strand="+" ref_description="SGN-E408113 [PPI-10-G11]">
      <seq>cttgatttatccgaaaccccactaacacacacacaaaatcttcaatttccaccaaaatggagcaacccctgttcctaacactcttcttattattctcaattgggatccaatttgtctcttcccatcaagaatcaggcaactggcattgcgaaaccgacgaagaatcccgtatttctgcggagttcatgcctggagtcgtaacccttgatggacacgcggatgactgggacaatattgaaggatttgagttttctctacttcctgctcttgacccagatcatgaccatgaatataaagggggaaagatgaccgttaaggctttgcacgatggcaaagatgtctactttttgttgaaagtagatggagaatatgtatacaagaaaggaaatgacaagaattgcccatctgtagcactgatgtttcaagttggtgagagtgccacatatcatagtatgggtgggtgtaagcaatcacctgatgcatgcaacaaaaaaacttgtcgtgggcacgaagtcgatatcatgcacttctcaattggaaatgctatccctggtagattgtatggtggaaacccagtcgacaacagagatggtaatgggggagacagattttgtcatctagtcgattatatgcttggagcccacactgtatgaatttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="49544" stop="44669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49267" g_stop="48948" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48947" i_stop="48878" i_length="70">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48877" g_stop="48810" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="385" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48809" i_stop="45466" i_length="3344">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45465" g_stop="45399" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="452" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45398" i_stop="45263" i_length="136">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45262" g_stop="45108" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="607" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45107" i_stop="45024" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45023" g_stop="44969" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="661" r_length="54" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E408113" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49267" e_stop="48948"/>
          <exon e_start="48877" e_stop="48810"/>
          <exon e_start="45465" e_stop="45399"/>
          <exon e_start="45262" e_stop="45108"/>
          <exon e_start="45023" e_stop="44969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTTATCCAAAACCCCATTACTACTAACACACACAATCTTCTATTTCCACGACAAATGGAGCAATCCCTGTTACTATCAATCTTCTTATTATTCTCAATCGGGATCCAATTCGTCTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGATGAAGTATCCCGTATTTCTGCGGAGTTCAGGCCTGGAGTCGTAACCCTTGATGGACACGCTGATGATTGGGAAAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATACAAAGGGGGGAAAATGACCGTTAAGGTATTATTAGATTCTTCTACAATGATTTCCTTGATTTGTTTTCTTGGGTTACTTACTTGATTTTGATTAGGCTTTACACGATGGGAAAGATGTCTACTTTTTGTTGCAAGTAGATGGAGAATATGTATACAAGAAAGGGTGAGTAAATGCTCTCAATAATTACCTATCTTGTGGGATTTTGGGATTTATTTAGTGACCTTGTGCTGGAACTATTCCTGTTTTTAGACTGTTGCTTATTGGAAAATTGATTATTAAATTACATACCTTATTTGGCATTGAGGTAACATCATTGGTGGTGTAGTTTCTCGTTTCTTTCTTTAACATGCTAAATCCTCAAGGCATTTCATGCTTCTTTAGAAATTTGAAGTTACCTTTCTTTTGATGTCTGTGAATCTATGCATTGCTACCCATTGGGTTTGAGAGACTTCCCAATATAGATTTTTTTTTGCTGAAAGACACTTGAAAAACAAATTTGTGTAAGTTATTCTAATGGATTTCTTCTAAATTAAAAATAGCTCTACTATGAAACTCGTTAGCAAAGGGTAATCTCCTTAATTAGAAGTTTAATGATTTTAATATGTCTTGTAGCTTGCTCTATTTTTAGGGAAAAGGAGACGTCTTATGAATTCTTTTTGTTCAACAAATTCCTAAATTGAACTCAATGAAATTGTAAATCAATTAGGAAACAGATAAATGAAATTTGTCAAAGTCAAACTAATCAGGAATAAGAAGAAAACATATTTCCGTCAACACGGCTGTAGAAATGATATTGCATAAACAGGGTGCCTCCCTCCTCCTTTCCCTATTCATGCATCATAAAGATGTCATATGATCGCCCCCTTACTTCCTCTTTCACCTCTATTACATTGTCCCACACTGGTTGAGGGAATAGTTTCTTGTCTCCTTATATAGTCTTGGGTAATCCTAGGTGCTGTCTCTGAAAAAAATGAAGGATCTGTCAGGTTTACATTATTTTCTACCTAAATTTGTGAAAAATCGTGATTTTGAGGGTTATTCAATCTTGACATGTAAGGTTTTGATGGCAAGGATGTGCACTATTCCCTAGTTGTGGTTTTTGAGGGTTATTCAATATTGACATGTAAGGTTTTGATTGCAAGGATGTGCACTATTTCCTAGTTGTGGTTGGGAAGAAGGGAAGCCAGATTTGGGAGTTAGAGATGAACTTCTGAAATAATAAAAAAAGAAAGTCACACTGGATTGAGCTTTAGTGGGGAAGATTTTCTTAGGTCTAGTTAAGTTTGAAATGAACTAAAACAAATGGAAAAAGACTAGTGTATTAGCATGAGGCAATGTTTAGGATAAAGACGAGAACAAGATGAGTGAGCCAAAAAGTTGACAGTGCTTGACATTTGCCCAAATAAATTTAAGGTAGCATTCAAGTGGTATTAGCGAGTGAATTTCCTGAAAATTTTGGTCCAAAGTGGAAGGTTGTAAGATGAGGTGATGCATGGAAAATGTGCTTTATTTACTTTTAACGGTTGGGGTGGGGGAAAACATTATAATTTCTGTAACATTGTCGAAGAGCCTTCCATCACGGTCAGTCAACAATTACTGCAAGCATGTGCCCTAGAAGATCATTTCTATCTGCACTGGTATACTTTCATCACATAATCATTGTCTCAAATAATGTGAGATATTGCTATAGAGTTGAAAAAGACTGTAGAATAGAGACTATTGGTATGTTTTATACAAAAAGGAAAAGTGAGGATGATCTTTTTCTCCTTTTTTGGTATAAAGACTCATGCATTTTCTCAATAAGTCATTATGTGCGCATGCCTAATCATCCTGAAGTCATTACTCATGGCTACTATCTTCTGCAACTGTTGTTATGAAATATGATGGTAACTTATTCGTTCTTTTGATTTGTCACAAATGCAAGAGAGATGGTTTTTGTATCAGAATTCTCACTCACTGGATTACTTCATTATCCAAAAAAGAACCACTGGAAAATTGATGTCTGAAGGCATGTTGGGATTTTTTTTTCTTTTACATCCGACATTTATGCTTTTCATTAATGTTATAAGTTGAATCACTATATTTTGTTTTCAGACCTTAAAGAATTTTTTACATTACGCTGCTCCCTTTTTTTTACGTCCTTTTACGAAACTTTTGGGGCATAAAAAAGATATAAATAGCCCTTCCTCTTTATAGGAATTCTATAGATATAAATATAAAATTAATGTCAAACTTCTTCCTTATTTCACATGGATCATTCAACTTGCCCAACCACCTGTTCCAATCTTAATTGACTTGGGTGTGGGTGTGGGTGTGATTGTAGGTGTCAGTATGATATGCATACCGGATTCAGCTAGTTCACATGGGTTGTATGGACTACAAATATGGCCGACAACAATAGTTTGACTAGGTTTTAAGTTTTCCATTTTGAAGTTTGTACACACACCAAAAATATTATACATATATCAACCGCATATTGACACCTGAGCCATATTCCTGAATCATGAGATCGATGTGACAATGAATCCTACTTATCTAAAAGAAAAGTGATGATGAATCCAACTGCCAAATCCATACATAGACCTCTTCTAGGTCTCATAAACTCAAATACTTGAATCTTCTCCTCTTTTTGGCGGTTGTTTTTAGTTCATGCTTATAGCCTATTAAAGTGACATTAAATATGTACAATACGTCATTCTAAGTATGTAATGTGGGCAGTTACCTAATCAGTTTAAGCTCGGCTTCTTCTTTCCTTTCTCAAGTCATCCTAATATTGACGTTAAACTAATCTTTTTTTTTTTTTGAGAAGGCTATTAAACTAATCTTCCTTACACCTTTTAACAATCATTTTTAATAATACTTGCAGCCAACTCAAATATTGCAGAACCTTCACGAGTACTTTCTTTCCTTATTTTTCGTCAAGCCTGGTCAATCACATCTTAAAACTATGTGCACACGGTATATACTTTTTGATTCTTAAGGGGAAGGTTTTGTGTTTTATTGAATAACTTTCTTCTTTGTGGGATGAAGTGCATGTAGTTAGGCCAAGATAATTGAAACTTGTAAAACTGCTTAAAAGAGGTGTCGGCATTGTGTCTACATAGAAATAATGGATATTCTATCTCATTTTGTGTGAACATACAACAGAATTTCTGAAATGTATTGCATGGAAAAGCAAATGTTATCATCCTACATAAATTATTTGACCAAAAGGCATGCACCTTTAATTTCTTCCTCTCTATTAAACTGAGGTATCAGATGTGCACATCCTGGGGATTGAAACTGCTCTGACTTCTTTCATGCTTTCATCACAAGTTCCACTGTGTTACATGAGTGGGTAACTGCCTATATTTTGTGATTGTTAACTCTCTATGTTTTGTGTCTGAGTTACTGACTTCATTTTTTTTTATGGTACTTGTACAACAGATGTAACATGTTATCAACTTAATCATGGTATATTGTTTATTTCATGCGACCGTACTTAGGATTTCTTTTTAATGATGCAGAAATGACAATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGTGTAAGTTGTGCTCGTTTGTTTACGGGTTATGCTAACTTCTGCAAATGTGTCTATCCAGAAAAGGAAAATACAGCTTTCTTGTGTTTCTGTTTGATATCTTTTATTGCCTAAAATGTGGATTAAATTGTTGGAATAGATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAGGTAAATTTTTATACACTATTATCTTGTTTATAAACACTTACAGAATTCTCCAACTTATCTTTACTATGTTCACATTGTCAACAGATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGAT</genome_strand>
        <mrna_strand>CTTGATTTATCCGAAACCCCACTA--ACACACACACAAAATCTTCAATTTCCACCA-AAATGGAGCAACCCCTGTTCCTAACACTCTTCTTATTATTCTCAATTGGGATCCAATTTGTCTCTTCCCATCAAGAATCAGGCAACTGGCATTGCGAAACCGACGAAGAATCCCGTATTTCTGCGGAGTTCATGCCTGGAGTCGTAACCCTTGATGGACACGCGGATGACTGGGACAATATTGAAGGATTTGAGTTTTCTCTACTTCCTGCTCTTGACCCAGATCATGACCATGAATATAAAGGGGGAAAGATGACCGTTAAG......................................................................GCTTTGCACGATGGCAAAGATGTCTACTTTTTGTTGAAAGTAGATGGAGAATATGTATACAAGAAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGACAAGAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGT........................................................................................................................................ATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGTAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAG....................................................................................ATTTTGTCATCTAGTCGA-TTATATGCTTGGAGCCCACACTGTATGAATTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256785" ref_strand="+" ref_description="SGN-E256785 [cLEG-40-O19]">
      <seq>tcgtctcttcccatcaagaatccggcaactggcattgcgaaaccgatgaagtatcccgtatttctgcggagttcaagcctggagtcgtaacccttgatggacacgctgatgattgggaaaatattgaaggatttgagttttctctccttcctgctcttgacccagatcatgaccatgaatacaaaggggggaaaatgaccgttaaggctttacacgatgggaaagatgtctactttttgttgcaagtagatggagaatatgtatacaagaaaggaaatgacaataattgcccatctgtagcactgatgtttcaagttggtgagagtgccacatatcatagtatgggtgggtgtaagcaatcacctgatgcatgcaacaaaaaaacttgtcgtgggcacgaagtcgatatcatgcacttctcaattggaaatgctatccctggcagattgtatggtggaaacccagtcgacaacagagatggtaatgggggagacagatttggtcatctagtcgatttatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="49453" stop="44697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49153" g_stop="48948" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48947" i_stop="48878" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48877" g_stop="48810" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="274" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48809" i_stop="45466" i_length="3344">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45465" g_stop="45399" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="341" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45398" i_stop="45263" i_length="136">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45262" g_stop="45108" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="496" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45107" i_stop="45024" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.746" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45023" g_stop="44997" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="523" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E256785" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49153" e_stop="48948"/>
          <exon e_start="48877" e_stop="48810"/>
          <exon e_start="45465" e_stop="45399"/>
          <exon e_start="45262" e_stop="45108"/>
          <exon e_start="45023" e_stop="44997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGATGAAGTATCCCGTATTTCTGCGGAGTTCAGGCCTGGAGTCGTAACCCTTGATGGACACGCTGATGATTGGGAAAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATACAAAGGGGGGAAAATGACCGTTAAGGTATTATTAGATTCTTCTACAATGATTTCCTTGATTTGTTTTCTTGGGTTACTTACTTGATTTTGATTAGGCTTTACACGATGGGAAAGATGTCTACTTTTTGTTGCAAGTAGATGGAGAATATGTATACAAGAAAGGGTGAGTAAATGCTCTCAATAATTACCTATCTTGTGGGATTTTGGGATTTATTTAGTGACCTTGTGCTGGAACTATTCCTGTTTTTAGACTGTTGCTTATTGGAAAATTGATTATTAAATTACATACCTTATTTGGCATTGAGGTAACATCATTGGTGGTGTAGTTTCTCGTTTCTTTCTTTAACATGCTAAATCCTCAAGGCATTTCATGCTTCTTTAGAAATTTGAAGTTACCTTTCTTTTGATGTCTGTGAATCTATGCATTGCTACCCATTGGGTTTGAGAGACTTCCCAATATAGATTTTTTTTTGCTGAAAGACACTTGAAAAACAAATTTGTGTAAGTTATTCTAATGGATTTCTTCTAAATTAAAAATAGCTCTACTATGAAACTCGTTAGCAAAGGGTAATCTCCTTAATTAGAAGTTTAATGATTTTAATATGTCTTGTAGCTTGCTCTATTTTTAGGGAAAAGGAGACGTCTTATGAATTCTTTTTGTTCAACAAATTCCTAAATTGAACTCAATGAAATTGTAAATCAATTAGGAAACAGATAAATGAAATTTGTCAAAGTCAAACTAATCAGGAATAAGAAGAAAACATATTTCCGTCAACACGGCTGTAGAAATGATATTGCATAAACAGGGTGCCTCCCTCCTCCTTTCCCTATTCATGCATCATAAAGATGTCATATGATCGCCCCCTTACTTCCTCTTTCACCTCTATTACATTGTCCCACACTGGTTGAGGGAATAGTTTCTTGTCTCCTTATATAGTCTTGGGTAATCCTAGGTGCTGTCTCTGAAAAAAATGAAGGATCTGTCAGGTTTACATTATTTTCTACCTAAATTTGTGAAAAATCGTGATTTTGAGGGTTATTCAATCTTGACATGTAAGGTTTTGATGGCAAGGATGTGCACTATTCCCTAGTTGTGGTTTTTGAGGGTTATTCAATATTGACATGTAAGGTTTTGATTGCAAGGATGTGCACTATTTCCTAGTTGTGGTTGGGAAGAAGGGAAGCCAGATTTGGGAGTTAGAGATGAACTTCTGAAATAATAAAAAAAGAAAGTCACACTGGATTGAGCTTTAGTGGGGAAGATTTTCTTAGGTCTAGTTAAGTTTGAAATGAACTAAAACAAATGGAAAAAGACTAGTGTATTAGCATGAGGCAATGTTTAGGATAAAGACGAGAACAAGATGAGTGAGCCAAAAAGTTGACAGTGCTTGACATTTGCCCAAATAAATTTAAGGTAGCATTCAAGTGGTATTAGCGAGTGAATTTCCTGAAAATTTTGGTCCAAAGTGGAAGGTTGTAAGATGAGGTGATGCATGGAAAATGTGCTTTATTTACTTTTAACGGTTGGGGTGGGGGAAAACATTATAATTTCTGTAACATTGTCGAAGAGCCTTCCATCACGGTCAGTCAACAATTACTGCAAGCATGTGCCCTAGAAGATCATTTCTATCTGCACTGGTATACTTTCATCACATAATCATTGTCTCAAATAATGTGAGATATTGCTATAGAGTTGAAAAAGACTGTAGAATAGAGACTATTGGTATGTTTTATACAAAAAGGAAAAGTGAGGATGATCTTTTTCTCCTTTTTTGGTATAAAGACTCATGCATTTTCTCAATAAGTCATTATGTGCGCATGCCTAATCATCCTGAAGTCATTACTCATGGCTACTATCTTCTGCAACTGTTGTTATGAAATATGATGGTAACTTATTCGTTCTTTTGATTTGTCACAAATGCAAGAGAGATGGTTTTTGTATCAGAATTCTCACTCACTGGATTACTTCATTATCCAAAAAAGAACCACTGGAAAATTGATGTCTGAAGGCATGTTGGGATTTTTTTTTCTTTTACATCCGACATTTATGCTTTTCATTAATGTTATAAGTTGAATCACTATATTTTGTTTTCAGACCTTAAAGAATTTTTTACATTACGCTGCTCCCTTTTTTTTACGTCCTTTTACGAAACTTTTGGGGCATAAAAAAGATATAAATAGCCCTTCCTCTTTATAGGAATTCTATAGATATAAATATAAAATTAATGTCAAACTTCTTCCTTATTTCACATGGATCATTCAACTTGCCCAACCACCTGTTCCAATCTTAATTGACTTGGGTGTGGGTGTGGGTGTGATTGTAGGTGTCAGTATGATATGCATACCGGATTCAGCTAGTTCACATGGGTTGTATGGACTACAAATATGGCCGACAACAATAGTTTGACTAGGTTTTAAGTTTTCCATTTTGAAGTTTGTACACACACCAAAAATATTATACATATATCAACCGCATATTGACACCTGAGCCATATTCCTGAATCATGAGATCGATGTGACAATGAATCCTACTTATCTAAAAGAAAAGTGATGATGAATCCAACTGCCAAATCCATACATAGACCTCTTCTAGGTCTCATAAACTCAAATACTTGAATCTTCTCCTCTTTTTGGCGGTTGTTTTTAGTTCATGCTTATAGCCTATTAAAGTGACATTAAATATGTACAATACGTCATTCTAAGTATGTAATGTGGGCAGTTACCTAATCAGTTTAAGCTCGGCTTCTTCTTTCCTTTCTCAAGTCATCCTAATATTGACGTTAAACTAATCTTTTTTTTTTTTTGAGAAGGCTATTAAACTAATCTTCCTTACACCTTTTAACAATCATTTTTAATAATACTTGCAGCCAACTCAAATATTGCAGAACCTTCACGAGTACTTTCTTTCCTTATTTTTCGTCAAGCCTGGTCAATCACATCTTAAAACTATGTGCACACGGTATATACTTTTTGATTCTTAAGGGGAAGGTTTTGTGTTTTATTGAATAACTTTCTTCTTTGTGGGATGAAGTGCATGTAGTTAGGCCAAGATAATTGAAACTTGTAAAACTGCTTAAAAGAGGTGTCGGCATTGTGTCTACATAGAAATAATGGATATTCTATCTCATTTTGTGTGAACATACAACAGAATTTCTGAAATGTATTGCATGGAAAAGCAAATGTTATCATCCTACATAAATTATTTGACCAAAAGGCATGCACCTTTAATTTCTTCCTCTCTATTAAACTGAGGTATCAGATGTGCACATCCTGGGGATTGAAACTGCTCTGACTTCTTTCATGCTTTCATCACAAGTTCCACTGTGTTACATGAGTGGGTAACTGCCTATATTTTGTGATTGTTAACTCTCTATGTTTTGTGTCTGAGTTACTGACTTCATTTTTTTTTATGGTACTTGTACAACAGATGTAACATGTTATCAACTTAATCATGGTATATTGTTTATTTCATGCGACCGTACTTAGGATTTCTTTTTAATGATGCAGAAATGACAATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGTGTAAGTTGTGCTCGTTTGTTTACGGGTTATGCTAACTTCTGCAAATGTGTCTATCCAGAAAAGGAAAATACAGCTTTCTTGTGTTTCTGTTTGATATCTTTTATTGCCTAAAATGTGGATTAAATTGTTGGAATAGATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAGGTAAATTTTTATACACTATTATCTTGTTTATAAACACTTACAGAATTCTCCAACTTATCTTTACTATGTTCACATTGTCAACAGATTTGGTCATCTAGTCGATTTATATGC</genome_strand>
        <mrna_strand>TCGTCTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGATGAAGTATCCCGTATTTCTGCGGAGTTCAAGCCTGGAGTCGTAACCCTTGATGGACACGCTGATGATTGGGAAAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATACAAAGGGGGGAAAATGACCGTTAAG......................................................................GCTTTACACGATGGGAAAGATGTCTACTTTTTGTTGCAAGTAGATGGAGAATATGTATACAAGAAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGACAATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGT........................................................................................................................................ATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAG....................................................................................ATTTGGTCATCTAGTCGATTTATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611774" ref_strand="+" ref_description="SGN-E611774 [61529]">
      <seq>atcttcttccatggcagccggttctactcagtcgagtcaactcttgatttatccaaaaccccactaacacacacacacaaaatcttcaatttccaccaaaatggagcaacccctgttcctaacactcttcttattattctcaattgggatccaatttgtttcttcccatcaagaatccggcaactggcattgcgaaaccgacgaagaatcccgtatttctgcggagttcatgcctggagtcgtaacccttgatggacacgcggatgactgggacaatattgaaggatttgagttttctctccttcctgctcttgacccagatcatgaccatgaatataaagggggaaagatgaccgttaaggctttgcacgatggcaaagatgtctactttttgttgaaagtagatggagaatatgtgtacaagaaaggaaatgacaagaattgcccatctgtagcactgatgtttcaagttggtgagagtgccacatatcatagtatgggtgggtgtaagcaatcacctgatgcatgcaacaaaaaaacttgtcgtgggcacgaagtcgatatcatgcacttctcaaattggaaaatgctatccctggcagattgttatggtgggaaaccccaagctcgaacaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="49609" stop="44830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49309" g_stop="48948" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48947" i_stop="48878" i_length="70">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48877" g_stop="48810" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="429" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48809" i_stop="45466" i_length="3344">
            <donor d_prob="0.931" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45465" g_stop="45399" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="496" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45398" i_stop="45263" i_length="136">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45262" g_stop="45154" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="607" r_length="111" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E611774" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49309" e_stop="48948"/>
          <exon e_start="48877" e_stop="48810"/>
          <exon e_start="45465" e_stop="45399"/>
          <exon e_start="45262" e_stop="45154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTTCCATGGCAGCCGGTTCTACTGAGTCGAGTCAACTCTTGATTTATCCAAAACCCCATTACTACTAACACACACAATCTTCTATTTCCACGACAAATGGAGCAATCCCTGTTACTATCAATCTTCTTATTATTCTCAATCGGGATCCAATTCGTCTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGATGAAGTATCCCGTATTTCTGCGGAGTTCAGGCCTGGAGTCGTAACCCTTGATGGACACGCTGATGATTGGGAAAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATACAAAGGGGGGAAAATGACCGTTAAGGTATTATTAGATTCTTCTACAATGATTTCCTTGATTTGTTTTCTTGGGTTACTTACTTGATTTTGATTAGGCTTTACACGATGGGAAAGATGTCTACTTTTTGTTGCAAGTAGATGGAGAATATGTATACAAGAAAGGGTGAGTAAATGCTCTCAATAATTACCTATCTTGTGGGATTTTGGGATTTATTTAGTGACCTTGTGCTGGAACTATTCCTGTTTTTAGACTGTTGCTTATTGGAAAATTGATTATTAAATTACATACCTTATTTGGCATTGAGGTAACATCATTGGTGGTGTAGTTTCTCGTTTCTTTCTTTAACATGCTAAATCCTCAAGGCATTTCATGCTTCTTTAGAAATTTGAAGTTACCTTTCTTTTGATGTCTGTGAATCTATGCATTGCTACCCATTGGGTTTGAGAGACTTCCCAATATAGATTTTTTTTTGCTGAAAGACACTTGAAAAACAAATTTGTGTAAGTTATTCTAATGGATTTCTTCTAAATTAAAAATAGCTCTACTATGAAACTCGTTAGCAAAGGGTAATCTCCTTAATTAGAAGTTTAATGATTTTAATATGTCTTGTAGCTTGCTCTATTTTTAGGGAAAAGGAGACGTCTTATGAATTCTTTTTGTTCAACAAATTCCTAAATTGAACTCAATGAAATTGTAAATCAATTAGGAAACAGATAAATGAAATTTGTCAAAGTCAAACTAATCAGGAATAAGAAGAAAACATATTTCCGTCAACACGGCTGTAGAAATGATATTGCATAAACAGGGTGCCTCCCTCCTCCTTTCCCTATTCATGCATCATAAAGATGTCATATGATCGCCCCCTTACTTCCTCTTTCACCTCTATTACATTGTCCCACACTGGTTGAGGGAATAGTTTCTTGTCTCCTTATATAGTCTTGGGTAATCCTAGGTGCTGTCTCTGAAAAAAATGAAGGATCTGTCAGGTTTACATTATTTTCTACCTAAATTTGTGAAAAATCGTGATTTTGAGGGTTATTCAATCTTGACATGTAAGGTTTTGATGGCAAGGATGTGCACTATTCCCTAGTTGTGGTTTTTGAGGGTTATTCAATATTGACATGTAAGGTTTTGATTGCAAGGATGTGCACTATTTCCTAGTTGTGGTTGGGAAGAAGGGAAGCCAGATTTGGGAGTTAGAGATGAACTTCTGAAATAATAAAAAAAGAAAGTCACACTGGATTGAGCTTTAGTGGGGAAGATTTTCTTAGGTCTAGTTAAGTTTGAAATGAACTAAAACAAATGGAAAAAGACTAGTGTATTAGCATGAGGCAATGTTTAGGATAAAGACGAGAACAAGATGAGTGAGCCAAAAAGTTGACAGTGCTTGACATTTGCCCAAATAAATTTAAGGTAGCATTCAAGTGGTATTAGCGAGTGAATTTCCTGAAAATTTTGGTCCAAAGTGGAAGGTTGTAAGATGAGGTGATGCATGGAAAATGTGCTTTATTTACTTTTAACGGTTGGGGTGGGGGAAAACATTATAATTTCTGTAACATTGTCGAAGAGCCTTCCATCACGGTCAGTCAACAATTACTGCAAGCATGTGCCCTAGAAGATCATTTCTATCTGCACTGGTATACTTTCATCACATAATCATTGTCTCAAATAATGTGAGATATTGCTATAGAGTTGAAAAAGACTGTAGAATAGAGACTATTGGTATGTTTTATACAAAAAGGAAAAGTGAGGATGATCTTTTTCTCCTTTTTTGGTATAAAGACTCATGCATTTTCTCAATAAGTCATTATGTGCGCATGCCTAATCATCCTGAAGTCATTACTCATGGCTACTATCTTCTGCAACTGTTGTTATGAAATATGATGGTAACTTATTCGTTCTTTTGATTTGTCACAAATGCAAGAGAGATGGTTTTTGTATCAGAATTCTCACTCACTGGATTACTTCATTATCCAAAAAAGAACCACTGGAAAATTGATGTCTGAAGGCATGTTGGGATTTTTTTTTCTTTTACATCCGACATTTATGCTTTTCATTAATGTTATAAGTTGAATCACTATATTTTGTTTTCAGACCTTAAAGAATTTTTTACATTACGCTGCTCCCTTTTTTTTACGTCCTTTTACGAAACTTTTGGGGCATAAAAAAGATATAAATAGCCCTTCCTCTTTATAGGAATTCTATAGATATAAATATAAAATTAATGTCAAACTTCTTCCTTATTTCACATGGATCATTCAACTTGCCCAACCACCTGTTCCAATCTTAATTGACTTGGGTGTGGGTGTGGGTGTGATTGTAGGTGTCAGTATGATATGCATACCGGATTCAGCTAGTTCACATGGGTTGTATGGACTACAAATATGGCCGACAACAATAGTTTGACTAGGTTTTAAGTTTTCCATTTTGAAGTTTGTACACACACCAAAAATATTATACATATATCAACCGCATATTGACACCTGAGCCATATTCCTGAATCATGAGATCGATGTGACAATGAATCCTACTTATCTAAAAGAAAAGTGATGATGAATCCAACTGCCAAATCCATACATAGACCTCTTCTAGGTCTCATAAACTCAAATACTTGAATCTTCTCCTCTTTTTGGCGGTTGTTTTTAGTTCATGCTTATAGCCTATTAAAGTGACATTAAATATGTACAATACGTCATTCTAAGTATGTAATGTGGGCAGTTACCTAATCAGTTTAAGCTCGGCTTCTTCTTTCCTTTCTCAAGTCATCCTAATATTGACGTTAAACTAATCTTTTTTTTTTTTTGAGAAGGCTATTAAACTAATCTTCCTTACACCTTTTAACAATCATTTTTAATAATACTTGCAGCCAACTCAAATATTGCAGAACCTTCACGAGTACTTTCTTTCCTTATTTTTCGTCAAGCCTGGTCAATCACATCTTAAAACTATGTGCACACGGTATATACTTTTTGATTCTTAAGGGGAAGGTTTTGTGTTTTATTGAATAACTTTCTTCTTTGTGGGATGAAGTGCATGTAGTTAGGCCAAGATAATTGAAACTTGTAAAACTGCTTAAAAGAGGTGTCGGCATTGTGTCTACATAGAAATAATGGATATTCTATCTCATTTTGTGTGAACATACAACAGAATTTCTGAAATGTATTGCATGGAAAAGCAAATGTTATCATCCTACATAAATTATTTGACCAAAAGGCATGCACCTTTAATTTCTTCCTCTCTATTAAACTGAGGTATCAGATGTGCACATCCTGGGGATTGAAACTGCTCTGACTTCTTTCATGCTTTCATCACAAGTTCCACTGTGTTACATGAGTGGGTAACTGCCTATATTTTGTGATTGTTAACTCTCTATGTTTTGTGTCTGAGTTACTGACTTCATTTTTTTTTATGGTACTTGTACAACAGATGTAACATGTTATCAACTTAATCATGGTATATTGTTTATTTCATGCGACCGTACTTAGGATTTCTTTTTAATGATGCAGAAATGACAATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGTGTAAGTTGTGCTCGTTTGTTTACGGGTTATGCTAACTTCTGCAAATGTGTCTATCCAGAAAAGGAAAATACAGCTTTCTTGTGTTTCTGTTTGATATCTTTTATTGCCTAAAATGTGGATTAAATTGTTGGAATAGATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTC-AATTGG-AAATGCTATCCCTGGCAGATTGT</genome_strand>
        <mrna_strand>ATCTTCTTCCATGGCAGCCGGTTCTACTCAGTCGAGTCAACTCTTGATTTATCCAAAACCCCACTAACACACACACACAAAATCTTCAATTTCCACCA-AAATGGAGCAACCCCTGTTCCTAACACTCTTCTTATTATTCTCAATTGGGATCCAATTTGTTTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGACGAAGAATCCCGTATTTCTGCGGAGTTCATGCCTGGAGTCGTAACCCTTGATGGACACGCGGATGACTGGGACAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATATAAAGGGGGAAAGATGACCGTTAAG......................................................................GCTTTGCACGATGGCAAAGATGTCTACTTTTTGTTGAAAGTAGATGGAGAATATGTGTACAAGAAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGACAAGAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGT........................................................................................................................................ATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAAATTGGAAAATGCTATCCCTGGCAGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472323" ref_strand="+" ref_description="SGN-E472323 [cSTB-28-G8]">
      <seq>ctgagtcgagtcaactcttgatttatccgaaaccccactaacacacacacaaaatcttcaatttccaccaaaatggagcaacccctgttcctaacactcttcttattattctcaattgggatccaatttgtctcttcccatcaagaatcaggcaactggcattgcgaaaccgacgaagaatcccgtatttctgcggagttcatgcctggagtcgtaacccttgatggacacgcggatgactgggacaatattgaaggatttgagttttctctacttcctgctcttgacccagatcatgaccatgaatataaagggggaaagatgaccgttaaggctttgcacgatggcaaagatgtctactttttgttgaaagtagatggagaatatgtatacaagaaaggaaatgacaagaattgcccatctgtagcactgatgtttcaagttggtgagagtgccacatatcatagtatgggtgggtgtaagcaatcacctgatgcatgcaacaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="49583" stop="44918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49283" g_stop="48948" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48947" i_stop="48878" i_length="70">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48877" g_stop="48810" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="401" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48809" i_stop="45466" i_length="3344">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45465" g_stop="45399" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="468" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45398" i_stop="45263" i_length="136">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45262" g_stop="45218" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="513" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E472323" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49283" e_stop="48948"/>
          <exon e_start="48877" e_stop="48810"/>
          <exon e_start="45465" e_stop="45399"/>
          <exon e_start="45262" e_stop="45218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTCGAGTCAACTCTTGATTTATCCAAAACCCCATTACTACTAACACACACAATCTTCTATTTCCACGACAAATGGAGCAATCCCTGTTACTATCAATCTTCTTATTATTCTCAATCGGGATCCAATTCGTCTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGATGAAGTATCCCGTATTTCTGCGGAGTTCAGGCCTGGAGTCGTAACCCTTGATGGACACGCTGATGATTGGGAAAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATACAAAGGGGGGAAAATGACCGTTAAGGTATTATTAGATTCTTCTACAATGATTTCCTTGATTTGTTTTCTTGGGTTACTTACTTGATTTTGATTAGGCTTTACACGATGGGAAAGATGTCTACTTTTTGTTGCAAGTAGATGGAGAATATGTATACAAGAAAGGGTGAGTAAATGCTCTCAATAATTACCTATCTTGTGGGATTTTGGGATTTATTTAGTGACCTTGTGCTGGAACTATTCCTGTTTTTAGACTGTTGCTTATTGGAAAATTGATTATTAAATTACATACCTTATTTGGCATTGAGGTAACATCATTGGTGGTGTAGTTTCTCGTTTCTTTCTTTAACATGCTAAATCCTCAAGGCATTTCATGCTTCTTTAGAAATTTGAAGTTACCTTTCTTTTGATGTCTGTGAATCTATGCATTGCTACCCATTGGGTTTGAGAGACTTCCCAATATAGATTTTTTTTTGCTGAAAGACACTTGAAAAACAAATTTGTGTAAGTTATTCTAATGGATTTCTTCTAAATTAAAAATAGCTCTACTATGAAACTCGTTAGCAAAGGGTAATCTCCTTAATTAGAAGTTTAATGATTTTAATATGTCTTGTAGCTTGCTCTATTTTTAGGGAAAAGGAGACGTCTTATGAATTCTTTTTGTTCAACAAATTCCTAAATTGAACTCAATGAAATTGTAAATCAATTAGGAAACAGATAAATGAAATTTGTCAAAGTCAAACTAATCAGGAATAAGAAGAAAACATATTTCCGTCAACACGGCTGTAGAAATGATATTGCATAAACAGGGTGCCTCCCTCCTCCTTTCCCTATTCATGCATCATAAAGATGTCATATGATCGCCCCCTTACTTCCTCTTTCACCTCTATTACATTGTCCCACACTGGTTGAGGGAATAGTTTCTTGTCTCCTTATATAGTCTTGGGTAATCCTAGGTGCTGTCTCTGAAAAAAATGAAGGATCTGTCAGGTTTACATTATTTTCTACCTAAATTTGTGAAAAATCGTGATTTTGAGGGTTATTCAATCTTGACATGTAAGGTTTTGATGGCAAGGATGTGCACTATTCCCTAGTTGTGGTTTTTGAGGGTTATTCAATATTGACATGTAAGGTTTTGATTGCAAGGATGTGCACTATTTCCTAGTTGTGGTTGGGAAGAAGGGAAGCCAGATTTGGGAGTTAGAGATGAACTTCTGAAATAATAAAAAAAGAAAGTCACACTGGATTGAGCTTTAGTGGGGAAGATTTTCTTAGGTCTAGTTAAGTTTGAAATGAACTAAAACAAATGGAAAAAGACTAGTGTATTAGCATGAGGCAATGTTTAGGATAAAGACGAGAACAAGATGAGTGAGCCAAAAAGTTGACAGTGCTTGACATTTGCCCAAATAAATTTAAGGTAGCATTCAAGTGGTATTAGCGAGTGAATTTCCTGAAAATTTTGGTCCAAAGTGGAAGGTTGTAAGATGAGGTGATGCATGGAAAATGTGCTTTATTTACTTTTAACGGTTGGGGTGGGGGAAAACATTATAATTTCTGTAACATTGTCGAAGAGCCTTCCATCACGGTCAGTCAACAATTACTGCAAGCATGTGCCCTAGAAGATCATTTCTATCTGCACTGGTATACTTTCATCACATAATCATTGTCTCAAATAATGTGAGATATTGCTATAGAGTTGAAAAAGACTGTAGAATAGAGACTATTGGTATGTTTTATACAAAAAGGAAAAGTGAGGATGATCTTTTTCTCCTTTTTTGGTATAAAGACTCATGCATTTTCTCAATAAGTCATTATGTGCGCATGCCTAATCATCCTGAAGTCATTACTCATGGCTACTATCTTCTGCAACTGTTGTTATGAAATATGATGGTAACTTATTCGTTCTTTTGATTTGTCACAAATGCAAGAGAGATGGTTTTTGTATCAGAATTCTCACTCACTGGATTACTTCATTATCCAAAAAAGAACCACTGGAAAATTGATGTCTGAAGGCATGTTGGGATTTTTTTTTCTTTTACATCCGACATTTATGCTTTTCATTAATGTTATAAGTTGAATCACTATATTTTGTTTTCAGACCTTAAAGAATTTTTTACATTACGCTGCTCCCTTTTTTTTACGTCCTTTTACGAAACTTTTGGGGCATAAAAAAGATATAAATAGCCCTTCCTCTTTATAGGAATTCTATAGATATAAATATAAAATTAATGTCAAACTTCTTCCTTATTTCACATGGATCATTCAACTTGCCCAACCACCTGTTCCAATCTTAATTGACTTGGGTGTGGGTGTGGGTGTGATTGTAGGTGTCAGTATGATATGCATACCGGATTCAGCTAGTTCACATGGGTTGTATGGACTACAAATATGGCCGACAACAATAGTTTGACTAGGTTTTAAGTTTTCCATTTTGAAGTTTGTACACACACCAAAAATATTATACATATATCAACCGCATATTGACACCTGAGCCATATTCCTGAATCATGAGATCGATGTGACAATGAATCCTACTTATCTAAAAGAAAAGTGATGATGAATCCAACTGCCAAATCCATACATAGACCTCTTCTAGGTCTCATAAACTCAAATACTTGAATCTTCTCCTCTTTTTGGCGGTTGTTTTTAGTTCATGCTTATAGCCTATTAAAGTGACATTAAATATGTACAATACGTCATTCTAAGTATGTAATGTGGGCAGTTACCTAATCAGTTTAAGCTCGGCTTCTTCTTTCCTTTCTCAAGTCATCCTAATATTGACGTTAAACTAATCTTTTTTTTTTTTTGAGAAGGCTATTAAACTAATCTTCCTTACACCTTTTAACAATCATTTTTAATAATACTTGCAGCCAACTCAAATATTGCAGAACCTTCACGAGTACTTTCTTTCCTTATTTTTCGTCAAGCCTGGTCAATCACATCTTAAAACTATGTGCACACGGTATATACTTTTTGATTCTTAAGGGGAAGGTTTTGTGTTTTATTGAATAACTTTCTTCTTTGTGGGATGAAGTGCATGTAGTTAGGCCAAGATAATTGAAACTTGTAAAACTGCTTAAAAGAGGTGTCGGCATTGTGTCTACATAGAAATAATGGATATTCTATCTCATTTTGTGTGAACATACAACAGAATTTCTGAAATGTATTGCATGGAAAAGCAAATGTTATCATCCTACATAAATTATTTGACCAAAAGGCATGCACCTTTAATTTCTTCCTCTCTATTAAACTGAGGTATCAGATGTGCACATCCTGGGGATTGAAACTGCTCTGACTTCTTTCATGCTTTCATCACAAGTTCCACTGTGTTACATGAGTGGGTAACTGCCTATATTTTGTGATTGTTAACTCTCTATGTTTTGTGTCTGAGTTACTGACTTCATTTTTTTTTATGGTACTTGTACAACAGATGTAACATGTTATCAACTTAATCATGGTATATTGTTTATTTCATGCGACCGTACTTAGGATTTCTTTTTAATGATGCAGAAATGACAATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGTGTAAGTTGTGCTCGTTTGTTTACGGGTTATGCTAACTTCTGCAAATGTGTCTATCCAGAAAAGGAAAATACAGCTTTCTTGTGTTTCTGTTTGATATCTTTTATTGCCTAAAATGTGGATTAAATTGTTGGAATAGATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACT</genome_strand>
        <mrna_strand>CTGAGTCGAGTCAACTCTTGATTTATCCGAAACCCCACTA--ACACACACACAAAATCTTCAATTTCCACCA-AAATGGAGCAACCCCTGTTCCTAACACTCTTCTTATTATTCTCAATTGGGATCCAATTTGTCTCTTCCCATCAAGAATCAGGCAACTGGCATTGCGAAACCGACGAAGAATCCCGTATTTCTGCGGAGTTCATGCCTGGAGTCGTAACCCTTGATGGACACGCGGATGACTGGGACAATATTGAAGGATTTGAGTTTTCTCTACTTCCTGCTCTTGACCCAGATCATGACCATGAATATAAAGGGGGAAAGATGACCGTTAAG......................................................................GCTTTGCACGATGGCAAAGATGTCTACTTTTTGTTGAAAGTAGATGGAGAATATGTATACAAGAAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGACAAGAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGT........................................................................................................................................ATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303250" ref_strand="+" ref_description="SGN-E303250 [cLEX-5-E4]">
      <seq>atcttcttccatggcagccggttctactgagtcgagtcaactcttgatttatccaaaaccccattactactaacacacacaatcttctatttccacgacaaatggagcaatccctgttactatcaatcttcttattattctcaatcgggatccaattcgtctcttcccatcaagaatccggcaactggcattgcgaaaccgatgaagtatcccgtatttctgcggagttcaagcctggagtcgtaacccttgatggacacgctgatgattgggaaaatattgaaggatttgagttttctctccttcctgctcttgacccagatcatgaccatgaatacaaaggggggaaaatgaccgttaaggctttacacgatgggaaagatgtctactttttgttgcaagtagatggagaatatgtatacaagaaaggaaatgacaataattgcccatctgtagcactgatgtttcaagttggtgagagtgccacatatcatagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="49609" stop="45097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49309" g_stop="48948" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48947" i_stop="48878" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48877" g_stop="48810" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="430" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48809" i_stop="45466" i_length="3344">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45465" g_stop="45399" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="497" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E303250" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49309" e_stop="48948"/>
          <exon e_start="48877" e_stop="48810"/>
          <exon e_start="45465" e_stop="45399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTTCCATGGCAGCCGGTTCTACTGAGTCGAGTCAACTCTTGATTTATCCAAAACCCCATTACTACTAACACACACAATCTTCTATTTCCACGACAAATGGAGCAATCCCTGTTACTATCAATCTTCTTATTATTCTCAATCGGGATCCAATTCGTCTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGATGAAGTATCCCGTATTTCTGCGGAGTTCAGGCCTGGAGTCGTAACCCTTGATGGACACGCTGATGATTGGGAAAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATACAAAGGGGGGAAAATGACCGTTAAGGTATTATTAGATTCTTCTACAATGATTTCCTTGATTTGTTTTCTTGGGTTACTTACTTGATTTTGATTAGGCTTTACACGATGGGAAAGATGTCTACTTTTTGTTGCAAGTAGATGGAGAATATGTATACAAGAAAGGGTGAGTAAATGCTCTCAATAATTACCTATCTTGTGGGATTTTGGGATTTATTTAGTGACCTTGTGCTGGAACTATTCCTGTTTTTAGACTGTTGCTTATTGGAAAATTGATTATTAAATTACATACCTTATTTGGCATTGAGGTAACATCATTGGTGGTGTAGTTTCTCGTTTCTTTCTTTAACATGCTAAATCCTCAAGGCATTTCATGCTTCTTTAGAAATTTGAAGTTACCTTTCTTTTGATGTCTGTGAATCTATGCATTGCTACCCATTGGGTTTGAGAGACTTCCCAATATAGATTTTTTTTTGCTGAAAGACACTTGAAAAACAAATTTGTGTAAGTTATTCTAATGGATTTCTTCTAAATTAAAAATAGCTCTACTATGAAACTCGTTAGCAAAGGGTAATCTCCTTAATTAGAAGTTTAATGATTTTAATATGTCTTGTAGCTTGCTCTATTTTTAGGGAAAAGGAGACGTCTTATGAATTCTTTTTGTTCAACAAATTCCTAAATTGAACTCAATGAAATTGTAAATCAATTAGGAAACAGATAAATGAAATTTGTCAAAGTCAAACTAATCAGGAATAAGAAGAAAACATATTTCCGTCAACACGGCTGTAGAAATGATATTGCATAAACAGGGTGCCTCCCTCCTCCTTTCCCTATTCATGCATCATAAAGATGTCATATGATCGCCCCCTTACTTCCTCTTTCACCTCTATTACATTGTCCCACACTGGTTGAGGGAATAGTTTCTTGTCTCCTTATATAGTCTTGGGTAATCCTAGGTGCTGTCTCTGAAAAAAATGAAGGATCTGTCAGGTTTACATTATTTTCTACCTAAATTTGTGAAAAATCGTGATTTTGAGGGTTATTCAATCTTGACATGTAAGGTTTTGATGGCAAGGATGTGCACTATTCCCTAGTTGTGGTTTTTGAGGGTTATTCAATATTGACATGTAAGGTTTTGATTGCAAGGATGTGCACTATTTCCTAGTTGTGGTTGGGAAGAAGGGAAGCCAGATTTGGGAGTTAGAGATGAACTTCTGAAATAATAAAAAAAGAAAGTCACACTGGATTGAGCTTTAGTGGGGAAGATTTTCTTAGGTCTAGTTAAGTTTGAAATGAACTAAAACAAATGGAAAAAGACTAGTGTATTAGCATGAGGCAATGTTTAGGATAAAGACGAGAACAAGATGAGTGAGCCAAAAAGTTGACAGTGCTTGACATTTGCCCAAATAAATTTAAGGTAGCATTCAAGTGGTATTAGCGAGTGAATTTCCTGAAAATTTTGGTCCAAAGTGGAAGGTTGTAAGATGAGGTGATGCATGGAAAATGTGCTTTATTTACTTTTAACGGTTGGGGTGGGGGAAAACATTATAATTTCTGTAACATTGTCGAAGAGCCTTCCATCACGGTCAGTCAACAATTACTGCAAGCATGTGCCCTAGAAGATCATTTCTATCTGCACTGGTATACTTTCATCACATAATCATTGTCTCAAATAATGTGAGATATTGCTATAGAGTTGAAAAAGACTGTAGAATAGAGACTATTGGTATGTTTTATACAAAAAGGAAAAGTGAGGATGATCTTTTTCTCCTTTTTTGGTATAAAGACTCATGCATTTTCTCAATAAGTCATTATGTGCGCATGCCTAATCATCCTGAAGTCATTACTCATGGCTACTATCTTCTGCAACTGTTGTTATGAAATATGATGGTAACTTATTCGTTCTTTTGATTTGTCACAAATGCAAGAGAGATGGTTTTTGTATCAGAATTCTCACTCACTGGATTACTTCATTATCCAAAAAAGAACCACTGGAAAATTGATGTCTGAAGGCATGTTGGGATTTTTTTTTCTTTTACATCCGACATTTATGCTTTTCATTAATGTTATAAGTTGAATCACTATATTTTGTTTTCAGACCTTAAAGAATTTTTTACATTACGCTGCTCCCTTTTTTTTACGTCCTTTTACGAAACTTTTGGGGCATAAAAAAGATATAAATAGCCCTTCCTCTTTATAGGAATTCTATAGATATAAATATAAAATTAATGTCAAACTTCTTCCTTATTTCACATGGATCATTCAACTTGCCCAACCACCTGTTCCAATCTTAATTGACTTGGGTGTGGGTGTGGGTGTGATTGTAGGTGTCAGTATGATATGCATACCGGATTCAGCTAGTTCACATGGGTTGTATGGACTACAAATATGGCCGACAACAATAGTTTGACTAGGTTTTAAGTTTTCCATTTTGAAGTTTGTACACACACCAAAAATATTATACATATATCAACCGCATATTGACACCTGAGCCATATTCCTGAATCATGAGATCGATGTGACAATGAATCCTACTTATCTAAAAGAAAAGTGATGATGAATCCAACTGCCAAATCCATACATAGACCTCTTCTAGGTCTCATAAACTCAAATACTTGAATCTTCTCCTCTTTTTGGCGGTTGTTTTTAGTTCATGCTTATAGCCTATTAAAGTGACATTAAATATGTACAATACGTCATTCTAAGTATGTAATGTGGGCAGTTACCTAATCAGTTTAAGCTCGGCTTCTTCTTTCCTTTCTCAAGTCATCCTAATATTGACGTTAAACTAATCTTTTTTTTTTTTTGAGAAGGCTATTAAACTAATCTTCCTTACACCTTTTAACAATCATTTTTAATAATACTTGCAGCCAACTCAAATATTGCAGAACCTTCACGAGTACTTTCTTTCCTTATTTTTCGTCAAGCCTGGTCAATCACATCTTAAAACTATGTGCACACGGTATATACTTTTTGATTCTTAAGGGGAAGGTTTTGTGTTTTATTGAATAACTTTCTTCTTTGTGGGATGAAGTGCATGTAGTTAGGCCAAGATAATTGAAACTTGTAAAACTGCTTAAAAGAGGTGTCGGCATTGTGTCTACATAGAAATAATGGATATTCTATCTCATTTTGTGTGAACATACAACAGAATTTCTGAAATGTATTGCATGGAAAAGCAAATGTTATCATCCTACATAAATTATTTGACCAAAAGGCATGCACCTTTAATTTCTTCCTCTCTATTAAACTGAGGTATCAGATGTGCACATCCTGGGGATTGAAACTGCTCTGACTTCTTTCATGCTTTCATCACAAGTTCCACTGTGTTACATGAGTGGGTAACTGCCTATATTTTGTGATTGTTAACTCTCTATGTTTTGTGTCTGAGTTACTGACTTCATTTTTTTTTATGGTACTTGTACAACAGATGTAACATGTTATCAACTTAATCATGGTATATTGTTTATTTCATGCGACCGTACTTAGGATTTCTTTTTAATGATGCAGAAATGACAATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGT</genome_strand>
        <mrna_strand>ATCTTCTTCCATGGCAGCCGGTTCTACTGAGTCGAGTCAACTCTTGATTTATCCAAAACCCCATTACTACTAACACACACAATCTTCTATTTCCACGACAAATGGAGCAATCCCTGTTACTATCAATCTTCTTATTATTCTCAATCGGGATCCAATTCGTCTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGATGAAGTATCCCGTATTTCTGCGGAGTTCAAGCCTGGAGTCGTAACCCTTGATGGACACGCTGATGATTGGGAAAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATACAAAGGGGGGAAAATGACCGTTAAG......................................................................GCTTTACACGATGGGAAAGATGTCTACTTTTTGTTGCAAGTAGATGGAGAATATGTATACAAGAAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGACAATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343867" ref_strand="+" ref_description="SGN-E343867 [cTOF-12-H11]">
      <seq>gcaaggaatcctcatgatctgcaactatttcgagaacaatcaaatccgtcaaactcatcaggacatgtaccccccgccgttcttatggataagcaggaagtgcaatgccaatccttagagcctggacgattccacaacttgattggagctgagatccgaggaaaagtcgatggagcatttgactctggttatctaatgactgcgattgttaatggaaagatctttcgaggtgttctgtttggtccggcacctgatctagtaccacgaggacccgtgcttggtcataatccttcaccctctccgggacatattggtgtcaactacgcgaatcatataagtctgggatgtcgaaggcaacctcagcagcagcagttggtgcaactgcaagttccagaactcggacgacatagcatgggtaaagtaccaattagaagatcaacatcatcggtgatgagatcatctcatcaactagacaaggatacacagaaaagaagtgaacttgaaggagtggtgctcacactaggaggtccaggatgtggcaatgcaaaaacttaaattaatgataataacagagaattagaaagtctcatgagttgtgtgtttttgtacatgctaattaaggtagatatattatttggatccattctctatgtattcctttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="53603" stop="52148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53303" g_stop="53163" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53162" i_stop="53058" i_length="105">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53057" g_stop="52953" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="246" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52952" i_stop="52865" i_length="88">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52864" g_stop="52448" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="665" r_length="419" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E343867" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53303" e_stop="53163"/>
          <exon e_start="53057" e_stop="52953"/>
          <exon e_start="52864" e_stop="52448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGAATCCTCATGATCTGCAACTATTTCGAGAACAATCAAATCCGTCAAACTCATCAGGACATGTACCCCCCGCCGTTCTTATGGATAAGCAGGAAGTGCAATGCCAATCCTTAGAGCCTGGACGATTCCACAACTTGGTACGCCTTTGAAGTTAGCAAAAATTTGTTTGAGTCATTGTAGCATTTTCCAACTTTTATGTTGAATAAGAACCTAATGTCTCAATAATATAATGTACTACTCAGATTGGAGCTGAGATCCGAGGAAAAGTCGATGGAGCATTTGACTCTGGTTATCTAATGACTGCGATTGTTAATGGAAAGATCTTTCGAGGTGTTCTGTTTGCTCCGGTAAGGTCATATACCATTCAATTGAACCAAATTGTCAATTAGTACCTCAAACTCATCATCCATTTGATTCTTGTTATAAAAAAAAAAGGCACCTGATCTAGTACCACGAGGACCCGTGCTTGGTCATAATCCTTCACCCTCTCCGGGACATATTGGTGTCAACTACGCGAATCATATAAGTCTGGGATGTCGAAGGCAACCTCAGCAGCAGCAGTTGGTGCAACTGCAAGTTCCAGAACTCGGACGACATAGCATAGGTAAAGTACCAATTAGAAGATCAACATCATCGGTGATGAGATCATCTCATCAACTAGACAAGGATACACAGAAAAGAAGTGAACTTGAAGGAGTGGTGCTCACACTAGGAGGTCCAGGATGTGGCAATGCAAAAACTTAAATTAATGATAATAACAGAGAATTAGAAAGTCTCATGAG-TGTGTGTTTTTGTACATGCTAATTAAGGTAGATATATTA-TTGGATCCATTCTCTATGTATTCCTTTCAAT</genome_strand>
        <mrna_strand>GCAAGGAATCCTCATGATCTGCAACTATTTCGAGAACAATCAAATCCGTCAAACTCATCAGGACATGTACCCCCCGCCGTTCTTATGGATAAGCAGGAAGTGCAATGCCAATCCTTAGAGCCTGGACGATTCCACAACTTG.........................................................................................................ATTGGAGCTGAGATCCGAGGAAAAGTCGATGGAGCATTTGACTCTGGTTATCTAATGACTGCGATTGTTAATGGAAAGATCTTTCGAGGTGTTCTGTTTGGTCCG........................................................................................GCACCTGATCTAGTACCACGAGGACCCGTGCTTGGTCATAATCCTTCACCCTCTCCGGGACATATTGGTGTCAACTACGCGAATCATATAAGTCTGGGATGTCGAAGGCAACCTCAGCAGCAGCAGTTGGTGCAACTGCAAGTTCCAGAACTCGGACGACATAGCATGGGTAAAGTACCAATTAGAAGATCAACATCATCGGTGATGAGATCATCTCATCAACTAGACAAGGATACACAGAAAAGAAGTGAACTTGAAGGAGTGGTGCTCACACTAGGAGGTCCAGGATGTGGCAATGCAAAAACTTAAATTAATGATAATAACAGAGAATTAGAAAGTCTCATGAGTTGTGTGTTTTTGTACATGCTAATTAAGGTAGATATATTATTTGGATCCATTCTCTATGTATTCCTTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320799" ref_strand="+" ref_description="SGN-E320799 [cTOB-27-G6]">
      <seq>gagcgaccactcaatgagctacttatcttgcagtttggagtagaatatcctaatgggactagcagcttgtctggtggcagggtttctgggaatacaagtcattatgataagaaaagatttctgaaagaaagagacaatagctcggtatactagagcgagaacttgattcctttctcatgaatttaaacaattcaagatcatttttctgattcgtataaattgatttggcaggaagctatatgtaggggaaagaaggaagatatacaaacgacgggatctcaagaacttgagttcgtatcaaaagcagcttntcgatttagttctggtaggttataaaatgattttgtcatgctaccagccagtagtttcaagacatgaactaagcatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="54267" stop="53277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53967" g_stop="53577" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E320799" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53967" e_stop="53577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGACCACTCAATGAGCTACTTATCTTGCAGTTTGGAGTAGAATATCCTAATGGGACTAGCAGCTTGTCTGGTGGCAGGGTTTCTGGGAATACAAGTCATTATGATAAGAAAAGATTTCTGAAAGAAAGAGACAATAGCTCGGTATACTAGAGCGAGAACTTGATTCCTTTCTCATGAATTTAAACAATTCAAGATCATTTTTCTGATTCGTATAAATTGATTTGGCAGGAAGCTATATGTAGGGGAAAGAAGGAAGATATACAAACGACGGGATCTCAAGAACTTGAGTTCGTATCAAAAGCAGCTTTTCGATTTAGTTCTGGTAGGTTATAAAATGATTTTGTCATGCTAGCAGCCAGTAGTTTCAAGACATGAACTAAGCATGACT</genome_strand>
        <mrna_strand>GAGCGACCACTCAATGAGCTACTTATCTTGCAGTTTGGAGTAGAATATCCTAATGGGACTAGCAGCTTGTCTGGTGGCAGGGTTTCTGGGAATACAAGTCATTATGATAAGAAAAGATTTCTGAAAGAAAGAGACAATAGCTCGGTATACTAGAGCGAGAACTTGATTCCTTTCTCATGAATTTAAACAATTCAAGATCATTTTTCTGATTCGTATAAATTGATTTGGCAGGAAGCTATATGTAGGGGAAAGAAGGAAGATATACAAACGACGGGATCTCAAGAACTTGAGTTCGTATCAAAAGCAGCTTNTCGATTTAGTTCTGGTAGGTTATAAAATGATTTTGTCATGCTACCAGCCAGTAGTTTCAAGACATGAACTAAGCATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340728" ref_strand="+" ref_description="SGN-E340728 [cTOF-5-A17]">
      <seq>attaaagaagacagagcaaataaaaatgggatctttaggtggtgaagtatcagtatcattattacagaagaagaaaccaatgtggtcttctcctgaagtgaggggtgaaatgcctgttcctagggatagccacagtgctgttgcgattggtaataggctttttatatatggcggagattgtggtgaccgatatcaaggcgatgtcgatgttcttgatatggatacactaatgtggtcaaagctggatgttcttggaccgtcacctgatgctcgagccggtcatgcctctgtgaattttgggtcaaaggtatacgtgattggtggagttggagacaagaaatactacaatgatgtttgggttcttgatgtgataaattcttcatggactcagcttgatgtgacgggccaaaaaccacaggggcgattttctcatactgctgcttcccggaacacggatattgtaatctacggagggtgcggcgaggatgagcgaccactcaatgagctacttatcttgcagtttggagtagaatatcctaatgggactagcagcttgtctggtggcagggtttctgggaatacaagtcattatgataagaaaagatttctgaaagaaagagacaatagctcggaagctatatgtaggggaaagaaggaagatatacaaacgacggggatctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="56151" stop="53387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55851" g_stop="55771" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55770" i_stop="54671" i_length="1100">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54670" g_stop="54511" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="241" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54510" i_stop="54421" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54420" g_stop="54355" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="307" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54354" i_stop="54225" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54224" g_stop="54058" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="474" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54057" i_stop="53981" i_length="77">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53980" g_stop="53824" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="631" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53823" i_stop="53737" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53736" g_stop="53687" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="682" r_length="51" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E340728" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55851" e_stop="55771"/>
          <exon e_start="54670" e_stop="54511"/>
          <exon e_start="54420" e_stop="54355"/>
          <exon e_start="54224" e_stop="54058"/>
          <exon e_start="53980" e_stop="53824"/>
          <exon e_start="53736" e_stop="53687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAGAAGACAGAGCAAATAAAAATGGGATCTTTAGGTGGTGAAGTATCAGTATCATTATTACAGAAGAAGAAACCAATGTGGTCATATCCAAAGGTTATGGGTGTTCATCCTTCTGAGAGATGGGGTCATTCTTCTTGTAACTCTAATGGATTTGTCTATGTTTTTGGGGTAAGTCTATATTTGCTTCTTCAGAAATATTAGTTGGAACTGTATGTTCAAGAAATGGGAGTTTTAGTTTTGTCATTTGCTTCATGTTACTGTGTAGTTATATTTTTGGTTATTAGAAACTACTCTTTCTGGAGTTGTACTTTTGTTTTCCTATATATATGTTAGTAGTATGTATCTATTTGTTTCTTCTTGTTTTTGTAATGTTTATATATAAAAAAAAAAGAAAAGCAACTACATATGTGTGAAATGCTCAGTGATGCATTAAAAGGAGAAAAAAAATGAAGTGAAGGAGAAATTCATATTTTGCTTTAGGTTATGTCTGTTTTGCTTTTTTTATATTTAGAGAAACTGAATTTGTTGATGTTTTTCATGACCAAACATGTACTCATGAAGTTATTTTAAAGATGTAACTCAAATTTTCAACAAATCAAGTAAAAAATTTCATTGTTTGATGGAGATCATGCTGTTTGTTTTTTCCCCACTGTTCTTGAATAAGTGTTAAGGTGAAACTTAATCTGTTAATATTCATCAAAAAGACTGCTTTCATATTATTAGTCTGAGAGCTCTTGGTGCAGCGTTGATATGTTTAGACAAATTTATGTCTGATATATTCTTAATTAAATTGTATTTCTCTGTTTCAGGGATGTCGCGGGGGCTTACATTTTAGTGATGTACTTGTACTAAATCTTGAGGCAATGGCTTGGAGCATTCTTGTGACAACAGGACAAGGACCGGGGCCAAGAGATAGCCACAGTGCTGTTCTTATTGGTCACAGGATGGTGGTGTTTGGAGGTACAAATGGCTCAAGGAAGGTCAATGATATTCATGTATTGGATGTCAGGAGCCAAGAATGGACTCAACTCGAATGTCAAGGCAATCCACCTTCACCGCGTGAAAGTCACACCGCTACTATTGTTGGTGGTGATAAATTAGTGATCTTTGGTGGTAGTGGTGAAGGTGAGGCAAACTATTTGAATGATTTACATGTTTTGGACCTCAAAACTATGAGGTGGTCTTCTCCTGAAGTGAGGGGTGAAATGCCTGTTCCTAGGGATAGCCACAGTGCTGTTGCGATTGGTAATAGGCTTTTTATATATGGCGGAGATTGTGGTGACCGATATCAAGGCGATGTCGATGTTCTTGATATGGATACACTAATGTGGTCAAAGGTACTTGCTTCAGTATTCTTCTTGATTCACAGTCTGGATGTAGAGTTCTAAAGATTATGTTAGATGATAATTAGTTCTCTTTCTTACCAGCTGGATGTTCTTGGACCGTCACCTGATGCTCGAGCCGGTCATGCCTCTGTGAATTTTGGGTCAAAGGCAAGTAACTGATGCTGTAGCCTTTGTGTAATTAGGCTCTTTGTTTTTAGTATGTACTGCAAATGGAGTAAAGCTTTATTTTCGGTGAGCTATCCTCTAGAGAATGATGTTGAAATTCGATGTTCTACAGGTATACGTGATTGGTGGAGTTGGAGACAAGAAATACTACAATGATGTTTGGGTTCTTGATGTGATAAATTCTTCATGGACTCAGCTTGATGTGACGGGCCAAAAACCACAGGGGCGATTTTCTCATACTGCTGCTTCCCGGAACACGGATATTGTAATCTACGGAGGGTAAGTCTTTAATCCATTTTTTCCTGCCTGATCTCAGTAGATTGTATAGCTTTAAATTTGTTTCTTCAACTTTGCAGGTGCGGCGAGGATGAGCGACCACTCAATGAGCTACTTATCTTGCAGTTTGGAGTAGAATATCCTAATGGGACTAGCAGCTTGTCTGGTGGCAGGGTTTCTGGGAATACAAGTCATTATGATAAGAAAAGATTTCTGAAAGAAAGAGACAATAGCTCGGTATACTAGAGCGAGAACTTGATTCCTTTCTCATGAATTTAAACAATTCAAGATCATTTTTCTGATTCGTATAAATTGATTTGGCAGGAAGCTATATGTAGGGGAAAGAAGGAAGATATACAAACGAC-GGGATCTCA</genome_strand>
        <mrna_strand>ATTAAAGAAGACAGAGCAAATAAAAATGGGATCTTTAGGTGGTGAAGTATCAGTATCATTATTACAGAAGAAGAAACCAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCTTCTCCTGAAGTGAGGGGTGAAATGCCTGTTCCTAGGGATAGCCACAGTGCTGTTGCGATTGGTAATAGGCTTTTTATATATGGCGGAGATTGTGGTGACCGATATCAAGGCGATGTCGATGTTCTTGATATGGATACACTAATGTGGTCAAAG..........................................................................................CTGGATGTTCTTGGACCGTCACCTGATGCTCGAGCCGGTCATGCCTCTGTGAATTTTGGGTCAAAG..................................................................................................................................GTATACGTGATTGGTGGAGTTGGAGACAAGAAATACTACAATGATGTTTGGGTTCTTGATGTGATAAATTCTTCATGGACTCAGCTTGATGTGACGGGCCAAAAACCACAGGGGCGATTTTCTCATACTGCTGCTTCCCGGAACACGGATATTGTAATCTACGGAGG.............................................................................GTGCGGCGAGGATGAGCGACCACTCAATGAGCTACTTATCTTGCAGTTTGGAGTAGAATATCCTAATGGGACTAGCAGCTTGTCTGGTGGCAGGGTTTCTGGGAATACAAGTCATTATGATAAGAAAAGATTTCTGAAAGAAAGAGACAATAGCTCG.......................................................................................GAAGCTATATGTAGGGGAAAGAAGGAAGATATACAAACGACGGGGATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341719" ref_strand="+" ref_description="SGN-E341719 [cTOF-9-H7]">
      <seq>attaaagaagacagagcaaataaaaatgggatctttaggtggtgaagtatcagtatcattattacagaagaagaaaccaatgtggtcttctcctgaagtgaggggtgaaatgcctgttcctagggatagccacagtgctgttgcgattggtaataggctttttatatatggcggagattgtggtgaccgatatcaaggcgatgtcgatgttcttgatatggatacactaatgtggtcaaagctggatgttcttggaccgtcacctgatgctcgagccggtcatgcctctgtgaattttgggtcaaaggtatacgtgattggtggagttggagacaagaaatactacaatgatgtttgggttcttgatgtgataaattcttcatggactcagcttgatgtgacgggccaaaaaccacaggggcgattttctcatactgctgcttcccggaacacggatattgtaatctacggagggtgcggcgaggatgagcgaccactcaatgagctacttatcttgcagtttggagtagaatatcctaatgggactagcagcttgtctggtggcagggtttctgggaatacaagtcattatgataagaaaagatttctgaaagaaagagacaatagctcgggagctatatgtaggggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="56151" stop="53416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55851" g_stop="55771" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55770" i_stop="54671" i_length="1100">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54670" g_stop="54511" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="241" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54510" i_stop="54421" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54420" g_stop="54355" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="307" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54354" i_stop="54225" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54224" g_stop="54058" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="474" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54057" i_stop="53981" i_length="77">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53980" g_stop="53824" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="631" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53823" i_stop="53737" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53736" g_stop="53716" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="652" r_length="21" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E341719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55851" e_stop="55771"/>
          <exon e_start="54670" e_stop="54511"/>
          <exon e_start="54420" e_stop="54355"/>
          <exon e_start="54224" e_stop="54058"/>
          <exon e_start="53980" e_stop="53824"/>
          <exon e_start="53736" e_stop="53716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAGAAGACAGAGCAAATAAAAATGGGATCTTTAGGTGGTGAAGTATCAGTATCATTATTACAGAAGAAGAAACCAATGTGGTCATATCCAAAGGTTATGGGTGTTCATCCTTCTGAGAGATGGGGTCATTCTTCTTGTAACTCTAATGGATTTGTCTATGTTTTTGGGGTAAGTCTATATTTGCTTCTTCAGAAATATTAGTTGGAACTGTATGTTCAAGAAATGGGAGTTTTAGTTTTGTCATTTGCTTCATGTTACTGTGTAGTTATATTTTTGGTTATTAGAAACTACTCTTTCTGGAGTTGTACTTTTGTTTTCCTATATATATGTTAGTAGTATGTATCTATTTGTTTCTTCTTGTTTTTGTAATGTTTATATATAAAAAAAAAAGAAAAGCAACTACATATGTGTGAAATGCTCAGTGATGCATTAAAAGGAGAAAAAAAATGAAGTGAAGGAGAAATTCATATTTTGCTTTAGGTTATGTCTGTTTTGCTTTTTTTATATTTAGAGAAACTGAATTTGTTGATGTTTTTCATGACCAAACATGTACTCATGAAGTTATTTTAAAGATGTAACTCAAATTTTCAACAAATCAAGTAAAAAATTTCATTGTTTGATGGAGATCATGCTGTTTGTTTTTTCCCCACTGTTCTTGAATAAGTGTTAAGGTGAAACTTAATCTGTTAATATTCATCAAAAAGACTGCTTTCATATTATTAGTCTGAGAGCTCTTGGTGCAGCGTTGATATGTTTAGACAAATTTATGTCTGATATATTCTTAATTAAATTGTATTTCTCTGTTTCAGGGATGTCGCGGGGGCTTACATTTTAGTGATGTACTTGTACTAAATCTTGAGGCAATGGCTTGGAGCATTCTTGTGACAACAGGACAAGGACCGGGGCCAAGAGATAGCCACAGTGCTGTTCTTATTGGTCACAGGATGGTGGTGTTTGGAGGTACAAATGGCTCAAGGAAGGTCAATGATATTCATGTATTGGATGTCAGGAGCCAAGAATGGACTCAACTCGAATGTCAAGGCAATCCACCTTCACCGCGTGAAAGTCACACCGCTACTATTGTTGGTGGTGATAAATTAGTGATCTTTGGTGGTAGTGGTGAAGGTGAGGCAAACTATTTGAATGATTTACATGTTTTGGACCTCAAAACTATGAGGTGGTCTTCTCCTGAAGTGAGGGGTGAAATGCCTGTTCCTAGGGATAGCCACAGTGCTGTTGCGATTGGTAATAGGCTTTTTATATATGGCGGAGATTGTGGTGACCGATATCAAGGCGATGTCGATGTTCTTGATATGGATACACTAATGTGGTCAAAGGTACTTGCTTCAGTATTCTTCTTGATTCACAGTCTGGATGTAGAGTTCTAAAGATTATGTTAGATGATAATTAGTTCTCTTTCTTACCAGCTGGATGTTCTTGGACCGTCACCTGATGCTCGAGCCGGTCATGCCTCTGTGAATTTTGGGTCAAAGGCAAGTAACTGATGCTGTAGCCTTTGTGTAATTAGGCTCTTTGTTTTTAGTATGTACTGCAAATGGAGTAAAGCTTTATTTTCGGTGAGCTATCCTCTAGAGAATGATGTTGAAATTCGATGTTCTACAGGTATACGTGATTGGTGGAGTTGGAGACAAGAAATACTACAATGATGTTTGGGTTCTTGATGTGATAAATTCTTCATGGACTCAGCTTGATGTGACGGGCCAAAAACCACAGGGGCGATTTTCTCATACTGCTGCTTCCCGGAACACGGATATTGTAATCTACGGAGGGTAAGTCTTTAATCCATTTTTTCCTGCCTGATCTCAGTAGATTGTATAGCTTTAAATTTGTTTCTTCAACTTTGCAGGTGCGGCGAGGATGAGCGACCACTCAATGAGCTACTTATCTTGCAGTTTGGAGTAGAATATCCTAATGGGACTAGCAGCTTGTCTGGTGGCAGGGTTTCTGGGAATACAAGTCATTATGATAAGAAAAGATTTCTGAAAGAAAGAGACAATAGCTCGGTATACTAGAGCGAGAACTTGATTCCTTTCTCATGAATTTAAACAATTCAAGATCATTTTTCTGATTCGTATAAATTGATTTGGCAGGAAGCTATATGTAGGGGAAAG</genome_strand>
        <mrna_strand>ATTAAAGAAGACAGAGCAAATAAAAATGGGATCTTTAGGTGGTGAAGTATCAGTATCATTATTACAGAAGAAGAAACCAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCTTCTCCTGAAGTGAGGGGTGAAATGCCTGTTCCTAGGGATAGCCACAGTGCTGTTGCGATTGGTAATAGGCTTTTTATATATGGCGGAGATTGTGGTGACCGATATCAAGGCGATGTCGATGTTCTTGATATGGATACACTAATGTGGTCAAAG..........................................................................................CTGGATGTTCTTGGACCGTCACCTGATGCTCGAGCCGGTCATGCCTCTGTGAATTTTGGGTCAAAG..................................................................................................................................GTATACGTGATTGGTGGAGTTGGAGACAAGAAATACTACAATGATGTTTGGGTTCTTGATGTGATAAATTCTTCATGGACTCAGCTTGATGTGACGGGCCAAAAACCACAGGGGCGATTTTCTCATACTGCTGCTTCCCGGAACACGGATATTGTAATCTACGGAGG.............................................................................GTGCGGCGAGGATGAGCGACCACTCAATGAGCTACTTATCTTGCAGTTTGGAGTAGAATATCCTAATGGGACTAGCAGCTTGTCTGGTGGCAGGGTTTCTGGGAATACAAGTCATTATGATAAGAAAAGATTTCTGAAAGAAAGAGACAATAGCTCG.......................................................................................GGAGCTATATGTAGGGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462492" ref_strand="+" ref_description="SGN-E462492 [cPRO-11-H22]">
      <seq>gttcttcatctcaaatctgatattctggaaactgaagcactaaatctgctagccaagggcacgtttgtggacactctcttgacaacattgccagtcttatcagaggaggagcagaatattattgctgcaactcctgctcatccagcagggttatacgctttatatgctagttgcctggctgggtatatggtggaacaactttggaattttgcctcgcctgctgccattgcgttgattcatcctagtcttcttcctgtagcactaatgggtttccttgctaagctcactgtaattgttggaggtcctctggttggcaaacttatggatcactttcctcgggttcctgcatataattgtctatctatagtccagtgggagccgttgagaggctatctgggttggcattgggggttgcagtggagcgtgattggattgttttgttagctggaaccaatcgcccagttgctcttgctcaagcaaatgctgttctaagccgtattaaccttttatgcgagattgttggagcagcattatttggcattcttctctctaaatatgaactggtggtatgcttaaaattgctgctggnttgatgatgggggcacttcctattgtggtatctctgacatggctaaccacaagctttcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="69700" stop="66621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69400" g_stop="69308" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69307" i_stop="69203" i_length="105">
            <donor d_prob="0.806" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69202" g_stop="69139" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="157" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69138" i_stop="68218" i_length="921">
            <donor d_prob="0.851" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68217" g_stop="68093" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="282" r_length="125" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68092" i_stop="67902" i_length="191">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67901" g_stop="67812" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="372" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67811" i_stop="67620" i_length="192">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67619" g_stop="67552" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="440" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67551" i_stop="67458" i_length="94">
            <donor d_prob="0.874" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67457" g_stop="67383" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="515" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67382" i_stop="67145" i_length="238">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67144" g_stop="67043" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="616" r_length="101" r_score="0.951"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67042" i_stop="66956" i_length="87">
            <donor d_prob="0.936" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66955" g_stop="66921" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="650" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E462492" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69400" e_stop="69308"/>
          <exon e_start="69202" e_stop="69139"/>
          <exon e_start="68217" e_stop="68093"/>
          <exon e_start="67901" e_stop="67812"/>
          <exon e_start="67619" e_stop="67552"/>
          <exon e_start="67457" e_stop="67383"/>
          <exon e_start="67144" e_stop="67043"/>
          <exon e_start="66955" e_stop="66921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGAACATTTGTGGACACTCTCTTGACAACATTGCCAGTAGGAACTTTTATGAATAATTCTGATCAATCATTTCTATTGCCCCTGCTCCCATCTAACTATCGCTACTGCACTTTTGATTTTTCTATTGTTGATGTTGTGCAGGTCTTATCAGAGGAGGAGCAGAACATTATTGCTGCGACTCCTGCTCATCCAGCAGGGTTATACGGTTAGTCTTTTCCCTTAAGTTGAGTGGTGTCTCAAAGTGTAGTGGCAGAAGCTTAACTCATGTCTGAAAGTGCATGAGTTGCTGTCTGCTGTATTCTAAAATGATGATATATACCAAACCTCAACCTAGTTTGGAATTTACGAAAGGATACTTCTGTGAAATGCTAATACCTTGAGTATCTATAGAGGTCCTTTGAAAATTTGGACTATATAAGGTTTGGACATAATATATACTCCCTCTGTCCCAATTTTGCACTTCTCGTTTTTTAAGAGTCAAACAGTTTAAGTTTGGCGGCAATTTATGCATGGAATCTTCTAATTTTTGGAAATGAAATTTATATATTTATAAACTACGTAAAATAAATCACAATAATTAACAATTCAAAATGTTTATAAGATGTCTGAAAAATTTATGGTCATTTTGAATCTCGAAATCTGGAAAGTGTCACACAAAGCAATGTCATTGTACAAGCTGAAGATTTGAGAACTCCAACTTAAATCTTTTATCTTCAGTAGCAGAATATCAGTTGACTATTTTCCTTGTCATTTTTTCTCTAGATGATAGAGCTGGCTGTGCTGTGCTTTTGCTTCTGAGTGATTGTACTCACTCTGTTTCTGCATCTTCTTGATGCTTTTAATGATATCCTTTTTACTTCATAAAAAAAAAGAATATCTAATGTAGACTATGAAAAACATACTTAAAAAATTAACTAGGCTTCAGGCCACTATACTTGATTGGATTGTTCACTGGATTCTTTCTGTTAGAGTGAAGACTACTACCACTCCTCCTTTCCCCTGGCAGGTCAGGGAAGTTTGTTTGATGAGTAGTTTGACTTTGAAAACATGACCAGTTAGTCATTAGTTGCATTATGTCTGTAATGCATCATTTTATAGATTTCTGATGTCAAGTGCATTCAAACAGCTTTATATGCTAGTTGCTTGGCTGGGTATATGGTGGAACAACTTTGGAATTTCGCCTCACCTGCTGCCATTGCGTTGATTCATCCTAGTCTTCTTCCTGTGGCACTCATGGGTTTCCTCGCTAAGGTATTCATTAGTAAGTGATACAAAAGAATAAAGGCTAGAAGATAATTATTTCCATTTTACTGTTTTTGTACAGGAGGTTCCCAGATTATGTACCTGCAAGCACCATTGTAGTGCTGAGTTGCTTATACCAATAAAATACTAATTTTCCAGTTCAATTTTTTTTTTCCTTACATTCCGCTTTACTTGTACAGCTCGCTGTAATTGGTGGAGGTCCTCTGGTTGGAAAACTTATGGATCACTTTCCTCGGGTTCCTGCATATAATTGTCTATATATAGTCCAGGTATTCTTTTCTGTATGTGTTACTAAGGAGAGGTGTAGGCAACAAAAGTTCCTCGAAGTTCACTAATACTTCTATTCTGTCAGACAGCTGCCCAGTTAATGTCTGTTGGAATGATTATACATGGTCATACTCTTCACCCAACGTCTGCATCATCTTTACTTTTCCGACCTTGGTTTATTGTGCTTGTTCTAGTGGGAGCTGTTGAGAGGCTATCTGGGTTGGCATTGGGGGTTGCAGTGGAGCGTGATTGGGTTGTTTTGGTATTGTTATTGAACTTTGTTTTGTCCCCTATGTCTCACTTTTAACTCCTTATGTGTTCTTGAGCAATTTTCTAATTTAGTCTTGTTTATACAGTTAGCTGGAACCAATCGCCCAGTTGCTCTTGCTCAAGCAAATGCTGTTCTAAGCCGTATTAACCTTTTATGCGAGGTAATAGCCACATTAATTGGAAGCTATTCTTCTGCCTTCTTTTGTAGCATAATGGATATTAGTGATCAGAACTAGTATATTTTTAAGTATATTTAAAAAATTATCAATATTTTGTTTCTGTATAGTTTAGTTTATCAAATATACTTTACTTGGATTTTATAGTGATAATCATTTAAGTTAACAAAGTTAAGTCTTTTATCATTTACCTTATAATTCTCCTTTTTGTGGAATACTGTAGATTGTTGGAGCAGCATTATTTGGCATTCTTCTCGCTAAATATGAACTGGTGCTATGCTTAAAAATTGCTGCTGGTTTGATGATGGGGACACTTCCTATTGTGGTAAATCTTACTTCTGCTTCTATTTCATTTTGTGATTTGAAGTTTAAAGCACTGCATAGCGCTCAGATCTGGTCACGTATTTACTAGGTATCTCTGACATGGCTAACCAACAAGCTTTCCTC</genome_strand>
        <mrna_strand>GTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGCACGTTTGTGGACACTCTCTTGACAACATTGCCA.........................................................................................................GTCTTATCAGAGGAGGAGCAGAATATTATTGCTGCAACTCCTGCTCATCCAGCAGGGTTATACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATATGCTAGTTGCCTGGCTGGGTATATGGTGGAACAACTTTGGAATTTTGCCTCGCCTGCTGCCATTGCGTTGATTCATCCTAGTCTTCTTCCTGTAGCACTAATGGGTTTCCTTGCTAAG...............................................................................................................................................................................................CTCACTGTAATTGTTGGAGGTCCTCTGGTTGGCAAACTTATGGATCACTTTCCTCGGGTTCCTGCATATAATTGTCTATCTATAGTCCAG................................................................................................................................................................................................TGGGAGCCGTTGAGAGGCTATCTGGGTTGGCATTGGGGGTTGCAGTGGAGCGTGATTGGATTGTTTTG..............................................................................................TTAGCTGGAACCAATCGCCCAGTTGCTCTTGCTCAAGCAAATGCTGTTCTAAGCCGTATTAACCTTTTATGCGAG..............................................................................................................................................................................................................................................ATTGTTGGAGCAGCATTATTTGGCATTCTTCTCTCTAAATATGAACTGGTGGTATGCTT-AAAATTGCTGCTGGNTTGATGATGGGGGCACTTCCTATTGTG.......................................................................................GTATCTCTGACATGGCTAACC-ACAAGCTTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418478" ref_strand="+" ref_description="SGN-E418478 [STM-27-J23]">
      <seq>ctggagactgcatgagtagtcaccgagaagaattaccgtgcttcaaagcagagaagcagtttaataaacaatggtggttgttgtttctaacgctcagccttggtccgccttccttactctccgtcaagctcctcttacctcctcgtcttcttttagaatacgaccgttaactcctcgctttcgaccgttaactcctcgctttaccactcaaaggcttggaagttttaacactagatgctccataaataccgacgtcttaactgacattgcaactgatcaagaggttcgggatgatgttgcaactgatgattgtggctgtacaatacctgttcttcatctcaaatctgatattctggaaactgaagcactaaatctgctagccaagggcacgtttgtggacactctcttgacaacattgccagtcttatcagaggaggagcagaatattattgctgcaactcctgctcatccagcagggttatacgctttatatgctagttgcctggctgggtatatggtggaacaactttggaattttgcctcgcctgctgccattgcgttgattcatcctagtcttcttcctgtagcactaatgggtttccttgctaagctcactgtaattgttggaggtcctctggttggcaaacttatggatcactttcctcgggttcctgcatataattgtctatctatagtccagacagctgcccagttgatgtctgttggaatgattatacatggtcatactcttcatccaacgtctgcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="71299" stop="67360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70999" g_stop="70787" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70786" i_stop="69516" i_length="1271">
            <donor d_prob="0.986" d_score="0.92"/>
            <acceptor a_prob="0.941" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69515" g_stop="69308" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="421" r_length="208" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69307" i_stop="69203" i_length="105">
            <donor d_prob="0.806" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69202" g_stop="69139" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="485" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69138" i_stop="68218" i_length="921">
            <donor d_prob="0.851" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68217" g_stop="68093" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="610" r_length="125" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68092" i_stop="67902" i_length="191">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67901" g_stop="67812" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="700" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67811" i_stop="67729" i_length="83">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67728" g_stop="67660" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="769" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E418478" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70999" e_stop="70787"/>
          <exon e_start="69515" e_stop="69308"/>
          <exon e_start="69202" e_stop="69139"/>
          <exon e_start="68217" e_stop="68093"/>
          <exon e_start="67901" e_stop="67812"/>
          <exon e_start="67728" e_stop="67660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGACTGTATGAGTAGTCACCGAGAAGAAATACCGTGCTTCAAAGCAGTGAAGCAGTTTAATAAACAATGGTGGTTGTCGTTTCTCACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGTTCCTCTTACCTCCTCCTCTTCTTTTAGAATACGAACCTTAACTCCTCGCTTTCGATCGTTAACTCCTCGCTTTACCACGCAAAGGTGCGATGCTTTTCCTTGTAAATTGACAATGTAAATGAATGAGTTGCTACTGTGTGATCATGATCTTACTCCTTCAAATGCATTAGTTGAGAACCTGATTAGGTGGATTTATGCATACATTAGTGTCATTATGATCTAATTTCCTGTGGATTGTGAGTAGTGATGTTGATTCTTCTATTGTGTGGTTAGAAAATTTTACTAGTAGGAGAAAGGAAGCAAGATCACCTATAATAACTTACAATTAGATATTTTCCTATCATCATGAAACAGATATACTATGTCATGATAAAGCACACTAAGATTTTATAACAATATTAAAATATTCTTTACTATATTTATATAAATCGCGTCCAAAAAGAATGAATGAAATTGGAAATTGTCAGTACCTGTCGAGTAAGGCTGAGGTATATAGCGAAGTTGTCACGTCTAGAACTGTAGGAGCAGTTCAAACTTGGTATCCCATATTATAGGATGAATGTAAGTCTCATTGACAGTCGGTCTTATTATCATTTGTGATGGTTCAATTGGTGCTAACTGTGAGTTGTTTAATGCAGTTCGAGTGACTTCTTTATCATTGGATTACAGATGAAGTTAAAGCTTTTAAAACTGTTTGGTGCATTTTGGCTTCAGTGCAGTTGAATTGTATCTCTTTAGATAGGAGTATGCTTTCAACGTTATTGCTGGATGAACTAGTGACTGGCTTCTCTACTATGTATAGTTACATCCTAACAGGATTGGGCAGGCTAACTTCATATCACATGATTTTCATAAGTTGGTCTCTTGTTTCTAATCGGAAAACATATCTTGCTTTGCGATCCTACTTGTTTGCAATTTGTATGGTCCAAAGGAAGAGACTTGACTGGTGCGTAATAGTTTTTGTTGTGTGTCACATTCATGCATACAATACATATACATGTACACTCACATATATGTGGGTGCATGTGTTCCCCAGCTATCTTGAAGTTGAAACATAGTGCTGTTATTGCACACATTCATATGTTACAGAATTGAAGCAAGCAGTGGTCTCAACTCTTGGTGTTATTCAGCAAGTGATGAAGTATTATCACTAGAATAAATATTGCATGTTTTCTGGTAGGTTGCTTGTAGTTGGCATTAATGATGTTCAGTTGGTTTTACTAAATAGGAATCTGCTTATGTAGTACTGCAGTCTGCAGAAAATAGCAATGTGATGTGAGAGTAGTTGATTGTTATCTTTATCCTAAAGAATTACGGATTGTCATTGCAATTTAACCGTGTTTCTTTCAATTCAGGCTCGGAAGTCTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGAACATTTGTGGACACTCTCTTGACAACATTGCCAGTAGGAACTTTTATGAATAATTCTGATCAATCATTTCTATTGCCCCTGCTCCCATCTAACTATCGCTACTGCACTTTTGATTTTTCTATTGTTGATGTTGTGCAGGTCTTATCAGAGGAGGAGCAGAACATTATTGCTGCGACTCCTGCTCATCCAGCAGGGTTATACGGTTAGTCTTTTCCCTTAAGTTGAGTGGTGTCTCAAAGTGTAGTGGCAGAAGCTTAACTCATGTCTGAAAGTGCATGAGTTGCTGTCTGCTGTATTCTAAAATGATGATATATACCAAACCTCAACCTAGTTTGGAATTTACGAAAGGATACTTCTGTGAAATGCTAATACCTTGAGTATCTATAGAGGTCCTTTGAAAATTTGGACTATATAAGGTTTGGACATAATATATACTCCCTCTGTCCCAATTTTGCACTTCTCGTTTTTTAAGAGTCAAACAGTTTAAGTTTGGCGGCAATTTATGCATGGAATCTTCTAATTTTTGGAAATGAAATTTATATATTTATAAACTACGTAAAATAAATCACAATAATTAACAATTCAAAATGTTTATAAGATGTCTGAAAAATTTATGGTCATTTTGAATCTCGAAATCTGGAAAGTGTCACACAAAGCAATGTCATTGTACAAGCTGAAGATTTGAGAACTCCAACTTAAATCTTTTATCTTCAGTAGCAGAATATCAGTTGACTATTTTCCTTGTCATTTTTTCTCTAGATGATAGAGCTGGCTGTGCTGTGCTTTTGCTTCTGAGTGATTGTACTCACTCTGTTTCTGCATCTTCTTGATGCTTTTAATGATATCCTTTTTACTTCATAAAAAAAAAGAATATCTAATGTAGACTATGAAAAACATACTTAAAAAATTAACTAGGCTTCAGGCCACTATACTTGATTGGATTGTTCACTGGATTCTTTCTGTTAGAGTGAAGACTACTACCACTCCTCCTTTCCCCTGGCAGGTCAGGGAAGTTTGTTTGATGAGTAGTTTGACTTTGAAAACATGACCAGTTAGTCATTAGTTGCATTATGTCTGTAATGCATCATTTTATAGATTTCTGATGTCAAGTGCATTCAAACAGCTTTATATGCTAGTTGCTTGGCTGGGTATATGGTGGAACAACTTTGGAATTTCGCCTCACCTGCTGCCATTGCGTTGATTCATCCTAGTCTTCTTCCTGTGGCACTCATGGGTTTCCTCGCTAAGGTATTCATTAGTAAGTGATACAAAAGAATAAAGGCTAGAAGATAATTATTTCCATTTTACTGTTTTTGTACAGGAGGTTCCCAGATTATGTACCTGCAAGCACCATTGTAGTGCTGAGTTGCTTATACCAATAAAATACTAATTTTCCAGTTCAATTTTTTTTTTCCTTACATTCCGCTTTACTTGTACAGCTCGCTGTAATTGGTGGAGGTCCTCTGGTTGGAAAACTTATGGATCACTTTCCTCGGGTTCCTGCATATAATTGTCTATATATAGTCCAGGTATTCTTTTCTGTATGTGTTACTAAGGAGAGGTGTAGGCAACAAAAGTTCCTCGAAGTTCACTAATACTTCTATTCTGTCAGACAGCTGCCCAGTTAATGTCTGTTGGAATGATTATACATGGTCATACTCTTCACCCAACGTCTGCATCA</genome_strand>
        <mrna_strand>CTGGAGACTGCATGAGTAGTCACCGAGAAGAATTACCGTGCTTCAAAGCAGAGAAGCAGTTTAATAAACAATGGTGGTTGTTGTTTCTAACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGCTCCTCTTACCTCCTCGTCTTCTTTTAGAATACGACCGTTAACTCCTCGCTTTCGACCGTTAACTCCTCGCTTTACCACTCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGAAGTTTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGCACGTTTGTGGACACTCTCTTGACAACATTGCCA.........................................................................................................GTCTTATCAGAGGAGGAGCAGAATATTATTGCTGCAACTCCTGCTCATCCAGCAGGGTTATACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATATGCTAGTTGCCTGGCTGGGTATATGGTGGAACAACTTTGGAATTTTGCCTCGCCTGCTGCCATTGCGTTGATTCATCCTAGTCTTCTTCCTGTAGCACTAATGGGTTTCCTTGCTAAG...............................................................................................................................................................................................CTCACTGTAATTGTTGGAGGTCCTCTGGTTGGCAAACTTATGGATCACTTTCCTCGGGTTCCTGCATATAATTGTCTATCTATAGTCCAG...................................................................................ACAGCTGCCCAGTTGATGTCTGTTGGAATGATTATACATGGTCATACTCTTCATCCAACGTCTGCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441974" ref_strand="+" ref_description="SGN-E441974 [cSTA-31-L23]">
      <seq>ctggagactgcatgagtagtcaccgagaagaattaccgtgcttcaaagcagagaagcagtttaataaacaatggtggttgttgtttctaacgctcagccttggtccgccttccttactctccgtcaagctcctcttacctcctcgtcttcttttagaatacgaccgttaactcctcgctttcgaccgttaactcctcgctttaccactcaaaggcttggaagttttaacactagatgctccataaataccgacgtcttaactgacattgcaactgatcaagaggttcgggatgatgttgcaactgatgattgtggctgtacaatacctgttcttcatctcaaatctgatattctggaaactgaagcactaaatctgctagccaagggcacgtttgtggacactctcttgacaacattgccagtcttatcagaggaggagcagaatattattgctgcaactcctgctcatccagcagggttatacgctttatatgctagttgcctggctgggtatatggtggaacaactttggaattttgcctcgcctgctgccattgcgttgattcatcctagtcttcttcctgtagcactaatgggtttccttgctaagctcactgtaatgtgtggaggtcctctggttggcaaacttatggatcactttcctcggggtcctgcatataatcgnctatctatagtccanacagctgcccagttgatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="71299" stop="67513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70999" g_stop="70787" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70786" i_stop="69516" i_length="1271">
            <donor d_prob="0.986" d_score="0.92"/>
            <acceptor a_prob="0.941" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69515" g_stop="69308" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="421" r_length="208" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69307" i_stop="69203" i_length="105">
            <donor d_prob="0.806" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69202" g_stop="69139" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="485" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69138" i_stop="68218" i_length="921">
            <donor d_prob="0.851" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68217" g_stop="68093" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="610" r_length="125" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68092" i_stop="67902" i_length="191">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67901" g_stop="67812" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="700" r_length="90" r_score="0.900"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67811" i_stop="67729" i_length="83">
            <donor d_prob="0.900" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67728" g_stop="67708" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="721" r_length="21" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E441974" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70999" e_stop="70787"/>
          <exon e_start="69515" e_stop="69308"/>
          <exon e_start="69202" e_stop="69139"/>
          <exon e_start="68217" e_stop="68093"/>
          <exon e_start="67901" e_stop="67812"/>
          <exon e_start="67728" e_stop="67708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGACTGTATGAGTAGTCACCGAGAAGAAATACCGTGCTTCAAAGCAGTGAAGCAGTTTAATAAACAATGGTGGTTGTCGTTTCTCACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGTTCCTCTTACCTCCTCCTCTTCTTTTAGAATACGAACCTTAACTCCTCGCTTTCGATCGTTAACTCCTCGCTTTACCACGCAAAGGTGCGATGCTTTTCCTTGTAAATTGACAATGTAAATGAATGAGTTGCTACTGTGTGATCATGATCTTACTCCTTCAAATGCATTAGTTGAGAACCTGATTAGGTGGATTTATGCATACATTAGTGTCATTATGATCTAATTTCCTGTGGATTGTGAGTAGTGATGTTGATTCTTCTATTGTGTGGTTAGAAAATTTTACTAGTAGGAGAAAGGAAGCAAGATCACCTATAATAACTTACAATTAGATATTTTCCTATCATCATGAAACAGATATACTATGTCATGATAAAGCACACTAAGATTTTATAACAATATTAAAATATTCTTTACTATATTTATATAAATCGCGTCCAAAAAGAATGAATGAAATTGGAAATTGTCAGTACCTGTCGAGTAAGGCTGAGGTATATAGCGAAGTTGTCACGTCTAGAACTGTAGGAGCAGTTCAAACTTGGTATCCCATATTATAGGATGAATGTAAGTCTCATTGACAGTCGGTCTTATTATCATTTGTGATGGTTCAATTGGTGCTAACTGTGAGTTGTTTAATGCAGTTCGAGTGACTTCTTTATCATTGGATTACAGATGAAGTTAAAGCTTTTAAAACTGTTTGGTGCATTTTGGCTTCAGTGCAGTTGAATTGTATCTCTTTAGATAGGAGTATGCTTTCAACGTTATTGCTGGATGAACTAGTGACTGGCTTCTCTACTATGTATAGTTACATCCTAACAGGATTGGGCAGGCTAACTTCATATCACATGATTTTCATAAGTTGGTCTCTTGTTTCTAATCGGAAAACATATCTTGCTTTGCGATCCTACTTGTTTGCAATTTGTATGGTCCAAAGGAAGAGACTTGACTGGTGCGTAATAGTTTTTGTTGTGTGTCACATTCATGCATACAATACATATACATGTACACTCACATATATGTGGGTGCATGTGTTCCCCAGCTATCTTGAAGTTGAAACATAGTGCTGTTATTGCACACATTCATATGTTACAGAATTGAAGCAAGCAGTGGTCTCAACTCTTGGTGTTATTCAGCAAGTGATGAAGTATTATCACTAGAATAAATATTGCATGTTTTCTGGTAGGTTGCTTGTAGTTGGCATTAATGATGTTCAGTTGGTTTTACTAAATAGGAATCTGCTTATGTAGTACTGCAGTCTGCAGAAAATAGCAATGTGATGTGAGAGTAGTTGATTGTTATCTTTATCCTAAAGAATTACGGATTGTCATTGCAATTTAACCGTGTTTCTTTCAATTCAGGCTCGGAAGTCTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGAACATTTGTGGACACTCTCTTGACAACATTGCCAGTAGGAACTTTTATGAATAATTCTGATCAATCATTTCTATTGCCCCTGCTCCCATCTAACTATCGCTACTGCACTTTTGATTTTTCTATTGTTGATGTTGTGCAGGTCTTATCAGAGGAGGAGCAGAACATTATTGCTGCGACTCCTGCTCATCCAGCAGGGTTATACGGTTAGTCTTTTCCCTTAAGTTGAGTGGTGTCTCAAAGTGTAGTGGCAGAAGCTTAACTCATGTCTGAAAGTGCATGAGTTGCTGTCTGCTGTATTCTAAAATGATGATATATACCAAACCTCAACCTAGTTTGGAATTTACGAAAGGATACTTCTGTGAAATGCTAATACCTTGAGTATCTATAGAGGTCCTTTGAAAATTTGGACTATATAAGGTTTGGACATAATATATACTCCCTCTGTCCCAATTTTGCACTTCTCGTTTTTTAAGAGTCAAACAGTTTAAGTTTGGCGGCAATTTATGCATGGAATCTTCTAATTTTTGGAAATGAAATTTATATATTTATAAACTACGTAAAATAAATCACAATAATTAACAATTCAAAATGTTTATAAGATGTCTGAAAAATTTATGGTCATTTTGAATCTCGAAATCTGGAAAGTGTCACACAAAGCAATGTCATTGTACAAGCTGAAGATTTGAGAACTCCAACTTAAATCTTTTATCTTCAGTAGCAGAATATCAGTTGACTATTTTCCTTGTCATTTTTTCTCTAGATGATAGAGCTGGCTGTGCTGTGCTTTTGCTTCTGAGTGATTGTACTCACTCTGTTTCTGCATCTTCTTGATGCTTTTAATGATATCCTTTTTACTTCATAAAAAAAAAGAATATCTAATGTAGACTATGAAAAACATACTTAAAAAATTAACTAGGCTTCAGGCCACTATACTTGATTGGATTGTTCACTGGATTCTTTCTGTTAGAGTGAAGACTACTACCACTCCTCCTTTCCCCTGGCAGGTCAGGGAAGTTTGTTTGATGAGTAGTTTGACTTTGAAAACATGACCAGTTAGTCATTAGTTGCATTATGTCTGTAATGCATCATTTTATAGATTTCTGATGTCAAGTGCATTCAAACAGCTTTATATGCTAGTTGCTTGGCTGGGTATATGGTGGAACAACTTTGGAATTTCGCCTCACCTGCTGCCATTGCGTTGATTCATCCTAGTCTTCTTCCTGTGGCACTCATGGGTTTCCTCGCTAAGGTATTCATTAGTAAGTGATACAAAAGAATAAAGGCTAGAAGATAATTATTTCCATTTTACTGTTTTTGTACAGGAGGTTCCCAGATTATGTACCTGCAAGCACCATTGTAGTGCTGAGTTGCTTATACCAATAAAATACTAATTTTCCAGTTCAATTTTTTTTTTCCTTACATTCCGCTTTACTTGTACAGCTCGCTGTAATTGGTGGAGGTCCTCTGGTTGGAAAACTTATGGATCACTTTCCTCGGGTTCCTGCATATAATTGTCTATATATAGTCCAGGTATTCTTTTCTGTATGTGTTACTAAGGAGAGGTGTAGGCAACAAAAGTTCCTCGAAGTTCACTAATACTTCTATTCTGTCAGACAGCTGCCCAGTTAATGTCT</genome_strand>
        <mrna_strand>CTGGAGACTGCATGAGTAGTCACCGAGAAGAATTACCGTGCTTCAAAGCAGAGAAGCAGTTTAATAAACAATGGTGGTTGTTGTTTCTAACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGCTCCTCTTACCTCCTCGTCTTCTTTTAGAATACGACCGTTAACTCCTCGCTTTCGACCGTTAACTCCTCGCTTTACCACTCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGAAGTTTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGCACGTTTGTGGACACTCTCTTGACAACATTGCCA.........................................................................................................GTCTTATCAGAGGAGGAGCAGAATATTATTGCTGCAACTCCTGCTCATCCAGCAGGGTTATACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATATGCTAGTTGCCTGGCTGGGTATATGGTGGAACAACTTTGGAATTTTGCCTCGCCTGCTGCCATTGCGTTGATTCATCCTAGTCTTCTTCCTGTAGCACTAATGGGTTTCCTTGCTAAG...............................................................................................................................................................................................CTCACTGTAATGTGTGGAGGTCCTCTGGTTGGCAAACTTATGGATCACTTTCCTCGGGGTCCTGCATATAATCGNCTATCTATAGTCCAN...................................................................................ACAGCTGCCCAGTTGATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730903" ref_strand="+" ref_description="SGN-E730903 [LA25CC03]">
      <seq>cccttttagggccttttgaaatttccacatattcactgaccacccttctctccaatcgaatgacccaaatccaaacccaaacccaaaccctaggatctcgccggagctgaagactgtatgagtagtcaccgagaagaaataccgtgcttcaaagcagtgaagcagtttaataaacaatggtggttgtcgtttctcacgctcagccttggtccgccttccttactctccgtcaagttcctcttacctcctcctcttcttttagaatacgaaccttaactcctcgctttcgatcgttaactcctcgctttaccacgcaaaggctcgtaagtcttaacactagatgctccataaataccgacgtcttaactgacattgcaactgatcaagaggttcgggatgatgttgcaactgatgattgtggctgtacaatacctgttcttcatctcaaatctgatattctggaaactgaagcactaaatctgctagccaagggaacatttgtggacactctcttgacaacattgccagtcttatcagaggaggagcagaacattattgctgcgactcctgctcatccagcagggttatacgctttatatgctagttgcttggctgggtatatggtggaacaactttggaatttcgcctcacctgctgccattgcgttgattcatcctagtcttcttcctgtggcactcatgggtttcctcgctaagctcgctgtaattggtggaggtcctctggttggaaaacttatggatcactttccctcggttcctgcatataattgtctatatatagtccagacagctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="71394" stop="67512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71105" g_stop="70787" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70786" i_stop="69516" i_length="1271">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69515" g_stop="69308" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="527" r_length="208" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69307" i_stop="69203" i_length="105">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69202" g_stop="69139" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="591" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69138" i_stop="68218" i_length="921">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68217" g_stop="68093" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="716" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68092" i_stop="67902" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67901" g_stop="67812" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="806" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67811" i_stop="67729" i_length="83">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67728" g_stop="67720" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="815" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E730903" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71105" e_stop="70787"/>
          <exon e_start="69515" e_stop="69308"/>
          <exon e_start="69202" e_stop="69139"/>
          <exon e_start="68217" e_stop="68093"/>
          <exon e_start="67901" e_stop="67812"/>
          <exon e_start="67728" e_stop="67720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTCTATTCCTTTTGAAATTTCCACATATTCACTGACCACACATCTCTCCAATCGAATGACCCAAATCCAAACCCAAACCCAAACCCTAGGATCTCGCCGGAGCTGAAGACTGTATGAGTAGTCACCGAGAAGAAATACCGTGCTTCAAAGCAGTGAAGCAGTTTAATAAACAATGGTGGTTGTCGTTTCTCACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGTTCCTCTTACCTCCTCCTCTTCTTTTAGAATACGAACCTTAACTCCTCGCTTTCGATCGTTAACTCCTCGCTTTACCACGCAAAGGTGCGATGCTTTTCCTTGTAAATTGACAATGTAAATGAATGAGTTGCTACTGTGTGATCATGATCTTACTCCTTCAAATGCATTAGTTGAGAACCTGATTAGGTGGATTTATGCATACATTAGTGTCATTATGATCTAATTTCCTGTGGATTGTGAGTAGTGATGTTGATTCTTCTATTGTGTGGTTAGAAAATTTTACTAGTAGGAGAAAGGAAGCAAGATCACCTATAATAACTTACAATTAGATATTTTCCTATCATCATGAAACAGATATACTATGTCATGATAAAGCACACTAAGATTTTATAACAATATTAAAATATTCTTTACTATATTTATATAAATCGCGTCCAAAAAGAATGAATGAAATTGGAAATTGTCAGTACCTGTCGAGTAAGGCTGAGGTATATAGCGAAGTTGTCACGTCTAGAACTGTAGGAGCAGTTCAAACTTGGTATCCCATATTATAGGATGAATGTAAGTCTCATTGACAGTCGGTCTTATTATCATTTGTGATGGTTCAATTGGTGCTAACTGTGAGTTGTTTAATGCAGTTCGAGTGACTTCTTTATCATTGGATTACAGATGAAGTTAAAGCTTTTAAAACTGTTTGGTGCATTTTGGCTTCAGTGCAGTTGAATTGTATCTCTTTAGATAGGAGTATGCTTTCAACGTTATTGCTGGATGAACTAGTGACTGGCTTCTCTACTATGTATAGTTACATCCTAACAGGATTGGGCAGGCTAACTTCATATCACATGATTTTCATAAGTTGGTCTCTTGTTTCTAATCGGAAAACATATCTTGCTTTGCGATCCTACTTGTTTGCAATTTGTATGGTCCAAAGGAAGAGACTTGACTGGTGCGTAATAGTTTTTGTTGTGTGTCACATTCATGCATACAATACATATACATGTACACTCACATATATGTGGGTGCATGTGTTCCCCAGCTATCTTGAAGTTGAAACATAGTGCTGTTATTGCACACATTCATATGTTACAGAATTGAAGCAAGCAGTGGTCTCAACTCTTGGTGTTATTCAGCAAGTGATGAAGTATTATCACTAGAATAAATATTGCATGTTTTCTGGTAGGTTGCTTGTAGTTGGCATTAATGATGTTCAGTTGGTTTTACTAAATAGGAATCTGCTTATGTAGTACTGCAGTCTGCAGAAAATAGCAATGTGATGTGAGAGTAGTTGATTGTTATCTTTATCCTAAAGAATTACGGATTGTCATTGCAATTTAACCGTGTTTCTTTCAATTCAGGCTCGGAAGTCTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGAACATTTGTGGACACTCTCTTGACAACATTGCCAGTAGGAACTTTTATGAATAATTCTGATCAATCATTTCTATTGCCCCTGCTCCCATCTAACTATCGCTACTGCACTTTTGATTTTTCTATTGTTGATGTTGTGCAGGTCTTATCAGAGGAGGAGCAGAACATTATTGCTGCGACTCCTGCTCATCCAGCAGGGTTATACGGTTAGTCTTTTCCCTTAAGTTGAGTGGTGTCTCAAAGTGTAGTGGCAGAAGCTTAACTCATGTCTGAAAGTGCATGAGTTGCTGTCTGCTGTATTCTAAAATGATGATATATACCAAACCTCAACCTAGTTTGGAATTTACGAAAGGATACTTCTGTGAAATGCTAATACCTTGAGTATCTATAGAGGTCCTTTGAAAATTTGGACTATATAAGGTTTGGACATAATATATACTCCCTCTGTCCCAATTTTGCACTTCTCGTTTTTTAAGAGTCAAACAGTTTAAGTTTGGCGGCAATTTATGCATGGAATCTTCTAATTTTTGGAAATGAAATTTATATATTTATAAACTACGTAAAATAAATCACAATAATTAACAATTCAAAATGTTTATAAGATGTCTGAAAAATTTATGGTCATTTTGAATCTCGAAATCTGGAAAGTGTCACACAAAGCAATGTCATTGTACAAGCTGAAGATTTGAGAACTCCAACTTAAATCTTTTATCTTCAGTAGCAGAATATCAGTTGACTATTTTCCTTGTCATTTTTTCTCTAGATGATAGAGCTGGCTGTGCTGTGCTTTTGCTTCTGAGTGATTGTACTCACTCTGTTTCTGCATCTTCTTGATGCTTTTAATGATATCCTTTTTACTTCATAAAAAAAAAGAATATCTAATGTAGACTATGAAAAACATACTTAAAAAATTAACTAGGCTTCAGGCCACTATACTTGATTGGATTGTTCACTGGATTCTTTCTGTTAGAGTGAAGACTACTACCACTCCTCCTTTCCCCTGGCAGGTCAGGGAAGTTTGTTTGATGAGTAGTTTGACTTTGAAAACATGACCAGTTAGTCATTAGTTGCATTATGTCTGTAATGCATCATTTTATAGATTTCTGATGTCAAGTGCATTCAAACAGCTTTATATGCTAGTTGCTTGGCTGGGTATATGGTGGAACAACTTTGGAATTTCGCCTCACCTGCTGCCATTGCGTTGATTCATCCTAGTCTTCTTCCTGTGGCACTCATGGGTTTCCTCGCTAAGGTATTCATTAGTAAGTGATACAAAAGAATAAAGGCTAGAAGATAATTATTTCCATTTTACTGTTTTTGTACAGGAGGTTCCCAGATTATGTACCTGCAAGCACCATTGTAGTGCTGAGTTGCTTATACCAATAAAATACTAATTTTCCAGTTCAATTTTTTTTTTCCTTACATTCCGCTTTACTTGTACAGCTCGCTGTAATTGGTGGAGGTCCTCTGGTTGGAAAACTTATGGATCACTTTCCTCGGGTTCCTGCATATAATTGTCTATATATAGTCCAGGTATTCTTTTCTGTATGTGTTACTAAGGAGAGGTGTAGGCAACAAAAGTTCCTCGAAGTTCACTAATACTTCTATTCTGTCAGACAGCTGCC</genome_strand>
        <mrna_strand>CCCTTTTAGGGCCTTTTGAAATTTCCACATATTCACTGACCACCCTTCTCTCCAATCGAATGACCCAAATCCAAACCCAAACCCAAACCCTAGGATCTCGCCGGAGCTGAAGACTGTATGAGTAGTCACCGAGAAGAAATACCGTGCTTCAAAGCAGTGAAGCAGTTTAATAAACAATGGTGGTTGTCGTTTCTCACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGTTCCTCTTACCTCCTCCTCTTCTTTTAGAATACGAACCTTAACTCCTCGCTTTCGATCGTTAACTCCTCGCTTTACCACGCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTAAGTCTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGAACATTTGTGGACACTCTCTTGACAACATTGCCA.........................................................................................................GTCTTATCAGAGGAGGAGCAGAACATTATTGCTGCGACTCCTGCTCATCCAGCAGGGTTATACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATATGCTAGTTGCTTGGCTGGGTATATGGTGGAACAACTTTGGAATTTCGCCTCACCTGCTGCCATTGCGTTGATTCATCCTAGTCTTCTTCCTGTGGCACTCATGGGTTTCCTCGCTAAG...............................................................................................................................................................................................CTCGCTGTAATTGGTGGAGGTCCTCTGGTTGGAAAACTTATGGATCACTTTCCCTCGGTTCCTGCATATAATTGTCTATATATAGTCCAG...................................................................................ACAGCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700565" ref_strand="+" ref_description="SGN-E700565 [FA13BH11]">
      <seq>acccatttgtgattaatccgccgtctctctattccttttgaaatttccacatattcactgaccacacatctctccaatcgaatgacccaaatccaaacccaaacccaaaccctaggatctcgccggagctgaagactgtatgagtagtcaccgagaagaaataccgtgcttcaaagcagtgaagcagtttaataaacaatggtggttgtcgtttctcacgctcagccttggtccgccttccttactctccgtcaagttcctcttacctcctcctcttcttttagaatacgaaccttaactcctcgctttcgatcgttaactcctcgctttaccacgcaaaggctcggaagtcttaacactagatgctccataaataccgacgtcttaactgacattgcaactgatcaagaggttcgggatgatgttgcaactgatgattgtggctgtacaatacctgttcttcatctcaaatctgatattctggaaactgaagcactaaatctgctagccaagggaacatttgtggacactctcttgacaacattgccagtcttatcagaggaggagcagaacattattgctgcgactcctgctcatccagcagggttatacgctttatatgctagttgcttggctgggtatatggtggaacaactttggaatttcgcctcacctgctgccattgcgttgattcatcctagtcttcttcctgtggcactcatgggtttcctcgctaagctcgctgtaattggtggaggtcctctggttggaaaacttatggatcactttcctcgggttcctgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="71427" stop="67535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71127" g_stop="70787" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70786" i_stop="69516" i_length="1271">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69515" g_stop="69308" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="549" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69307" i_stop="69203" i_length="105">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69202" g_stop="69139" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="613" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69138" i_stop="68218" i_length="921">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68217" g_stop="68093" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="738" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68092" i_stop="67902" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67901" g_stop="67835" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="805" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E700565" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71127" e_stop="70787"/>
          <exon e_start="69515" e_stop="69308"/>
          <exon e_start="69202" e_stop="69139"/>
          <exon e_start="68217" e_stop="68093"/>
          <exon e_start="67901" e_stop="67835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATTTGTGATTAATCCGCCGTCTCTCTATTCCTTTTGAAATTTCCACATATTCACTGACCACACATCTCTCCAATCGAATGACCCAAATCCAAACCCAAACCCAAACCCTAGGATCTCGCCGGAGCTGAAGACTGTATGAGTAGTCACCGAGAAGAAATACCGTGCTTCAAAGCAGTGAAGCAGTTTAATAAACAATGGTGGTTGTCGTTTCTCACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGTTCCTCTTACCTCCTCCTCTTCTTTTAGAATACGAACCTTAACTCCTCGCTTTCGATCGTTAACTCCTCGCTTTACCACGCAAAGGTGCGATGCTTTTCCTTGTAAATTGACAATGTAAATGAATGAGTTGCTACTGTGTGATCATGATCTTACTCCTTCAAATGCATTAGTTGAGAACCTGATTAGGTGGATTTATGCATACATTAGTGTCATTATGATCTAATTTCCTGTGGATTGTGAGTAGTGATGTTGATTCTTCTATTGTGTGGTTAGAAAATTTTACTAGTAGGAGAAAGGAAGCAAGATCACCTATAATAACTTACAATTAGATATTTTCCTATCATCATGAAACAGATATACTATGTCATGATAAAGCACACTAAGATTTTATAACAATATTAAAATATTCTTTACTATATTTATATAAATCGCGTCCAAAAAGAATGAATGAAATTGGAAATTGTCAGTACCTGTCGAGTAAGGCTGAGGTATATAGCGAAGTTGTCACGTCTAGAACTGTAGGAGCAGTTCAAACTTGGTATCCCATATTATAGGATGAATGTAAGTCTCATTGACAGTCGGTCTTATTATCATTTGTGATGGTTCAATTGGTGCTAACTGTGAGTTGTTTAATGCAGTTCGAGTGACTTCTTTATCATTGGATTACAGATGAAGTTAAAGCTTTTAAAACTGTTTGGTGCATTTTGGCTTCAGTGCAGTTGAATTGTATCTCTTTAGATAGGAGTATGCTTTCAACGTTATTGCTGGATGAACTAGTGACTGGCTTCTCTACTATGTATAGTTACATCCTAACAGGATTGGGCAGGCTAACTTCATATCACATGATTTTCATAAGTTGGTCTCTTGTTTCTAATCGGAAAACATATCTTGCTTTGCGATCCTACTTGTTTGCAATTTGTATGGTCCAAAGGAAGAGACTTGACTGGTGCGTAATAGTTTTTGTTGTGTGTCACATTCATGCATACAATACATATACATGTACACTCACATATATGTGGGTGCATGTGTTCCCCAGCTATCTTGAAGTTGAAACATAGTGCTGTTATTGCACACATTCATATGTTACAGAATTGAAGCAAGCAGTGGTCTCAACTCTTGGTGTTATTCAGCAAGTGATGAAGTATTATCACTAGAATAAATATTGCATGTTTTCTGGTAGGTTGCTTGTAGTTGGCATTAATGATGTTCAGTTGGTTTTACTAAATAGGAATCTGCTTATGTAGTACTGCAGTCTGCAGAAAATAGCAATGTGATGTGAGAGTAGTTGATTGTTATCTTTATCCTAAAGAATTACGGATTGTCATTGCAATTTAACCGTGTTTCTTTCAATTCAGGCTCGGAAGTCTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGAACATTTGTGGACACTCTCTTGACAACATTGCCAGTAGGAACTTTTATGAATAATTCTGATCAATCATTTCTATTGCCCCTGCTCCCATCTAACTATCGCTACTGCACTTTTGATTTTTCTATTGTTGATGTTGTGCAGGTCTTATCAGAGGAGGAGCAGAACATTATTGCTGCGACTCCTGCTCATCCAGCAGGGTTATACGGTTAGTCTTTTCCCTTAAGTTGAGTGGTGTCTCAAAGTGTAGTGGCAGAAGCTTAACTCATGTCTGAAAGTGCATGAGTTGCTGTCTGCTGTATTCTAAAATGATGATATATACCAAACCTCAACCTAGTTTGGAATTTACGAAAGGATACTTCTGTGAAATGCTAATACCTTGAGTATCTATAGAGGTCCTTTGAAAATTTGGACTATATAAGGTTTGGACATAATATATACTCCCTCTGTCCCAATTTTGCACTTCTCGTTTTTTAAGAGTCAAACAGTTTAAGTTTGGCGGCAATTTATGCATGGAATCTTCTAATTTTTGGAAATGAAATTTATATATTTATAAACTACGTAAAATAAATCACAATAATTAACAATTCAAAATGTTTATAAGATGTCTGAAAAATTTATGGTCATTTTGAATCTCGAAATCTGGAAAGTGTCACACAAAGCAATGTCATTGTACAAGCTGAAGATTTGAGAACTCCAACTTAAATCTTTTATCTTCAGTAGCAGAATATCAGTTGACTATTTTCCTTGTCATTTTTTCTCTAGATGATAGAGCTGGCTGTGCTGTGCTTTTGCTTCTGAGTGATTGTACTCACTCTGTTTCTGCATCTTCTTGATGCTTTTAATGATATCCTTTTTACTTCATAAAAAAAAAGAATATCTAATGTAGACTATGAAAAACATACTTAAAAAATTAACTAGGCTTCAGGCCACTATACTTGATTGGATTGTTCACTGGATTCTTTCTGTTAGAGTGAAGACTACTACCACTCCTCCTTTCCCCTGGCAGGTCAGGGAAGTTTGTTTGATGAGTAGTTTGACTTTGAAAACATGACCAGTTAGTCATTAGTTGCATTATGTCTGTAATGCATCATTTTATAGATTTCTGATGTCAAGTGCATTCAAACAGCTTTATATGCTAGTTGCTTGGCTGGGTATATGGTGGAACAACTTTGGAATTTCGCCTCACCTGCTGCCATTGCGTTGATTCATCCTAGTCTTCTTCCTGTGGCACTCATGGGTTTCCTCGCTAAGGTATTCATTAGTAAGTGATACAAAAGAATAAAGGCTAGAAGATAATTATTTCCATTTTACTGTTTTTGTACAGGAGGTTCCCAGATTATGTACCTGCAAGCACCATTGTAGTGCTGAGTTGCTTATACCAATAAAATACTAATTTTCCAGTTCAATTTTTTTTTTCCTTACATTCCGCTTTACTTGTACAGCTCGCTGTAATTGGTGGAGGTCCTCTGGTTGGAAAACTTATGGATCACTTTCCTCGGGTTCCTGCAT</genome_strand>
        <mrna_strand>ACCCATTTGTGATTAATCCGCCGTCTCTCTATTCCTTTTGAAATTTCCACATATTCACTGACCACACATCTCTCCAATCGAATGACCCAAATCCAAACCCAAACCCAAACCCTAGGATCTCGCCGGAGCTGAAGACTGTATGAGTAGTCACCGAGAAGAAATACCGTGCTTCAAAGCAGTGAAGCAGTTTAATAAACAATGGTGGTTGTCGTTTCTCACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGTTCCTCTTACCTCCTCCTCTTCTTTTAGAATACGAACCTTAACTCCTCGCTTTCGATCGTTAACTCCTCGCTTTACCACGCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGGAAGTCTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGAACATTTGTGGACACTCTCTTGACAACATTGCCA.........................................................................................................GTCTTATCAGAGGAGGAGCAGAACATTATTGCTGCGACTCCTGCTCATCCAGCAGGGTTATACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATATGCTAGTTGCTTGGCTGGGTATATGGTGGAACAACTTTGGAATTTCGCCTCACCTGCTGCCATTGCGTTGATTCATCCTAGTCTTCTTCCTGTGGCACTCATGGGTTTCCTCGCTAAG...............................................................................................................................................................................................CTCGCTGTAATTGGTGGAGGTCCTCTGGTTGGAAAACTTATGGATCACTTTCCTCGGGTTCCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441975" ref_strand="+" ref_description="SGN-E441975 [cSTA-31-L23]">
      <seq>ctgttagactgcatgagtagtcaccgagaagaatggccgtgcttcaaagcagagaagcagtttaataaacaatggtggttgttgtttctaacgctcagccttggtccgccttccttactctccgtcaagctcctcttacctcctcgtcttcttttagaatacgaccgttaactcctcgctttcgaccgttaactcctcgctttaccactcaaaggcttggaagttttaacactagatgctccataaataccgacgtcttaactgacattgcaactgatcaagaggttcgggatgatgttgcaactgatgattgtggctgtacaatacctgttcttcatctcaaatctgatattctggaaactgaagcactaaatctgctagccaagggcacgtttgtggacactctcttgacaacattgccagtcttatcagaggaggagcagaatattattgctgcaactcctgctcatccagcagggttatacgctttatatgctagttgcctggctgggtatatggtggaacaactttggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="71295" stop="67867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70999" g_stop="70787" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70786" i_stop="69516" i_length="1271">
            <donor d_prob="0.986" d_score="0.92"/>
            <acceptor a_prob="0.941" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69515" g_stop="69308" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="422" r_length="208" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69307" i_stop="69203" i_length="105">
            <donor d_prob="0.806" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69202" g_stop="69139" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="486" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69138" i_stop="68218" i_length="921">
            <donor d_prob="0.851" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68217" g_stop="68167" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="537" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E441975" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70999" e_stop="70787"/>
          <exon e_start="69515" e_stop="69308"/>
          <exon e_start="69202" e_stop="69139"/>
          <exon e_start="68217" e_stop="68167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTG-AAGACTGTATGAGTAGTCACCGAGAAGAAATACCGTGCTTCAAAGCAGTGAAGCAGTTTAATAAACAATGGTGGTTGTCGTTTCTCACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGTTCCTCTTACCTCCTCCTCTTCTTTTAGAATACGAACCTTAACTCCTCGCTTTCGATCGTTAACTCCTCGCTTTACCACGCAAAGGTGCGATGCTTTTCCTTGTAAATTGACAATGTAAATGAATGAGTTGCTACTGTGTGATCATGATCTTACTCCTTCAAATGCATTAGTTGAGAACCTGATTAGGTGGATTTATGCATACATTAGTGTCATTATGATCTAATTTCCTGTGGATTGTGAGTAGTGATGTTGATTCTTCTATTGTGTGGTTAGAAAATTTTACTAGTAGGAGAAAGGAAGCAAGATCACCTATAATAACTTACAATTAGATATTTTCCTATCATCATGAAACAGATATACTATGTCATGATAAAGCACACTAAGATTTTATAACAATATTAAAATATTCTTTACTATATTTATATAAATCGCGTCCAAAAAGAATGAATGAAATTGGAAATTGTCAGTACCTGTCGAGTAAGGCTGAGGTATATAGCGAAGTTGTCACGTCTAGAACTGTAGGAGCAGTTCAAACTTGGTATCCCATATTATAGGATGAATGTAAGTCTCATTGACAGTCGGTCTTATTATCATTTGTGATGGTTCAATTGGTGCTAACTGTGAGTTGTTTAATGCAGTTCGAGTGACTTCTTTATCATTGGATTACAGATGAAGTTAAAGCTTTTAAAACTGTTTGGTGCATTTTGGCTTCAGTGCAGTTGAATTGTATCTCTTTAGATAGGAGTATGCTTTCAACGTTATTGCTGGATGAACTAGTGACTGGCTTCTCTACTATGTATAGTTACATCCTAACAGGATTGGGCAGGCTAACTTCATATCACATGATTTTCATAAGTTGGTCTCTTGTTTCTAATCGGAAAACATATCTTGCTTTGCGATCCTACTTGTTTGCAATTTGTATGGTCCAAAGGAAGAGACTTGACTGGTGCGTAATAGTTTTTGTTGTGTGTCACATTCATGCATACAATACATATACATGTACACTCACATATATGTGGGTGCATGTGTTCCCCAGCTATCTTGAAGTTGAAACATAGTGCTGTTATTGCACACATTCATATGTTACAGAATTGAAGCAAGCAGTGGTCTCAACTCTTGGTGTTATTCAGCAAGTGATGAAGTATTATCACTAGAATAAATATTGCATGTTTTCTGGTAGGTTGCTTGTAGTTGGCATTAATGATGTTCAGTTGGTTTTACTAAATAGGAATCTGCTTATGTAGTACTGCAGTCTGCAGAAAATAGCAATGTGATGTGAGAGTAGTTGATTGTTATCTTTATCCTAAAGAATTACGGATTGTCATTGCAATTTAACCGTGTTTCTTTCAATTCAGGCTCGGAAGTCTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGAACATTTGTGGACACTCTCTTGACAACATTGCCAGTAGGAACTTTTATGAATAATTCTGATCAATCATTTCTATTGCCCCTGCTCCCATCTAACTATCGCTACTGCACTTTTGATTTTTCTATTGTTGATGTTGTGCAGGTCTTATCAGAGGAGGAGCAGAACATTATTGCTGCGACTCCTGCTCATCCAGCAGGGTTATACGGTTAGTCTTTTCCCTTAAGTTGAGTGGTGTCTCAAAGTGTAGTGGCAGAAGCTTAACTCATGTCTGAAAGTGCATGAGTTGCTGTCTGCTGTATTCTAAAATGATGATATATACCAAACCTCAACCTAGTTTGGAATTTACGAAAGGATACTTCTGTGAAATGCTAATACCTTGAGTATCTATAGAGGTCCTTTGAAAATTTGGACTATATAAGGTTTGGACATAATATATACTCCCTCTGTCCCAATTTTGCACTTCTCGTTTTTTAAGAGTCAAACAGTTTAAGTTTGGCGGCAATTTATGCATGGAATCTTCTAATTTTTGGAAATGAAATTTATATATTTATAAACTACGTAAAATAAATCACAATAATTAACAATTCAAAATGTTTATAAGATGTCTGAAAAATTTATGGTCATTTTGAATCTCGAAATCTGGAAAGTGTCACACAAAGCAATGTCATTGTACAAGCTGAAGATTTGAGAACTCCAACTTAAATCTTTTATCTTCAGTAGCAGAATATCAGTTGACTATTTTCCTTGTCATTTTTTCTCTAGATGATAGAGCTGGCTGTGCTGTGCTTTTGCTTCTGAGTGATTGTACTCACTCTGTTTCTGCATCTTCTTGATGCTTTTAATGATATCCTTTTTACTTCATAAAAAAAAAGAATATCTAATGTAGACTATGAAAAACATACTTAAAAAATTAACTAGGCTTCAGGCCACTATACTTGATTGGATTGTTCACTGGATTCTTTCTGTTAGAGTGAAGACTACTACCACTCCTCCTTTCCCCTGGCAGGTCAGGGAAGTTTGTTTGATGAGTAGTTTGACTTTGAAAACATGACCAGTTAGTCATTAGTTGCATTATGTCTGTAATGCATCATTTTATAGATTTCTGATGTCAAGTGCATTCAAACAGCTTTATATGCTAGTTGCTTGGCTGGGTATATGGTGGAACAACTTTGGAATT</genome_strand>
        <mrna_strand>CTGTTAGACTGCATGAGTAGTCACCGAGAAGAATGGCCGTGCTTCAAAGCAGAGAAGCAGTTTAATAAACAATGGTGGTTGTTGTTTCTAACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGCTCCTCTTACCTCCTCGTCTTCTTTTAGAATACGACCGTTAACTCCTCGCTTTCGACCGTTAACTCCTCGCTTTACCACTCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGAAGTTTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGCACGTTTGTGGACACTCTCTTGACAACATTGCCA.........................................................................................................GTCTTATCAGAGGAGGAGCAGAATATTATTGCTGCAACTCCTGCTCATCCAGCAGGGTTATACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATATGCTAGTTGCCTGGCTGGGTATATGGTGGAACAACTTTGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478212" ref_strand="+" ref_description="SGN-E478212 [cSTD-3-L19]">
      <seq>tgaaatttccacgaattcactgaccacacatcatctccaatcgaatgacccaaatccaaaccctaagatctcgccggagctggagactgcatgagtagtcaccgagaagaattaccgtgcttcaaagcatataagcagtctaataaacaatggtggctgtcgtttctaacgctcagccttggtccgacttccttactctccgtcaagctactcttacctcctcgtcttcttttataatacgaccgttaactcctcgctttcgaccgttaactcctcgctttaccactcaaaggcttggaagttttaacactagatgctccataaataccgacgtcttaactgacattgcaactgatcaagaggttcgggatgatgttgcaactgatgattgcggctgtacaatacctgttcttcatctcaaatctgatattctggaaattgaagcactaaatctgctagccaagggcacgtttgtggacactctcttgacacattgccagtcttatcagaggaggagcagaatattattgctgcaactcctgctcatccagcaaggttatacgctttatatgctagttgcctggctgggtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="71389" stop="67888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71089" g_stop="70787" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70786" i_stop="69516" i_length="1271">
            <donor d_prob="0.986" d_score="0.92"/>
            <acceptor a_prob="0.941" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69515" g_stop="69308" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="499" r_length="207" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69307" i_stop="69203" i_length="105">
            <donor d_prob="0.806" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69202" g_stop="69139" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="563" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69138" i_stop="68218" i_length="921">
            <donor d_prob="0.851" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68217" g_stop="68188" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="593" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E478212" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71089" e_stop="70787"/>
          <exon e_start="69515" e_stop="69308"/>
          <exon e_start="69202" e_stop="69139"/>
          <exon e_start="68217" e_stop="68188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTTCCACATATTCACTGACCACACATC-TCTCCAATCGAATGACCCAAATCCAAACCCAAACCCAAACCCTAGGATCTCGCCGGAGCTGAAGACTGTATGAGTAGTCACCGAGAAGAAATACCGTGCTTCAAAGCAGTGAAGCAGTTTAATAAACAATGGTGGTTGTCGTTTCTCACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGTTCCTCTTACCTCCTCCTCTTCTTTTAGAATACGAACCTTAACTCCTCGCTTTCGATCGTTAACTCCTCGCTTTACCACGCAAAGGTGCGATGCTTTTCCTTGTAAATTGACAATGTAAATGAATGAGTTGCTACTGTGTGATCATGATCTTACTCCTTCAAATGCATTAGTTGAGAACCTGATTAGGTGGATTTATGCATACATTAGTGTCATTATGATCTAATTTCCTGTGGATTGTGAGTAGTGATGTTGATTCTTCTATTGTGTGGTTAGAAAATTTTACTAGTAGGAGAAAGGAAGCAAGATCACCTATAATAACTTACAATTAGATATTTTCCTATCATCATGAAACAGATATACTATGTCATGATAAAGCACACTAAGATTTTATAACAATATTAAAATATTCTTTACTATATTTATATAAATCGCGTCCAAAAAGAATGAATGAAATTGGAAATTGTCAGTACCTGTCGAGTAAGGCTGAGGTATATAGCGAAGTTGTCACGTCTAGAACTGTAGGAGCAGTTCAAACTTGGTATCCCATATTATAGGATGAATGTAAGTCTCATTGACAGTCGGTCTTATTATCATTTGTGATGGTTCAATTGGTGCTAACTGTGAGTTGTTTAATGCAGTTCGAGTGACTTCTTTATCATTGGATTACAGATGAAGTTAAAGCTTTTAAAACTGTTTGGTGCATTTTGGCTTCAGTGCAGTTGAATTGTATCTCTTTAGATAGGAGTATGCTTTCAACGTTATTGCTGGATGAACTAGTGACTGGCTTCTCTACTATGTATAGTTACATCCTAACAGGATTGGGCAGGCTAACTTCATATCACATGATTTTCATAAGTTGGTCTCTTGTTTCTAATCGGAAAACATATCTTGCTTTGCGATCCTACTTGTTTGCAATTTGTATGGTCCAAAGGAAGAGACTTGACTGGTGCGTAATAGTTTTTGTTGTGTGTCACATTCATGCATACAATACATATACATGTACACTCACATATATGTGGGTGCATGTGTTCCCCAGCTATCTTGAAGTTGAAACATAGTGCTGTTATTGCACACATTCATATGTTACAGAATTGAAGCAAGCAGTGGTCTCAACTCTTGGTGTTATTCAGCAAGTGATGAAGTATTATCACTAGAATAAATATTGCATGTTTTCTGGTAGGTTGCTTGTAGTTGGCATTAATGATGTTCAGTTGGTTTTACTAAATAGGAATCTGCTTATGTAGTACTGCAGTCTGCAGAAAATAGCAATGTGATGTGAGAGTAGTTGATTGTTATCTTTATCCTAAAGAATTACGGATTGTCATTGCAATTTAACCGTGTTTCTTTCAATTCAGGCTCGGAAGTCTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGAACATTTGTGGACACTCTCTTGACAACATTGCCAGTAGGAACTTTTATGAATAATTCTGATCAATCATTTCTATTGCCCCTGCTCCCATCTAACTATCGCTACTGCACTTTTGATTTTTCTATTGTTGATGTTGTGCAGGTCTTATCAGAGGAGGAGCAGAACATTATTGCTGCGACTCCTGCTCATCCAGCAGGGTTATACGGTTAGTCTTTTCCCTTAAGTTGAGTGGTGTCTCAAAGTGTAGTGGCAGAAGCTTAACTCATGTCTGAAAGTGCATGAGTTGCTGTCTGCTGTATTCTAAAATGATGATATATACCAAACCTCAACCTAGTTTGGAATTTACGAAAGGATACTTCTGTGAAATGCTAATACCTTGAGTATCTATAGAGGTCCTTTGAAAATTTGGACTATATAAGGTTTGGACATAATATATACTCCCTCTGTCCCAATTTTGCACTTCTCGTTTTTTAAGAGTCAAACAGTTTAAGTTTGGCGGCAATTTATGCATGGAATCTTCTAATTTTTGGAAATGAAATTTATATATTTATAAACTACGTAAAATAAATCACAATAATTAACAATTCAAAATGTTTATAAGATGTCTGAAAAATTTATGGTCATTTTGAATCTCGAAATCTGGAAAGTGTCACACAAAGCAATGTCATTGTACAAGCTGAAGATTTGAGAACTCCAACTTAAATCTTTTATCTTCAGTAGCAGAATATCAGTTGACTATTTTCCTTGTCATTTTTTCTCTAGATGATAGAGCTGGCTGTGCTGTGCTTTTGCTTCTGAGTGATTGTACTCACTCTGTTTCTGCATCTTCTTGATGCTTTTAATGATATCCTTTTTACTTCATAAAAAAAAAGAATATCTAATGTAGACTATGAAAAACATACTTAAAAAATTAACTAGGCTTCAGGCCACTATACTTGATTGGATTGTTCACTGGATTCTTTCTGTTAGAGTGAAGACTACTACCACTCCTCCTTTCCCCTGGCAGGTCAGGGAAGTTTGTTTGATGAGTAGTTTGACTTTGAAAACATGACCAGTTAGTCATTAGTTGCATTATGTCTGTAATGCATCATTTTATAGATTTCTGATGTCAAGTGCATTCAAACAGCTTTATATGCTAGTTGCTTGGCTGGGTATA</genome_strand>
        <mrna_strand>TGAAATTTCCACGAATTCACTGACCACACATCATCTCCAATCGAATGACCCAAAT------------CCAAACCCTAAGATCTCGCCGGAGCTGGAGACTGCATGAGTAGTCACCGAGAAGAATTACCGTGCTTCAAAGCATATAAGCAGTCTAATAAACAATGGTGGCTGTCGTTTCTAACGCTCAGCCTTGGTCCGACTTCCTTACTCTCCGTCAAGCTACTCTTACCTCCTCGTCTTCTTTTATAATACGACCGTTAACTCCTCGCTTTCGACCGTTAACTCCTCGCTTTACCACTCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGAAGTTTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGCGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAATTGAAGCACTAAATCTGCTAGCCAAGGGCACGTTTGTGGACACTCTCTTGAC-ACATTGCCA.........................................................................................................GTCTTATCAGAGGAGGAGCAGAATATTATTGCTGCAACTCCTGCTCATCCAGCAAGGTTATACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATATGCTAGTTGCCTGGCTGGGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479791" ref_strand="+" ref_description="SGN-E479791 [cSTD-11-I16]">
      <seq>tatttctcttgaaatttccacaaattcattgaccacacatctctccaatcgaatgacccaaatccaaaccctaggatctcgccggagctggagactgcatgagtagtcaccgagaagaattaccgtgcttcaaagcagagaagcagtttaataaacaatggtggttgttgtttctaacgctcagccttggtccgccttccttactctccgtcaagctcctcttacctcctcgtcttcttttagaatacgaccgttaactcctcgctttaccactcaaaggcttggaagtcttaacactagatgctccataaataccgacgtcttaactgacattgcaactgatcaagaggttcgggatgatgttgcaactgatgattgtggctgtacaatacctgttcttcatctcaaatctgatattctggaaactgaagcactaaatctgctagccaagggcacgtttgtggacactctcttgacacattgccagtcttatcagaggaggagcagaatattattgctgcaactcctgctcatccagcagggttatacgctttatatgctagttgcctggctgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="71398" stop="67891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71098" g_stop="70820" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70819" i_stop="70404" i_length="416">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.772" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70403" g_stop="70389" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="279" r_length="12" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70388" i_stop="69516" i_length="873">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69515" g_stop="69308" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="486" r_length="207" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69307" i_stop="69203" i_length="105">
            <donor d_prob="0.806" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69202" g_stop="69139" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="550" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69138" i_stop="68218" i_length="921">
            <donor d_prob="0.851" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68217" g_stop="68191" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="577" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E479791" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71098" e_stop="70820"/>
          <exon e_start="70403" e_stop="70389"/>
          <exon e_start="69515" e_stop="69308"/>
          <exon e_start="69202" e_stop="69139"/>
          <exon e_start="68217" e_stop="68191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCCTTTTGAAATTTCCACATATTCACTGACCACACATCTCTCCAATCGAATGACCCAAATCCAAACCCAAACCCAAACCCTAGGATCTCGCCGGAGCTGAAGACTGTATGAGTAGTCACCGAGAAGAAATACCGTGCTTCAAAGCAGTGAAGCAGTTTAATAAACAATGGTGGTTGTCGTTTCTCACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGTTCCTCTTACCTCCTCCTCTTCTTTTAGAATACGAACCTTAACTCCTCGCTTTCGATCGTTAACTCCTCGCTTTACCACGCAAAGGTGCGATGCTTTTCCTTGTAAATTGACAATGTAAATGAATGAGTTGCTACTGTGTGATCATGATCTTACTCCTTCAAATGCATTAGTTGAGAACCTGATTAGGTGGATTTATGCATACATTAGTGTCATTATGATCTAATTTCCTGTGGATTGTGAGTAGTGATGTTGATTCTTCTATTGTGTGGTTAGAAAATTTTACTAGTAGGAGAAAGGAAGCAAGATCACCTATAATAACTTACAATTAGATATTTTCCTATCATCATGAAACAGATATACTATGTCATGATAAAGCACACTAAGATTTTATAACAATATTAAAATATTCTTTACTATATTTATATAAATCGCGTCCAAAAAGAATGAATGAAATTGGAAATTGTCAGTACCTGTCGAGTAAGGCTGAGGTATATAGCGAAGTTGTCACGTCTAGAACTGTAGGAGCAGTTCAAACTTGGTATCCCATATTATAGGATGAATGTAAGTCTCATTGACAGTCGGTCTTATTATCATTTGTGATGGTTCAATTGGTGCTAACTGTGAGTTGTTTAATGCAGTTCGAGTGACTTCTTTATCATTGGATTACAGATGAAGTTAAAGCTTTTAAAACTGTTTGGTGCATTTTGGCTTCAGTGCAGTTGAATTGTATCTCTTTAGATAGGAGTATGCTTTCAACGTTATTGCTGGATGAACTAGTGACTGGCTTCTCTACTATGTATAGTTACATCCTAACAGGATTGGGCAGGCTAACTTCATATCACATGATTTTCATAAGTTGGTCTCTTGTTTCTAATCGGAAAACATATCTTGCTTTGCGATCCTACTTGTTTGCAATTTGTATGGTCCAAAGGAAGAGACTTGACTGGTGCGTAATAGTTTTTGTTGTGTGTCACATTCATGCATACAATACATATACATGTACACTCACATATATGTGGGTGCATGTGTTCCCCAGCTATCTTGAAGTTGAAACATAGTGCTGTTATTGCACACATTCATATGTTACAGAATTGAAGCAAGCAGTGGTCTCAACTCTTGGTGTTATTCAGCAAGTGATGAAGTATTATCACTAGAATAAATATTGCATGTTTTCTGGTAGGTTGCTTGTAGTTGGCATTAATGATGTTCAGTTGGTTTTACTAAATAGGAATCTGCTTATGTAGTACTGCAGTCTGCAGAAAATAGCAATGTGATGTGAGAGTAGTTGATTGTTATCTTTATCCTAAAGAATTACGGATTGTCATTGCAATTTAACCGTGTTTCTTTCAATTCAGGCTCGGAAGTCTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGAACATTTGTGGACACTCTCTTGACAACATTGCCAGTAGGAACTTTTATGAATAATTCTGATCAATCATTTCTATTGCCCCTGCTCCCATCTAACTATCGCTACTGCACTTTTGATTTTTCTATTGTTGATGTTGTGCAGGTCTTATCAGAGGAGGAGCAGAACATTATTGCTGCGACTCCTGCTCATCCAGCAGGGTTATACGGTTAGTCTTTTCCCTTAAGTTGAGTGGTGTCTCAAAGTGTAGTGGCAGAAGCTTAACTCATGTCTGAAAGTGCATGAGTTGCTGTCTGCTGTATTCTAAAATGATGATATATACCAAACCTCAACCTAGTTTGGAATTTACGAAAGGATACTTCTGTGAAATGCTAATACCTTGAGTATCTATAGAGGTCCTTTGAAAATTTGGACTATATAAGGTTTGGACATAATATATACTCCCTCTGTCCCAATTTTGCACTTCTCGTTTTTTAAGAGTCAAACAGTTTAAGTTTGGCGGCAATTTATGCATGGAATCTTCTAATTTTTGGAAATGAAATTTATATATTTATAAACTACGTAAAATAAATCACAATAATTAACAATTCAAAATGTTTATAAGATGTCTGAAAAATTTATGGTCATTTTGAATCTCGAAATCTGGAAAGTGTCACACAAAGCAATGTCATTGTACAAGCTGAAGATTTGAGAACTCCAACTTAAATCTTTTATCTTCAGTAGCAGAATATCAGTTGACTATTTTCCTTGTCATTTTTTCTCTAGATGATAGAGCTGGCTGTGCTGTGCTTTTGCTTCTGAGTGATTGTACTCACTCTGTTTCTGCATCTTCTTGATGCTTTTAATGATATCCTTTTTACTTCATAAAAAAAAAGAATATCTAATGTAGACTATGAAAAACATACTTAAAAAATTAACTAGGCTTCAGGCCACTATACTTGATTGGATTGTTCACTGGATTCTTTCTGTTAGAGTGAAGACTACTACCACTCCTCCTTTCCCCTGGCAGGTCAGGGAAGTTTGTTTGATGAGTAGTTTGACTTTGAAAACATGACCAGTTAGTCATTAGTTGCATTATGTCTGTAATGCATCATTTTATAGATTTCTGATGTCAAGTGCATTCAAACAGCTTTATATGCTAGTTGCTTGGCTGGGT</genome_strand>
        <mrna_strand>TATTTCTCTTGAAATTTCCACAAATTCATTGACCACACATCTCTCCAATCGAATGACCCAAAT------------CCAAACCCTAGGATCTCGCCGGAGCTGGAGACTGCATGAGTAGTCACCGAGAAGAATTACCGTGCTTCAAAGCAGAGAAGCAGTTTAATAAACAATGGTGGTTGTTGTTTCTAACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGCTCCTCTTACCTCCTCGTCTTCTTTTAGAATACGACCGTTAACTCCTCGCTT................................................................................................................................................................................................................................................................................................................................................................................................................................TACCACTC-A--AAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGAAGTCTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGCACGTTTGTGGACACTCTCTTGAC-ACATTGCCA.........................................................................................................GTCTTATCAGAGGAGGAGCAGAATATTATTGCTGCAACTCCTGCTCATCCAGCAGGGTTATACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATATGCTAGTTGCCTGGCTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545823" ref_strand="+" ref_description="SGN-E545823 [TUS-68-N23]">
      <seq>gtccccaaaacaagagagaaaaatggcgttgaaagattttgttcatggacatggataaattcttcttcttcttggatactctctttactgggaatttccctttttttgaactagttcttgattgagcagtaatttgttgatttatatgtttatggttcaatgctattgtcagatggcccattatatcttttgggatttcacctcagccattggtcattcggtttaaaggctgatgatttgatgaagcaatgattaagctccatgcaatatggaaaagaagtaaaacaaaagaaaataattatcaagaatctctgtccatggaaactttgttatgcaagaaactagtgaagcaaacttcttaggtggtgttgcttctgctaagcgtggtggaaggatttgataccgaggctgcaaagaagaggtttctaaagatgtatcttttaaagtcatttgtagtatgcaaaaccaaattctgacataggtttccctggtgccttagaacttgtctctcagtgtaaaaagactggtctcgaagttgctgttgcatttagtgcgtctgaccggaataaagttgacgcaaacttggctgcagcaggtttaccaataacaatggttcatatcttcacggtatatatgcaaacacactattctttggttgataatgtagtttgcaagaacatagaactcggatgaaaatcacaggcttgatgcaattgtatcggctgatgcttttagaacttgaagcctgctccttatattttcttggctgcatcacagattcttgatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="77877" stop="81093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78241" g_stop="78525" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="344" r_length="259" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78526" i_stop="79513" i_length="988">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79514" g_stop="79615" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="446" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79616" i_stop="79718" i_length="103">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.308" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79719" g_stop="79785" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="513" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79786" i_stop="79874" i_length="89">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79875" g_stop="79972" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="611" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79973" i_stop="80507" i_length="535">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80508" g_stop="80600" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="702" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80601" i_stop="80704" i_length="104">
            <donor d_prob="0.544" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80705" g_stop="80793" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="790" r_length="88" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E545823" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78241" e_stop="78525"/>
          <exon e_start="79514" e_stop="79615"/>
          <exon e_start="79719" e_stop="79785"/>
          <exon e_start="79875" e_stop="79972"/>
          <exon e_start="80508" e_stop="80600"/>
          <exon e_start="80705" e_stop="80793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGGGAATTTCCCT-TTTTTGAACTAGTTCTTGATTGAGCAGTAATTTGTTGATTTATATGTTTATGGTTCAATGCTATTGTCAGATGGCCCATTATATCTTTTAGGATTTCACCTCAGCCATTGGTCATTCGGTTTAAAGGCTGATGATTTGATGAAGCAATGATTAAGCTACATGTATGACGTAATGATTAAGCTACATGTAATATATGGAAAAGAAGTAAAACAAAAGAAAATAATTATCAAGAACCTCTGTCCATGGAAACTTTGTTATGCAAGAAACTAGTAACCTTCATCTACCTCATTTGAATATTTGATTTTTGTGAAGTTTCATCTCTTTCCCCTAAAATATTAGGTTGTAGACGTTATCATTTGTATTTTTCCCTTCTTGATTTTGTTTTAACTGTTTGATGTGAAAGATGGGTATGAAATTATCATTGCTACTATTTCAGGGTACTGGTTCTTGAACAATTGTAGCAACACCAACTAGTTCTTGATTTATATGTTTGGGAACCATGAACAATGATGGGTGTTTTTGTTGACTTCGCTAGCTGCTTCAGATATCATGCCTTAAGAAGTCCAGGATAAAGCGTAACGCATCTGTCCAATGGGCAATTTTTTTTTACGTTTCAATGTTATTATCCTCAAAATTGCGCTCATTATATCTTTTTATGGTTTTACCTCAGCCATTGGTCATTCCGTTTAAAGGCATGCTGATAAATTTGATGGCGTAATAATTAAGCTAGCTACATGTAATATGAAAAAGAAGAAAATAAAGAAAAAGAATTATCAAGAATCTCTGTCCAGTCCCCTCCATGGGAACTTTTTTATTTAAGAAACTGGTAAGCTTTATTCACCTCATTCGAATATTTGATTTTTGTGAAGCATCATATCTTTTCTCTCAAAAATAATAGGTTTCGGTTCTGATTGTAGATTTTATCAATTGCTTACTTTCATTCACATAGCTAGCTGAGGCCGTATGTCAATTATGTGAATTGTTCATTCATTCTGTTAAATTAGGGCCCTTCTCCATGAGAAACACTTGTACTCACAAAACCATCGTTTTTGTCTATGAAATTGGATCCAAATAACTGGTTAAAATATTTGATCTTGAGCTAATCCTTTTTTACCTTCAAGTTATAAGAAAATTAGTATGATGTTACTATCCTTTAGGAAATGAATTTTTGATTGTGCAGAACCTTGTTCCTTTGCCATATTTTCTCAATGACCTTTTCTCCTTTTTTCATTTTCCTTTACCCTCGAAATATATCAGGTGAAGCAAACTTCTTAGGTGGTGTTGCTTATGCTAAGCGTGGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTTCTAAAGATGTATCTTTTAAAGGTGATTGTAATTTCATATATTACGAATCTCTACTCTCAAAGCACTGTCCTTTTAGACATGGTAACTGACCCGAGAACTGACAATTTAATTGATAAACTGACAGTCATTCGTAGTATGCAAAACCAAATTCTGGCATAGTTTTCCCTGGTGCCTTAGAACTTGTCTCTCAGGCATGTATAACCTGTGATGGAACTTGACTCTATGTCTTGCTCTTTCTGATTTTGTTACTTTTCATTAATTTGGTGATATGGTACAACAGTATAAAAAGACTGGTCATAAAGTTGCTGTTGCATTTAGTGCGTCAGGCCGGAATAAAGTTGATGCAAACTTCGCTGCAGCAGGTTTACCAATAACAATGTGAGTTAATTTAATGTGCTTTAACTGTGAATAGTTGCTTCTCGTTCCTCATTCAAGAAACAAAGAATTGTACTGAATCAACACCTAGAAAGAACTTTAGTTATTTAAATTATCAGTGTAGATATGTTTTATTGTAGAGCACAACTTGATATCTACTCCTGTGACACTTGGATTTTTAATGTGAGTTAATTTAATGTGCTGGACATAAACTTTTGTTGACATGATGAATCTGTTAGTCATGGAATCAGGCTCTCAGACTCTCAAATTTATGATCTTTTTATATGGTCCTGGGCAAGCCTTCCCTTATGAGCTAGCTTTTGGGGTTGAGTTAGACCTATGGTCCATTTCTTCACATGGTATTAGTGTCAGATCCATCGATCCATGTTATTATGCTTCTCTTTCTCAATATTGATCCCCCACGTTATGTTTTCTAGTCCTGGGCATGCCCCTGGCATGAGGTGGGTGGGTTTCTCCTTATATGATTTTGGGTAATCCTTCCATTATGAGCTAACTTTTGTGGTTGAGTTACGTTCAAGGTTCATATCTTCACGGTATATATGCAAACAAACACTATTCTTTGGTTGATAATGTAGTTTGCAAGAACATAGAACTCGGATGAAAATCACAGGTTCGCAGTGAAATAATTGAAATCTCCCTGCCTTCGTCTCCTTTGTCTTTACTTATCTTTTTATTTATTATTTGACCTCATATCCTTTTTCTTGGATTTAACAGGCTTGATGCAATTGTATCGGCTGATGCTTTTAGAACTTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCATGGATTCTTGATGTTC</genome_strand>
        <mrna_strand>TACTGGGAATTTCCCTTTTTTTGAACTAGTTCTTGATTGAGCAGTAATTTGTTGATTTATATGTTTATGGTTCAATGCTATTGTCAGATGGCCCATTATATCTTTTGGGATTTCACCTCAGCCATTGGTCATTCGGTTTAAAGGCTGATGATTTGATGAAGCAATGATTAAGCT-C--------C------A-T--G---C-----A-ATATGGAAAAGAAGTAAAACAAAAGAAAATAATTATCAAGAATCTCTGTCCATGGAAACTTTGTTATGCAAGAAACTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCAAACTTCTTAGGTGGTGTTGCTTCTGCTAAGCGTGGTGGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTTCTAAAGATGTATCTTTTAAAG.......................................................................................................TCATTTGTAGTATGCAAAACCAAATTCTGACATAGGTTTCCCTGGTGCCTTAGAACTTGTCTCTCAG.........................................................................................TGTAAAAAGACTGGTCTCGAAGTTGCTGTTGCATTTAGTGCGTCTGACCGGAATAAAGTTGACGCAAACTTGGCTGCAGCAGGTTTACCAATAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCATATCTTCACGGTATATATGCAAAC--ACACTATTCTTTGGTTGATAATGTAGTTTGCAAGAACATAGAACTCGGATGAAAATCACAG........................................................................................................GCTTGATGCAATTGTATCGGCTGATGCTTTTAGAAC-TTGAAGCCTGCTCCTTATATTTTCTTGGCTGCATCACAGATTCTTGATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738769" ref_strand="+" ref_description="SGN-E738769 [LC14DF10]">
      <seq>gtaccactaattctggtgctcctgtttttaataacaattcatctcttacggttggtgcaagaggtcctgtgttgcttgaggattaccatttggtggagaaacttgccaactttgacagggaacgtattgcagaacgtgttgttcatgcccgaggtgctagtgccaaagggttttttgaagttactcatgacattgctcaccttacctgtgctgatttccttcgagctcctggtgtacagactccagtcattgtgagattctctactgttattcatgaaaggggtagtcctgaaactctgagggatcctcgtggttttgctgtcaagttttacaccagagagggaaactttgatctggtagggaacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggagggtccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctggaaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtctttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagaacatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggacatcttgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="85423" stop="87341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85725" g_stop="86002" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="341" r_length="278" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86003" i_stop="86533" i_length="531">
            <donor d_prob="0.957" d_score="0.90"/>
            <acceptor a_prob="0.786" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86534" g_stop="87041" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="848" r_length="507" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E738769" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85725" e_stop="86002"/>
          <exon e_start="86534" e_stop="87041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCGTGTTGCTTAAGGATTACCATTTGGTGGAGAAACTTGCCAACTTTGACCAGGAATGTATCATGGAATGTGTTGTTCATGCCCGAGGTGCTAGTGCCAAAGGGTTTTTTGAAGTTACTCATGACATTGCTCACCTTACCCGTGCTGATTTCCTTCGCGCTCCCGCCATCCAGACTCTATTCATTGTGAGATTCTTTACTGTTATTCAAGAGAAGGGGTAGTCCTGAAACTTTGAGGGACCCTCGT-GTTTTGCTGTCAAGTTCTACACCAGAGAGGTAGGCCAAACATCAATTTGACGAGTTACAGCTACTATAGTTCTGTACCTTCGTACTTCAATTTCCATATACAGACTGGAGTATGCATGTTTTAGTGATTCCCTTATTAGCACACGGCTTAATAATAAGTACCTCAATTGCATGTTGGCTGGACTGCTTCATAGACAATGTTATGTTGCAATTCAAAAAAACGATATGAAGTTCATATAATTTTTTTCTTAGTGTATCTGCATCCCATAGGGATCCATCTTTAAGTACCCTGAATATGGGTCCATGCGTTTAGTAACTTTTCTAGTAGGTTATGAAATATGAAGCGTTGCTTAACATCATATTAGAGACTATCGGGCCCTGTGACATTCAGTAACTTTCAGTGAATTTTGTGCTGCCTAATTTTCATGAATCACACCCGTTTTTTCGTATACTTTTTGGGAAATGGTCTCATTGCTTTATAAATATGCATGTGTTTGTGATTTGGTTAGTTGCATTTGAAGTTAATCCTTAATTTCTGCTCAATTTGCAATATACCATCAGAGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCT</genome_strand>
        <mrna_strand>GTCCTGTGTTGCTTGAGGATTACCATTTGGTGGAGAAACTTGCCAACTTTGACAGGGAACGTATTGCAGAACGTGTTGTTCATGCCCGAGGTGCTAGTGCCAAAGGGTTTTTTGAAGTTACTCATGACATTGCTCACCTTACCTGTGCTGATTTCCTTCGAGCTCCTGGTGTACAGACTCCAGTCATTGTGAGATTCTCTACTGTTATTCATGA-AAGGGGTAGTCCTGAAACTCTGAGGGATCCTCGTGGTTTTGCTGTCAAGTTTTACACCAGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTTTGATCTGGTAGGGAACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGGTCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGAAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCTTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGAACATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGACATCTTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467110" ref_strand="+" ref_description="SGN-E467110 [cSTB-42-G11]">
      <seq>cgagggttggtgcaagaggtcccgtgttgcttgaggattaccatttggtggagaaacttgccaactttgacagggaacgtatcgcggaacgtgttgttcatgcccgaggtgctagtgccaaagggttttttgaagttactcatgacattgctcaccttacctgtgctgatttccttcgagctcccggtgtccagactccagtcattgtgagattctctactgttattcatgagaggggtagtcctgaaactctgagggatcctcgtggttttgctgtcaagttctacaccagagagggaaattttgatctggtagggaacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggagggtccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacaaggctgggaaatcaacttatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="85423" stop="87108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85725" g_stop="86002" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="296" r_length="278" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86003" i_stop="86533" i_length="531">
            <donor d_prob="0.957" d_score="0.92"/>
            <acceptor a_prob="0.786" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86534" g_stop="86808" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="572" r_length="276" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E467110" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85725" e_stop="86002"/>
          <exon e_start="86534" e_stop="86808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCGTGTTGCTTAAGGATTACCATTTGGTGGAGAAACTTGCCAACTTTGACCAGGAATGTATCATGGAATGTGTTGTTCATGCCCGAGGTGCTAGTGCCAAAGGGTTTTTTGAAGTTACTCATGACATTGCTCACCTTACCCGTGCTGATTTCCTTCGCGCTCCCGCCATCCAGACTCTATTCATTGTGAGATTCTTTACTGTTATTCAAGAGAAGGGGTAGTCCTGAAACTTTGAGGGACCCTCGT-GTTTTGCTGTCAAGTTCTACACCAGAGAGGTAGGCCAAACATCAATTTGACGAGTTACAGCTACTATAGTTCTGTACCTTCGTACTTCAATTTCCATATACAGACTGGAGTATGCATGTTTTAGTGATTCCCTTATTAGCACACGGCTTAATAATAAGTACCTCAATTGCATGTTGGCTGGACTGCTTCATAGACAATGTTATGTTGCAATTCAAAAAAACGATATGAAGTTCATATAATTTTTTTCTTAGTGTATCTGCATCCCATAGGGATCCATCTTTAAGTACCCTGAATATGGGTCCATGCGTTTAGTAACTTTTCTAGTAGGTTATGAAATATGAAGCGTTGCTTAACATCATATTAGAGACTATCGGGCCCTGTGACATTCAGTAACTTTCAGTGAATTTTGTGCTGCCTAATTTTCATGAATCACACCCGTTTTTTCGTATACTTTTTGGGAAATGGTCTCATTGCTTTATAAATATGCATGTGTTTGTGATTTGGTTAGTTGCATTTGAAGTTAATCCTTAATTTCTGCTCAATTTGCAATATACCATCAGAGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTG</genome_strand>
        <mrna_strand>GTCCCGTGTTGCTTGAGGATTACCATTTGGTGGAGAAACTTGCCAACTTTGACAGGGAACGTATCGCGGAACGTGTTGTTCATGCCCGAGGTGCTAGTGCCAAAGGGTTTTTTGAAGTTACTCATGACATTGCTCACCTTACCTGTGCTGATTTCCTTCGAGCTCCCGGTGTCCAGACTCCAGTCATTGTGAGATTCTCTACTGTTATTCATGAG-AGGGGTAGTCCTGAAACTCTGAGGGATCCTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATTTTGATCTGGTAGGGAACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGGTCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAAGGCTGGGAAATCAACTTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475950" ref_strand="+" ref_description="SGN-E475950 [cSTB-42-H12]">
      <seq>gttggtgcaagaggtcccgtgttgcttgaggattaccatttggtggagaaacttgccaactttgacagggaacgtatcgcggaacgtgttgttcatgcccgaggtgctagtgccaaagggttttttgaagttactcatgacattgctcaccttacctgtgctgatttccttcgagctcccggtgtccagactccagtcattgtgagattctctactgttattcatgagaggggtagtcctgaaactctgagggatcctcgtggttttgctgtcaagttctacaccagagagggaaattttgatctggtagggaacaacttccccgtctttttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaattctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="85423" stop="86929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85725" g_stop="86002" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="291" r_length="278" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86003" i_stop="86533" i_length="531">
            <donor d_prob="0.957" d_score="0.92"/>
            <acceptor a_prob="0.786" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86534" g_stop="86631" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E475950" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85725" e_stop="86002"/>
          <exon e_start="86534" e_stop="86631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCGTGTTGCTTAAGGATTACCATTTGGTGGAGAAACTTGCCAACTTTGACCAGGAATGTATCATGGAATGTGTTGTTCATGCCCGAGGTGCTAGTGCCAAAGGGTTTTTTGAAGTTACTCATGACATTGCTCACCTTACCCGTGCTGATTTCCTTCGCGCTCCCGCCATCCAGACTCTATTCATTGTGAGATTCTTTACTGTTATTCAAGAGAAGGGGTAGTCCTGAAACTTTGAGGGACCCTCGT-GTTTTGCTGTCAAGTTCTACACCAGAGAGGTAGGCCAAACATCAATTTGACGAGTTACAGCTACTATAGTTCTGTACCTTCGTACTTCAATTTCCATATACAGACTGGAGTATGCATGTTTTAGTGATTCCCTTATTAGCACACGGCTTAATAATAAGTACCTCAATTGCATGTTGGCTGGACTGCTTCATAGACAATGTTATGTTGCAATTCAAAAAAACGATATGAAGTTCATATAATTTTTTTCTTAGTGTATCTGCATCCCATAGGGATCCATCTTTAAGTACCCTGAATATGGGTCCATGCGTTTAGTAACTTTTCTAGTAGGTTATGAAATATGAAGCGTTGCTTAACATCATATTAGAGACTATCGGGCCCTGTGACATTCAGTAACTTTCAGTGAATTTTGTGCTGCCTAATTTTCATGAATCACACCCGTTTTTTCGTATACTTTTTGGGAAATGGTCTCATTGCTTTATAAATATGCATGTGTTTGTGATTTGGTTAGTTGCATTTGAAGTTAATCCTTAATTTCTGCTCAATTTGCAATATACCATCAGAGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGG</genome_strand>
        <mrna_strand>GTCCCGTGTTGCTTGAGGATTACCATTTGGTGGAGAAACTTGCCAACTTTGACAGGGAACGTATCGCGGAACGTGTTGTTCATGCCCGAGGTGCTAGTGCCAAAGGGTTTTTTGAAGTTACTCATGACATTGCTCACCTTACCTGTGCTGATTTCCTTCGAGCTCCCGGTGTCCAGACTCCAGTCATTGTGAGATTCTCTACTGTTATTCATGAG-AGGGGTAGTCCTGAAACTCTGAGGGATCCTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATTTTGATCTGGTAGGGAACAACTTCCCCGTCTTTTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAATTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468653" ref_strand="+" ref_description="SGN-E468653 [cSTB-5-B3]">
      <seq>gaaacttgccaactttgacagggaacgtatcgcggaacgtgtggttcatgcccgaggtgctagtgccaaagggttttttgaagttactcatgacattgctcaccttacctgtgctgatttccttcgagctcccggtgtccagactccagtcattgtgagattctctactgttattcatgagaggggtagtcctgaaactctgagggatcctcgtggttttgctgtcaagttctacaccagagagggaaattttgatctggtagggaacaacttccccgtcttcttcatgcgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggacgatccttgattttctctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="85459" stop="87096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85759" g_stop="86002" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86003" i_stop="86533" i_length="531">
            <donor d_prob="0.957" d_score="0.92"/>
            <acceptor a_prob="0.786" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86534" g_stop="86796" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="508" r_length="264" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E468653" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85759" e_stop="86002"/>
          <exon e_start="86534" e_stop="86796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTGCCAACTTTGACCAGGAATGTATCATGGAATGTGTTGTTCATGCCCGAGGTGCTAGTGCCAAAGGGTTTTTTGAAGTTACTCATGACATTGCTCACCTTACCCGTGCTGATTTCCTTCGCGCTCCCGCCATCCAGACTCTATTCATTGTGAGATTCTTTACTGTTATTCAAGAGAAGGGGTAGTCCTGAAACTTTGAGGGACCCTCGT-GTTTTGCTGTCAAGTTCTACACCAGAGAGGTAGGCCAAACATCAATTTGACGAGTTACAGCTACTATAGTTCTGTACCTTCGTACTTCAATTTCCATATACAGACTGGAGTATGCATGTTTTAGTGATTCCCTTATTAGCACACGGCTTAATAATAAGTACCTCAATTGCATGTTGGCTGGACTGCTTCATAGACAATGTTATGTTGCAATTCAAAAAAACGATATGAAGTTCATATAATTTTTTTCTTAGTGTATCTGCATCCCATAGGGATCCATCTTTAAGTACCCTGAATATGGGTCCATGCGTTTAGTAACTTTTCTAGTAGGTTATGAAATATGAAGCGTTGCTTAACATCATATTAGAGACTATCGGGCCCTGTGACATTCAGTAACTTTCAGTGAATTTTGTGCTGCCTAATTTTCATGAATCACACCCGTTTTTTCGTATACTTTTTGGGAAATGGTCTCATTGCTTTATAAATATGCATGTGTTTGTGATTTGGTTAGTTGCATTTGAAGTTAATCCTTAATTTCTGCTCAATTTGCAATATACCATCAGAGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGAATTTCTC--TCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAA</genome_strand>
        <mrna_strand>GAAACTTGCCAACTTTGACAGGGAACGTATCGCGGAACGTGTGGTTCATGCCCGAGGTGCTAGTGCCAAAGGGTTTTTTGAAGTTACTCATGACATTGCTCACCTTACCTGTGCTGATTTCCTTCGAGCTCCCGGTGTCCAGACTCCAGTCATTGTGAGATTCTCTACTGTTATTCATGAG-AGGGGTAGTCCTGAAACTCTGAGGGATCCTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATTTTGATCTGGTAGGGAACAACTTCCCCGTCTTCTTCATGCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGACGATCCTTGATTTTCTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616935" ref_strand="+" ref_description="SGN-E616935 [90407]">
      <seq>gctagtgccaaagggttttttgaagttactcatgacattgctcaccttacctgtgctgatttccttcgagctcccggtgtccagactccagtcattgtgagattctctactgttattcatgagaggggtagtcctgaaactctgagggatcctcgtggttttgctgtcaagttctacaccagagagggaaattttgatctggtagggaacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggaggatccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtatttcacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctgggaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtccttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagatcatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggatatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataactttcttaatgagaacgagcagctagctttctgcccttctattgtggtcccaggggttattactcagatgataagatgtttcaaactcgtattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="85517" stop="87482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85817" g_stop="86002" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86003" i_stop="86533" i_length="531">
            <donor d_prob="0.957" d_score="0.92"/>
            <acceptor a_prob="0.786" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86534" g_stop="87182" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="833" r_length="647" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E616935" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85817" e_stop="86002"/>
          <exon e_start="86534" e_stop="87182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGTGCCAAAGGGTTTTTTGAAGTTACTCATGACATTGCTCACCTTACCCGTGCTGATTTCCTTCGCGCTCCCGCCATCCAGACTCTATTCATTGTGAGATTCTTTACTGTTATTCAAGAGAAGGGGTAGTCCTGAAACTTTGAGGGACCCTCGT-GTTTTGCTGTCAAGTTCTACACCAGAGAGGTAGGCCAAACATCAATTTGACGAGTTACAGCTACTATAGTTCTGTACCTTCGTACTTCAATTTCCATATACAGACTGGAGTATGCATGTTTTAGTGATTCCCTTATTAGCACACGGCTTAATAATAAGTACCTCAATTGCATGTTGGCTGGACTGCTTCATAGACAATGTTATGTTGCAATTCAAAAAAACGATATGAAGTTCATATAATTTTTTTCTTAGTGTATCTGCATCCCATAGGGATCCATCTTTAAGTACCCTGAATATGGGTCCATGCGTTTAGTAACTTTTCTAGTAGGTTATGAAATATGAAGCGTTGCTTAACATCATATTAGAGACTATCGGGCCCTGTGACATTCAGTAACTTTCAGTGAATTTTGTGCTGCCTAATTTTCATGAATCACACCCGTTTTTTCGTATACTTTTTGGGAAATGGTCTCATTGCTTTATAAATATGCATGTGTTTGTGATTTGGTTAGTTGCATTTGAAGTTAATCCTTAATTTCTGCTCAATTTGCAATATACCATCAGAGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTC</genome_strand>
        <mrna_strand>GCTAGTGCCAAAGGGTTTTTTGAAGTTACTCATGACATTGCTCACCTTACCTGTGCTGATTTCCTTCGAGCTCCCGGTGTCCAGACTCCAGTCATTGTGAGATTCTCTACTGTTATTCATGAG-AGGGGTAGTCCTGAAACTCTGAGGGATCCTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATTTTGATCTGGTAGGGAACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGATCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTTCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCCTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGATCATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGATATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTTCTTAATGAGAACGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTCCCAGGGG-TTATTACTCAGATGATAAGATGTTTCAAACTCGTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467626" ref_strand="+" ref_description="SGN-E467626 [cSTB-1-I10]">
      <seq>aaagggttttttgaagttactcatgacattgctcaccttacctgtgctgatttccttcgagctcccggtgtccagactccagtcattgtgagattctctactgttattcatgaaaggggtagtcctgaaactctgagggatcctcgtggttttgctgtcaagttctacaccagagagggaaattttgatctggtagggaacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggaggatccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctgggaaatcaacttatgtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="85526" stop="87111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85826" g_stop="86002" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86003" i_stop="86533" i_length="531">
            <donor d_prob="0.957" d_score="0.92"/>
            <acceptor a_prob="0.786" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86534" g_stop="86811" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="456" r_length="279" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E467626" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85826" e_stop="86002"/>
          <exon e_start="86534" e_stop="86811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGTTTTTTGAAGTTACTCATGACATTGCTCACCTTACCCGTGCTGATTTCCTTCGCGCTCCCGCCATCCAGACTCTATTCATTGTGAGATTCTTTACTGTTATTCAAGAGAAGGGGTAGTCCTGAAACTTTGAGGGACCCTCGT-GTTTTGCTGTCAAGTTCTACACCAGAGAGGTAGGCCAAACATCAATTTGACGAGTTACAGCTACTATAGTTCTGTACCTTCGTACTTCAATTTCCATATACAGACTGGAGTATGCATGTTTTAGTGATTCCCTTATTAGCACACGGCTTAATAATAAGTACCTCAATTGCATGTTGGCTGGACTGCTTCATAGACAATGTTATGTTGCAATTCAAAAAAACGATATGAAGTTCATATAATTTTTTTCTTAGTGTATCTGCATCCCATAGGGATCCATCTTTAAGTACCCTGAATATGGGTCCATGCGTTTAGTAACTTTTCTAGTAGGTTATGAAATATGAAGCGTTGCTTAACATCATATTAGAGACTATCGGGCCCTGTGACATTCAGTAACTTTCAGTGAATTTTGTGCTGCCTAATTTTCATGAATCACACCCGTTTTTTCGTATACTTTTTGGGAAATGGTCTCATTGCTTTATAAATATGCATGTGTTTGTGATTTGGTTAGTTGCATTTGAAGTTAATCCTTAATTTCTGCTCAATTTGCAATATACCATCAGAGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAG</genome_strand>
        <mrna_strand>AAAGGGTTTTTTGAAGTTACTCATGACATTGCTCACCTTACCTGTGCTGATTTCCTTCGAGCTCCCGGTGTCCAGACTCCAGTCATTGTGAGATTCTCTACTGTTATTCATGA-AAGGGGTAGTCCTGAAACTCTGAGGGATCCTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATTTTGATCTGGTAGGGAACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGATCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473690" ref_strand="+" ref_description="SGN-E473690 [cSTB-33-E12]">
      <seq>cgagggcctcaccttacctgtgctgatttccttcgagctcccggtgtccagactccagtcattgtgagattctctactgttattcatgagaggggtagtcctgaaactctgagggatcctcgtggttttgctgtcaagttctacaccagagagggaaattttgatctggtagggaacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggagggtccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctgggaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtccttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagatcatgaagacaaatttgactttgatccacttgatgtgacaaaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="85557" stop="87321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85849" g_stop="86002" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86003" i_stop="86533" i_length="531">
            <donor d_prob="0.957" d_score="0.92"/>
            <acceptor a_prob="0.786" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86534" g_stop="87021" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="640" r_length="487" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E473690" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85849" e_stop="86002"/>
          <exon e_start="86534" e_stop="87021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATTGCTCACCTTACCCGTGCTGATTTCCTTCGCGCTCCCGCCATCCAGACTCTATTCATTGTGAGATTCTTTACTGTTATTCAAGAGAAGGGGTAGTCCTGAAACTTTGAGGGACCCTCGT-GTTTTGCTGTCAAGTTCTACACCAGAGAGGTAGGCCAAACATCAATTTGACGAGTTACAGCTACTATAGTTCTGTACCTTCGTACTTCAATTTCCATATACAGACTGGAGTATGCATGTTTTAGTGATTCCCTTATTAGCACACGGCTTAATAATAAGTACCTCAATTGCATGTTGGCTGGACTGCTTCATAGACAATGTTATGTTGCAATTCAAAAAAACGATATGAAGTTCATATAATTTTTTTCTTAGTGTATCTGCATCCCATAGGGATCCATCTTTAAGTACCCTGAATATGGGTCCATGCGTTTAGTAACTTTTCTAGTAGGTTATGAAATATGAAGCGTTGCTTAACATCATATTAGAGACTATCGGGCCCTGTGACATTCAGTAACTTTCAGTGAATTTTGTGCTGCCTAATTTTCATGAATCACACCCGTTTTTTCGTATACTTTTTGGGAAATGGTCTCATTGCTTTATAAATATGCATGTGTTTGTGATTTGGTTAGTTGCATTTGAAGTTAATCCTTAATTTCTGCTCAATTTGCAATATACCATCAGAGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTT</genome_strand>
        <mrna_strand>CGAG-GGCCTCACCTTACCTGTGCTGATTTCCTTCGAGCTCCCGGTGTCCAGACTCCAGTCATTGTGAGATTCTCTACTGTTATTCATGAG-AGGGGTAGTCCTGAAACTCTGAGGGATCCTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATTTTGATCTGGTAGGGAACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGGTCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCCTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGATCATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396206" ref_strand="+" ref_description="SGN-E396206 [TUS-24-N20]">
      <seq>ctcaccttacccgtgctgatttccttcgcgctcccgccatccagactctattcattgtgagattctttactgttattcaagagaaggggtagtcctgaaactttgagggaccctcgtgttttgctgtcatgttctacaccagacagagaagctttgatctggtagggaacaacttccccatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="85557" stop="86872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85857" g_stop="86002" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86003" i_stop="86533" i_length="531">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.786" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86534" g_stop="86572" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="185" r_length="39" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E396206" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85857" e_stop="86002"/>
          <exon e_start="86534" e_stop="86572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACCTTACCCGTGCTGATTTCCTTCGCGCTCCCGCCATCCAGACTCTATTCATTGTGAGATTCTTTACTGTTATTCAAGAGAAGGGGTAGTCCTGAAACTTTGAGGGACCCTCGTGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAGGCCAAACATCAATTTGACGAGTTACAGCTACTATAGTTCTGTACCTTCGTACTTCAATTTCCATATACAGACTGGAGTATGCATGTTTTAGTGATTCCCTTATTAGCACACGGCTTAATAATAAGTACCTCAATTGCATGTTGGCTGGACTGCTTCATAGACAATGTTATGTTGCAATTCAAAAAAACGATATGAAGTTCATATAATTTTTTTCTTAGTGTATCTGCATCCCATAGGGATCCATCTTTAAGTACCCTGAATATGGGTCCATGCGTTTAGTAACTTTTCTAGTAGGTTATGAAATATGAAGCGTTGCTTAACATCATATTAGAGACTATCGGGCCCTGTGACATTCAGTAACTTTCAGTGAATTTTGTGCTGCCTAATTTTCATGAATCACACCCGTTTTTTCGTATACTTTTTGGGAAATGGTCTCATTGCTTTATAAATATGCATGTGTTTGTGATTTGGTTAGTTGCATTTGAAGTTAATCCTTAATTTCTGCTCAATTTGCAATATACCATCAGAGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTC</genome_strand>
        <mrna_strand>CTCACCTTACCCGTGCTGATTTCCTTCGCGCTCCCGCCATCCAGACTCTATTCATTGTGAGATTCTTTACTGTTATTCAAGAGAAGGGGTAGTCCTGAAACTTTGAGGGACCCTCGTGTTTTGCTGTCATGTTCTACACCAGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCTTTGATCTGGTAGGGAACAACTTCCCCATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448978" ref_strand="+" ref_description="SGN-E448978 [cSTS-5-C5]">
      <seq>gtccagactccagtcattgtgagattctctactgttattcatgagaggggtagtcctgaaactctgagggatcctcgtggttttgctgtcaagttctacaccagagagggaaattttgatctggtagggaacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggagggtccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctgggaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtccttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcangacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagatcatgaagacaaatttgactttgatccacttgatgtgacaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="85596" stop="87319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85895" g_stop="86002" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86003" i_stop="86533" i_length="531">
            <donor d_prob="0.957" d_score="0.92"/>
            <acceptor a_prob="0.786" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86534" g_stop="87019" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="593" r_length="485" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E448978" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85895" e_stop="86002"/>
          <exon e_start="86534" e_stop="87019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAGACTCTATTCATTGTGAGATTCTTTACTGTTATTCAAGAGAAGGGGTAGTCCTGAAACTTTGAGGGACCCTCGT-GTTTTGCTGTCAAGTTCTACACCAGAGAGGTAGGCCAAACATCAATTTGACGAGTTACAGCTACTATAGTTCTGTACCTTCGTACTTCAATTTCCATATACAGACTGGAGTATGCATGTTTTAGTGATTCCCTTATTAGCACACGGCTTAATAATAAGTACCTCAATTGCATGTTGGCTGGACTGCTTCATAGACAATGTTATGTTGCAATTCAAAAAAACGATATGAAGTTCATATAATTTTTTTCTTAGTGTATCTGCATCCCATAGGGATCCATCTTTAAGTACCCTGAATATGGGTCCATGCGTTTAGTAACTTTTCTAGTAGGTTATGAAATATGAAGCGTTGCTTAACATCATATTAGAGACTATCGGGCCCTGTGACATTCAGTAACTTTCAGTGAATTTTGTGCTGCCTAATTTTCATGAATCACACCCGTTTTTTCGTATACTTTTTGGGAAATGGTCTCATTGCTTTATAAATATGCATGTGTTTGTGATTTGGTTAGTTGCATTTGAAGTTAATCCTTAATTTCTGCTCAATTTGCAATATACCATCAGAGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAAC</genome_strand>
        <mrna_strand>GTCCAGACTCCAGTCATTGTGAGATTCTCTACTGTTATTCATGAG-AGGGGTAGTCCTGAAACTCTGAGGGATCCTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATTTTGATCTGGTAGGGAACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGGTCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCCTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCANGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGATCATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311576" ref_strand="+" ref_description="SGN-E311576 [cTOA-6-K11]">
      <seq>tgagattctctactgttatttatgaaaggggtagtcctgaaactctgagggatcctcgtggttttgctgtcaagttttacaccagagagggaaactttgatctggtagggaacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggagggtccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctggaaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtctttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="85614" stop="87217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85914" g_stop="86002" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86003" i_stop="86533" i_length="531">
            <donor d_prob="0.957" d_score="0.90"/>
            <acceptor a_prob="0.786" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86534" g_stop="86917" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="472" r_length="383" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E311576" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85914" e_stop="86002"/>
          <exon e_start="86534" e_stop="86917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATTCTTTACTGTTATTCAAGAGAAGGGGTAGTCCTGAAACTTTGAGGGACCCTCGT-GTTTTGCTGTCAAGTTCTACACCAGAGAGGTAGGCCAAACATCAATTTGACGAGTTACAGCTACTATAGTTCTGTACCTTCGTACTTCAATTTCCATATACAGACTGGAGTATGCATGTTTTAGTGATTCCCTTATTAGCACACGGCTTAATAATAAGTACCTCAATTGCATGTTGGCTGGACTGCTTCATAGACAATGTTATGTTGCAATTCAAAAAAACGATATGAAGTTCATATAATTTTTTTCTTAGTGTATCTGCATCCCATAGGGATCCATCTTTAAGTACCCTGAATATGGGTCCATGCGTTTAGTAACTTTTCTAGTAGGTTATGAAATATGAAGCGTTGCTTAACATCATATTAGAGACTATCGGGCCCTGTGACATTCAGTAACTTTCAGTGAATTTTGTGCTGCCTAATTTTCATGAATCACACCCGTTTTTTCGTATACTTTTTGGGAAATGGTCTCATTGCTTTATAAATATGCATGTGTTTGTGATTTGGTTAGTTGCATTTGAAGTTAATCCTTAATTTCTGCTCAATTTGCAATATACCATCAGAGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTC</genome_strand>
        <mrna_strand>TGAGATTCTCTACTGTTATTTATGA-AAGGGGTAGTCCTGAAACTCTGAGGGATCCTCGTGGTTTTGCTGTCAAGTTTTACACCAGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTTTGATCTGGTAGGGAACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGGTCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGAAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCTTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735980" ref_strand="+" ref_description="SGN-E735980 [LC03DF09]">
      <seq>cgttctactgttattcatgaaaggggtagtcctgaaactctgagggatcctcgtggttttgctgtcaagttttacaccagagagggaaactttgatctggtagggaacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggagggtccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctggaaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtctttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagaacatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggacatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttctttaatgagaatgagcagctagctttctgcccttctattgtggttccaggtgtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccagaggtatcgacttggaccaaactatttgcaacttcctgctaatgctccaaagtgtgctcatcacaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="85619" stop="87567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85919" g_stop="86002" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.869"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86003" i_stop="86533" i_length="531">
            <donor d_prob="0.957" d_score="0.90"/>
            <acceptor a_prob="0.786" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86534" g_stop="87267" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="818" r_length="734" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E735980" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85919" e_stop="86002"/>
          <exon e_start="86534" e_stop="87267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTACTGTTATTCAAGAGAAGGGGTAGTCCTGAAACTTTGAGGGACCCTCGT-GTTTTGCTGTCAAGTTCTACACCAGAGAGGTAGGCCAAACATCAATTTGACGAGTTACAGCTACTATAGTTCTGTACCTTCGTACTTCAATTTCCATATACAGACTGGAGTATGCATGTTTTAGTGATTCCCTTATTAGCACACGGCTTAATAATAAGTACCTCAATTGCATGTTGGCTGGACTGCTTCATAGACAATGTTATGTTGCAATTCAAAAAAACGATATGAAGTTCATATAATTTTTTTCTTAGTGTATCTGCATCCCATAGGGATCCATCTTTAAGTACCCTGAATATGGGTCCATGCGTTTAGTAACTTTTCTAGTAGGTTATGAAATATGAAGCGTTGCTTAACATCATATTAGAGACTATCGGGCCCTGTGACATTCAGTAACTTTCAGTGAATTTTGTGCTGCCTAATTTTCATGAATCACACCCGTTTTTTCGTATACTTTTTGGGAAATGGTCTCATTGCTTTATAAATATGCATGTGTTTGTGATTTGGTTAGTTGCATTTGAAGTTAATCCTTAATTTCTGCTCAATTTGCAATATACCATCAGAGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTA-TTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAGCAA</genome_strand>
        <mrna_strand>CGTTCTACTGTTATTCATGA-AAGGGGTAGTCCTGAAACTCTGAGGGATCCTCGTGGTTTTGCTGTCAAGTTTTACACCAGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTTTGATCTGGTAGGGAACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGGTCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGAAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCTTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGAACATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGACATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTCTTTAATGAGAATGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGTGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCAGAGGTATCGACTTGGACCAAACTATTTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464916" ref_strand="+" ref_description="SGN-E464916 [cPRO-19-D7]">
      <seq>ctctactgttattcatgagaggggtagtcctgaaactctgagggatcctcgtggttttgctgtcaagttctacaccagagagggaaattttgatctggtagggaacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggagggtccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctgggaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtccttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagatcatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="85621" stop="87324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85921" g_stop="86002" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86003" i_stop="86533" i_length="531">
            <donor d_prob="0.957" d_score="0.92"/>
            <acceptor a_prob="0.786" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86534" g_stop="87024" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="572" r_length="490" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E464916" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85921" e_stop="86002"/>
          <exon e_start="86534" e_stop="87024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACTGTTATTCAAGAGAAGGGGTAGTCCTGAAACTTTGAGGGACCCTCGT-GTTTTGCTGTCAAGTTCTACACCAGAGAGGTAGGCCAAACATCAATTTGACGAGTTACAGCTACTATAGTTCTGTACCTTCGTACTTCAATTTCCATATACAGACTGGAGTATGCATGTTTTAGTGATTCCCTTATTAGCACACGGCTTAATAATAAGTACCTCAATTGCATGTTGGCTGGACTGCTTCATAGACAATGTTATGTTGCAATTCAAAAAAACGATATGAAGTTCATATAATTTTTTTCTTAGTGTATCTGCATCCCATAGGGATCCATCTTTAAGTACCCTGAATATGGGTCCATGCGTTTAGTAACTTTTCTAGTAGGTTATGAAATATGAAGCGTTGCTTAACATCATATTAGAGACTATCGGGCCCTGTGACATTCAGTAACTTTCAGTGAATTTTGTGCTGCCTAATTTTCATGAATCACACCCGTTTTTTCGTATACTTTTTGGGAAATGGTCTCATTGCTTTATAAATATGCATGTGTTTGTGATTTGGTTAGTTGCATTTGAAGTTAATCCTTAATTTCTGCTCAATTTGCAATATACCATCAGAGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGC</genome_strand>
        <mrna_strand>CTCTACTGTTATTCATGAG-AGGGGTAGTCCTGAAACTCTGAGGGATCCTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATTTTGATCTGGTAGGGAACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGGTCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCCTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGATCATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726925" ref_strand="+" ref_description="SGN-E726925 [LA13AH05]">
      <seq>ctgaaactctgagggatcctcgtggttttgctgtcaagttttacaccagagagggaaactttgatctggtagggaacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggagggtccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctggaaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtctttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagaacatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggacatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttctttaatgagaatgagcagctagctttctgcccttctattgtggttccaggtgtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccagaggtatcgacttggaccaaactatttgcaacttcctgctaatgctcccaagtgtgctcatcacaacaatcactatgatggctctatgaattttatgcacagggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="85651" stop="87606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85951" g_stop="86002" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86003" i_stop="86533" i_length="531">
            <donor d_prob="0.957" d_score="0.90"/>
            <acceptor a_prob="0.786" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86534" g_stop="87306" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="826" r_length="773" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E726925" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85951" e_stop="86002"/>
          <exon e_start="86534" e_stop="87306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAACTTTGAGGGACCCTCGT-GTTTTGCTGTCAAGTTCTACACCAGAGAGGTAGGCCAAACATCAATTTGACGAGTTACAGCTACTATAGTTCTGTACCTTCGTACTTCAATTTCCATATACAGACTGGAGTATGCATGTTTTAGTGATTCCCTTATTAGCACACGGCTTAATAATAAGTACCTCAATTGCATGTTGGCTGGACTGCTTCATAGACAATGTTATGTTGCAATTCAAAAAAACGATATGAAGTTCATATAATTTTTTTCTTAGTGTATCTGCATCCCATAGGGATCCATCTTTAAGTACCCTGAATATGGGTCCATGCGTTTAGTAACTTTTCTAGTAGGTTATGAAATATGAAGCGTTGCTTAACATCATATTAGAGACTATCGGGCCCTGTGACATTCAGTAACTTTCAGTGAATTTTGTGCTGCCTAATTTTCATGAATCACACCCGTTTTTTCGTATACTTTTTGGGAAATGGTCTCATTGCTTTATAAATATGCATGTGTTTGTGATTTGGTTAGTTGCATTTGAAGTTAATCCTTAATTTCTGCTCAATTTGCAATATACCATCAGAGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTA-TTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAGCAATCACTATGATGGCTCTATCAATTTTATGCACAGGGATGA</genome_strand>
        <mrna_strand>CTGAAACTCTGAGGGATCCTCGTGGTTTTGCTGTCAAGTTTTACACCAGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTTTGATCTGGTAGGGAACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGGTCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGAAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCTTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGAACATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGACATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTCTTTAATGAGAATGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGTGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCAGAGGTATCGACTTGGACCAAACTATTTGCAACTTCCTGCTAATGCTCCCAAGTGTGCTCATCACAACAATCACTATGATGGCTCTATGAATTTTATGCACAGGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465495" ref_strand="+" ref_description="SGN-E465495 [cPRO-21-C22]">
      <seq>gtcaagttctacaccagagagggaaattttgatctggtagggaacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggaggatccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctgggaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtccttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagatcatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggatatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttttttaatgagaacgagcagctagctttctgcccttctattgtggttccaggggtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccagaggtatcgacttggaccaaatatttgncacttcctgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="85682" stop="87540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85982" g_stop="86002" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86003" i_stop="86533" i_length="531">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.786" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86534" g_stop="87240" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="727" r_length="706" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E465495" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85982" e_stop="86002"/>
          <exon e_start="86534" e_stop="87240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGTTCTACACCAGAGAGGTAGGCCAAACATCAATTTGACGAGTTACAGCTACTATAGTTCTGTACCTTCGTACTTCAATTTCCATATACAGACTGGAGTATGCATGTTTTAGTGATTCCCTTATTAGCACACGGCTTAATAATAAGTACCTCAATTGCATGTTGGCTGGACTGCTTCATAGACAATGTTATGTTGCAATTCAAAAAAACGATATGAAGTTCATATAATTTTTTTCTTAGTGTATCTGCATCCCATAGGGATCCATCTTTAAGTACCCTGAATATGGGTCCATGCGTTTAGTAACTTTTCTAGTAGGTTATGAAATATGAAGCGTTGCTTAACATCATATTAGAGACTATCGGGCCCTGTGACATTCAGTAACTTTCAGTGAATTTTGTGCTGCCTAATTTTCATGAATCACACCCGTTTTTTCGTATACTTTTTGGGAAATGGTCTCATTGCTTTATAAATATGCATGTGTTTGTGATTTGGTTAGTTGCATTTGAAGTTAATCCTTAATTTCTGCTCAATTTGCAATATACCATCAGAGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTATTGCAACTTCCTGCTAA</genome_strand>
        <mrna_strand>GTCAAGTTCTACACCAGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATTTTGATCTGGTAGGGAACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGATCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCCTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGATCATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGATATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTTTTTAATGAGAACGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCAGAGGTATCGACTTGGACCAAATATTTGNCACTTCCTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334240" ref_strand="+" ref_description="SGN-E334240 [cTOD-21-N2]">
      <seq>agttttacaccagagagggaaactttgatctggtagggaacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggagggtccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctggaaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtctttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagaacatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggacatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttctttaatgagaatgagcagctagctttctgcccttctattgtggntccaggtgtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccangagtatcgacttggacccaactatttgcaacttcctgctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86232" stop="87541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86534" g_stop="87241" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="725" r_length="708" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E334240" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86534" e_stop="87241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTA-TTGCAACTTCCTGCTAAT</genome_strand>
        <mrna_strand>GGAAACTTTGATCTGGTAGGGAACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGGTCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGAAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCTTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGAACATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGACATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTCTTTAATGAGAATGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGNTCCAGGTGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCANGAGTATCGACTTGGACCCAACTATTTGCAACTTCCTGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402717" ref_strand="+" ref_description="SGN-E402717 [PPC-8-D7]">
      <seq>ttgatctggtagggaacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggaggatccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctgggaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtccttgttggaagaaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagatcatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggatatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttttttaatgagaacgagcagctagctttctgcctttctattgtggttccagggggtttattactcagatgataagatgcttcaaactcgtattttctcctactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86241" stop="87492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86541" g_stop="87192" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E402717" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86541" e_stop="87192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAG-AAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCA-GGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTG</genome_strand>
        <mrna_strand>TTGATCTGGTAGGGAACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGATCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCCTTGTTGGAAGAAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGATCATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGATATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTTTTTAATGAGAACGAGCAGCTAGCTTTCTGCCTTTCTATTGTGGTTCCAGGGGGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280423" ref_strand="+" ref_description="SGN-E280423 [cLER-1-D20]">
      <seq>tgatctggtagggaacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggagggtccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctggaaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtctttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagaacatgaagacaaatttgactttgatccacttgatgtgacaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86242" stop="87319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86542" g_stop="87019" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E280423" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86542" e_stop="87019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAAC</genome_strand>
        <mrna_strand>TGATCTGGTAGGGAACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGGTCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGAAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCTTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGAACATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740614" ref_strand="+" ref_description="SGN-E740614 [LC22AG11]">
      <seq>ctctattggttattaagaccacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggagggtccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctggaaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtctttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagaacatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggacatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttctttaatgagaatgagcagctagctttctgcccttctattgtggttccaggtgtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccagaggtatcgacttggaccaaactatttgcaacttcctgctaatgctccaaagtgtgctcatcacaacaatcactatgatggctctatgaattttatgcacagggatgaggagatcgactacttcccttcaaggtatgatcaagttcgccatgctgaggtgtatcctattccttncacagtttgcagtggcaaacgcgagaagtgtatcattcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86256" stop="88139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86553" g_stop="87310" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="775" r_length="758" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87311" i_stop="87740" i_length="430">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.106" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87830" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="865" r_length="90" r_score="0.867"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87831" i_stop="87991" i_length="161">
            <donor d_prob="0.973" d_score="0.84"/>
            <acceptor a_prob="0.949" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87992" g_stop="88005" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="866" r_stop="879" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E740614" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86553" e_stop="87310"/>
          <exon e_start="87741" e_stop="87830"/>
          <exon e_start="87992" e_stop="88005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTA-TTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAGCAATCACTATGATGGCTCTATCAATTTTATGCACAGGGATGAGGAGGTACATTTTCTCTTCTTCCATTACAGAACATATCCATCCATGGATATCTGATCTTAATCTTAAGATTTCTTACACCGTTAATTAAGTTTCCTTTATTTTTACCATGTATAAGATAAAATTACTTTTCTAGCGAAGGTGATATAATAACTTAGAAAGATATGGGAATAGCCAGTTATTCTGCACTGATATTGTAAAAGTTCTTTACATGTCAGTATATATAACTTAAATTCTATGCTAATACTGCATAATACTGATGCGTTAGTGCAGCAAATGCGCTTTTTGCTTAGCTTGGAAGTGTTCATGCACATTGAAGTAGTTCGTTTGATATGTAGACTGTAGTGTTGTGACTTCAGTTTATTAAATGTCTTGGTTTATTTATGTTTTTAATTATGGTGAGACTTTATAATAGTTAATGCATGGTTATTTAAAGATCAGCTACTTCCGTTCAAGGTATGATCAAGTTTGCCATGCTGAGATGTATCCTATTCCTTCAACAGTCTGCTGTGGTAAACGAAAGAAGGTTTGTTCCTTTTTACCTATTATGTAATAAAGCTTGAGGCTGAATTAAGACTGTAACTTCTTAAGCAGTGTAACTAGATATCCAGGAAATGCATATTGACGTGGACCGTTAATCCAAAACAAGACTTTTTTTAACTTTTGTGCTGCTGAAATTTCTTACAGTGTATCATTCAGAA</genome_strand>
        <mrna_strand>ACCACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGGTCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGAAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCTTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGAACATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGACATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTCTTTAATGAGAATGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGTGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCAGAGGTATCGACTTGGACCAAACTATTTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAACAATCACTATGATGGCTCTATGAATTTTATGCACAGGGATGAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACTACTTCCCTTCAAGGTATGATCAAGTTCGCCATGCTGAGGTGTATCCTATTCCTTNCACAGTTTGCAGTGGCAAACGCGAGAAG.................................................................................................................................................................TGTATCATTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342286" ref_strand="+" ref_description="SGN-E342286 [cTOF-8-E18]">
      <seq>aacaacttccccgtcttcttcatccgtgatggaatgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggagggtccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctggaaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtctttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagaacatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggacatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttctttaatgagaatgagcagctagctttctgcccttctattgtggttccaggtgtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccagaggtatcgacttggaccaaactatttgcaacttcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86255" stop="87537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86555" g_stop="87237" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E342286" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86555" e_stop="87237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTA-TTGCAACTTCCTGC</genome_strand>
        <mrna_strand>AACAACTTCCCCGTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGGTCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGAAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCTTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGAACATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGACATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTCTTTAATGAGAATGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGTGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCAGAGGTATCGACTTGGACCAAACTATTTGCAACTTCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735963" ref_strand="+" ref_description="SGN-E735963 [LC03DD08]">
      <seq>ctcttttgtatattcaaactccaggtggggcgccgtcttcatctctcgacggaatggagtcccctgaaatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggagggtccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctggaaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtctttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagaacatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggacatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttctttaatgagaatgagcagctagctttctgcccttctattgtggttccaggtgtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccagaggtatcgacttggaccaaactatttgcaacttcctgctaatgctccaaagtgtgctcatcacaacaatcactatgatggctctatgaattttatgcacagggatgaggagatcgactacttcccttncaggtatgatcaagttcgccatgctgaggtgtatcctattccttcaacagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86269" stop="88111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86585" g_stop="87310" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="776" r_length="726" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87311" i_stop="87740" i_length="430">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.106" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87811" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="847" r_length="71" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E735963" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86585" e_stop="87310"/>
          <exon e_start="87741" e_stop="87811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGAATT--TCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTA-TTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAGCAATCACTATGATGGCTCTATCAATTTTATGCACAGGGATGAGGAGGTACATTTTCTCTTCTTCCATTACAGAACATATCCATCCATGGATATCTGATCTTAATCTTAAGATTTCTTACACCGTTAATTAAGTTTCCTTTATTTTTACCATGTATAAGATAAAATTACTTTTCTAGCGAAGGTGATATAATAACTTAGAAAGATATGGGAATAGCCAGTTATTCTGCACTGATATTGTAAAAGTTCTTTACATGTCAGTATATATAACTTAAATTCTATGCTAATACTGCATAATACTGATGCGTTAGTGCAGCAAATGCGCTTTTTGCTTAGCTTGGAAGTGTTCATGCACATTGAAGTAGTTCGTTTGATATGTAGACTGTAGTGTTGTGACTTCAGTTTATTAAATGTCTTGGTTTATTTATGTTTTTAATTATGGTGAGACTTTATAATAGTTAATGCATGGTTATTTAAAGATCAGCTACTTCCGTTCAAGGTATGATCAAGTTTGCCATGCTGAGATGTATCCTATTCCTTCAACAGTCTG</genome_strand>
        <mrna_strand>GGAATGGAGTCCCCTGAAATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGGTCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGAAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCTTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGAACATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGACATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTCTTTAATGAGAATGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGTGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCAGAGGTATCGACTTGGACCAAACTATTTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAACAATCACTATGATGGCTCTATGAATTTTATGCACAGGGATGAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACTACTTCCCTTNCAGGTATGATCAAGTTCGCCATGCTGAGGTGTATCCTATTCCTTCAACAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458902" ref_strand="+" ref_description="SGN-E458902 [cPRO-32-B18]">
      <seq>atgaagttccctgacatggtccatgctctgaagccaaatcctaagtcccatatccaggagaattggagggtccttgattttttctctcatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctgggaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtccttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagatcatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggatatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttttttaatgagaatgagcagctagctttctgcccttctattgtggttccaggggtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccagaggtatcgacttggaccaaattatttgcaacttcctgctaatgctccaaagtgtgctcatcacaacaatcactatgatggctctatgaattttatgcacggggatgaggagatcgactacttccccttcaggtatgatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86288" stop="87617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86588" g_stop="87310" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E458902" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86588" e_stop="87310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGG-GGGTCCTGGA--ATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTA-TTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAGCAATCACTATGATGGCTCTATCAATTTTATGCACAGGGATGAGGAG</genome_strand>
        <mrna_strand>ATGAAGTTCCCTGACATGGTCCATGCTCTGAAGCCAAA-TCCTAAGTCCCATATCCAGGAGAATTGGAGGGTCCTTGATTTTTTCTCTCATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCCTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGATCATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGATATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTTTTTAATGAGAATGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCAGAGGTATCGACTTGGACCAAATTATTTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAACAATCACTATGATGGCTCTATGAATTTTATGCACGGGGATGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288697" ref_strand="+" ref_description="SGN-E288697 [cLES-8-I6]">
      <seq>ttcttttatcatcccgaaagcctgcacatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctggaaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtctttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagaacatgaagacaaatttgacttagatccacttgatgtgacaaaaacttggccagaggacatcttgcctttgtagccggtgggaagattagttctgaacaagaacattgataacttctttaatgagaatgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86392" stop="87405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86667" g_stop="87105" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E288697" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86667" e_stop="87105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGC</genome_strand>
        <mrna_strand>TTCTTTTATCATCCCGAAAGCCTGCACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGAAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCTTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGAACATGAAGACAAATTTGACTTAGATCCACTTGATGTGACAAAAACTTGGCCAGAGGACATCTTGCCTTTGTAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTCTTTAATGAGAATGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279890" ref_strand="+" ref_description="SGN-E279890 [cLER-8-K21]">
      <seq>acatgttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctggaaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtctttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagaacatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggacatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttctttaatgagaatgagcagctagctttctgcccttctattgtggttccaggtgtttattactcagatgataagatgcttcaaactcgtattttctcctactctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86392" stop="87495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86692" g_stop="87195" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E279890" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86692" e_stop="87195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATA</genome_strand>
        <mrna_strand>ACATGTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGAAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCTTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGAACATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGACATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTCTTTAATGAGAATGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGTGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461111" ref_strand="+" ref_description="SGN-E461111 [cPRO-34-G10]">
      <seq>gttcactttcctcttcgacgatattggtattccacaagattacaggcatatggacgggtctggtgtccacacattcacattgatcaacagggctgggaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtccttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagatcatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggatatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttttttaatgagaacgagcagctagctttctgcccttctattgtggttccaggggtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccagaggtatcgacttggaccaaattatttgcaacttcctgctaatgctccaaagtgtgctcatcacaacaatcactatgatggctctatgaattttatgcacagggatgaggagatcgactacttcccttcaaggtatgatcaagttcgccatgctgaggtgtatcctattccttcaacagtttgcagtggcaaacgtgagaagtgcatcattcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86396" stop="88139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86696" g_stop="87310" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87311" i_stop="87740" i_length="430">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.106" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87830" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="703" r_length="90" r_score="0.889"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87831" i_stop="87991" i_length="161">
            <donor d_prob="0.973" d_score="0.88"/>
            <acceptor a_prob="0.949" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87992" g_stop="88005" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="717" r_length="14" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E461111" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86696" e_stop="87310"/>
          <exon e_start="87741" e_stop="87830"/>
          <exon e_start="87992" e_stop="88005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTA-TTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAGCAATCACTATGATGGCTCTATCAATTTTATGCACAGGGATGAGGAGGTACATTTTCTCTTCTTCCATTACAGAACATATCCATCCATGGATATCTGATCTTAATCTTAAGATTTCTTACACCGTTAATTAAGTTTCCTTTATTTTTACCATGTATAAGATAAAATTACTTTTCTAGCGAAGGTGATATAATAACTTAGAAAGATATGGGAATAGCCAGTTATTCTGCACTGATATTGTAAAAGTTCTTTACATGTCAGTATATATAACTTAAATTCTATGCTAATACTGCATAATACTGATGCGTTAGTGCAGCAAATGCGCTTTTTGCTTAGCTTGGAAGTGTTCATGCACATTGAAGTAGTTCGTTTGATATGTAGACTGTAGTGTTGTGACTTCAGTTTATTAAATGTCTTGGTTTATTTATGTTTTTAATTATGGTGAGACTTTATAATAGTTAATGCATGGTTATTTAAAGATCAGCTACTTCCGTTCAAGGTATGATCAAGTTTGCCATGCTGAGATGTATCCTATTCCTTCAACAGTCTGCTGTGGTAAACGAAAGAAGGTTTGTTCCTTTTTACCTATTATGTAATAAAGCTTGAGGCTGAATTAAGACTGTAACTTCTTAAGCAGTGTAACTAGATATCCAGGAAATGCATATTGACGTGGACCGTTAATCCAAAACAAGACTTTTTTTAACTTTTGTGCTGCTGAAATTTCTTACAGTGTATCATTCAGAA</genome_strand>
        <mrna_strand>GTTCACTTTCCTC-TTCGACGATATTGGTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCCTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGATCATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGATATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTTTTTAATGAGAACGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCAGAGGTATCGACTTGGACCAAATTATTTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAACAATCACTATGATGGCTCTATGAATTTTATGCACAGGGATGAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACTACTTCCCTTCAAGGTATGATCAAGTTCGCCATGCTGAGGTGTATCCTATTCCTTCAACAGTTTGCAGTGGCAAACGTGAGAAG.................................................................................................................................................................TGCATCATTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290646" ref_strand="+" ref_description="SGN-E290646 [cLET-10-A23]">
      <seq>gcatatggacgggtctggtgtccacacattcacattgatcaacagggcttggaaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtctttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagaacatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggacatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttctttaatgagaatgagcagctagctttctgcccttctattgtggttccaggtgtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccagaggtatcgacttggaccaaactatttgcaacttcctgctaatgctccaaagtgtgctcatcacaacaatcactatgatggctctatgaattttatgcacagggatgaggagatcgactacttcccttcaaggtatgatcaagttcgccatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86442" stop="88082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86742" g_stop="87310" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87311" i_stop="87740" i_length="430">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.106" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87782" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="611" r_length="42" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E290646" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86742" e_stop="87310"/>
          <exon e_start="87741" e_stop="87782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGC-TGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTA-TTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAGCAATCACTATGATGGCTCTATCAATTTTATGCACAGGGATGAGGAGGTACATTTTCTCTTCTTCCATTACAGAACATATCCATCCATGGATATCTGATCTTAATCTTAAGATTTCTTACACCGTTAATTAAGTTTCCTTTATTTTTACCATGTATAAGATAAAATTACTTTTCTAGCGAAGGTGATATAATAACTTAGAAAGATATGGGAATAGCCAGTTATTCTGCACTGATATTGTAAAAGTTCTTTACATGTCAGTATATATAACTTAAATTCTATGCTAATACTGCATAATACTGATGCGTTAGTGCAGCAAATGCGCTTTTTGCTTAGCTTGGAAGTGTTCATGCACATTGAAGTAGTTCGTTTGATATGTAGACTGTAGTGTTGTGACTTCAGTTTATTAAATGTCTTGGTTTATTTATGTTTTTAATTATGGTGAGACTTTATAATAGTTAATGCATGGTTATTTAAAGATCAGCTACTTCCGTTCAAGGTATGATCAAGTTTGCCATGCT</genome_strand>
        <mrna_strand>GCATATGGACGGGTCTGGTGTCCACACATTCACATTGATCAACAGGGCTTGGAAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCTTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGAACATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGACATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTCTTTAATGAGAATGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGTGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCAGAGGTATCGACTTGGACCAAACTATTTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAACAATCACTATGATGGCTCTATGAATTTTATGCACAGGGATGAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACTACTTCCCTTCAAGGTATGATCAAGTTCGCCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309445" ref_strand="+" ref_description="SGN-E309445 [cTOA-2-I18]">
      <seq>tcaacagggctggaaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtctttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagaacatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggacatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttctttaatgagaatgagcagctagctttctgcccttctattgtggttccaggtgtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccagaggtatcgacttggaccaaactatttgcaacttcctgctaatgctccaaagtgtgctcatcacaacaatcactatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86480" stop="87578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86780" g_stop="87278" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E309445" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86780" e_stop="87278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTA-TTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAGCAATCACTATGATG</genome_strand>
        <mrna_strand>TCAACAGGGCTGGAAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCTTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGAACATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGACATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTCTTTAATGAGAATGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGTGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCAGAGGTATCGACTTGGACCAAACTATTTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAACAATCACTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747585" ref_strand="+" ref_description="SGN-E747585 [GI|5669645]">
      <seq>aatcgggctgggaaatcaacttatgtgaagttccaccggaagcccacatgtggtgtcatgtccttgctggaagaagaggcagaccgagtcggaggagcaaatcacagccacgctactcaggacctctatgactctactgcagctggaaattatcctgaatggaagatcttcattcagactatggatccggatcatgaagacagatttgactttgatccacttgatgtgacaaaaacttggccagatgatatcttgcctttgcagcccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86482" stop="87351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86782" g_stop="87053" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E747585" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86782" e_stop="87053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTG</genome_strand>
        <mrna_strand>AATCGGGCTGGGAAATCAACTTATGTGAAGTTCCA-CC-GGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTCAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292214" ref_strand="+" ref_description="SGN-E292214 [cLET-1-N17]">
      <seq>ggaaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtctttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagaacatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggacatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttctttaatgagaatgagcagctagctttctgcccttctattgtggttccaggtgtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccagaggtatcgacttggaccaaactatttgcaacttcctgctaatgctccaaagtgtgctcatcacaacaatcactatgatggctctatgaattttatgcacagggatgaggagatcgactacttcccttcaaggtatgatcaagttcgccatgctgaggtgtatcctattccttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86492" stop="88104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86791" g_stop="87310" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87311" i_stop="87740" i_length="430">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.106" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87804" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="583" r_length="64" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E292214" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86791" e_stop="87310"/>
          <exon e_start="87741" e_stop="87804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTA-TTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAGCAATCACTATGATGGCTCTATCAATTTTATGCACAGGGATGAGGAGGTACATTTTCTCTTCTTCCATTACAGAACATATCCATCCATGGATATCTGATCTTAATCTTAAGATTTCTTACACCGTTAATTAAGTTTCCTTTATTTTTACCATGTATAAGATAAAATTACTTTTCTAGCGAAGGTGATATAATAACTTAGAAAGATATGGGAATAGCCAGTTATTCTGCACTGATATTGTAAAAGTTCTTTACATGTCAGTATATATAACTTAAATTCTATGCTAATACTGCATAATACTGATGCGTTAGTGCAGCAAATGCGCTTTTTGCTTAGCTTGGAAGTGTTCATGCACATTGAAGTAGTTCGTTTGATATGTAGACTGTAGTGTTGTGACTTCAGTTTATTAAATGTCTTGGTTTATTTATGTTTTTAATTATGGTGAGACTTTATAATAGTTAATGCATGGTTATTTAAAGATCAGCTACTTCCGTTCAAGGTATGATCAAGTTTGCCATGCTGAGATGTATCCTATTCCTTCAA</genome_strand>
        <mrna_strand>GGAAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCTTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGAACATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGACATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTCTTTAATGAGAATGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGTGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCAGAGGTATCGACTTGGACCAAACTATTTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAACAATCACTATGATGGCTCTATGAATTTTATGCACAGGGATGAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACTACTTCCCTTCAAGGTATGATCAAGTTCGCCATGCTGAGGTGTATCCTATTCCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458244" ref_strand="+" ref_description="SGN-E458244 [cPRO-5-I17]">
      <seq>gggaaatcaacttatgtgaagttccactggaagcccacatgtggtgtcaagtccttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagatcatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggatatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttttttaatgagaatgagcagctagctttctgcccttctattgtggttccaggggtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccagaggtatcgacttggaccaaattatttgcaacttcctgctaatgctccaaagtgtgctcatcacaacaatcactatgatggctctatgaattttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86491" stop="87595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86791" g_stop="87295" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E458244" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86791" e_stop="87295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTA-TTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAGCAATCACTATGATGGCTCTATCAATTTTATG</genome_strand>
        <mrna_strand>GGGAAATCAACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCCTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGATCATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGATATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTTTTTAATGAGAATGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCAGAGGTATCGACTTGGACCAAATTATTTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAACAATCACTATGATGGCTCTATGAATTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305903" ref_strand="+" ref_description="SGN-E305903 [cLEY-17-N11]">
      <seq>aacttatgtgaagttccactggaagcccacatgtggtgtcaagtctttgttggaagaagaggcaatccgagtcggaggagcaaatcacagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagaacatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggacatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttctttaatgagaatgagcagctagctttctgcccttctattgtggttccaggtgtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccagaggtatcgacttggaccaaactatttgcaacttcctgctaatgctccaaagtgtgctcatcacaacaatcactatgatggctctatgaattttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86499" stop="87595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86799" g_stop="87295" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E305903" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86799" e_stop="87295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTA-TTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAGCAATCACTATGATGGCTCTATCAATTTTATG</genome_strand>
        <mrna_strand>AACTTATGTGAAGTTCCA--CTGGAAGCCCACATGTGGTGTCAAGTCTTTGTTGGAAGAAGAGGCAATCCGAGTCGGAGGAGCAAATCACAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGAACATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGACATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTCTTTAATGAGAATGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGTGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCAGAGGTATCGACTTGGACCAAACTATTTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAACAATCACTATGATGGCTCTATGAATTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699029" ref_strand="+" ref_description="SGN-E699029 [FA08BE11]">
      <seq>gcccacatgtggtgtcatgtcccttgctggaagaagaggcagaccgagtcggaggagccaatcacagccacgctacttaggacctctatgactctactgcagctggaaattatcctgaatggaagatcttcattccgactatggatccggatcatgacgaccgatttgactttgatccacttgatgtgacaaaaacttggccagatgatctcttgcctttgcagcccgcgggaagactacctctgaataagaaccctgataacttctttactgccaatgaccagcttgcctttctgcccttctatcgcggttccaggggttcattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86525" stop="87450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86825" g_stop="87150" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E699029" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86825" e_stop="87150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCACATGTGGTGTCATGT-CCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTG-CTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACT</genome_strand>
        <mrna_strand>GCCCACATGTGGTGTCATGTCCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCCAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCCGACTATGGATCCGGATCATGACGACCGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATCTCTTGCCTTTGCAGCCCGCGGGAAGACTACCTCTGAATAAGAACCCTGATAACTTCTTTACTGCCAATGACCAGCTTGCCTTTCTGCCCTTCTATCGCGGTTCCAGGGGTTCATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470882" ref_strand="+" ref_description="SGN-E470882 [cSTB-21-I13]">
      <seq>cagccatgctactcaggacctctatgactctattgcagctggaaattatcctgaatggaagctcttcattcagattatggatccagatcatgaagacaaatttgactttgatccacttgatgtgacaaaaacttggccagaggatatcttgcctttgcagccggtgggaagattagttctgaacaagaacattgataacttttttaatgagaatgagcagctagctttctgcccttctattgtggttccaggggtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccagaggtatcgacttggaccaaattatttgcaacttcctgctaatgctccaaagtgtgctcatcacaacaatcactatgatggctctatgaattttatgcacagggatgaggagatcgactacttcccttcaaggtatgatcaagttcgccatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86588" stop="88083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86888" g_stop="87310" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87311" i_stop="87740" i_length="430">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.106" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87783" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="467" r_length="43" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E470882" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86888" e_stop="87310"/>
          <exon e_start="87741" e_stop="87783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTA-TTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAGCAATCACTATGATGGCTCTATCAATTTTATGCACAGGGATGAGGAGGTACATTTTCTCTTCTTCCATTACAGAACATATCCATCCATGGATATCTGATCTTAATCTTAAGATTTCTTACACCGTTAATTAAGTTTCCTTTATTTTTACCATGTATAAGATAAAATTACTTTTCTAGCGAAGGTGATATAATAACTTAGAAAGATATGGGAATAGCCAGTTATTCTGCACTGATATTGTAAAAGTTCTTTACATGTCAGTATATATAACTTAAATTCTATGCTAATACTGCATAATACTGATGCGTTAGTGCAGCAAATGCGCTTTTTGCTTAGCTTGGAAGTGTTCATGCACATTGAAGTAGTTCGTTTGATATGTAGACTGTAGTGTTGTGACTTCAGTTTATTAAATGTCTTGGTTTATTTATGTTTTTAATTATGGTGAGACTTTATAATAGTTAATGCATGGTTATTTAAAGATCAGCTACTTCCGTTCAAGGTATGATCAAGTTTGCCATGCTG</genome_strand>
        <mrna_strand>CAGCCATGCTACTCAGGACCTCTATGACTCTATTGCAGCTGGAAATTATCCTGAATGGAAGCTCTTCATTCAGATTATGGATCCAGATCATGAAGACAAATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGAGGATATCTTGCCTTTGCAGCCGGTGGGAAGATTAGTTCTGAACAAGAACATTGATAACTTTTTTAATGAGAATGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCAGAGGTATCGACTTGGACCAAATTATTTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAACAATCACTATGATGGCTCTATGAATTTTATGCACAGGGATGAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACTACTTCCCTTCAAGGTATGATCAAGTTCGCCATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296991" ref_strand="+" ref_description="SGN-E296991 [cLET-26-L4]">
      <seq>aacattgataacttctttaatgagaatgagcagctagctttctgcccttctattgtggttccaggtgtttattactcagatgataagatgcttcaaactcgtattttctcctactctgatacccagaggtatcgacttggaccaaactatttgcaacttcctgctaatgctccaaagtgtgctcatcacaacaatcactatgatggctctatgaattttatgcacagggatgaggagatcgactacttcccttcaaggtatgatcaagttcgccatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="86775" stop="88083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87075" g_stop="87310" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87311" i_stop="87740" i_length="430">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.106" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87783" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="280" r_length="43" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E296991" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87075" e_stop="87310"/>
          <exon e_start="87741" e_stop="87783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTA-TTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAGCAATCACTATGATGGCTCTATCAATTTTATGCACAGGGATGAGGAGGTACATTTTCTCTTCTTCCATTACAGAACATATCCATCCATGGATATCTGATCTTAATCTTAAGATTTCTTACACCGTTAATTAAGTTTCCTTTATTTTTACCATGTATAAGATAAAATTACTTTTCTAGCGAAGGTGATATAATAACTTAGAAAGATATGGGAATAGCCAGTTATTCTGCACTGATATTGTAAAAGTTCTTTACATGTCAGTATATATAACTTAAATTCTATGCTAATACTGCATAATACTGATGCGTTAGTGCAGCAAATGCGCTTTTTGCTTAGCTTGGAAGTGTTCATGCACATTGAAGTAGTTCGTTTGATATGTAGACTGTAGTGTTGTGACTTCAGTTTATTAAATGTCTTGGTTTATTTATGTTTTTAATTATGGTGAGACTTTATAATAGTTAATGCATGGTTATTTAAAGATCAGCTACTTCCGTTCAAGGTATGATCAAGTTTGCCATGCTG</genome_strand>
        <mrna_strand>AACATTGATAACTTCTTTAATGAGAATGAGCAGCTAGCTTTCTGCCCTTCTATTGTGGTTCCAGGTGTTTATTACTCAGATGATAAGATGCTTCAAACTCGTATTTTCTCCTACTCTGATACCCAGAGGTATCGACTTGGACCAAACTATTTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAACAATCACTATGATGGCTCTATGAATTTTATGCACAGGGATGAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACTACTTCCCTTCAAGGTATGATCAAGTTCGCCATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550530" ref_strand="+" ref_description="SGN-E550530 [TUS-6-P22](-)">
      <seq>tatcacttttgaaatacgcaacacttggatctcattctggtctcagatttgatcacagaacaggcctgggtggttctctctgatggatgtaatgccctaacacgatactagttgaacaattttgttgatagtactaaacagggcgaccttcacagaaattatatacaaggatgtggctttgggaatttccagatcagtatgttgttgggcctacttatggatcctgtggtttgtgcttggagatcagtttgcttggacgtgtctgtgagactaataggttcatatgtactggtcataacgatccgtgaatgtgttggatcttactttggcaccctatcttgaaagtttcatcgatgaaattttatccttgctatcagtctctcaagaactctactgctgaaaagaaaacatggaagcttagtttgcggcactgcttaatgtcataaagagaactcctggtctgtacttctcttgtgatgtcaatataagattgagggacagtcgagtagaaaaaaaggaagtgcaagaatgatagtcacctagtttcaccaggtttgttattcttgattatcacaaaaacttccagttctggaagcttcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="87848" stop="90979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88148" g_stop="88193" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88194" i_stop="88363" i_length="170">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88364" g_stop="88458" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="141" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88459" i_stop="89200" i_length="742">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.705" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89201" g_stop="89336" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="277" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89337" i_stop="89935" i_length="599">
            <donor d_prob="0.789" d_score="0.98"/>
            <acceptor a_prob="0.715" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89936" g_stop="90062" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="404" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90063" i_stop="90165" i_length="103">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90166" g_stop="90256" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="495" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90257" i_stop="90572" i_length="316">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90573" g_stop="90679" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="602" r_length="107" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E550530" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88148" e_stop="88193"/>
          <exon e_start="88364" e_stop="88458"/>
          <exon e_start="89201" e_stop="89336"/>
          <exon e_start="89936" e_stop="90062"/>
          <exon e_start="90166" e_stop="90256"/>
          <exon e_start="90573" e_stop="90679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACTTTTGAAATACGCAACACTTGGATCTCATTCTGGTCTCAGGTCAGCATTCCATCAGCCAAACAGGCACTTAAAATGTCTTTATCTCGAGATCATGATGGAGATAACATAAACTAAAAAAGTTATAGTCAACAAATTGCTATTATGACCTCAAGCTTTTTCTTTCGTCGATCAATGCCACTATAAAATCTACATTGCTGTTTGATATGCAGATTTGATCACAGAACAGGCCTGGGTGGTTCTCACTGATGGATGTAATGCCCTAACACGATACTAGTTGAACAATTTTGTTGATAGTACTAAACAGGTAATGATGCTTTCTTACCAGTAATTAGTTGTTACTCAGGTTTGTATGTCATATGAAGTTGGTAGCGTGCATTATATGCTGTCACTTGCAACTTGGTTTCACACTAAATTGCCAGTTGTAATTTTGGAAAGCATTTTTAAAATAGTACTAAGCTTCATATATGTGAGCCATCTGCAAAGTATTAACTGAACCTAGTATTATCATTCGCAATATGCTGCCATTTTATTGGATTAGGTTCTTGTTGACTACTAGGAGATACTCTCTCAGTTTCAATTTATTTATTTGATTTTGATTTGACATTGAGTTCAAGAAAATAAATAAAGAATTTTGAATCTTGTGTTCTTTAAGTCAAGAAAAGGAAAAAAACATTTTTTTTAGAACGGAATAAAAGGAAAATTCAAACAAATAAACTGAAAAGGGGGAGTACTTTAATGTTCTCCGAGGAAAGAAAGGACTTTGAACTAACACACATAATTTCTGCATTATTTTGTTCTGTTAATTACATCACAAGTTGTTCTGATTGCACTACTAATTGCTAAGGATGTCACAGAGTGTACTGATGTGACACATCCATATATATTACTCGTATCAACCTAGCTGCATAATGCATACATGTGTTGCAAGTAAATTCTTGTGTTGGTATGTCTATATTTTTCATATCCCACTTAAATTGATTCGCAAAGGCAATGATTTGGTAATCAACTTTGTGTTTCTCTGTATCATTTTAATGCTGATGGAGAAGGGCGACCTTCACAGAAATTATATACAAGGATGTGGCTTTGGGAATTTCCAGATCAGTATGTTGTTGGGCCTACTTATGGATCCTGTGGTTTGTGCTTGGAGATCAGTTTGCTTGGATGTGTCTGTGAGACTAATAGGTTGCTTCTTTTACTCTTTATAAATTTCTTCCGGACATAAATTATTTATTAAGCTAATGATATGTACTTGTTCGCTATGTTAGATGAGGTTCTAAAATGCAGTTCAATTCGTGTTCCCAAAATTCAGAAAATATTTGGTGTTATAGACATGCTAAAGCTTTTGGCTGGTAAGAACTTAGGAAGAGCTACAATATCAGGATTTTGTTTTTTATATTCAATAGCAGGGCAGCTCTCTGACATACATCAATAAATCTTTACATTATCGAAAAAAATGTCTGTTATATATGTCAAGAATGTACCCTTTGTTGCTCATTTTCTTGAAGATTTTTTTTTCCGTAAAATTATCATACACATATACAAAGTATATACCAATGTCTTGGTCTTGCCCAATTATGCATTTGACAGGTATCTTGCATTTTAGGTGTTGAGCAAAACCAGGACTATGAAATTTAGAACAAATTTTATCATGACATTGGAAAACATATCCTTATCTCAAAAGAAGATTGAGAAGACATAGCATGGTAGAAAGAAGTTCGAAGAGAAATATGAATTATGCATTTTTTAGGTATCAATTAAGGTTGCTCTGATCTTGCATTCAGGTTCATATGTACTGGTCATAACGATCCGTGAATGTGTTGGATCTTACTTTGGCACCCTATCTTGAAAGTTTCATCGATGAAATTTTATCCTTGCTATCAGTCTCTCAAGAACTCTACTGCTGAAAAGGTCGGTTTTCGATTTCCTAGTTAATTTCCTACCCTATTTATTTTTAATCTCATGCTGGTGTCTTCTATTTCTGTTCCTATGATATTGCTTTGGCTTTTGGCAGAAAACATGGAAGCTTAGTTTGCGGCACTGCTTAATGTCATAAAGAGAACTCCTGGTCTGTACTTCTCTTGTGATGTCAATATAAGATTGAGGTGAATTGTTTTTTCAATCCTTTTTACTGCTTGTGTTGCCTTTTTTCTTCTTTCCTTGTCTTGGGGTACCATTAGAAGTTAAATAACAGCCTAGCTGCACGGCAGAGTAAGTCCACAAAGAGTACAGAAATGGAGCAAATATGCTGTAGTCAATAGTCACTTTCGATTTGACCTTATCTAAAATAGTCACTTAAGATTCTGCGTGTTTCTGATATCTAACTACTCCATGCCTTTAGTTTTCATATCTGATGACTAGTTGCTGTTTATGAGATGATTAAGGGGACATCTCACGTGGTAACTTGCACTCTAATGATAGGGACAGTCGAGTAGAAAAAAAGGAAGTGCAAGAATGATAGTCACCTAGTTTCAACAGGTTTGTTATTCTTGATTATCACAAAAACTTGCAGTTCTTTAAGCTTCGGA</genome_strand>
        <mrna_strand>TATCACTTTTGAAATACGCAACACTTGGATCTCATTCTGGTCTCAG..........................................................................................................................................................................ATTTGATCACAGAACAGGCCTGGGTGGTTCTCTCTGATGGATGTAATGCCCTAACACGATACTAGTTGAACAATTTTGTTGATAGTACTAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGACCTTCACAGAAATTATATACAAGGATGTGGCTTTGGGAATTTCCAGATCAGTATGTTGTTGGGCCTACTTATGGATCCTGTGGTTTGTGCTTGGAGATCAGTTTGCTTGGACGTGTCTGTGAGACTAATAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATATGTACTGGTCATAACGATCCGTGAATGTGTTGGATCTTACTTTGGCACCCTATCTTGAAAGTTTCATCGATGAAATTTTATCCTTGCTATCAGTCTCTCAAGAACTCTACTGCTGAAAAG.......................................................................................................AAAACATGGAAGCTTAGTTTGCGGCACTGCTTAATGTCATAAAGAGAACTCCTGGTCTGTACTTCTCTTGTGATGTCAATATAAGATTGAG............................................................................................................................................................................................................................................................................................................................GGACAGTCGAGTAGAAAAAAAGGAAGTGCAAGAATGATAGTCACCTAGTTTCACCAGGTTTGTTATTCTTGATTATCACAAAAACTTCCAGTTCTGGAAGCTTCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396205" ref_strand="+" ref_description="SGN-E396205 [TUS-24-N20](-)">
      <seq>tggatttcattttggtttcagatttgatcacagaacaggcctgggtggttttcactgatggatgtaatgccctaacacgatactagttgaacaattttgttgatagtactaaacagggcgaccttcacagaaattatatacaaggatgtggctttgggaatttccagatcagtatgttgttgggcctacttatggatcctgtggtttgtgcttggagatcagtttgcttggatgtgtctgtgagactaataggttcatatgtactggtcataacgatccgtgaatgtgttggattttactttggcaccctatcttgaaagtttcatcgatgaaattttatccttgctatcagtttttcaagaactttactgctgaaaagaaaacatggaagcttagtttggggcactgcttaatgtcataaagagaactcctggtctgtacttttcttgggatgtcaatataagattgagggacagtcgagtagaaaaaaaggaagtgcaagaatgatagtcacctagtttcaacaggtttgttatttttgattatcacaaaaacttgcagttctttaagcttcggaatttttcattggaatgtcagttttcaatgaaccttaaaagacatgtatctatctttgtttggatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="88045" stop="91047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88173" g_stop="88193" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88194" i_stop="88363" i_length="170">
            <donor d_prob="0.657" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88364" g_stop="88458" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="116" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88459" i_stop="89200" i_length="742">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.705" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89201" g_stop="89336" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="252" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89337" i_stop="89935" i_length="599">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="0.715" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89936" g_stop="90062" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="379" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90063" i_stop="90165" i_length="103">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90166" g_stop="90256" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="470" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90257" i_stop="90572" i_length="316">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90573" g_stop="90747" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="645" r_length="175" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="678"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E396205" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88173" e_stop="88193"/>
          <exon e_start="88364" e_stop="88458"/>
          <exon e_start="89201" e_stop="89336"/>
          <exon e_start="89936" e_stop="90062"/>
          <exon e_start="90166" e_stop="90256"/>
          <exon e_start="90573" e_stop="90747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCTCATTCTGGTCTCAGGTCAGCATTCCATCAGCCAAACAGGCACTTAAAATGTCTTTATCTCGAGATCATGATGGAGATAACATAAACTAAAAAAGTTATAGTCAACAAATTGCTATTATGACCTCAAGCTTTTTCTTTCGTCGATCAATGCCACTATAAAATCTACATTGCTGTTTGATATGCAGATTTGATCACAGAACAGGCCTGGGTGGTTCTCACTGATGGATGTAATGCCCTAACACGATACTAGTTGAACAATTTTGTTGATAGTACTAAACAGGTAATGATGCTTTCTTACCAGTAATTAGTTGTTACTCAGGTTTGTATGTCATATGAAGTTGGTAGCGTGCATTATATGCTGTCACTTGCAACTTGGTTTCACACTAAATTGCCAGTTGTAATTTTGGAAAGCATTTTTAAAATAGTACTAAGCTTCATATATGTGAGCCATCTGCAAAGTATTAACTGAACCTAGTATTATCATTCGCAATATGCTGCCATTTTATTGGATTAGGTTCTTGTTGACTACTAGGAGATACTCTCTCAGTTTCAATTTATTTATTTGATTTTGATTTGACATTGAGTTCAAGAAAATAAATAAAGAATTTTGAATCTTGTGTTCTTTAAGTCAAGAAAAGGAAAAAAACATTTTTTTTAGAACGGAATAAAAGGAAAATTCAAACAAATAAACTGAAAAGGGGGAGTACTTTAATGTTCTCCGAGGAAAGAAAGGACTTTGAACTAACACACATAATTTCTGCATTATTTTGTTCTGTTAATTACATCACAAGTTGTTCTGATTGCACTACTAATTGCTAAGGATGTCACAGAGTGTACTGATGTGACACATCCATATATATTACTCGTATCAACCTAGCTGCATAATGCATACATGTGTTGCAAGTAAATTCTTGTGTTGGTATGTCTATATTTTTCATATCCCACTTAAATTGATTCGCAAAGGCAATGATTTGGTAATCAACTTTGTGTTTCTCTGTATCATTTTAATGCTGATGGAGAAGGGCGACCTTCACAGAAATTATATACAAGGATGTGGCTTTGGGAATTTCCAGATCAGTATGTTGTTGGGCCTACTTATGGATCCTGTGGTTTGTGCTTGGAGATCAGTTTGCTTGGATGTGTCTGTGAGACTAATAGGTTGCTTCTTTTACTCTTTATAAATTTCTTCCGGACATAAATTATTTATTAAGCTAATGATATGTACTTGTTCGCTATGTTAGATGAGGTTCTAAAATGCAGTTCAATTCGTGTTCCCAAAATTCAGAAAATATTTGGTGTTATAGACATGCTAAAGCTTTTGGCTGGTAAGAACTTAGGAAGAGCTACAATATCAGGATTTTGTTTTTTATATTCAATAGCAGGGCAGCTCTCTGACATACATCAATAAATCTTTACATTATCGAAAAAAATGTCTGTTATATATGTCAAGAATGTACCCTTTGTTGCTCATTTTCTTGAAGATTTTTTTTTCCGTAAAATTATCATACACATATACAAAGTATATACCAATGTCTTGGTCTTGCCCAATTATGCATTTGACAGGTATCTTGCATTTTAGGTGTTGAGCAAAACCAGGACTATGAAATTTAGAACAAATTTTATCATGACATTGGAAAACATATCCTTATCTCAAAAGAAGATTGAGAAGACATAGCATGGTAGAAAGAAGTTCGAAGAGAAATATGAATTATGCATTTTTTAGGTATCAATTAAGGTTGCTCTGATCTTGCATTCAGGTTCATATGTACTGGTCATAACGATCCGTGAATGTGTTGGATCTTACTTTGGCACCCTATCTTGAAAGTTTCATCGATGAAATTTTATCCTTGCTATCAGTCTCTCAAGAACTCTACTGCTGAAAAGGTCGGTTTTCGATTTCCTAGTTAATTTCCTACCCTATTTATTTTTAATCTCATGCTGGTGTCTTCTATTTCTGTTCCTATGATATTGCTTTGGCTTTTGGCAGAAAACATGGAAGCTTAGTTTGCGGCACTGCTTAATGTCATAAAGAGAACTCCTGGTCTGTACTTCTCTTGTGATGTCAATATAAGATTGAGGTGAATTGTTTTTTCAATCCTTTTTACTGCTTGTGTTGCCTTTTTTCTTCTTTCCTTGTCTTGGGGTACCATTAGAAGTTAAATAACAGCCTAGCTGCACGGCAGAGTAAGTCCACAAAGAGTACAGAAATGGAGCAAATATGCTGTAGTCAATAGTCACTTTCGATTTGACCTTATCTAAAATAGTCACTTAAGATTCTGCGTGTTTCTGATATCTAACTACTCCATGCCTTTAGTTTTCATATCTGATGACTAGTTGCTGTTTATGAGATGATTAAGGGGACATCTCACGTGGTAACTTGCACTCTAATGATAGGGACAGTCGAGTAGAAAAAAAGGAAGTGCAAGAATGATAGTCACCTAGTTTCAACAGGTTTGTTATTCTTGATTATCACAAAAACTTGCAGTTCTTTAAGCTTCGGAATTTCTCATTGGAATGTCAGTTTTCAATGAACCTTAAAAGACATGTATCTATCTTTGTTTGGATCTAA</genome_strand>
        <mrna_strand>TGGATTTCATTTTGGTTTCAG..........................................................................................................................................................................ATTTGATCACAGAACAGGCCTGGGTGGTTTTCACTGATGGATGTAATGCCCTAACACGATACTAGTTGAACAATTTTGTTGATAGTACTAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGACCTTCACAGAAATTATATACAAGGATGTGGCTTTGGGAATTTCCAGATCAGTATGTTGTTGGGCCTACTTATGGATCCTGTGGTTTGTGCTTGGAGATCAGTTTGCTTGGATGTGTCTGTGAGACTAATAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATATGTACTGGTCATAACGATCCGTGAATGTGTTGGATTTTACTTTGGCACCCTATCTTGAAAGTTTCATCGATGAAATTTTATCCTTGCTATCAGTTTTTCAAGAACTTTACTGCTGAAAAG.......................................................................................................AAAACATGGAAGCTTAGTTTGGGGCACTGCTTAATGTCATAAAGAGAACTCCTGGTCTGTACTTTTCTTGGGATGTCAATATAAGATTGAG............................................................................................................................................................................................................................................................................................................................GGACAGTCGAGTAGAAAAAAAGGAAGTGCAAGAATGATAGTCACCTAGTTTCAACAGGTTTGTTATTTTTGATTATCACAAAAACTTGCAGTTCTTTAAGCTTCGGAATTTTTCATTGGAATGTCAGTTTTCAATGAACCTTAAAAGACATGTATCTATCTTTGTTTGGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397825" ref_strand="+" ref_description="SGN-E397825 [TUS-24-J5](-)">
      <seq>tgggaatttccagatcattatgttgttgggcctacttatggatcctgtggtttgtgcttggaaatcagtttgcttggatgtgtctgtgagactaataggttcatatgtactggtcataacgatccgtgaatgtgttggatcttactttggcaccctatcttgaaagtttcatcgatgaaattttatccttgctatcagtttttcaagaactctactgctgaaaagaaaacatggaagcttagtttgcggcactgcttaatgtcataaagagaactcctggtttgtacttttcttgtgatgtcaatataagattgagggacagtcgagtagaaaaaaaggaagtgcaagaatgatagtcacctagtttcaacaggtttgttattcttgattatcacaaaaacttgcagttttttaagcttcggaatttttcattggaatgtcagttttcaatgaaccttaaaagacatgtatctatctttgtttggatctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="88939" stop="91047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89239" g_stop="89336" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89337" i_stop="89935" i_length="599">
            <donor d_prob="0.789" d_score="0.98"/>
            <acceptor a_prob="0.715" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89936" g_stop="90062" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="225" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90063" i_stop="90165" i_length="103">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90166" g_stop="90256" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="316" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90257" i_stop="90572" i_length="316">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90573" g_stop="90747" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="491" r_length="175" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="516"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E397825" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89239" e_stop="89336"/>
          <exon e_start="89936" e_stop="90062"/>
          <exon e_start="90166" e_stop="90256"/>
          <exon e_start="90573" e_stop="90747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAATTTCCAGATCAGTATGTTGTTGGGCCTACTTATGGATCCTGTGGTTTGTGCTTGGAGATCAGTTTGCTTGGATGTGTCTGTGAGACTAATAGGTTGCTTCTTTTACTCTTTATAAATTTCTTCCGGACATAAATTATTTATTAAGCTAATGATATGTACTTGTTCGCTATGTTAGATGAGGTTCTAAAATGCAGTTCAATTCGTGTTCCCAAAATTCAGAAAATATTTGGTGTTATAGACATGCTAAAGCTTTTGGCTGGTAAGAACTTAGGAAGAGCTACAATATCAGGATTTTGTTTTTTATATTCAATAGCAGGGCAGCTCTCTGACATACATCAATAAATCTTTACATTATCGAAAAAAATGTCTGTTATATATGTCAAGAATGTACCCTTTGTTGCTCATTTTCTTGAAGATTTTTTTTTCCGTAAAATTATCATACACATATACAAAGTATATACCAATGTCTTGGTCTTGCCCAATTATGCATTTGACAGGTATCTTGCATTTTAGGTGTTGAGCAAAACCAGGACTATGAAATTTAGAACAAATTTTATCATGACATTGGAAAACATATCCTTATCTCAAAAGAAGATTGAGAAGACATAGCATGGTAGAAAGAAGTTCGAAGAGAAATATGAATTATGCATTTTTTAGGTATCAATTAAGGTTGCTCTGATCTTGCATTCAGGTTCATATGTACTGGTCATAACGATCCGTGAATGTGTTGGATCTTACTTTGGCACCCTATCTTGAAAGTTTCATCGATGAAATTTTATCCTTGCTATCAGTCTCTCAAGAACTCTACTGCTGAAAAGGTCGGTTTTCGATTTCCTAGTTAATTTCCTACCCTATTTATTTTTAATCTCATGCTGGTGTCTTCTATTTCTGTTCCTATGATATTGCTTTGGCTTTTGGCAGAAAACATGGAAGCTTAGTTTGCGGCACTGCTTAATGTCATAAAGAGAACTCCTGGTCTGTACTTCTCTTGTGATGTCAATATAAGATTGAGGTGAATTGTTTTTTCAATCCTTTTTACTGCTTGTGTTGCCTTTTTTCTTCTTTCCTTGTCTTGGGGTACCATTAGAAGTTAAATAACAGCCTAGCTGCACGGCAGAGTAAGTCCACAAAGAGTACAGAAATGGAGCAAATATGCTGTAGTCAATAGTCACTTTCGATTTGACCTTATCTAAAATAGTCACTTAAGATTCTGCGTGTTTCTGATATCTAACTACTCCATGCCTTTAGTTTTCATATCTGATGACTAGTTGCTGTTTATGAGATGATTAAGGGGACATCTCACGTGGTAACTTGCACTCTAATGATAGGGACAGTCGAGTAGAAAAAAAGGAAGTGCAAGAATGATAGTCACCTAGTTTCAACAGGTTTGTTATTCTTGATTATCACAAAAACTTGCAGTTCTTTAAGCTTCGGAATTTCTCATTGGAATGTCAGTTTTCAATGAACCTTAAAAGACATGTATCTATCTTTGTTTGGATCTAA</genome_strand>
        <mrna_strand>TGGGAATTTCCAGATCATTATGTTGTTGGGCCTACTTATGGATCCTGTGGTTTGTGCTTGGAAATCAGTTTGCTTGGATGTGTCTGTGAGACTAATAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATATGTACTGGTCATAACGATCCGTGAATGTGTTGGATCTTACTTTGGCACCCTATCTTGAAAGTTTCATCGATGAAATTTTATCCTTGCTATCAGTTTTTCAAGAACTCTACTGCTGAAAAG.......................................................................................................AAAACATGGAAGCTTAGTTTGCGGCACTGCTTAATGTCATAAAGAGAACTCCTGGTTTGTACTTTTCTTGTGATGTCAATATAAGATTGAG............................................................................................................................................................................................................................................................................................................................GGACAGTCGAGTAGAAAAAAAGGAAGTGCAAGAATGATAGTCACCTAGTTTCAACAGGTTTGTTATTCTTGATTATCACAAAAACTTGCAGTTTTTTAAGCTTCGGAATTTTTCATTGGAATGTCAGTTTTCAATGAACCTTAAAAGACATGTATCTATCTTTGTTTGGATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549892" ref_strand="+" ref_description="SGN-E549892 [TUS-6-H19]">
      <seq>ctctgacatacatcaataaatctttacattatcgaaaaaaatgtctgttatatatgtcaagaatgtaccctttgttgctcattttcttgaagatttttttttccgtaaaattatcatacacatatacaaagtatataccaatgtcttggtcttgcccaattatgcatttgacaggaatcttgcattttaggtgttgagcaaaaccaggactatgaaatttagaacaaattttatcatgacattggaaaacatatccttatctcaaaagaagattgagaagacatatcatggtagaaagaagttcgaagagaaatatgaattatgcattttttaggtatcaattaaggttgctctgatcttgcattcaggttcatatgtactggtcataacgatccgtgaatgtgttggatcttactttggcaccctatcttgaaagtttcatcgatgaaattttatccttgctatcagtctctcaagaactctactgctgaaaaggtcggttttcgatttcctagttaatttcctaccctatttatttttaacctcatgctggtgtcttctatttctgttcctatgatattgctttggcttttggcagaaaacatggaagcttagtttgcggcactgcttaatgtcataaagagaactcctggtctgtacttctcttgtgatgacaatataacattgaggagaattgttttttcactctttttactgcttgtgttgcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="89268" stop="90600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89568" g_stop="90300" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E549892" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89568" e_stop="90300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGACATACATCAATAAATCTTTACATTATCGAAAAAAATGTCTGTTATATATGTCAAGAATGTACCCTTTGTTGCTCATTTTCTTGAAGATTTTTTTTTCCGTAAAATTATCATACACATATACAAAGTATATACCAATGTCTTGGTCTTGCCCAATTATGCATTTGACAGGTATCTTGCATTTTAGGTGTTGAGCAAAACCAGGACTATGAAATTTAGAACAAATTTTATCATGACATTGGAAAACATATCCTTATCTCAAAAGAAGATTGAGAAGACATAGCATGGTAGAAAGAAGTTCGAAGAGAAATATGAATTATGCATTTTTTAGGTATCAATTAAGGTTGCTCTGATCTTGCATTCAGGTTCATATGTACTGGTCATAACGATCCGTGAATGTGTTGGATCTTACTTTGGCACCCTATCTTGAAAGTTTCATCGATGAAATTTTATCCTTGCTATCAGTCTCTCAAGAACTCTACTGCTGAAAAGGTCGGTTTTCGATTTCCTAGTTAATTTCCTACCCTATTTATTTTTAATCTCATGCTGGTGTCTTCTATTTCTGTTCCTATGATATTGCTTTGGCTTTTGGCAGAAAACATGGAAGCTTAGTTTGCGGCACTGCTTAATGTCATAAAGAGAACTCCTGGTCTGTACTTCTCTTGTGATGTCAATATAAGATTGAGGTGAATTGTTTTTTCAATCCTTTTTACTGCTTGTGTTGCCTTTT</genome_strand>
        <mrna_strand>CTCTGACATACATCAATAAATCTTTACATTATCGAAAAAAATGTCTGTTATATATGTCAAGAATGTACCCTTTGTTGCTCATTTTCTTGAAGATTTTTTTTTCCGTAAAATTATCATACACATATACAAAGTATATACCAATGTCTTGGTCTTGCCCAATTATGCATTTGACAGGAATCTTGCATTTTAGGTGTTGAGCAAAACCAGGACTATGAAATTTAGAACAAATTTTATCATGACATTGGAAAACATATCCTTATCTCAAAAGAAGATTGAGAAGACATATCATGGTAGAAAGAAGTTCGAAGAGAAATATGAATTATGCATTTTTTAGGTATCAATTAAGGTTGCTCTGATCTTGCATTCAGGTTCATATGTACTGGTCATAACGATCCGTGAATGTGTTGGATCTTACTTTGGCACCCTATCTTGAAAGTTTCATCGATGAAATTTTATCCTTGCTATCAGTCTCTCAAGAACTCTACTGCTGAAAAGGTCGGTTTTCGATTTCCTAGTTAATTTCCTACCCTATTTATTTTTAACCTCATGCTGGTGTCTTCTATTTCTGTTCCTATGATATTGCTTTGGCTTTTGGCAGAAAACATGGAAGCTTAGTTTGCGGCACTGCTTAATGTCATAAAGAGAACTCCTGGTCTGTACTTCTCTTGTGATGACAATATAACATTGAGGAGAATTGTTTTTTCACT-CTTTTTACTGCTTGTGTTGCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369185" ref_strand="+" ref_description="SGN-E369185 [TUS-23-I14]">
      <seq>tctgacatacatcaataaatctttacattatcgaaaaaaatgtctgttatatatgtcaagaatgtaccctttgttgctcattttcttgaagatttttttttccgtaaaattatcatacacatatacaaagtatataccaatgtcttggtcttgcccaattatgcatttgacaggtatcttgcattttaggtgttgagcaaaaccaggactatgaaatttagaacaaattttatcatgacattggaaaacatatccttatctcaaaagaagattgagaagacatagcatggtagaaagaagttcgaagagaaatatgaattatgcattttttaggtatcaattaaggttgctctgatcttgcattcaggttcatatgtactggtcataacgatccgtgaatgtgttggatcttactttggcaccctatcttgaaagtttcatcgatgaaattttatccttgctatcagtctctcaagaactctactgctgaaaaggtcggttttcgatttcctagttaattttctaccctatttatttttaatctcatgctggtgtcttctatttctgttcctatgatattgctttggcttttggcagaaaacatggaagcttagtttgcggcactgcttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="89269" stop="90501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89569" g_stop="90201" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E369185" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89569" e_stop="90201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGACATACATCAATAAATCTTTACATTATCGAAAAAAATGTCTGTTATATATGTCAAGAATGTACCCTTTGTTGCTCATTTTCTTGAAGATTTTTTTTTCCGTAAAATTATCATACACATATACAAAGTATATACCAATGTCTTGGTCTTGCCCAATTATGCATTTGACAGGTATCTTGCATTTTAGGTGTTGAGCAAAACCAGGACTATGAAATTTAGAACAAATTTTATCATGACATTGGAAAACATATCCTTATCTCAAAAGAAGATTGAGAAGACATAGCATGGTAGAAAGAAGTTCGAAGAGAAATATGAATTATGCATTTTTTAGGTATCAATTAAGGTTGCTCTGATCTTGCATTCAGGTTCATATGTACTGGTCATAACGATCCGTGAATGTGTTGGATCTTACTTTGGCACCCTATCTTGAAAGTTTCATCGATGAAATTTTATCCTTGCTATCAGTCTCTCAAGAACTCTACTGCTGAAAAGGTCGGTTTTCGATTTCCTAGTTAATTTCCTACCCTATTTATTTTTAATCTCATGCTGGTGTCTTCTATTTCTGTTCCTATGATATTGCTTTGGCTTTTGGCAGAAAACATGGAAGCTTAGTTTGCGGCACTGCTTAATG</genome_strand>
        <mrna_strand>TCTGACATACATCAATAAATCTTTACATTATCGAAAAAAATGTCTGTTATATATGTCAAGAATGTACCCTTTGTTGCTCATTTTCTTGAAGATTTTTTTTTCCGTAAAATTATCATACACATATACAAAGTATATACCAATGTCTTGGTCTTGCCCAATTATGCATTTGACAGGTATCTTGCATTTTAGGTGTTGAGCAAAACCAGGACTATGAAATTTAGAACAAATTTTATCATGACATTGGAAAACATATCCTTATCTCAAAAGAAGATTGAGAAGACATAGCATGGTAGAAAGAAGTTCGAAGAGAAATATGAATTATGCATTTTTTAGGTATCAATTAAGGTTGCTCTGATCTTGCATTCAGGTTCATATGTACTGGTCATAACGATCCGTGAATGTGTTGGATCTTACTTTGGCACCCTATCTTGAAAGTTTCATCGATGAAATTTTATCCTTGCTATCAGTCTCTCAAGAACTCTACTGCTGAAAAGGTCGGTTTTCGATTTCCTAGTTAATTTTCTACCCTATTTATTTTTAATCTCATGCTGGTGTCTTCTATTTCTGTTCCTATGATATTGCTTTGGCTTTTGGCAGAAAACATGGAAGCTTAGTTTGCGGCACTGCTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246193" ref_strand="+" ref_description="SGN-E246193 [cLEF-40-B12]">
      <seq>tctgacatacatcaataaatctttacattatcgaaaaaaatgtctgttgtatatgtcaagaatgtaccctttgttgctcattttcttgaagatttttttttccgtaaaattatcatacacatatacaaagtatataccaatgtcttggtcttgcccaattatgcatttgacaggtatcttgcattttaggtgttgagcaaaaccaggactatgaaatttagaacaaattttatcatgacattggaaaacatatccttatctcaaaagaagattgagaagacatagcatggtagaaagaagttcgaagagaaatatgaattatgcattttttaggtatcaattaaggttgctctgatcttgcattcaggttcatatgtactggtcataacgatccgtgaatgtgttggatcttactttggcaccctatcttgaaagtttcatcgatgaaattttatccttgctatcagtctctcaagaactctactgctgaaaaggtcggttttcgatttcctagttaatttcctaccctatttatttttaatctcatgctggggtcttctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="89269" stop="90432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89569" g_stop="90132" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E246193" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89569" e_stop="90132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGACATACATCAATAAATCTTTACATTATCGAAAAAAATGTCTGTTATATATGTCAAGAATGTACCCTTTGTTGCTCATTTTCTTGAAGATTTTTTTTTCCGTAAAATTATCATACACATATACAAAGTATATACCAATGTCTTGGTCTTGCCCAATTATGCATTTGACAGGTATCTTGCATTTTAGGTGTTGAGCAAAACCAGGACTATGAAATTTAGAACAAATTTTATCATGACATTGGAAAACATATCCTTATCTCAAAAGAAGATTGAGAAGACATAGCATGGTAGAAAGAAGTTCGAAGAGAAATATGAATTATGCATTTTTTAGGTATCAATTAAGGTTGCTCTGATCTTGCATTCAGGTTCATATGTACTGGTCATAACGATCCGTGAATGTGTTGGATCTTACTTTGGCACCCTATCTTGAAAGTTTCATCGATGAAATTTTATCCTTGCTATCAGTCTCTCAAGAACTCTACTGCTGAAAAGGTCGGTTTTCGATTTCCTAGTTAATTTCCTACCCTATTTATTTTTAATCTCATGCTGGTGTCTTCTATTT</genome_strand>
        <mrna_strand>TCTGACATACATCAATAAATCTTTACATTATCGAAAAAAATGTCTGTTGTATATGTCAAGAATGTACCCTTTGTTGCTCATTTTCTTGAAGATTTTTTTTTCCGTAAAATTATCATACACATATACAAAGTATATACCAATGTCTTGGTCTTGCCCAATTATGCATTTGACAGGTATCTTGCATTTTAGGTGTTGAGCAAAACCAGGACTATGAAATTTAGAACAAATTTTATCATGACATTGGAAAACATATCCTTATCTCAAAAGAAGATTGAGAAGACATAGCATGGTAGAAAGAAGTTCGAAGAGAAATATGAATTATGCATTTTTTAGGTATCAATTAAGGTTGCTCTGATCTTGCATTCAGGTTCATATGTACTGGTCATAACGATCCGTGAATGTGTTGGATCTTACTTTGGCACCCTATCTTGAAAGTTTCATCGATGAAATTTTATCCTTGCTATCAGTCTCTCAAGAACTCTACTGCTGAAAAGGTCGGTTTTCGATTTCCTAGTTAATTTCCTACCCTATTTATTTTTAATCTCATGCTGGGGTCTTCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369184" ref_strand="+" ref_description="SGN-E369184 [TUS-23-I14](-)">
      <seq>gtcacctagtttcaacaggtttgttattcttgattatcacaaaaacttgcagttctttaagcttcggaatttctcattggaatgtcagttttcaatgaaccttaaaagacatgtatctatctttgtttggatctaagtctctcttgaattgatgttttggggatggacctaagttggtacagttgtagagactaaacatgatgcaattgctatttttgtggtccaactccgtgaaaatgaattggtagatttcttgatcgtctctttgattggatatgatttatcctattttggtgtatgaattccctcggatgaagaaatgtttaagccaaaaagaaaacaggataggagatgaatgaggggaacagatgaaaagtgagacacatggcatcaagattaatctttgcagcaaattagaagttcttttacctgtttcattaaaaaaaattacggagtagaagatgctatttagaagtcatcaatgaaccttaaaagacatgtatctatctttgtttggatctaagtttctcttgaattgatgttttggagatgtatatagtttctctttgtaggttagttgatttgctttttgaggcataggcttcttgttgtccttcttcgtatatatcaccatctgttatttattgtgttttaattatcatattgttttgttattttatttttatctcgtaaaacataagattgtctgctataaaatgtcttccgacaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="90312" stop="91653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90612" g_stop="91353" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E369184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90612" e_stop="91353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACCTAGTTTCAACAGGTTTGTTATTCTTGATTATCACAAAAACTTGCAGTTCTTTAAGCTTCGGAATTTCTCATTGGAATGTCAGTTTTCAATGAACCTTAAAAGACATGTATCTATCTTTGTTTGGATCTAAGTCTCTCTTGAATTGATGTTTTGGGGATGGACCTAAGTTGGTACAGTTGTAGAGACTAAACATGATGCAATTGCTATTTTTGTGGTCCAACTCCGTGAAAATGAATTGGTAGATTTCTTGATCGTCTCTTTGATTGGATATGATTTATCCTATTTTGGTGTATGAATTCCCTCGGATGAAGAAATGTTTAAGCCAAAAAGAAAACAGGATAGGAGATGAATGAGGGGAACAGATGAAAAGTGAGACACATGGCATCAAGATTAATCTTTGCAGCAAATTAGAAGTTCTTTTACCTGTTTCATTAAAAAAAATTACGGAGTAGAAGATGCTATTTAGAAGTCATCAATGAACCTTAAAAGACATGTATCTATCTTTGTTTGGATCTAAGTTTCTCTTGAATTGATGTTTTGGAGATGTATATAGTTTCTCTTTGTAGGTTAGTTGATTTGCTTTTTGAGGCATAGGCTTCTTGTTGTCCTTCTTCGTATATATCACCATCTGTTATTTATTGTGTTTTAATTATCATATTGTTTTGTTATTTTATTTTTATCTCGTAAAACATAAGATTGTCTGCTATAAAATGTCTTCCGACAAACAAAAAAAAAA</genome_strand>
        <mrna_strand>GTCACCTAGTTTCAACAGGTTTGTTATTCTTGATTATCACAAAAACTTGCAGTTCTTTAAGCTTCGGAATTTCTCATTGGAATGTCAGTTTTCAATGAACCTTAAAAGACATGTATCTATCTTTGTTTGGATCTAAGTCTCTCTTGAATTGATGTTTTGGGGATGGACCTAAGTTGGTACAGTTGTAGAGACTAAACATGATGCAATTGCTATTTTTGTGGTCCAACTCCGTGAAAATGAATTGGTAGATTTCTTGATCGTCTCTTTGATTGGATATGATTTATCCTATTTTGGTGTATGAATTCCCTCGGATGAAGAAATGTTTAAGCCAAAAAGAAAACAGGATAGGAGATGAATGAGGGGAACAGATGAAAAGTGAGACACATGGCATCAAGATTAATCTTTGCAGCAAATTAGAAGTTCTTTTACCTGTTTCATTAAAAAAAATTACGGAGTAGAAGATGCTATTTAGAAGTCATCAATGAACCTTAAAAGACATGTATCTATCTTTGTTTGGATCTAAGTTTCTCTTGAATTGATGTTTTGGAGATGTATATAGTTTCTCTTTGTAGGTTAGTTGATTTGCTTTTTGAGGCATAGGCTTCTTGTTGTCCTTCTTCGTATATATCACCATCTGTTATTTATTGTGTTTTAATTATCATATTGTTTTGTTATTTTATTTTTATCTCGTAAAACATAAGATTGTCTGCTATAAAATGTCTTCCGACAAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404184" ref_strand="+" ref_description="SGN-E404184 [PPC-12-N2]">
      <seq>gaaaaaatggcgttaaggcttaccccctctctactgcccacttataatcatggaaaacccaaactagctacacttttcaattcaagatccaaattatcctttcaatttctttcaaaacccttcagaatcttggagtttgaatcaagaaaaacgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtatcggatacccaatggaggaaagtgtcggctgtgttgtttgatatggatggtgtgctctgcaatagtgaggagtcatcaagaaaagcggctgtggatgtttttgctgagatgggtgttcaagttaccgttgaagactttgtgcctttcatgggcatgggtgaagcaaacttcttaggtggtgttgctgctgctaagggtgttgaaagatttgatactgaggctgccaagaagaggttttttgagatatatttattaaagtatgcaaaaccgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91739" stop="94192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92039" g_stop="92393" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92394" i_stop="93781" i_length="1388">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93782" g_stop="93882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="456" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93883" i_stop="94029" i_length="147">
            <donor d_prob="0.977" d_score="0.92"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94030" g_stop="94045" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="472" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E404184" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92039" e_stop="92393"/>
          <exon e_start="93782" e_stop="93882"/>
          <exon e_start="94030" e_stop="94045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAATGGCGTTAAGGCTTACACCTTTTCTACTGCCCACTT------ATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGGGTAAAATCTTTGTTCTTTCTTGATTATTACATTCTTTTTATTTATGTTCTTGGGAAGGTTTCTTTGTCAATTTGCTTTGTATTTTCCCTTCTTGATTTTCTTTCATGTGAAAGATGGGTATGAAATTATCATCGGTTCGCGGTGTACTATTTAAGGCTACTGATTCTTGATTGAAAAGTAGTTTTTTGATTTATATGTTTGGGAACGACAATTTTGGGTGTTTCTGTTGAATTCACTAGCTTCTTTAAGAAGCGGAGAATAAAGTGTAAAGCATCAGTCCAATGGGTAATTTTTTTACGGTTGAATGTTCTTCTTGATTATTACATTCTTTTTTATTTTGTCTTTGAATTTTGAGTTCTTGAATACTCTCTTTATTGGTAGTTTCTTGATTATTCTAGTACTTTGAACTTTCGGGAGAAAGGTTTCTTTGTCAACCTGTTTATACGTATTTAGATTTTCCCTTCTTGATTTTCTTTTAATTGTTTGATGTGAAAGATGGGTGTGCAATTATCACTGCTTCCTGCGGTGTATTATTTCAGTGTACTGGTTCTTGAACTATTCAACCAATAGCTACTAGTTCTTCATTGAAAAGTAGTTTCTTGATTTATAAGTTTGGAAACCATTGAGAATTTTGGGTATTTTTGTTGACTTCGCTAGCTTCTTTGGATAATCATGCCTTGAGAAGTCGTGGATAAAGGGTAAATCATCAGTCCAATGGACTGTTTTTTACGGTTCAATGTTATTCTCATATTGCCTCATTATATCTTTTAAGGTTTTATCTCAGCCATTGGTCATTCTGTTTAAAGGCATGCTGATGAATTTGATGGAGTAATGATTAAGACAGCTAATGTAATATGGAAACAAAGAAAAAAAAAAGAATATCAAGAATCTCTGTTCAGTCCCCTCCATGGGAACTTTGTTATGTAAGAAACTAGTAATCTTCATCTACCTCATTGAGTATTTGATTTTTGTGAAGCATCATCTCTCTCCAATTAGATAATAAGTTTTGATTTTGGTTGTAGATCTTGTCATTTGCTTACTTTCATGCATATAGCTAGCCGAGGCCTTAGGTGAATTCTTTCACTCACTATGTTAAAATAGGACCCTTCTCCATGAAAAACACTTGTGCTCACAAAATTGTCCATATTGTCTATGAAACTTGTTCTTTTGAATGATTATCAAGTTAATTGCCATTGGATCCATACATCGATTAAATTTTCTGATCTCGAGTTACTCTTCTTTTCTACCCCAAGTGATAAAAAAAATTAGTTTGATGTTACTATCCTTTAGGAAATGAGTCTTTGATTGTGTAGCACCTTTTTCCTTTGTCATATTTTCTCAATGACTTCTTCTCCTTTTCATATTCCTTTACCCTCGAAATATATTAGGTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAGGTGATTGAAATTTTATATACATACGAATATCTACTCTCAAAGCAGATTTCACTGGGCATGTTGTTGTTGTAAAACACTTCCCTTTAAGTCGTGGTAACTGACTCCCAGAACTGATAATTTTATTGATAAACTGACAATCATTTGTAGTATGCAAAACCGAATT</genome_strand>
        <mrna_strand>GAAAAAATGGCGTTAAGGCTTACCCCCTCTCTACTGCCCACTTATAATCATGGAAAACCCAAACTAGCTACACTTTTCAATTCAAGATCCAAATTATCCTTTCAATTTCTTTCAAAACCCTTCAGAATCTTGGAGTTTGAATCAAGAAAAACGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGT-----A-TCGGATACCCAATGGAGGAAAGTGTCGGCTGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAGTCATCAAGAAAAGCGGCTGTGGATGTTTTTGCTGAGATGGGTGTTCAAGTTACCGTTGAAGACTTTGTGCCTTTCATGGGCATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAAGATTTGATACTGAGGCTGCCAAGAAGAGGTTTTTTGAGATATATTTATTAAAG...................................................................................................................................................TATGCAAAACCGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738700" ref_strand="+" ref_description="SGN-E738700 [LC14CF09]">
      <seq>cgcatggcgttaaggcttacaccttttctactgcccacttatggaaaacccaaactagctgcacttttcaattcaagatccgaattatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgtttgatatggatggtgtgctctgcaatagtgaggaatcgtcaagaaaagcggctgttgatgtttttgctgagatgggtgttcaagtaaccgttgaagactttgtgcctttcatgggcatgggtgaagcaaacttcttaggtggtgttgctgctgctaagggtgttgaaggatttgataccgaggctgcaaagaagaggttctttgagatatatttatcaaagtatgcaaaaccgaattctggcattggtttccctggtgcctttgaacttgtctctcagtgtaaaagcagtggtctcaaagttgctgttgcatctagtgctgaccggattaaagttgatgcaaacttggctgcagccggtttaccaataacgatgtttgatgcaattgtatcagctgatgcttttaaaaatttgaagcctgctcctgatattttcttggctgcatcacggattcttgatgttcccactagtgagtgtattgtgattgaaaatgcactagctggagtacaagctgccaaagctgcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91745" stop="95946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92042" g_stop="92393" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92394" i_stop="93781" i_length="1388">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93782" g_stop="93882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="453" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93883" i_stop="94029" i_length="147">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94030" g_stop="94086" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="510" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94087" i_stop="94173" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94174" g_stop="94268" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="605" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94269" i_stop="95013" i_length="745">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95014" g_stop="95113" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="705" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95114" i_stop="95591" i_length="478">
            <donor d_prob="0.531" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95592" g_stop="95646" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="760" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E738700" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92042" e_stop="92393"/>
          <exon e_start="93782" e_stop="93882"/>
          <exon e_start="94030" e_stop="94086"/>
          <exon e_start="94174" e_stop="94268"/>
          <exon e_start="95014" e_stop="95113"/>
          <exon e_start="95592" e_stop="95646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGTTAAGGCTTACACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGGGTAAAATCTTTGTTCTTTCTTGATTATTACATTCTTTTTATTTATGTTCTTGGGAAGGTTTCTTTGTCAATTTGCTTTGTATTTTCCCTTCTTGATTTTCTTTCATGTGAAAGATGGGTATGAAATTATCATCGGTTCGCGGTGTACTATTTAAGGCTACTGATTCTTGATTGAAAAGTAGTTTTTTGATTTATATGTTTGGGAACGACAATTTTGGGTGTTTCTGTTGAATTCACTAGCTTCTTTAAGAAGCGGAGAATAAAGTGTAAAGCATCAGTCCAATGGGTAATTTTTTTACGGTTGAATGTTCTTCTTGATTATTACATTCTTTTTTATTTTGTCTTTGAATTTTGAGTTCTTGAATACTCTCTTTATTGGTAGTTTCTTGATTATTCTAGTACTTTGAACTTTCGGGAGAAAGGTTTCTTTGTCAACCTGTTTATACGTATTTAGATTTTCCCTTCTTGATTTTCTTTTAATTGTTTGATGTGAAAGATGGGTGTGCAATTATCACTGCTTCCTGCGGTGTATTATTTCAGTGTACTGGTTCTTGAACTATTCAACCAATAGCTACTAGTTCTTCATTGAAAAGTAGTTTCTTGATTTATAAGTTTGGAAACCATTGAGAATTTTGGGTATTTTTGTTGACTTCGCTAGCTTCTTTGGATAATCATGCCTTGAGAAGTCGTGGATAAAGGGTAAATCATCAGTCCAATGGACTGTTTTTTACGGTTCAATGTTATTCTCATATTGCCTCATTATATCTTTTAAGGTTTTATCTCAGCCATTGGTCATTCTGTTTAAAGGCATGCTGATGAATTTGATGGAGTAATGATTAAGACAGCTAATGTAATATGGAAACAAAGAAAAAAAAAAGAATATCAAGAATCTCTGTTCAGTCCCCTCCATGGGAACTTTGTTATGTAAGAAACTAGTAATCTTCATCTACCTCATTGAGTATTTGATTTTTGTGAAGCATCATCTCTCTCCAATTAGATAATAAGTTTTGATTTTGGTTGTAGATCTTGTCATTTGCTTACTTTCATGCATATAGCTAGCCGAGGCCTTAGGTGAATTCTTTCACTCACTATGTTAAAATAGGACCCTTCTCCATGAAAAACACTTGTGCTCACAAAATTGTCCATATTGTCTATGAAACTTGTTCTTTTGAATGATTATCAAGTTAATTGCCATTGGATCCATACATCGATTAAATTTTCTGATCTCGAGTTACTCTTCTTTTCTACCCCAAGTGATAAAAAAAATTAGTTTGATGTTACTATCCTTTAGGAAATGAGTCTTTGATTGTGTAGCACCTTTTTCCTTTGTCATATTTTCTCAATGACTTCTTCTCCTTTTCATATTCCTTTACCCTCGAAATATATTAGGTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAGGTGATTGAAATTTTATATACATACGAATATCTACTCTCAAAGCAGATTTCACTGGGCATGTTGTTGTTGTAAAACACTTCCCTTTAAGTCGTGGTAACTGACTCCCAGAACTGATAATTTTATTGATAAACTGACAATCATTTGTAGTATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAGGTATGTATAACCTGTGATGTGATGACTATATGTGGTCTTGCTCTTTCTGTTTATGTTTCTTATTAATTTGGTGATATGGTACGCCAGTGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGATGTGAGTTAACAAATGCGCTTTAGCTGTAAATAGTTGCTTCTCTTTCCTATTATAATTGGCATTCAAGAAACACTGGATTGTACTAACTCAGACCAAGTTTTTTAAAAAACCACTGGATTGTACTGAATCAGACATAGCAAGAACTTTATTTACTTAAAGAATCAGTATAGATATGTTGTATTTTAAAGAACTAACAAAATCTGTTAGTCATGGAATCAGGCATTCAGACTCCAAAGGGTGTGATCTTATATGGTCCTGGGCAATCCTCCCCTTATGAGCTACTTTTGTTGTTGAGTTAGGACAGTCCTTCCATTGTGAGCTAACTTTTATTGTTGAGTTAGCCCCAGTGTGCATTCCTTTACACGGTATCAAAGCTAAACCTCATTGATTCCTGTTGTTATGTTGCTCTTTTTCAATATTTATCCCCGTGTTACGTTCTCCGCATGTCCTTGGGGGGGGGGTCTCCTTATATGGTTCTAGGAATCCTCCCCTTACAAGCTAACTTTTTGTGGTTGAGTTACAAGGTCCATTTCTTTATGGTATTTATGCAAACACACAAACTATGCATTGGTTGATAATGTAGTTTGCAAGGACATAGTAGTTTATTGAGGTTAAAGTGTACAACTCGGATGAAAAACGCAGGTGTGCAGTGAAATAATTGGAAGCTCCCATCCTCCCTCGCCTTTGTCTTTAGTTATCCTTCTATGTGTATTTGACTTCATATTCTTTTTCTTTGATTTGACAGGTTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATGTTCCCACTAGTGAGGTAGTTTCCAGGATGTGCAATGCTGCTTTGCACACCCATCACAATTTTTTCTTTTTAGACACTTAGTTGTGGGTAGTATATGGTGCTTATATGATGAGAAACTTATAGCCAACTAAGATATTACTGAGGTTTACATTCACGTTCTGTTTACCTAAAAGTTCCCTATAATTCATTAATGACTGTAATAATCAGATGAAGTTAGCTGGAAAACAAAATTTAAGCAAAGAAGATACTAAAAACTTGATAAATATGTTGGCAACTTTTATGTTGAAAATTATATTTCTGGATGGGAAATAGATGCGCAATTGCCATTCTATCAGTCAGAACAGATTTTCTAAATATGGGTATAAAAATGGGGGGTGCATTATGAATTGCTGAAGGTTCATGTTCGAGGATGATGAAGTTTTGAAGTGTTAAGTAGATCAGTGTCCTGTTTGTCGACCTTGGTAGGCATTATCATAATCCTCTATGTTGACAGTGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAA</genome_strand>
        <mrna_strand>CGCATGGCGTTAAGGCTTACACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAG...................................................................................................................................................TATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAG.......................................................................................TGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATGTTCCCACTAGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTGTGATTGAAAATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705762" ref_strand="+" ref_description="SGN-E705762 [FA28AC08]">
      <seq>tggcgttaaggcttacaccttttctactgcccacttatggaaaacccaaactagctgcacttttcaattcaagatccgaattatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgtttgatatggatggtgtgctctgcaatagtgaggaatcgtcaagaaaagcggctgttgatgtttttgctgagatgggtgttcaagtaaccgttgaagactttgtgcctttcatgggcatgggtgaagcaaacttcttaggtggtgttgctgctgctaagggtgttgaaggatttgataccgaggctgcaaagaagaggttctttgagatatatttatcaaagtatgcaaaaccgaattctggcattggtttccctggtgcctttgaacttgtctctcagtgtaaaagcagtggtctcaaagttgctgttgcatctagtgctgaccggattaaagttgatgcaaacttggctgcagccggtttaccaataacgatgtttgatgcaattgtatcagctgatgcttttaaaaatttgaagcctgctcctgatattttcttggctgcatcacggattcttgatgttcccactagtgagtgtattgtgattgaagatgcactagctggagtacaagctgccaaagctgcaaaaatgagatgtatagcagtgacgacaacactatcagaagatactctaaatgcggcggagccatcactcatcagaaaggagataagtgatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91746" stop="96261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92046" g_stop="92393" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92394" i_stop="93781" i_length="1388">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93782" g_stop="93882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="449" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93883" i_stop="94029" i_length="147">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94030" g_stop="94086" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="506" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94087" i_stop="94173" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94174" g_stop="94268" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="601" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94269" i_stop="95013" i_length="745">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95014" g_stop="95113" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="701" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95114" i_stop="95591" i_length="478">
            <donor d_prob="0.531" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95592" g_stop="95650" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="760" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95651" i_stop="95875" i_length="225">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95876" g_stop="95961" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="846" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E705762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92046" e_stop="92393"/>
          <exon e_start="93782" e_stop="93882"/>
          <exon e_start="94030" e_stop="94086"/>
          <exon e_start="94174" e_stop="94268"/>
          <exon e_start="95014" e_stop="95113"/>
          <exon e_start="95592" e_stop="95650"/>
          <exon e_start="95876" e_stop="95961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGTTAAGGCTTACACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGGGTAAAATCTTTGTTCTTTCTTGATTATTACATTCTTTTTATTTATGTTCTTGGGAAGGTTTCTTTGTCAATTTGCTTTGTATTTTCCCTTCTTGATTTTCTTTCATGTGAAAGATGGGTATGAAATTATCATCGGTTCGCGGTGTACTATTTAAGGCTACTGATTCTTGATTGAAAAGTAGTTTTTTGATTTATATGTTTGGGAACGACAATTTTGGGTGTTTCTGTTGAATTCACTAGCTTCTTTAAGAAGCGGAGAATAAAGTGTAAAGCATCAGTCCAATGGGTAATTTTTTTACGGTTGAATGTTCTTCTTGATTATTACATTCTTTTTTATTTTGTCTTTGAATTTTGAGTTCTTGAATACTCTCTTTATTGGTAGTTTCTTGATTATTCTAGTACTTTGAACTTTCGGGAGAAAGGTTTCTTTGTCAACCTGTTTATACGTATTTAGATTTTCCCTTCTTGATTTTCTTTTAATTGTTTGATGTGAAAGATGGGTGTGCAATTATCACTGCTTCCTGCGGTGTATTATTTCAGTGTACTGGTTCTTGAACTATTCAACCAATAGCTACTAGTTCTTCATTGAAAAGTAGTTTCTTGATTTATAAGTTTGGAAACCATTGAGAATTTTGGGTATTTTTGTTGACTTCGCTAGCTTCTTTGGATAATCATGCCTTGAGAAGTCGTGGATAAAGGGTAAATCATCAGTCCAATGGACTGTTTTTTACGGTTCAATGTTATTCTCATATTGCCTCATTATATCTTTTAAGGTTTTATCTCAGCCATTGGTCATTCTGTTTAAAGGCATGCTGATGAATTTGATGGAGTAATGATTAAGACAGCTAATGTAATATGGAAACAAAGAAAAAAAAAAGAATATCAAGAATCTCTGTTCAGTCCCCTCCATGGGAACTTTGTTATGTAAGAAACTAGTAATCTTCATCTACCTCATTGAGTATTTGATTTTTGTGAAGCATCATCTCTCTCCAATTAGATAATAAGTTTTGATTTTGGTTGTAGATCTTGTCATTTGCTTACTTTCATGCATATAGCTAGCCGAGGCCTTAGGTGAATTCTTTCACTCACTATGTTAAAATAGGACCCTTCTCCATGAAAAACACTTGTGCTCACAAAATTGTCCATATTGTCTATGAAACTTGTTCTTTTGAATGATTATCAAGTTAATTGCCATTGGATCCATACATCGATTAAATTTTCTGATCTCGAGTTACTCTTCTTTTCTACCCCAAGTGATAAAAAAAATTAGTTTGATGTTACTATCCTTTAGGAAATGAGTCTTTGATTGTGTAGCACCTTTTTCCTTTGTCATATTTTCTCAATGACTTCTTCTCCTTTTCATATTCCTTTACCCTCGAAATATATTAGGTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAGGTGATTGAAATTTTATATACATACGAATATCTACTCTCAAAGCAGATTTCACTGGGCATGTTGTTGTTGTAAAACACTTCCCTTTAAGTCGTGGTAACTGACTCCCAGAACTGATAATTTTATTGATAAACTGACAATCATTTGTAGTATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAGGTATGTATAACCTGTGATGTGATGACTATATGTGGTCTTGCTCTTTCTGTTTATGTTTCTTATTAATTTGGTGATATGGTACGCCAGTGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGATGTGAGTTAACAAATGCGCTTTAGCTGTAAATAGTTGCTTCTCTTTCCTATTATAATTGGCATTCAAGAAACACTGGATTGTACTAACTCAGACCAAGTTTTTTAAAAAACCACTGGATTGTACTGAATCAGACATAGCAAGAACTTTATTTACTTAAAGAATCAGTATAGATATGTTGTATTTTAAAGAACTAACAAAATCTGTTAGTCATGGAATCAGGCATTCAGACTCCAAAGGGTGTGATCTTATATGGTCCTGGGCAATCCTCCCCTTATGAGCTACTTTTGTTGTTGAGTTAGGACAGTCCTTCCATTGTGAGCTAACTTTTATTGTTGAGTTAGCCCCAGTGTGCATTCCTTTACACGGTATCAAAGCTAAACCTCATTGATTCCTGTTGTTATGTTGCTCTTTTTCAATATTTATCCCCGTGTTACGTTCTCCGCATGTCCTTGGGGGGGGGGTCTCCTTATATGGTTCTAGGAATCCTCCCCTTACAAGCTAACTTTTTGTGGTTGAGTTACAAGGTCCATTTCTTTATGGTATTTATGCAAACACACAAACTATGCATTGGTTGATAATGTAGTTTGCAAGGACATAGTAGTTTATTGAGGTTAAAGTGTACAACTCGGATGAAAAACGCAGGTGTGCAGTGAAATAATTGGAAGCTCCCATCCTCCCTCGCCTTTGTCTTTAGTTATCCTTCTATGTGTATTTGACTTCATATTCTTTTTCTTTGATTTGACAGGTTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATGTTCCCACTAGTGAGGTAGTTTCCAGGATGTGCAATGCTGCTTTGCACACCCATCACAATTTTTTCTTTTTAGACACTTAGTTGTGGGTAGTATATGGTGCTTATATGATGAGAAACTTATAGCCAACTAAGATATTACTGAGGTTTACATTCACGTTCTGTTTACCTAAAAGTTCCCTATAATTCATTAATGACTGTAATAATCAGATGAAGTTAGCTGGAAAACAAAATTTAAGCAAAGAAGATACTAAAAACTTGATAAATATGTTGGCAACTTTTATGTTGAAAATTATATTTCTGGATGGGAAATAGATGCGCAATTGCCATTCTATCAGTCAGAACAGATTTTCTAAATATGGGTATAAAAATGGGGGGTGCATTATGAATTGCTGAAGGTTCATGTTCGAGGATGATGAAGTTTTGAAGTGTTAAGTAGATCAGTGTCCTGTTTGTCGACCTTGGTAGGCATTATCATAATCCTCTATGTTGACAGTGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAGGTATTTGCGTCTGAGTGCCTTTTCTTTATATAGGTGATTTATATACACTTGTTCAAAGTTGTTGGTATCACCAACCCTACTTGAACTTTTCTTCACTTGTTGCGTGTGTCAACTTAATCAGTAATCTGTATCAGCATCATTCTAATGTACCTCTTTGCCTCTGTTTTTAGTGATCATTTTGATTCCGTTATTTCTACATTCTTAAGTATGTTGACTTACTTGCAGATGTATAGCAGTGACGACAACACTATCAGAAGATACTCTAAATGCGGCGGAGCCATCACTCATCAGAAAGGAGATAAGTGATATTT</genome_strand>
        <mrna_strand>TGGCGTTAAGGCTTACACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAG...................................................................................................................................................TATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAG.......................................................................................TGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATGTTCCCACTAGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAG.................................................................................................................................................................................................................................ATGTATAGCAGTGACGACAACACTATCAGAAGATACTCTAAATGCGGCGGAGCCATCACTCATCAGAAAGGAGATAAGTGATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733522" ref_strand="+" ref_description="SGN-E733522 [LB10BA03]">
      <seq>cgttaaggcttacaccttttctactgcccacttatggaaaacccaaactagctgcacttttcaattcaagatccgaattatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgtttgatatggatggtgtgcacttcagaagatcttctgcttcaccaaccaccggcagagtttattgcaaggtatactattgcaaagaagatgaggtttgcttgtaccagccattgacctttgaagtaccatttcaagaggtaaatccagattttgcccctgccatgatcacacttgcttttgatgtgaagccaaaaacatccccaactagcttacagattccggctaggtaatggattcatcgtgagaatacgtattacttaatcatgattacttgataataaatgaatgtatatagaatgacacatcacgtttgtgcttcacattcaattcaagatattaaaaagaaattgatacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91749" stop="112716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92049" g_stop="92287" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92288" i_stop="111340" i_length="19053">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111341" g_stop="111394" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="293" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111395" i_stop="112129" i_length="735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112130" g_stop="112416" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="580" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112417" i_stop="112470" i_length="54">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112471" g_stop="112481" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="591" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E733522" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92049" e_stop="92287"/>
          <exon e_start="111341" e_stop="111394"/>
          <exon e_start="112130" e_stop="112416"/>
          <exon e_start="112471" e_stop="112481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTAAGGCTTACACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGGGTAAAATCTTTGTTCTTTCTTGATTATTACATTCTTTTTATTTATGTTCTTGGGAAGGTTTCTTTGTCAATTTGCTTTGTATTTTCCCTTCTTGATTTTCTTTCATGTGAAAGATGGGTATGAAATTATCATCGGTTCGCGGTGTACTATTTAAGGCTACTGATTCTTGATTGAAAAGTAGTTTTTTGATTTATATGTTTGGGAACGACAATTTTGGGTGTTTCTGTTGAATTCACTAGCTTCTTTAAGAAGCGGAGAATAAAGTGTAAAGCATCAGTCCAATGGGTAATTTTTTTACGGTTGAATGTTCTTCTTGATTATTACATTCTTTTTTATTTTGTCTTTGAATTTTGAGTTCTTGAATACTCTCTTTATTGGTAGTTTCTTGATTATTCTAGTACTTTGAACTTTCGGGAGAAAGGTTTCTTTGTCAACCTGTTTATACGTATTTAGATTTTCCCTTCTTGATTTTCTTTTAATTGTTTGATGTGAAAGATGGGTGTGCAATTATCACTGCTTCCTGCGGTGTATTATTTCAGTGTACTGGTTCTTGAACTATTCAACCAATAGCTACTAGTTCTTCATTGAAAAGTAGTTTCTTGATTTATAAGTTTGGAAACCATTGAGAATTTTGGGTATTTTTGTTGACTTCGCTAGCTTCTTTGGATAATCATGCCTTGAGAAGTCGTGGATAAAGGGTAAATCATCAGTCCAATGGACTGTTTTTTACGGTTCAATGTTATTCTCATATTGCCTCATTATATCTTTTAAGGTTTTATCTCAGCCATTGGTCATTCTGTTTAAAGGCATGCTGATGAATTTGATGGAGTAATGATTAAGACAGCTAATGTAATATGGAAACAAAGAAAAAAAAAAGAATATCAAGAATCTCTGTTCAGTCCCCTCCATGGGAACTTTGTTATGTAAGAAACTAGTAATCTTCATCTACCTCATTGAGTATTTGATTTTTGTGAAGCATCATCTCTCTCCAATTAGATAATAAGTTTTGATTTTGGTTGTAGATCTTGTCATTTGCTTACTTTCATGCATATAGCTAGCCGAGGCCTTAGGTGAATTCTTTCACTCACTATGTTAAAATAGGACCCTTCTCCATGAAAAACACTTGTGCTCACAAAATTGTCCATATTGTCTATGAAACTTGTTCTTTTGAATGATTATCAAGTTAATTGCCATTGGATCCATACATCGATTAAATTTTCTGATCTCGAGTTACTCTTCTTTTCTACCCCAAGTGATAAAAAAAATTAGTTTGATGTTACTATCCTTTAGGAAATGAGTCTTTGATTGTGTAGCACCTTTTTCCTTTGTCATATTTTCTCAATGACTTCTTCTCCTTTTCATATTCCTTTACCCTCGAAATATATTAGGTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAGGTGATTGAAATTTTATATACATACGAATATCTACTCTCAAAGCAGATTTCACTGGGCATGTTGTTGTTGTAAAACACTTCCCTTTAAGTCGTGGTAACTGACTCCCAGAACTGATAATTTTATTGATAAACTGACAATCATTTGTAGTATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAGGTATGTATAACCTGTGATGTGATGACTATATGTGGTCTTGCTCTTTCTGTTTATGTTTCTTATTAATTTGGTGATATGGTACGCCAGTGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGATGTGAGTTAACAAATGCGCTTTAGCTGTAAATAGTTGCTTCTCTTTCCTATTATAATTGGCATTCAAGAAACACTGGATTGTACTAACTCAGACCAAGTTTTTTAAAAAACCACTGGATTGTACTGAATCAGACATAGCAAGAACTTTATTTACTTAAAGAATCAGTATAGATATGTTGTATTTTAAAGAACTAACAAAATCTGTTAGTCATGGAATCAGGCATTCAGACTCCAAAGGGTGTGATCTTATATGGTCCTGGGCAATCCTCCCCTTATGAGCTACTTTTGTTGTTGAGTTAGGACAGTCCTTCCATTGTGAGCTAACTTTTATTGTTGAGTTAGCCCCAGTGTGCATTCCTTTACACGGTATCAAAGCTAAACCTCATTGATTCCTGTTGTTATGTTGCTCTTTTTCAATATTTATCCCCGTGTTACGTTCTCCGCATGTCCTTGGGGGGGGGGTCTCCTTATATGGTTCTAGGAATCCTCCCCTTACAAGCTAACTTTTTGTGGTTGAGTTACAAGGTCCATTTCTTTATGGTATTTATGCAAACACACAAACTATGCATTGGTTGATAATGTAGTTTGCAAGGACATAGTAGTTTATTGAGGTTAAAGTGTACAACTCGGATGAAAAACGCAGGTGTGCAGTGAAATAATTGGAAGCTCCCATCCTCCCTCGCCTTTGTCTTTAGTTATCCTTCTATGTGTATTTGACTTCATATTCTTTTTCTTTGATTTGACAGGTTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATGTTCCCACTAGTGAGGTAGTTTCCAGGATGTGCAATGCTGCTTTGCACACCCATCACAATTTTTTCTTTTTAGACACTTAGTTGTGGGTAGTATATGGTGCTTATATGATGAGAAACTTATAGCCAACTAAGATATTACTGAGGTTTACATTCACGTTCTGTTTACCTAAAAGTTCCCTATAATTCATTAATGACTGTAATAATCAGATGAAGTTAGCTGGAAAACAAAATTTAAGCAAAGAAGATACTAAAAACTTGATAAATATGTTGGCAACTTTTATGTTGAAAATTATATTTCTGGATGGGAAATAGATGCGCAATTGCCATTCTATCAGTCAGAACAGATTTTCTAAATATGGGTATAAAAATGGGGGGTGCATTATGAATTGCTGAAGGTTCATGTTCGAGGATGATGAAGTTTTGAAGTGTTAAGTAGATCAGTGTCCTGTTTGTCGACCTTGGTAGGCATTATCATAATCCTCTATGTTGACAGTGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAGGTATTTGCGTCTGAGTGCCTTTTCTTTATATAGGTGATTTATATACACTTGTTCAAAGTTGTTGGTATCACCAACCCTACTTGAACTTTTCTTCACTTGTTGCGTGTGTCAACTTAATCAGTAATCTGTATCAGCATCATTCTAATGTACCTCTTTGCCTCTGTTTTTAGTGATCATTTTGATTCCGTTATTTCTACATTCTTAAGTATGTTGACTTACTTGCAGATGTATAGCAGTGACGACAACACTATCAGAAGATACTCTAAATGCGGCGGAGCCATCACTCATCAGAAAGGAGATAAGTGATATTTCACTTGAAGATATCCTCAATGGTGGCTCTGGTAGCCATAGTATGTAGTTCACCGACATGTTAAGAACTTCCCTTTCATGTACCATTTACAAATGTAGAATACTGAAGCTCTTTTTTTTTTTTTTTTATGGAAAAACTTGCGAGTAAGCTCTTTTTTGTAATGACTGTAATTTGTTGAAGGATGTCCTGTTCTCTGTTCCCTTAAGCTGTATGCTTTAGCTGCTAACTCAGTTAATGGAAATTTTCTAGTTCTAGTGTTCCTCTAACATATCATATGTAGTTAATAGTGGCTTCCTTTCTATGCTTACTATAAAATGAATCTAATGATGAAAAACAATGCAGATGTGATGGTGCAGGAATCTCAATCCATTAACGATCTAGCTCTCTCTTTTCCTGAGCCCAATATGACAGGGAGTATCACAGAGCTGGATAATTATGTAACAAGTGGTGCCATATCCTCGATGGGAGGGTAAGAGCGATTCAATATATGATCATCTGCATCATCAAGACCGCTTTTGATATCTAATACCTCAAATTGCTGTATGCATTCATAGATTCATCTTTTTTTCCTTCTTTTTCTCTTTTCCTCTTTGTCTATCTGAAATTATTTTCTTAAACTTTAACTGGATTAAGTTGAATTGCTAAGAACAGTCCATACTGGTGATTTACATCCTTATCAATCTATTTTATGGCATGATGTATAATCACTAAGTTACATGCTTTTTTTTGCTGCATGTAGGAACAAAAAGTCAAATATGCTTAGACTGACATGAATAATACTCGTGCAAATGAAATTCTCTCGTTTGCAAAGTGGAATACCTTTATCCCCCAAAAGGGTCCATATGCCTTTATGAGATGGCCATTTTAGGGCATTTGGTAATTGGTATAATGTTGTCATGAGGTTGCAGAAATAATTTATGGACAGGGTGCAGGTTACCAGACGAAATGTTGTTAGATATGGAAGTTTAGGAATTGCTGCATCCTGTCTCCTCTTTACTATTACAAACTGGAAGGTATATAATTTAATAAAGAAAGCATAAGGTATTTTTTTAATTTATTTTGGTTTTCATGTTCGCAAGCTCTGCTGTTCTTATGCAGGCAATGCAGTATGCATCTCCAAAAGCTATCTGGAACTTGTTGTTCGGCACAGGCAATCCTCCTTTTGAACAGAAAGAAGGTCTACCCCCTCTTACAATGAAGTATTTGTTCTCTTCTCTTCATTTTCATTGTTGTTCCATTCTTCTTGTTGTATGGAACTTCCCTTGATGACATTATTTTTTCTCTTTTTTCTTTTGGGCACATTTCTAATGTGATTTTTATAAATTCTGTATATCAAGTATGGGCTACTTTTTCTTCTTTTCTTTTTCGGTGATATTTGAGATAATTGAAGGAGATCTATTTTTTTTTTGTCTATTGCCCCTGCAGATGCGTCCAGTTCACAGAGGATTCAACAATTTGTAAACTATATATCTGATGTGGATGCCAGGTAACAGAAGTTTTTCATGTAAACTGAAACCTTTTTTTGCTTTATAAATTAAGAAGGTTGCAGTTTTCCTAAATTTATAAGTTAGTATCGTATATATGTTGCATGCTTTCTGGCATCTTTTGATATACTTCTCTTTAATTGTTCTTGGATTCCTAACTTGTTTTTTGATCATGTTTAATATTCTGCATTTTGTTAGGAAATCTACGACTATCGTGCCCGAGTTCCCATCTAAACTTGATTGGCTGAATACAAGCCCCCTTCAGCTAGGCAGGGTAAATACATAATTTCATATTTCAATTCTGCTCTTTTGGCAACTTTATTTCTTTTTCTTTTCGCTTATTTTCATATATGTGCATATTGGTGTTCTTTTTTCCGTTCTCTAGTCTTCATGCAAATTTTATTCTGGGAATTTTCGGTTGTCTACTGCTTTCTAATTGATGTTTCCTATCGACTACGTGTGTGTAAAATACTTCAAACTTGGAGAGGAATTTCTCCCAAATATAATATTATGTTGTTTCATAATACACCATTCTATTGTAATGGATTTCTACACACTATCCTTTTGAACAATGTTAAGAATCTTTTGACAATGACATTGGCTGCAAAAAAACTTTTAGTGATCGGTACCTTTTCTTTTTTAAATAGTGGTGGTTGGGCTATAGCGTGTGGCGCACCTTGACTATTCCATCGGGTACCCGCTATCTCCCACCACACAAATACTGGGTAATTCTGCCCATCAAGGCTTTAAGCAGATGGGAGACAACCATGGATACTTTTATCATCTATGAATTTGAAAATTTTCTAATATGCTGAATAGTGCTTTTAATCTTATTGTTTCTTGGAGGTATGTTTGTAAGTTGCACATACTAGAAAATGGAAAAAGGAGTAGTTCTGGATGATATATCCATGCTATGCACTCGTTCCCTGAAACATTTCTATGTTTGTGCAGGATTTGAAAGGAAAAGTCGTTCTTTTGGACTTCTGGACTTATTGCTGCATTAACTGTATGCATGTACTGCCAGATCTGGAGTTTCTGGAGAATAAATATAAAGATAAGCCTGTAAGATTGTCATTCATAGCTTAGGGTTGCCATTTCAGCTTTATTGGTTATCTCATGAAATGATATTCTGTCTCTATAACAAGTTGATCATCTGAGATGTTACCCCAATCATTTTTCTAAAATTCTTTCCTGAAAATTCTCATAATTACGCTAATCAATATTCTACTAATTCTGGCAGAAGCAAGCACATGCATACTATAGTTCTGTTGGAACTACATACAATATGAGGTTCTCATTAGATAGGGGAAGTGGAATTAAAAAGTCACGGCCAAGTTAGGTTAGGATGTGTTTAGCTGGTTTAAACTTCGCTCAAAATTCAATTAGTAAAATTCATTTAGTAAGAAATGTTGCTAAAATGTAGGAATGTTATGATCAAGCAGAACTTTTATTATACTAACCAAATGCTGTCTAGATTGCAATCCCATGGGGTTTGTCTTTGTTGATATCACATCTGTATATTCTTCTGTTTGGTAAATTCTATAATTAATTTGTTGTTGTTTTACTTTGGCTTTAGATTACTCTGAAATCCAGACAACAATCTATTAGTTTATTCTATAATATTCCGCTGTACCCACTATTTATTATCTATAACATCTTCACAGAAGAATAGGCATGAAATGAGTTTTGCAGATTGCACGAATGCTGTCAAAAGGAGAAAGAAATGTCATAAGATTTAGCTTTCAGTTGGGCTAATCTGTGAACTTTCTGAGTTAATACTGACAGGTCAAACCAATATAGTCACCTCAAATAGTTGTTTCATACCGTGGCTGATCCAGGATTTTCACCATGGGGGTTTGAAAATAAAACAGCTTGGGATTTGAACTTGGAACCTCAAAATGAATTAAGTACTTTTATCCACAGTTGCATCTGAAGGTTTGCTTACACACTTCTAACCATAGTTGTAGCTAATTCATCAAACATTAGTTTTGCAGTTTGTGGTTGTGGGGGTGCATTCAGCTAAATTTGACAACGAGAAGGACCTTGAAGCCATCCGTAGTGCTGTATTACGCTATGGAATCACTCATCCAGTAAGTACTTATTCAAGAGCTGAACTATTACTGATTTTAGTGTTGAATGTCTCTTTACCACAATCTATCTGCTTGCTCTTGAATCTATTAGATCCCCAAGAAACGGATGAACATTTGGAAACAACATAAATGTGGAGAGAATTTAGAGCATCCAGATTAGGTTATATATTACTTCTTTTCGGTAGATTAAGGTAGAATGTCCGCTGCTATCTGCACCATACTTGGCTATGTTAAAATTGACATTCCAATCGTTAACACTGTCTTGACAGCCTCTCCCCCACCCTTCTGATCCAATTCAAATTTGTACCATCAAAGCCTCTGGGACTCCATGTATTTAACAGAAGGGAATACTTGCTAATTCACTGTTAATGGTCAAGGATTGCCTGACAATGTATGTAATCAACGTTTCCAATTGAAGCTCTTGTTTATTGCTGAAGTTTATTATTCAGATTGCAGATACTGGTGAATAGAGTAACTTGGAATTTGACATTGTTATCATTTCAAAATATCTGCTTTAGTTTTTAATTGGGGGTGTCTCTCCTTCTTCCCTTCTTTTTTGTATGTTAAGTAGTTTCTTAACCTTCATTGAATGATCAGGTTGTCAATGATGGAGAAATGAATTTATGGCGGGAATTAGGTGTCAATTCATGGCCAACATTTGTTCTTGTCGGGCCAAATGGCAAGCTCTTGGCACAAGTAGCTGGCGAAGGTCATAGAAAGGTTTCTTACAGATTTCCTTTTCTCTTTGATGTTTCATGCATTAGTATATATATATGAATTATTTAACACATTCGTGATGGCACATTTAAGATTAGATGATGGAAAATGGCTCATTTATTAACTTGACACTTGATGTAATTAATTCAATTCTGATATGCCTCTCAAAGTGCATTATCACAGAAAACTTTTGAGAGAATAGGTCATATTTCACTCTCTTTGATGAACTGTGTCACCAGCTCATCTAAAAGCTTAAGTTGTCAAGGAAAATATACTTTTATTTACTTAAAGTTGTCATTAACATGTCCCCTGTCATGTAGGCCGGACTGTTTTTTATTGGCCAAACATGTGGAAACTTTTTTTTTGATAATGGGTAGTGATGAGACTTGAAACTAGGATATTTGTCTACTCTGATACCATGTTGAACTATGTGATCAATTTATCTAAAAATTTGCAAACTATGTGATCAATTCATCTAAAAGTTTGCGATGTTAGAGAAAACCATGTTGAATTATGTGATCAAATCATTATTTTCCCCTTTCTTTGCATACATAACCGAAAGTTTATCCAGAACTTTCTTTGATCAGCCATTGAATCTCAAAAATCAAAACGAATTACTTCCATATGTAAATGCATAAGATGGAAATGTGGAAGGAGGAAAAAAGAATCTTCTGCAAATGTACTCCAAATTGAATGGAAAGATTGACCAGATCATAGCCAGTTCTTTTTGGTAGCTGACAGACCCTTATCTCTGACCTCAATGTGGCATTTCTCTATCATCTGAATTTTGAAAATATGTTTTCTATTATTAGTTTTGTGTAACCCAGGCTAGGAAAGTTTTGACATTTTAGGAAACTAAAAACTAGGTCACCTTTAATCGGAAACAACCTCTCTACCTCTGACGGTAGTGGTAAGGTCTGTGTATACTTTACCCTCCCTAGTTGTGAAAACTAGGTCACCTTTCCTTTATTATGAAACACTATTTTGTGTTTTTGTTTTTATTCTCTTTATCTCTTTTCTATTTCGAAGAAAATACTATAGAAACGTCTAAGCGCCTGCTATTGCCTAATCCGACTTCATAAAAGAATTTCTTTAGGCAGCTACTTATTGGAGTTTCTCCATTTGTCTTATCTTATGGCATGAAATTCCTTCAAATGAGATAATTTGTAACATTCAGTTTCTTGTGCTTTTAGATTATAGCAAATTGCCTCTCACATATTTCTTTCTAATTAATATGATCTGTGGCAGTTGGAAGTGAAGATTATTGACAAGATTTAGCTGTCATTTCGATGTCTTCTGCTTTGGTTTGTAGGATCTTGATAATTTAGTCGAGGCTGCTCTTCTGTTCTATGGTAAGAAGAAGCTCTTGGATAGCAAACCCATTCCCTTGCGCTTGGAGAAAGATAATGATCCCCGCTTGTTAACGTCTCCTTTAAAGTTCCCCGGTAAGCTGGCAGTTGATGTCCTCAACAACCGGCTATTTATATCAGACAGCAATCATAACCGAATAGTAAGTTCTTCTTCTCTCTCCTTTCTGTATTCTCTCTGAATGATTGTTGTATCAGGTATTCAGGTTGCAAAATTTTGAATGTATGAACTGCAAGTAGTTGGTGTCTGTAGCATCAAGGTTTGTTAACCCTTTTTGAGGCTTTCTGGAGTTATGAATTGACCATGGGATTATTGAAGAAGATCAAGTTTGATGTTAATTGCATATTAGTTATCAATAAATGGAGGTATACCTACCTCTGAAAGTAAATGTATTCCCGACACTGGGGTTGCAGAACTTCCATGTCCACATTTACTGATATCTGAAAAAAGTTAAGTGTCAAAGCATGATCATTCATTTTCTAATATTTGCAAGAGGAAGCTACAGAAACAGAATGTATGATGAAAAGTCTAGGGCTATGCAGAAGATAAGATTAATCTTTTTACATTTTATCAGAAGGCAAGGGATAATATCACTTTAGTGTCAGAGCATGATCATTCATATTCTAATGCAGTGTACAGTAATGGTAACTTGGAGATGAAATAAAGAGTATATGCTTAAAAGTTTTTCCTGCTAATGGAGATCGGTGAGTGGTATATTTAAATTAGAACAAAGAATTAATATTTGAAGCCACTGCTAGGGCTGGCGAATATGGTAGAACCAAAATTCACGAGGAAGATGGAAAAAATGCGGAAGAGGATAAGGTAGGGCGCGAATAAGGAAGAGGATAAGAAATGTACATTTTGTTTCTTTTACTCGACTCTTACGGAACTGGTTCCTTCTTCTTTGTGGGAGACTCACAAGTTGTGTAGGAAATTATGTTTTCTTCTAGATACATTCTGGTTCTTCTTTGCTCTCTTCTGAACTTATTCATTCTGTTATTTAGTTCCTTCTTACATTTCCTAGTCTCAAGAACACGGCCATGTTTTCTCGTCTGATACTGTTTTCTTTTCCATACACTATCTCAGTAACTCGGAGTTGTAGTATCACATCTGTTCTGGTCCTTCATGCTTTTGGCCTGTACGAGCCCTAGATCTTAGTCTTCTTTCTATTTCCATGCTCTCTTTATGAGGTGAATGGTAGAATTAGTAATCCCGGACAATTTTCACATGGACAGGTAGTAACTGATCTAGAAGGGAACTTTTTAGTCCAAGTTGGAAGCACAGGAGCAGAGGGTCTTCATGACGGTAACTTTGATGATGCAACATTCAATCGTCCGCAGGTAACTCTTTTAATTTTTCAATTTTTTCCATTTGCAAAATTAATCTAAGATCTTAATTCTTATTATATCTTCAGGGTTTGGCTTACAATGCAAAGAAGAACCTCTTGTATGTGGCAGATACTGAAAATCATGCTTTAAGGTACAGGCAGAAAGGGAATGCCTGTTATTGGGCTAGACATACATGGTTTATTTTCTGAATTCTCCGTTTATACACGTATTTTCCTTGAAGTATAGATGCTTGTGCCCCCATCTTTGAGAAGTTGAGGAGGATAAACTTGAACTTTGATGGGTTTATTGATACTGATTATTGCCGGGGGGAAGGGAACACATGGATTCACCAAGGGTATATTATTTATTTTATCTTTCTTCCTAGAAATTGGAATATTTTGTGCTATAGTGGGTATCTCCTCAGTTTACATTAAGTAGTTTGATGAAACATGGAGATCTTTAGTAAACTTGAGCTGCATATTTTATTAGTCGCAATAGGATACAAGATGGTAAAGTAGTTGTTGAAAGCTACTCATTGTTTGAATATAATGGCCTAAATTTTTTTCTTTTAAATTCATTTAAACTTTGATGCCATTTTTTTAGTTGGAATTGGTATTCCTCAACTCAAGATTACAAAGGCAGAATCTAAATATTTCAAAGCTTGTAACTTTACATTGTTGATAACCACCCCTATAATTTTTATTCTGTACTTTTTAATTAGGTGCTCCTTTTCATTTAATTTTTAGTTTGGTTTTGACCAATCTATTGGTAGCTGACAGAAAAGAGAGACCACATATGTGGATAATAATTGCTTCATTAGGTTTGAAGTTCACTTTAGGAATCTTCATATACGGCGTTTCCAGAACTGGTTGATTTTTCGACAAGGTCAAACTAAACCATGAATAATTGATTACATTTGACTTTTTTTGACGACATGACTTTTTTTGACAGGTCTTCATATCCTTTCCTGGCAAAAAGATTTGGGAAATTTAGTTTTATTAACAGGAGAACTTTAATAGTTGTTCTATTTTTTCCTCAAGTTAGTTCGTACTGTCAAAACAGTAAGAAAAACTAGTGGAAACGAAGATACTTAAAAAGCTTGTTGAAAAGAATGTTCTGGAAACAAAGAACCAGAAGATATTAGAACATAACCACAGAATAAAAAGCAACTGAAATTAAGAAAAAGAAAATGATGAATAAGACATGTTCCACAACTGGTGGGAAACAGGAGTAGAACTACTCACCATAGGGTGGATGCAAGGGGAAAAAGAGAGATTTCTTGAGCTTGGGCGAGGGAGCTGGTAGGCTGGGTTAGCTTGTTTGGTTGGAGTTGACAGGGATCGCCATCAGGCCACGGTGAGATAATGGTCTTGATCTTTTTGCTGATGAAGAATATGTTGGAAATATTAGTGGAGTAAGGATGCGGATAAGTCAAGGAAGGAGAAGGAGCAGGAGAAAATGGATTGGATTGAGGATGAGGGAATACTAAGGAAAATGTTTGCCTTTATCATTAGATTTGGAGGTAAAGTAGTCTTTAAGGACCAAATCCGACTCTTCAAATTAGTATCTCATCCACCGGATGATATGATGCCAAATTACACTGATAAGTTTCCTCAATTCACTCTGGTATACATACATATTCCTTTCCTTTCCTCTATGCTGTCAATTTGGATACTCATTATCATTCTGTAGTCTAAAAGATTAACCTGACAGCCAAAATATCCCCTCTTCCTAAATCATCCTTGTTCCCATTTGAAATTCATTCAAAAACTTTTTTAACTTCTTATTTATATTTGTATTTTGAGAGATGGAAGTTTTTACTTCAATTTCCTTTTTAGTTGGGCTTGATGTGCTTATAGCTTTTTTATGAGATTATAATTTTTCTTTACCTAGATAATTTAAGGAAGCTTTTAGTTTAACCTATTGAGTTCCATTACTGTAGGGTCATTGACTTTGTGAATGAGACAGTGCGGACGCTTGCGGGAAATGGAACAAAAGGTTCTGATTATGAAGGGGGAGGAACTGGAACTGCACAGGCAAGATTGGATTAAATTAAATAATAACTTGGTCATCAACTGGTTCCAGTTAGCTCTAGCTTATCGCATATGTAGTTTTATGCTCTAATTTTATCTCTCTTTAATCAATTTCAAATATATTGTGAATTATCCTTTTTTCCTTGGAACTGAACATCATTGGTCATATTTTCAGCTTCTCAACTCTCCATGGGATGTCTGCTTTGAACCTGAGAATGAAATTGTCTACATCGCAATGGCTGGTCAGCATCAGATCTGGGAACACAAAACATTGGATGGAGTTACAAGAGCTTTCAGTGGGAATGGTTATGAGAGAAATTTGAATGGCTCAAGGTAATGTGTGTGTGTTAGCTTAACTAGAGTTTCAGCAGAACACTGGTTAATTGTGCTAGTTTTTTATATGAGATTGAAGTGTAGTTTATTGATTAATTCTTAAATGCTATGATGCTCACTATCATCATCTGTTTGTCACACTTTCTTTTGTGGTGCTTTTTACTTCTAAACTAGTTTCCAAGCCTTTTTGAAGAAAAGGGTTTCCCCCTTTTTATTAGAAAAAAGATCCATGTGTTAATCTAGCGCGAGGGAGAACCAACTGAGGACCAGATCTTTCACTGATAAACAAAGACAGAAACAAACTGCAGTTCACACTTTTTTGATTCACTGCTTTACACTTGCTCTATAAATCTATCAGCGTAGTCATATTTTAGGACTGCATAGATATGTCTCTTCTTTTGACTTGCCCGTGTTCTAAAAGATCTCTCATATTTATTAGTGATAACAGTAAGAGTTTTTATAGACTGCACTCTTTTGGCATGGTAAGATCAATTTTCTTCTGAAGGTTCCATTATGAATTTGGAACCCATGTTCTGTGGACTTCTAACATTATCATCTAACATAATTCATTGGAACATGAAGAGTACAAAAGCTAACCCACACTCAAAGGAATAGATATCCCTTTTGGTCATGAATCTTGATAATGTGCTCTGGATATGGTTACTATTACTTCCTAGTAACACTTGGTGAAAATAATGGATCTCCATGAATCAGCAGGAGCTTCAGTCAAAAGACAACAGGGATTAAACTAATGTAATTTGGAGAGGAGAAACCGGCTTTGTGCTTTTAGTTTTTGGGTTTTGACTTCTTTCATTGTATCTCTTGTCCTTGTATGTGTTGGTTGTGAGAACATATCCTTTTAGCCACTTACTTTTGACGAACTTGCTGATGTTTACGGATCATCTTCTTCTTGGCCATGGGAAAGCTCTACAAGCACGTCATTTGCACAACCTTCTGGGATTTCCTTGTCACGAGGTAATCTCTTAACAAGACATAAATTGTTCTTTTGAACTGGTCTATAGTTTTTACCTTTTCTTTTGATACAATTTGTTTTACTTTTTATTTTTCTTTTTGATTGTTAGAGCTCAGTATATTATATCTGTATGCTGATCAAAAAATTAATTTAGCAATAAGAGAATGCTGTAAAATAAGTACAAAAGGAGGCTACATTACAAATTATGTAATGAGCTCATGAAGTGAATCATGGCATCTATGTCAGTTGCAATAGCCAGATTGCACCAAAAAAAAAGAAGAAGATATAAGTATTTGATACTAATTACAGATTCAGATTCTCTCTCAAAAACTCTGGCATTCTTTTCTTTCCAAATTAGTCCACCATATATTTGAAGTTTTCCTCTTCACCTTGCCAAGACCTTTCAAGTTGCCAGCATTTAATTACCCATTTACTTGTTTTTTTGTAGATCTTAAGGAGGCATATATTGCTGACAGTGAGAGTAGCTCCATTCGGGCAGTTAATCTAAGAACAGGAGGTTCAAGATCACTGGCTGGTGGTGATCCAGTTATTGCAGAAAACTTGTTTAGGGTAATTTTGTTTGAAGCCAAAGAAACCAGATTTGCATTTCTCTAGTATATTTTAGTCACATTTGTGACAGAAATAAATTTGTTAAAGGAACATTTTTTGTGCAGTTCGGTGACCATGATGGAATAGGCTCTGAAGTACTTCTTCAACATCCATTAGGTGTTTTATGTGGAAAGGATGGTCAAGTTTATATTGCAGATTCTTATAATCACAAGGTACTTGCAGACTAATTTTTTAACAGTTAACATTTGCTCCATATGTGACACAATTTTATGACATCTTATGATAATCTTTAACACACTTCTCCACATATTATAATTAATTTAGTTTGAACTATGATGTGATGTTCATTTGTCAAACTTAACTTCTCAATCACTGTAATATGTGCTTCTACTATTATCAACATATTATTCAAGTGGAAAAGACCAAACAGATATGCTTTGAGAAGACAGACCTCCAATGGAAGAAATACTAAATGTATGCAGTTAACCTGATGCTATTTGCTTTGATTGCCTAACTCCTATCTTAAGTTCTTTTTTTTTTTTTTTTTGTATGTGAGCCATGAATGTACAAATTTGTGATTTTTAAAACATATTAGTCATCTGCAGTCTCCCTATAGCTTTGTTTCATCATTCACTCTCTCTACCTCCATAAGAACTTTTTATTTTGGTACAACACATTTGGTTTTCTTTTTCAAACATTATCTGGATGGTCATAAATTATCTCTAGTTATTTGAACTTGATAGAAGATTTTCGTTTATAACTTACACCTTTGTGTTTAAAAATCTTTTTGTGATTTGGTGGGTTTATGAAAAGTGAAGGAGGAGAAGATAAAAGTGAGAAGGGCCTTTGGGAAGATTGAAACCATGTGGTGAAGGTTGATAGGAGGGTTAATAGCATGTCATCTTACAATTAATATCAAGGCGACAATTTGTCAATAATGTTATGATTGAGATATCAAAGCTAATAAAGATTAGTCTGCTTAACCAGAAATTGGCTTAGTCTGCTTAACTAGAAATTGGCACTTTGGAAGAATTTTGACAAATCATCTAATTTATTAAGACAAAAATTTTATCTGCTGAAATTGTGGTGCCTTATTCCAGATAAGAAACAGTTGCTCGTACGTAGAATAATAGTGAAGTATTAGGTTTATGAAGTTTGTGGCCTTCCCTGCTTCTCCTTTCAAAATCAACTAGTGAGCTTGAAAAGCGATGTTTCATATGATGCTTGTTACGATTTCAAGCTTAAAAGGACTATTTAATGTAACTTATATTTCAATAATGAACTACTTGTTTTGGTACCGTCACAGAAACATCTCAGGTAAGTAAAAACTTTCCTCTTTTGTTTAACTTGCCAGATTAAGAAACTAGATCCAGATAGTAAAAGGGTGACTACATTAGCTGGTGTTGGTCAGGCTGGTTTCAAAGATGGAGCAGCGGTGGCAGCTCAGGTTGGAAAGAGTTCATATATCTTTTCTTGTATCATATTTTGGACATTAGTGTTACATTCTGACATTCATTGCTCCCAGTCATATTTTATGTCCACATGGATGTTACACTTAATAGCATTAGCATGGAAATGAGTACCTAGACCATATTATTTCTCCAACTTGATGGACATAATAAGCTGCTGACACATGAATAATTTGAATCCTGCATAGCATTTTCTAAAATATGTGGCTGCATCTGTAAACAACCTATTTAGTTATAAGCCCTTATACACGTGCAGCATACCAAACATTTTCTACGTAAATTTCATCATCAATCAGCAGTAGCATGTGAGGTGATTGTCTTTGGCAACAAATGTTTGGTATTTCTCTTCTTTTTTTTCCTTTTTCTTTATTTCAAGTGGATCCTGCACCCAATGTGTAAAGGAGAAAGGAAAATAAGGAACAGAAGCAAGTTGCCAAGGATATGATTGAAACACTTTATTGAGGCATATGAGTGTACCCTTGGGTAAATCCAGCATGGATAAATATATCAAAGATTTTTCGTCTTCGGAAATTGTTTTAACCTTTTATTTAAGCTTGTAGATGCTAGGAAAAACTTTGGAACGTTCTGTACAAAGATAAGTATGAACTTGATCTGTATTAGATTTGTATATTTAGGAAGGCTGCGCAGTTTCTTCAAAACAAAAGTGGTGTAACAATCAATAAAAGCTGCTTGTAATGGTATGGGAGAAATGGATGTCAGATTCCTGATTTTAAAATATTGTTTCGAAAATTCTGTTTGAATCTTTTACTATAAATCAAATTTCTTTTAGCTACTTATGAATGTAATATTACGAAAGTAAAAAATTGCTACTTTTTTAAAAAAGTCGGACTACAATTACTGCTATTTTCTCTCTCCACTTGAAATTGGTGCATTATTTTGTGTTGTTGTGGTTGGGGGTTAATGCAAAGGTTGTGTTGAACAAAGAGGGAGAAGGCACCCCCATTTGGGAAATAAGTCCTAGATTGTATGCAATAAGATACTGGCTAAAAGAGCATTGCTTTCTACAAAGAGCACCCAATCTGCACAAAACTATTGTTACTTTTATATGGAAAGATCCTTTCCACCAACCAGGAACAAAATTTTACCTTATTAAAGGAGAAAAAGAAAAAGGAGTCTTACTGTTTTTTCCTTTTGAACCTTCAATTTACATGTGCGAAGTATAATTTTCTTCTTGATTCTTGAATCTTCCATTCTTAAGAGAAATTGCTTTTACTACTGGGATCTCTGACTTTCAATTTTGGTGATTCTCTTCTTTCTCTTGTTTTTATTTTCGTGCAGTTCTCAGAACCATCTGGAATTGTTGAAGCAGAAAATGGTAATCTCTTCTTCTTTGTGCACAATTTCACTTGGCTGATTGCTCACTCTGAGAGTGGACCATAAAACTTTGCAGGAATAAGAGACATAAATAATCACAATGAAATTGGTGGTCTAAACTCTGCAATCCTCACAAATTATTGCAGGAGCTCTATCACGCTTAATTTTTGTATACTCATCGTAAGCTGCACTAGCAAGAATAGTAGGAGTGCTGGTTATGCATCGCAGTAGTTTGTATTGACCAAGTAGATGTTCCTGCTAAAGAATTAAGTTTAAGGTCTATTTTCATGTGGATTAGTAGTTCTTTTAAAAGAAATCAAATTAGGACAACACTCAGTCCTGCATAAACACGGGTGAAGTGTTCATGGGTCATTCCTGCATAAACACTTCTCAACTAATCTGCTCCTATATCTGAAGTTACCTAAGTTGACATGATATCAGAGCAGGGCCCATCTCACCTGATGTTGGGCCCCCAAAATCAAAATTGCCACGCATCAGATGCTAAGCACTGCGCGTGAGGTGGGGTGTTAAAGAATGACAAAAGTCCCACATCGGTGATGAGATGGGTGGACTCCTTATAAGGCTTGTGCAATCCTTCCTTTGAGCTAGCTTTTGGAGTGTGAGTTAGGCCTAAGACCTAATATAACAACCTCATTTTTCTTTGTTCTTTCACAATTGTCCTGGGGGAGAGGGAATAATTGGGATTTTGGTGCATTAAAAGCTGCGCCTAAGGTGTATCATGTGTCTTGATGGAGCATGGCACCAGTTATGTACTAAAAAATATTGGTGGCGAACAAGGCCATTGTTATGTTTACTTCTTGCATGAGTGAGCAATTTGGTGATGATTGAAGGCAAATCAAAAAGAAGAATTTGGGAGAAGACGGGATGATATACACCAGAGATTCATTAATACTTTTTGCAATGTCTCATTGACAAGTTAAACCAGGAAACTGGAGATTTTTTTTGTAAGCTCAAACGTCATATCTTGTAAATCTTGCATCTTCTGGATGCTGTAATTAATACCACTTATCTTATCAAAAAAAAAAAACCAAGAAGATGTTCCCTGCAATGGCAATGTTATTCCAGAATTTGAGATCCAAGTCTTAAGTGTTGAGTTAGATCGTACCTTTGTTTGTATCTCTGTGTTCATGTTAAAAAATGTAACAGCTGATACTTGTATTTGATGCTATTTTATACAACCTTTTTAGGAAGATTGTACATAGCAGATACAAATAACAGTGTGATAAGATACTTAGATCTGAACAAGTCAGAAGCTGAAGTTCTTACTTTGGAGTTGAAAGGAGTGCAGCCTCCACTTAAATCCAGATCTTTGAAGCGCCTTAGACGTCGATCTGGAGCTGACACACAGACTATTGTAGTTAATGGTGGTTCATCCAGTGAGGGTACATTGAACTTAAGAATCTCGGTACCTGAAGGATACCATTTCTCCAAGGTTTTCTTTCTCTCTTCTGAACAAATTGATTAAGAAAATAGGAACAGCATTTCCTTCCCTTTGAATTTACCACCTCAGTATGTCCCTGTTTATTTTGCCTCATAGGCTTTTCTGCCTTATACCAAATGCAGGAAGCGAAGAGTAAATTTAGCATAGATTTTGAGCCAGATAATGCTGCTGAGGTTGATTCCTTGGAGGGAAATCTCAGCCCAGAAGGTTCAGCAGTTGTGCACTTCAGAAGATCTTCTGCTTCACCAACCACCGGCAGAGTTTATTGCAAGGTATGATTATCTGTTTGAATATATCTTTTAAGTTTTACTGTAGTTTAGTGAAGTTTGTGGCCTGCATTTACCTCCTTAGCCATGCGTATCTATATTCAGCCATTTATTAAAGAAGACTATGCCAGGCAATATTTTGAGCAAAATAAAGCATCAGTGCTTTGGAAATGATTTTGACTTGATATATATATGCTTTCAAGTAGCCATTTGTTAGTAGCATCTCATGTAACGTTTGTACCTTGCTTCATGAAATTGACAATATGCTCTCCTTATAAGCATATAATGCCATGGCTCATGTGCTATGTGATATCTTCAGTCTACCAAAGCAATATGTGCTAATGCCAGAATTGATAATATAGATTTGTTCCCTAAGGACGTACTTACAAAAATTAACTTGAGAGGCACACAAACTTATTTGAAGGCCGTGTACCTGGGCGCAAATTCACCACGTTAGACCAGCAGTGTGTTAGTAGCATCTCATTTAGTGTTTGTACCTACCTTTAGCCCGATGCTATCACTTTCCTAGTCTGTAATGGTCCATCTTAGAGTTACATTTTCAATGAGTACTATAGCCACTTCCAATTTCAGATACTCATTTCAATGTGTTAGTAGCATCTCGTGTAGTGTTTGTATACCTACCTTTAGCCTGATGAGAATGCTTTCACTTTCCTAGTTTATAATGGTCCATCTTAGTGTTGTTACATTTTCAATGAGTACTATTGTCACTTCCAATTTCAGGTATACTATTGCAAAGAAGATGAGGTTTGCTTGTACCAGCCATTGACCTTTGAAGTACCATTTCAAGAGGTAAATCCAGATTTTGCCCCTGCCATGATCACACTTGCTTTTGATGTGAAGCCAAAAACATCCCCAACTAGCTTACAGATTCCGGCTAGGTAATGGATTCATCGTGAGAATACGTATTACTTAATCATGATTACTTGATAATAAATGAATGTATATAGAATGACACATCACGTTTGTGCTTCACATTCAATTCAAGATATTAAAAAGAAATTGATACACTGTTTAGTACTTTAATAGATGTCTTAATCATAAATCATTAATTGCTTGATAAGCAAAGGATAAA</genome_strand>
        <mrna_strand>CGTTAAGGCTTACACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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..............................................................................................GTATACTATTGCAAAGAAGATGAGGTTTGCTTGTACCAGCCATTGACCTTTGAAGTACCATTTCAAGAGGTAAATCCAGATTTTGCCCCTGCCATGATCACACTTGCTTTTGATGTGAAGCCAAAAACATCCCCAACTAGCTTACAGATTCCGGCTAGGTAATGGATTCATCGTGAGAATACGTATTACTTAATCATGATTACTTGATAATAAATGAATGTATATAGAATGACACATCACGTTTGTGCTTCACATTCAATTCAAGATATTAAAAAGAAATTGATACA......................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358163" ref_strand="+" ref_description="SGN-E358163 [cLHT-23-G21]">
      <seq>ttaaggtttacaacttctctactggccacttatggagaacccaaactacccgcacttttcaatccaagatccaaattatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgtttgatatggatggtgtgctctgcaatagtgaggagtcgtcaagaaaagcggctgttgatgtttttgctgagatgggtgttcaagtaaccgttgaagactttgtgcctttcatgggcatgggtgaagcaaacttcttaggtggtgttgctgctgctaagggtgttgaaagatttgataccgaagctgcaaagaaaaggttttttgagatatatttattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91751" stop="94180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92051" g_stop="92393" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92394" i_stop="93781" i_length="1388">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93782" g_stop="93880" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="442" r_length="99" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E358163" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92051" e_stop="92393"/>
          <exon e_start="93782" e_stop="93880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGCTTACACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGGGTAAAATCTTTGTTCTTTCTTGATTATTACATTCTTTTTATTTATGTTCTTGGGAAGGTTTCTTTGTCAATTTGCTTTGTATTTTCCCTTCTTGATTTTCTTTCATGTGAAAGATGGGTATGAAATTATCATCGGTTCGCGGTGTACTATTTAAGGCTACTGATTCTTGATTGAAAAGTAGTTTTTTGATTTATATGTTTGGGAACGACAATTTTGGGTGTTTCTGTTGAATTCACTAGCTTCTTTAAGAAGCGGAGAATAAAGTGTAAAGCATCAGTCCAATGGGTAATTTTTTTACGGTTGAATGTTCTTCTTGATTATTACATTCTTTTTTATTTTGTCTTTGAATTTTGAGTTCTTGAATACTCTCTTTATTGGTAGTTTCTTGATTATTCTAGTACTTTGAACTTTCGGGAGAAAGGTTTCTTTGTCAACCTGTTTATACGTATTTAGATTTTCCCTTCTTGATTTTCTTTTAATTGTTTGATGTGAAAGATGGGTGTGCAATTATCACTGCTTCCTGCGGTGTATTATTTCAGTGTACTGGTTCTTGAACTATTCAACCAATAGCTACTAGTTCTTCATTGAAAAGTAGTTTCTTGATTTATAAGTTTGGAAACCATTGAGAATTTTGGGTATTTTTGTTGACTTCGCTAGCTTCTTTGGATAATCATGCCTTGAGAAGTCGTGGATAAAGGGTAAATCATCAGTCCAATGGACTGTTTTTTACGGTTCAATGTTATTCTCATATTGCCTCATTATATCTTTTAAGGTTTTATCTCAGCCATTGGTCATTCTGTTTAAAGGCATGCTGATGAATTTGATGGAGTAATGATTAAGACAGCTAATGTAATATGGAAACAAAGAAAAAAAAAAGAATATCAAGAATCTCTGTTCAGTCCCCTCCATGGGAACTTTGTTATGTAAGAAACTAGTAATCTTCATCTACCTCATTGAGTATTTGATTTTTGTGAAGCATCATCTCTCTCCAATTAGATAATAAGTTTTGATTTTGGTTGTAGATCTTGTCATTTGCTTACTTTCATGCATATAGCTAGCCGAGGCCTTAGGTGAATTCTTTCACTCACTATGTTAAAATAGGACCCTTCTCCATGAAAAACACTTGTGCTCACAAAATTGTCCATATTGTCTATGAAACTTGTTCTTTTGAATGATTATCAAGTTAATTGCCATTGGATCCATACATCGATTAAATTTTCTGATCTCGAGTTACTCTTCTTTTCTACCCCAAGTGATAAAAAAAATTAGTTTGATGTTACTATCCTTTAGGAAATGAGTCTTTGATTGTGTAGCACCTTTTTCCTTTGTCATATTTTCTCAATGACTTCTTCTCCTTTTCATATTCCTTTACCCTCGAAATATATTAGGTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAA</genome_strand>
        <mrna_strand>TTAAGGTTTACAACTTCTCTACTGGCCACTTATGGAGAACCCAAACTACCCGCACTTTTCAATCCAAGATCCAAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAGTCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAAGATTTGATACCGAAGCTGCAAAGAAAAGGTTTTTTGAGATATATTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331003" ref_strand="+" ref_description="SGN-E331003 [cTOD-10-P14]">
      <seq>taaggctggcaccttttctactggccacttatggaaaacccaaactagctgcacttttcaattcaagatccgaattatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgtttgatatggatggtgtgctctgcaatagtgaggaatcgtcaagaaaagcggctgttgatgtttttgctgagatgggtgttcaagtaaccgttgaagactttgtgcctttcatgggcatgggtgaagcaaacttcttangtggtgttgctgctgctaagggtgtagaaggatttgataccgacgctgcaaagaagaggttctttgagatatatttatcaaagtatgcaaaaccgaattctggcattggtttccctggtgcctttgaacttgtctctcagtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91752" stop="94389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92052" g_stop="92393" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92394" i_stop="93781" i_length="1388">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93782" g_stop="93882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="443" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93883" i_stop="94029" i_length="147">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94030" g_stop="94086" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="500" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E331003" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92052" e_stop="92393"/>
          <exon e_start="93782" e_stop="93882"/>
          <exon e_start="94030" e_stop="94086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGCTTACACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGGGTAAAATCTTTGTTCTTTCTTGATTATTACATTCTTTTTATTTATGTTCTTGGGAAGGTTTCTTTGTCAATTTGCTTTGTATTTTCCCTTCTTGATTTTCTTTCATGTGAAAGATGGGTATGAAATTATCATCGGTTCGCGGTGTACTATTTAAGGCTACTGATTCTTGATTGAAAAGTAGTTTTTTGATTTATATGTTTGGGAACGACAATTTTGGGTGTTTCTGTTGAATTCACTAGCTTCTTTAAGAAGCGGAGAATAAAGTGTAAAGCATCAGTCCAATGGGTAATTTTTTTACGGTTGAATGTTCTTCTTGATTATTACATTCTTTTTTATTTTGTCTTTGAATTTTGAGTTCTTGAATACTCTCTTTATTGGTAGTTTCTTGATTATTCTAGTACTTTGAACTTTCGGGAGAAAGGTTTCTTTGTCAACCTGTTTATACGTATTTAGATTTTCCCTTCTTGATTTTCTTTTAATTGTTTGATGTGAAAGATGGGTGTGCAATTATCACTGCTTCCTGCGGTGTATTATTTCAGTGTACTGGTTCTTGAACTATTCAACCAATAGCTACTAGTTCTTCATTGAAAAGTAGTTTCTTGATTTATAAGTTTGGAAACCATTGAGAATTTTGGGTATTTTTGTTGACTTCGCTAGCTTCTTTGGATAATCATGCCTTGAGAAGTCGTGGATAAAGGGTAAATCATCAGTCCAATGGACTGTTTTTTACGGTTCAATGTTATTCTCATATTGCCTCATTATATCTTTTAAGGTTTTATCTCAGCCATTGGTCATTCTGTTTAAAGGCATGCTGATGAATTTGATGGAGTAATGATTAAGACAGCTAATGTAATATGGAAACAAAGAAAAAAAAAAGAATATCAAGAATCTCTGTTCAGTCCCCTCCATGGGAACTTTGTTATGTAAGAAACTAGTAATCTTCATCTACCTCATTGAGTATTTGATTTTTGTGAAGCATCATCTCTCTCCAATTAGATAATAAGTTTTGATTTTGGTTGTAGATCTTGTCATTTGCTTACTTTCATGCATATAGCTAGCCGAGGCCTTAGGTGAATTCTTTCACTCACTATGTTAAAATAGGACCCTTCTCCATGAAAAACACTTGTGCTCACAAAATTGTCCATATTGTCTATGAAACTTGTTCTTTTGAATGATTATCAAGTTAATTGCCATTGGATCCATACATCGATTAAATTTTCTGATCTCGAGTTACTCTTCTTTTCTACCCCAAGTGATAAAAAAAATTAGTTTGATGTTACTATCCTTTAGGAAATGAGTCTTTGATTGTGTAGCACCTTTTTCCTTTGTCATATTTTCTCAATGACTTCTTCTCCTTTTCATATTCCTTTACCCTCGAAATATATTAGGTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAGGTGATTGAAATTTTATATACATACGAATATCTACTCTCAAAGCAGATTTCACTGGGCATGTTGTTGTTGTAAAACACTTCCCTTTAAGTCGTGGTAACTGACTCCCAGAACTGATAATTTTATTGATAAACTGACAATCATTTGTAGTATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAG</genome_strand>
        <mrna_strand>TAAGGCTGGCACCTTTTCTACTGGCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCAAACTTCTTANGTGGTGTTGCTGCTGCTAAGGGTGTAGAAGGATTTGATACCGACGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAG...................................................................................................................................................TATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372736" ref_strand="+" ref_description="SGN-E372736 [TUS-32-F4]">
      <seq>ttacaccttttctactgcccacttatggaaaacccaaactagctgcacttttcaattcaagatccgaattatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgtttgatatggatggtgtgctctgcaatagtgaggaatcgtcaagaaaagcggctgttgatgtttttgctgagatgggtgttcaagtaaccgttgaagactttgtgcctttcatgggcatgggtgaagcaaacttcttaggtggtgttgctgctgctaagggtgttgaaggatttgataccgaggctgcaaagaagaggttctttgagatatatttatcaaagtatgcaaaaccgaattctggcattggtttccctggtgcctttgaacttgtctctcagtgtaaaagcagtggtctcaaagttgctgttgcatctagtgctgaccggattaaagttgatgcaaacttggctgcagccggtttaccaataacgatgtttgatgcaattgtatcagctgatgcttttaaaaatttgaagcctgctcctgatattttcttggctgcatcacggattcttgatgttcccactagtgagtgtattgtgattgaagatgcactagctggagtacaagctgccaaagctgcaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91758" stop="95948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92058" g_stop="92393" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92394" i_stop="93781" i_length="1388">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93782" g_stop="93882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="437" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93883" i_stop="94029" i_length="147">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94030" g_stop="94086" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="494" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94087" i_stop="94173" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94174" g_stop="94268" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="589" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94269" i_stop="95013" i_length="745">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95014" g_stop="95113" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="689" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95114" i_stop="95591" i_length="478">
            <donor d_prob="0.531" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95592" g_stop="95648" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="746" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E372736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92058" e_stop="92393"/>
          <exon e_start="93782" e_stop="93882"/>
          <exon e_start="94030" e_stop="94086"/>
          <exon e_start="94174" e_stop="94268"/>
          <exon e_start="95014" e_stop="95113"/>
          <exon e_start="95592" e_stop="95648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGGGTAAAATCTTTGTTCTTTCTTGATTATTACATTCTTTTTATTTATGTTCTTGGGAAGGTTTCTTTGTCAATTTGCTTTGTATTTTCCCTTCTTGATTTTCTTTCATGTGAAAGATGGGTATGAAATTATCATCGGTTCGCGGTGTACTATTTAAGGCTACTGATTCTTGATTGAAAAGTAGTTTTTTGATTTATATGTTTGGGAACGACAATTTTGGGTGTTTCTGTTGAATTCACTAGCTTCTTTAAGAAGCGGAGAATAAAGTGTAAAGCATCAGTCCAATGGGTAATTTTTTTACGGTTGAATGTTCTTCTTGATTATTACATTCTTTTTTATTTTGTCTTTGAATTTTGAGTTCTTGAATACTCTCTTTATTGGTAGTTTCTTGATTATTCTAGTACTTTGAACTTTCGGGAGAAAGGTTTCTTTGTCAACCTGTTTATACGTATTTAGATTTTCCCTTCTTGATTTTCTTTTAATTGTTTGATGTGAAAGATGGGTGTGCAATTATCACTGCTTCCTGCGGTGTATTATTTCAGTGTACTGGTTCTTGAACTATTCAACCAATAGCTACTAGTTCTTCATTGAAAAGTAGTTTCTTGATTTATAAGTTTGGAAACCATTGAGAATTTTGGGTATTTTTGTTGACTTCGCTAGCTTCTTTGGATAATCATGCCTTGAGAAGTCGTGGATAAAGGGTAAATCATCAGTCCAATGGACTGTTTTTTACGGTTCAATGTTATTCTCATATTGCCTCATTATATCTTTTAAGGTTTTATCTCAGCCATTGGTCATTCTGTTTAAAGGCATGCTGATGAATTTGATGGAGTAATGATTAAGACAGCTAATGTAATATGGAAACAAAGAAAAAAAAAAGAATATCAAGAATCTCTGTTCAGTCCCCTCCATGGGAACTTTGTTATGTAAGAAACTAGTAATCTTCATCTACCTCATTGAGTATTTGATTTTTGTGAAGCATCATCTCTCTCCAATTAGATAATAAGTTTTGATTTTGGTTGTAGATCTTGTCATTTGCTTACTTTCATGCATATAGCTAGCCGAGGCCTTAGGTGAATTCTTTCACTCACTATGTTAAAATAGGACCCTTCTCCATGAAAAACACTTGTGCTCACAAAATTGTCCATATTGTCTATGAAACTTGTTCTTTTGAATGATTATCAAGTTAATTGCCATTGGATCCATACATCGATTAAATTTTCTGATCTCGAGTTACTCTTCTTTTCTACCCCAAGTGATAAAAAAAATTAGTTTGATGTTACTATCCTTTAGGAAATGAGTCTTTGATTGTGTAGCACCTTTTTCCTTTGTCATATTTTCTCAATGACTTCTTCTCCTTTTCATATTCCTTTACCCTCGAAATATATTAGGTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAGGTGATTGAAATTTTATATACATACGAATATCTACTCTCAAAGCAGATTTCACTGGGCATGTTGTTGTTGTAAAACACTTCCCTTTAAGTCGTGGTAACTGACTCCCAGAACTGATAATTTTATTGATAAACTGACAATCATTTGTAGTATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAGGTATGTATAACCTGTGATGTGATGACTATATGTGGTCTTGCTCTTTCTGTTTATGTTTCTTATTAATTTGGTGATATGGTACGCCAGTGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGATGTGAGTTAACAAATGCGCTTTAGCTGTAAATAGTTGCTTCTCTTTCCTATTATAATTGGCATTCAAGAAACACTGGATTGTACTAACTCAGACCAAGTTTTTTAAAAAACCACTGGATTGTACTGAATCAGACATAGCAAGAACTTTATTTACTTAAAGAATCAGTATAGATATGTTGTATTTTAAAGAACTAACAAAATCTGTTAGTCATGGAATCAGGCATTCAGACTCCAAAGGGTGTGATCTTATATGGTCCTGGGCAATCCTCCCCTTATGAGCTACTTTTGTTGTTGAGTTAGGACAGTCCTTCCATTGTGAGCTAACTTTTATTGTTGAGTTAGCCCCAGTGTGCATTCCTTTACACGGTATCAAAGCTAAACCTCATTGATTCCTGTTGTTATGTTGCTCTTTTTCAATATTTATCCCCGTGTTACGTTCTCCGCATGTCCTTGGGGGGGGGGTCTCCTTATATGGTTCTAGGAATCCTCCCCTTACAAGCTAACTTTTTGTGGTTGAGTTACAAGGTCCATTTCTTTATGGTATTTATGCAAACACACAAACTATGCATTGGTTGATAATGTAGTTTGCAAGGACATAGTAGTTTATTGAGGTTAAAGTGTACAACTCGGATGAAAAACGCAGGTGTGCAGTGAAATAATTGGAAGCTCCCATCCTCCCTCGCCTTTGTCTTTAGTTATCCTTCTATGTGTATTTGACTTCATATTCTTTTTCTTTGATTTGACAGGTTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATGTTCCCACTAGTGAGGTAGTTTCCAGGATGTGCAATGCTGCTTTGCACACCCATCACAATTTTTTCTTTTTAGACACTTAGTTGTGGGTAGTATATGGTGCTTATATGATGAGAAACTTATAGCCAACTAAGATATTACTGAGGTTTACATTCACGTTCTGTTTACCTAAAAGTTCCCTATAATTCATTAATGACTGTAATAATCAGATGAAGTTAGCTGGAAAACAAAATTTAAGCAAAGAAGATACTAAAAACTTGATAAATATGTTGGCAACTTTTATGTTGAAAATTATATTTCTGGATGGGAAATAGATGCGCAATTGCCATTCTATCAGTCAGAACAGATTTTCTAAATATGGGTATAAAAATGGGGGGTGCATTATGAATTGCTGAAGGTTCATGTTCGAGGATGATGAAGTTTTGAAGTGTTAAGTAGATCAGTGTCCTGTTTGTCGACCTTGGTAGGCATTATCATAATCCTCTATGTTGACAGTGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATG</genome_strand>
        <mrna_strand>TTACACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAG...................................................................................................................................................TATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAG.......................................................................................TGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATGTTCCCACTAGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292920" ref_strand="+" ref_description="SGN-E292920 [cLET-11-F4]">
      <seq>ttacaccttttctactgcccacttatggaaaacccaaactagctgcacttttcaattcaagatccgaattatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgtttgatatggatggtgtgctctgcaatagtgaggaatcgtcaagaaaagcggctgttgatgtttttgctgagatgggtgttcaagtaaccgttgaagactttgtgcctttcatgggcatgggtgaagcaaacttcttaggtggtgttgctgctgctaagggtgttgaaggatttgataccgaggctgcaaagaagaggttctttgagatatatttatcaaagtatgcaaaaccgaattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91758" stop="94348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92058" g_stop="92393" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92394" i_stop="93781" i_length="1388">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93782" g_stop="93882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="437" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93883" i_stop="94029" i_length="147">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94030" g_stop="94048" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="456" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E292920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92058" e_stop="92393"/>
          <exon e_start="93782" e_stop="93882"/>
          <exon e_start="94030" e_stop="94048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGGGTAAAATCTTTGTTCTTTCTTGATTATTACATTCTTTTTATTTATGTTCTTGGGAAGGTTTCTTTGTCAATTTGCTTTGTATTTTCCCTTCTTGATTTTCTTTCATGTGAAAGATGGGTATGAAATTATCATCGGTTCGCGGTGTACTATTTAAGGCTACTGATTCTTGATTGAAAAGTAGTTTTTTGATTTATATGTTTGGGAACGACAATTTTGGGTGTTTCTGTTGAATTCACTAGCTTCTTTAAGAAGCGGAGAATAAAGTGTAAAGCATCAGTCCAATGGGTAATTTTTTTACGGTTGAATGTTCTTCTTGATTATTACATTCTTTTTTATTTTGTCTTTGAATTTTGAGTTCTTGAATACTCTCTTTATTGGTAGTTTCTTGATTATTCTAGTACTTTGAACTTTCGGGAGAAAGGTTTCTTTGTCAACCTGTTTATACGTATTTAGATTTTCCCTTCTTGATTTTCTTTTAATTGTTTGATGTGAAAGATGGGTGTGCAATTATCACTGCTTCCTGCGGTGTATTATTTCAGTGTACTGGTTCTTGAACTATTCAACCAATAGCTACTAGTTCTTCATTGAAAAGTAGTTTCTTGATTTATAAGTTTGGAAACCATTGAGAATTTTGGGTATTTTTGTTGACTTCGCTAGCTTCTTTGGATAATCATGCCTTGAGAAGTCGTGGATAAAGGGTAAATCATCAGTCCAATGGACTGTTTTTTACGGTTCAATGTTATTCTCATATTGCCTCATTATATCTTTTAAGGTTTTATCTCAGCCATTGGTCATTCTGTTTAAAGGCATGCTGATGAATTTGATGGAGTAATGATTAAGACAGCTAATGTAATATGGAAACAAAGAAAAAAAAAAGAATATCAAGAATCTCTGTTCAGTCCCCTCCATGGGAACTTTGTTATGTAAGAAACTAGTAATCTTCATCTACCTCATTGAGTATTTGATTTTTGTGAAGCATCATCTCTCTCCAATTAGATAATAAGTTTTGATTTTGGTTGTAGATCTTGTCATTTGCTTACTTTCATGCATATAGCTAGCCGAGGCCTTAGGTGAATTCTTTCACTCACTATGTTAAAATAGGACCCTTCTCCATGAAAAACACTTGTGCTCACAAAATTGTCCATATTGTCTATGAAACTTGTTCTTTTGAATGATTATCAAGTTAATTGCCATTGGATCCATACATCGATTAAATTTTCTGATCTCGAGTTACTCTTCTTTTCTACCCCAAGTGATAAAAAAAATTAGTTTGATGTTACTATCCTTTAGGAAATGAGTCTTTGATTGTGTAGCACCTTTTTCCTTTGTCATATTTTCTCAATGACTTCTTCTCCTTTTCATATTCCTTTACCCTCGAAATATATTAGGTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAGGTGATTGAAATTTTATATACATACGAATATCTACTCTCAAAGCAGATTTCACTGGGCATGTTGTTGTTGTAAAACACTTCCCTTTAAGTCGTGGTAACTGACTCCCAGAACTGATAATTTTATTGATAAACTGACAATCATTTGTAGTATGCAAAACCGAATTCTG</genome_strand>
        <mrna_strand>TTACACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAG...................................................................................................................................................TATGCAAAACCGAATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735944" ref_strand="+" ref_description="SGN-E735944 [LC03DB05]">
      <seq>cgcttttctactgcccacttatggaaaacccaaactagctgcacttttcaattcaagatccgaattatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91764" stop="92575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92062" g_stop="92275" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E735944" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92062" e_stop="92275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTT</genome_strand>
        <mrna_strand>CGCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726152" ref_strand="+" ref_description="SGN-E726152 [LA10BH08]">
      <seq>cttttctactgcccacttatggaaaacccaaactagctgcacttttcaattcaagatccgaattatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgtttgatatggatggtgtgctctgcaatagtgaggaatcgtcaagaaaagcggctgttgatgtttttgctgagatgggtgttcaagtaaccgttgaagactttgtgcctttcatgggcatgggtgaagcaaacttcttaggtggtgttgctgctgctaagggtgttgaaggatttgataccgaggctgcaaagaagaggttctttgagatatatttatcaaagtatgcaaaaccgaattctggcattggtttccctggtgccttttgacttgtctctcagtgtaaagcagtggtctcaaagtgctgtgcatctagtgctgaccggattnaagtgatgcaacttggctgcagccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91764" stop="94552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92064" g_stop="92393" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92394" i_stop="93781" i_length="1388">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93782" g_stop="93882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="431" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93883" i_stop="94029" i_length="147">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94030" g_stop="94086" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="488" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94087" i_stop="94173" i_length="87">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94174" g_stop="94252" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="562" r_length="74" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E726152" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92064" e_stop="92393"/>
          <exon e_start="93782" e_stop="93882"/>
          <exon e_start="94030" e_stop="94086"/>
          <exon e_start="94174" e_stop="94252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGGGTAAAATCTTTGTTCTTTCTTGATTATTACATTCTTTTTATTTATGTTCTTGGGAAGGTTTCTTTGTCAATTTGCTTTGTATTTTCCCTTCTTGATTTTCTTTCATGTGAAAGATGGGTATGAAATTATCATCGGTTCGCGGTGTACTATTTAAGGCTACTGATTCTTGATTGAAAAGTAGTTTTTTGATTTATATGTTTGGGAACGACAATTTTGGGTGTTTCTGTTGAATTCACTAGCTTCTTTAAGAAGCGGAGAATAAAGTGTAAAGCATCAGTCCAATGGGTAATTTTTTTACGGTTGAATGTTCTTCTTGATTATTACATTCTTTTTTATTTTGTCTTTGAATTTTGAGTTCTTGAATACTCTCTTTATTGGTAGTTTCTTGATTATTCTAGTACTTTGAACTTTCGGGAGAAAGGTTTCTTTGTCAACCTGTTTATACGTATTTAGATTTTCCCTTCTTGATTTTCTTTTAATTGTTTGATGTGAAAGATGGGTGTGCAATTATCACTGCTTCCTGCGGTGTATTATTTCAGTGTACTGGTTCTTGAACTATTCAACCAATAGCTACTAGTTCTTCATTGAAAAGTAGTTTCTTGATTTATAAGTTTGGAAACCATTGAGAATTTTGGGTATTTTTGTTGACTTCGCTAGCTTCTTTGGATAATCATGCCTTGAGAAGTCGTGGATAAAGGGTAAATCATCAGTCCAATGGACTGTTTTTTACGGTTCAATGTTATTCTCATATTGCCTCATTATATCTTTTAAGGTTTTATCTCAGCCATTGGTCATTCTGTTTAAAGGCATGCTGATGAATTTGATGGAGTAATGATTAAGACAGCTAATGTAATATGGAAACAAAGAAAAAAAAAAGAATATCAAGAATCTCTGTTCAGTCCCCTCCATGGGAACTTTGTTATGTAAGAAACTAGTAATCTTCATCTACCTCATTGAGTATTTGATTTTTGTGAAGCATCATCTCTCTCCAATTAGATAATAAGTTTTGATTTTGGTTGTAGATCTTGTCATTTGCTTACTTTCATGCATATAGCTAGCCGAGGCCTTAGGTGAATTCTTTCACTCACTATGTTAAAATAGGACCCTTCTCCATGAAAAACACTTGTGCTCACAAAATTGTCCATATTGTCTATGAAACTTGTTCTTTTGAATGATTATCAAGTTAATTGCCATTGGATCCATACATCGATTAAATTTTCTGATCTCGAGTTACTCTTCTTTTCTACCCCAAGTGATAAAAAAAATTAGTTTGATGTTACTATCCTTTAGGAAATGAGTCTTTGATTGTGTAGCACCTTTTTCCTTTGTCATATTTTCTCAATGACTTCTTCTCCTTTTCATATTCCTTTACCCTCGAAATATATTAGGTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAGGTGATTGAAATTTTATATACATACGAATATCTACTCTCAAAGCAGATTTCACTGGGCATGTTGTTGTTGTAAAACACTTCCCTTTAAGTCGTGGTAACTGACTCCCAGAACTGATAATTTTATTGATAAACTGACAATCATTTGTAGTATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAGGTATGTATAACCTGTGATGTGATGACTATATGTGGTCTTGCTCTTTCTGTTTATGTTTCTTATTAATTTGGTGATATGGTACGCCAGTGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCG</genome_strand>
        <mrna_strand>CTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAG...................................................................................................................................................TATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTTGACTTGTCTCTCAG.......................................................................................TGT-AAAGCAGTGGTCTCAAAG-TGCTG-TGCATCTAGTGCTGACCGGATTNAAG-TGATGC-AACTTGGCTGCAGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737195" ref_strand="+" ref_description="SGN-E737195 [LC08DC09]">
      <seq>cttttctactgcccacttatggaaaacccaaactagctgcacttttcaattcaagatccgaattatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91764" stop="92575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92064" g_stop="92275" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E737195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92064" e_stop="92275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTT</genome_strand>
        <mrna_strand>CTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738514" ref_strand="+" ref_description="SGN-E738514 [LC13DG05]">
      <seq>cttttctactgcccacttatggaaaacccaaactagctgcacttttcaattcaagatccgaattatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91764" stop="92575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92064" g_stop="92275" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E738514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92064" e_stop="92275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTT</genome_strand>
        <mrna_strand>CTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738717" ref_strand="+" ref_description="SGN-E738717 [LC14CH12]">
      <seq>cttttctactgcccacttatggaaaacccaaactagctgcacttttcaattcaagatccgaattatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91764" stop="92575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92064" g_stop="92275" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E738717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92064" e_stop="92275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTT</genome_strand>
        <mrna_strand>CTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740818" ref_strand="+" ref_description="SGN-E740818 [LC23AB06]">
      <seq>cttttctactgcccacttatggaaaacccaaactagctgcacttttcaattcaagatccgaattatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91764" stop="92575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92064" g_stop="92275" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E740818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92064" e_stop="92275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTT</genome_strand>
        <mrna_strand>CTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740925" ref_strand="+" ref_description="SGN-E740925 [LC23CA09]">
      <seq>cttttctactgcccacttatggaaaacccaaactagctgcacttttcaattcaagatccgaattatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91764" stop="92575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92064" g_stop="92275" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E740925" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92064" e_stop="92275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTT</genome_strand>
        <mrna_strand>CTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270957" ref_strand="+" ref_description="SGN-E270957 [cLEM-22-C3]">
      <seq>ttttctactgcccacttatggaaaacccaaactagctgcacttttgaattcaagatccgaattatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcctcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgtttgatatggatggtgtgctctgcaatagtgaggaatcgtcaagaaaagcggctgttgatgtttttgctgagatgggtgttcaagtaaccgttgaagactttgtgcctttcatgggcatgggtgaagcaaacttcttaggtggtgttgctgctgctaagggtgttgaaggatttgataccgaggctgcaaagaagaggttctttgagatatatttatcaaagtatgcaaaaccgaattctggcattggtttccctggtgcctttgaacttgtctctcagtgtaaaagcagtggtctcaaagttgctgttgcatctagtgctgaccggattaaagttgatgcaaacttggctgcagccggtttaccaataacgatgtttgatgcaattgtatcagctgatgcttttaaaaatttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91765" stop="95356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92065" g_stop="92393" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92394" i_stop="93781" i_length="1388">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93782" g_stop="93882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="430" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93883" i_stop="94029" i_length="147">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94030" g_stop="94086" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="487" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94087" i_stop="94173" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94174" g_stop="94268" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="582" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94269" i_stop="95013" i_length="745">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95014" g_stop="95056" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="625" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E270957" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92065" e_stop="92393"/>
          <exon e_start="93782" e_stop="93882"/>
          <exon e_start="94030" e_stop="94086"/>
          <exon e_start="94174" e_stop="94268"/>
          <exon e_start="95014" e_stop="95056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGGGTAAAATCTTTGTTCTTTCTTGATTATTACATTCTTTTTATTTATGTTCTTGGGAAGGTTTCTTTGTCAATTTGCTTTGTATTTTCCCTTCTTGATTTTCTTTCATGTGAAAGATGGGTATGAAATTATCATCGGTTCGCGGTGTACTATTTAAGGCTACTGATTCTTGATTGAAAAGTAGTTTTTTGATTTATATGTTTGGGAACGACAATTTTGGGTGTTTCTGTTGAATTCACTAGCTTCTTTAAGAAGCGGAGAATAAAGTGTAAAGCATCAGTCCAATGGGTAATTTTTTTACGGTTGAATGTTCTTCTTGATTATTACATTCTTTTTTATTTTGTCTTTGAATTTTGAGTTCTTGAATACTCTCTTTATTGGTAGTTTCTTGATTATTCTAGTACTTTGAACTTTCGGGAGAAAGGTTTCTTTGTCAACCTGTTTATACGTATTTAGATTTTCCCTTCTTGATTTTCTTTTAATTGTTTGATGTGAAAGATGGGTGTGCAATTATCACTGCTTCCTGCGGTGTATTATTTCAGTGTACTGGTTCTTGAACTATTCAACCAATAGCTACTAGTTCTTCATTGAAAAGTAGTTTCTTGATTTATAAGTTTGGAAACCATTGAGAATTTTGGGTATTTTTGTTGACTTCGCTAGCTTCTTTGGATAATCATGCCTTGAGAAGTCGTGGATAAAGGGTAAATCATCAGTCCAATGGACTGTTTTTTACGGTTCAATGTTATTCTCATATTGCCTCATTATATCTTTTAAGGTTTTATCTCAGCCATTGGTCATTCTGTTTAAAGGCATGCTGATGAATTTGATGGAGTAATGATTAAGACAGCTAATGTAATATGGAAACAAAGAAAAAAAAAAGAATATCAAGAATCTCTGTTCAGTCCCCTCCATGGGAACTTTGTTATGTAAGAAACTAGTAATCTTCATCTACCTCATTGAGTATTTGATTTTTGTGAAGCATCATCTCTCTCCAATTAGATAATAAGTTTTGATTTTGGTTGTAGATCTTGTCATTTGCTTACTTTCATGCATATAGCTAGCCGAGGCCTTAGGTGAATTCTTTCACTCACTATGTTAAAATAGGACCCTTCTCCATGAAAAACACTTGTGCTCACAAAATTGTCCATATTGTCTATGAAACTTGTTCTTTTGAATGATTATCAAGTTAATTGCCATTGGATCCATACATCGATTAAATTTTCTGATCTCGAGTTACTCTTCTTTTCTACCCCAAGTGATAAAAAAAATTAGTTTGATGTTACTATCCTTTAGGAAATGAGTCTTTGATTGTGTAGCACCTTTTTCCTTTGTCATATTTTCTCAATGACTTCTTCTCCTTTTCATATTCCTTTACCCTCGAAATATATTAGGTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAGGTGATTGAAATTTTATATACATACGAATATCTACTCTCAAAGCAGATTTCACTGGGCATGTTGTTGTTGTAAAACACTTCCCTTTAAGTCGTGGTAACTGACTCCCAGAACTGATAATTTTATTGATAAACTGACAATCATTTGTAGTATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAGGTATGTATAACCTGTGATGTGATGACTATATGTGGTCTTGCTCTTTCTGTTTATGTTTCTTATTAATTTGGTGATATGGTACGCCAGTGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGATGTGAGTTAACAAATGCGCTTTAGCTGTAAATAGTTGCTTCTCTTTCCTATTATAATTGGCATTCAAGAAACACTGGATTGTACTAACTCAGACCAAGTTTTTTAAAAAACCACTGGATTGTACTGAATCAGACATAGCAAGAACTTTATTTACTTAAAGAATCAGTATAGATATGTTGTATTTTAAAGAACTAACAAAATCTGTTAGTCATGGAATCAGGCATTCAGACTCCAAAGGGTGTGATCTTATATGGTCCTGGGCAATCCTCCCCTTATGAGCTACTTTTGTTGTTGAGTTAGGACAGTCCTTCCATTGTGAGCTAACTTTTATTGTTGAGTTAGCCCCAGTGTGCATTCCTTTACACGGTATCAAAGCTAAACCTCATTGATTCCTGTTGTTATGTTGCTCTTTTTCAATATTTATCCCCGTGTTACGTTCTCCGCATGTCCTTGGGGGGGGGGTCTCCTTATATGGTTCTAGGAATCCTCCCCTTACAAGCTAACTTTTTGTGGTTGAGTTACAAGGTCCATTTCTTTATGGTATTTATGCAAACACACAAACTATGCATTGGTTGATAATGTAGTTTGCAAGGACATAGTAGTTTATTGAGGTTAAAGTGTACAACTCGGATGAAAAACGCAGGTGTGCAGTGAAATAATTGGAAGCTCCCATCCTCCCTCGCCTTTGTCTTTAGTTATCCTTCTATGTGTATTTGACTTCATATTCTTTTTCTTTGATTTGACAGGTTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAG</genome_strand>
        <mrna_strand>TTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTGAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCCTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAG...................................................................................................................................................TATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAG.......................................................................................TGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737715" ref_strand="+" ref_description="SGN-E737715 [LC10DH06]">
      <seq>tatccattcaatttctttcaaaaaacttcagaatgttggattttgaatcaagaaagatgggtttaaaggtgagtgcttcccaaaaattggaagagaagaatgtaccggagtcgggtagccaatgggggaaagtgtcggcagtgttgtttgatatggatggtgtgctctgcaatagtgaggaatcgtcaagaaaagcggctgttgatgtttttgctgagatgggtgttcaagtaaccgttgaagactttgtgcctttcatgggcatgggtgaagcaaacttcttaggtggtgttgctgctgctaagggtgttgaaggatttgataccgaggctgcaaagaagaggttctttgagatatatttatcaaagtatgcaaaaccgaattctggcattggtttccctggtgcctttgaacttgtctctcagtgtaaaagcagtggtctcaaagttgctgttgcatctagtgctgaccggattaaagttgatgcaaacttggctgcagccggtttaccaataacgatgtttgatgcaattgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="91827" stop="95331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92127" g_stop="92393" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92394" i_stop="93781" i_length="1388">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93782" g_stop="93882" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="368" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93883" i_stop="94029" i_length="147">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94030" g_stop="94086" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="425" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94087" i_stop="94173" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94174" g_stop="94268" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="520" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94269" i_stop="95013" i_length="745">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95014" g_stop="95031" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="538" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E737715" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92127" e_stop="92393"/>
          <exon e_start="93782" e_stop="93882"/>
          <exon e_start="94030" e_stop="94086"/>
          <exon e_start="94174" e_stop="94268"/>
          <exon e_start="95014" e_stop="95031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGGGTAAAATCTTTGTTCTTTCTTGATTATTACATTCTTTTTATTTATGTTCTTGGGAAGGTTTCTTTGTCAATTTGCTTTGTATTTTCCCTTCTTGATTTTCTTTCATGTGAAAGATGGGTATGAAATTATCATCGGTTCGCGGTGTACTATTTAAGGCTACTGATTCTTGATTGAAAAGTAGTTTTTTGATTTATATGTTTGGGAACGACAATTTTGGGTGTTTCTGTTGAATTCACTAGCTTCTTTAAGAAGCGGAGAATAAAGTGTAAAGCATCAGTCCAATGGGTAATTTTTTTACGGTTGAATGTTCTTCTTGATTATTACATTCTTTTTTATTTTGTCTTTGAATTTTGAGTTCTTGAATACTCTCTTTATTGGTAGTTTCTTGATTATTCTAGTACTTTGAACTTTCGGGAGAAAGGTTTCTTTGTCAACCTGTTTATACGTATTTAGATTTTCCCTTCTTGATTTTCTTTTAATTGTTTGATGTGAAAGATGGGTGTGCAATTATCACTGCTTCCTGCGGTGTATTATTTCAGTGTACTGGTTCTTGAACTATTCAACCAATAGCTACTAGTTCTTCATTGAAAAGTAGTTTCTTGATTTATAAGTTTGGAAACCATTGAGAATTTTGGGTATTTTTGTTGACTTCGCTAGCTTCTTTGGATAATCATGCCTTGAGAAGTCGTGGATAAAGGGTAAATCATCAGTCCAATGGACTGTTTTTTACGGTTCAATGTTATTCTCATATTGCCTCATTATATCTTTTAAGGTTTTATCTCAGCCATTGGTCATTCTGTTTAAAGGCATGCTGATGAATTTGATGGAGTAATGATTAAGACAGCTAATGTAATATGGAAACAAAGAAAAAAAAAAGAATATCAAGAATCTCTGTTCAGTCCCCTCCATGGGAACTTTGTTATGTAAGAAACTAGTAATCTTCATCTACCTCATTGAGTATTTGATTTTTGTGAAGCATCATCTCTCTCCAATTAGATAATAAGTTTTGATTTTGGTTGTAGATCTTGTCATTTGCTTACTTTCATGCATATAGCTAGCCGAGGCCTTAGGTGAATTCTTTCACTCACTATGTTAAAATAGGACCCTTCTCCATGAAAAACACTTGTGCTCACAAAATTGTCCATATTGTCTATGAAACTTGTTCTTTTGAATGATTATCAAGTTAATTGCCATTGGATCCATACATCGATTAAATTTTCTGATCTCGAGTTACTCTTCTTTTCTACCCCAAGTGATAAAAAAAATTAGTTTGATGTTACTATCCTTTAGGAAATGAGTCTTTGATTGTGTAGCACCTTTTTCCTTTGTCATATTTTCTCAATGACTTCTTCTCCTTTTCATATTCCTTTACCCTCGAAATATATTAGGTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAGGTGATTGAAATTTTATATACATACGAATATCTACTCTCAAAGCAGATTTCACTGGGCATGTTGTTGTTGTAAAACACTTCCCTTTAAGTCGTGGTAACTGACTCCCAGAACTGATAATTTTATTGATAAACTGACAATCATTTGTAGTATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAGGTATGTATAACCTGTGATGTGATGACTATATGTGGTCTTGCTCTTTCTGTTTATGTTTCTTATTAATTTGGTGATATGGTACGCCAGTGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGATGTGAGTTAACAAATGCGCTTTAGCTGTAAATAGTTGCTTCTCTTTCCTATTATAATTGGCATTCAAGAAACACTGGATTGTACTAACTCAGACCAAGTTTTTTAAAAAACCACTGGATTGTACTGAATCAGACATAGCAAGAACTTTATTTACTTAAAGAATCAGTATAGATATGTTGTATTTTAAAGAACTAACAAAATCTGTTAGTCATGGAATCAGGCATTCAGACTCCAAAGGGTGTGATCTTATATGGTCCTGGGCAATCCTCCCCTTATGAGCTACTTTTGTTGTTGAGTTAGGACAGTCCTTCCATTGTGAGCTAACTTTTATTGTTGAGTTAGCCCCAGTGTGCATTCCTTTACACGGTATCAAAGCTAAACCTCATTGATTCCTGTTGTTATGTTGCTCTTTTTCAATATTTATCCCCGTGTTACGTTCTCCGCATGTCCTTGGGGGGGGGGTCTCCTTATATGGTTCTAGGAATCCTCCCCTTACAAGCTAACTTTTTGTGGTTGAGTTACAAGGTCCATTTCTTTATGGTATTTATGCAAACACACAAACTATGCATTGGTTGATAATGTAGTTTGCAAGGACATAGTAGTTTATTGAGGTTAAAGTGTACAACTCGGATGAAAAACGCAGGTGTGCAGTGAAATAATTGGAAGCTCCCATCCTCCCTCGCCTTTGTCTTTAGTTATCCTTCTATGTGTATTTGACTTCATATTCTTTTTCTTTGATTTGACAGGTTTGATGCAATTGTATC</genome_strand>
        <mrna_strand>TATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAG...................................................................................................................................................TATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAG.......................................................................................TGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATGCAATTGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285068" ref_strand="-" ref_description="SGN-E285068 [cLER-19-H22]">
      <seq>atatatttatcaaagtatgcaaaaccgaattctggcattggtttccctggtgcctttgaacttgtctctcagtgtaaaagcagtggtctcaaagttgctgttgcatctagtgctgaccggattaaagttgatgcaaacttggctgcagccggtttaccaataacgatgtttgatgcaattgtatcagctgatgcttttaaaaatttgaagcctgctcctgatattttcttggctgcatcacggattcttgatgttcccactagtgagtgtattgtgattgaagatgcactagctggagtacaagctgccaaagctgcaaaaatgagatgtatagcagtgacgacaacactatcagaagatactctaaatgcggcggagccatcactcatcagaaaggagataagtgatatttcacttgaagatatcctcaatggtggctctggtagccatagtatgtagttcaccgacatgttaagaacttccctttcatgtaccatttacaaatgtagaatactgaagctctttttttttttttttatggaaaaacttgcgagtaagctcttttttgtaatgactgtaatttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="93728" stop="96437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93868" g_stop="93882" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93883" i_stop="94029" i_length="147">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94030" g_stop="94086" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="72" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94087" i_stop="94173" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94174" g_stop="94268" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="167" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94269" i_stop="95013" i_length="745">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95014" g_stop="95113" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="267" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95114" i_stop="95591" i_length="478">
            <donor d_prob="0.531" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95592" g_stop="95650" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="326" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95651" i_stop="95875" i_length="225">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95876" g_stop="96137" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="587" r_length="261" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E285068" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285068" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93868" e_stop="93882"/>
          <exon e_start="94030" e_stop="94086"/>
          <exon e_start="94174" e_stop="94268"/>
          <exon e_start="95014" e_stop="95113"/>
          <exon e_start="95592" e_stop="95650"/>
          <exon e_start="95876" e_stop="96137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATTTATCAAAGGTGATTGAAATTTTATATACATACGAATATCTACTCTCAAAGCAGATTTCACTGGGCATGTTGTTGTTGTAAAACACTTCCCTTTAAGTCGTGGTAACTGACTCCCAGAACTGATAATTTTATTGATAAACTGACAATCATTTGTAGTATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAGGTATGTATAACCTGTGATGTGATGACTATATGTGGTCTTGCTCTTTCTGTTTATGTTTCTTATTAATTTGGTGATATGGTACGCCAGTGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGATGTGAGTTAACAAATGCGCTTTAGCTGTAAATAGTTGCTTCTCTTTCCTATTATAATTGGCATTCAAGAAACACTGGATTGTACTAACTCAGACCAAGTTTTTTAAAAAACCACTGGATTGTACTGAATCAGACATAGCAAGAACTTTATTTACTTAAAGAATCAGTATAGATATGTTGTATTTTAAAGAACTAACAAAATCTGTTAGTCATGGAATCAGGCATTCAGACTCCAAAGGGTGTGATCTTATATGGTCCTGGGCAATCCTCCCCTTATGAGCTACTTTTGTTGTTGAGTTAGGACAGTCCTTCCATTGTGAGCTAACTTTTATTGTTGAGTTAGCCCCAGTGTGCATTCCTTTACACGGTATCAAAGCTAAACCTCATTGATTCCTGTTGTTATGTTGCTCTTTTTCAATATTTATCCCCGTGTTACGTTCTCCGCATGTCCTTGGGGGGGGGGTCTCCTTATATGGTTCTAGGAATCCTCCCCTTACAAGCTAACTTTTTGTGGTTGAGTTACAAGGTCCATTTCTTTATGGTATTTATGCAAACACACAAACTATGCATTGGTTGATAATGTAGTTTGCAAGGACATAGTAGTTTATTGAGGTTAAAGTGTACAACTCGGATGAAAAACGCAGGTGTGCAGTGAAATAATTGGAAGCTCCCATCCTCCCTCGCCTTTGTCTTTAGTTATCCTTCTATGTGTATTTGACTTCATATTCTTTTTCTTTGATTTGACAGGTTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATGTTCCCACTAGTGAGGTAGTTTCCAGGATGTGCAATGCTGCTTTGCACACCCATCACAATTTTTTCTTTTTAGACACTTAGTTGTGGGTAGTATATGGTGCTTATATGATGAGAAACTTATAGCCAACTAAGATATTACTGAGGTTTACATTCACGTTCTGTTTACCTAAAAGTTCCCTATAATTCATTAATGACTGTAATAATCAGATGAAGTTAGCTGGAAAACAAAATTTAAGCAAAGAAGATACTAAAAACTTGATAAATATGTTGGCAACTTTTATGTTGAAAATTATATTTCTGGATGGGAAATAGATGCGCAATTGCCATTCTATCAGTCAGAACAGATTTTCTAAATATGGGTATAAAAATGGGGGGTGCATTATGAATTGCTGAAGGTTCATGTTCGAGGATGATGAAGTTTTGAAGTGTTAAGTAGATCAGTGTCCTGTTTGTCGACCTTGGTAGGCATTATCATAATCCTCTATGTTGACAGTGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAGGTATTTGCGTCTGAGTGCCTTTTCTTTATATAGGTGATTTATATACACTTGTTCAAAGTTGTTGGTATCACCAACCCTACTTGAACTTTTCTTCACTTGTTGCGTGTGTCAACTTAATCAGTAATCTGTATCAGCATCATTCTAATGTACCTCTTTGCCTCTGTTTTTAGTGATCATTTTGATTCCGTTATTTCTACATTCTTAAGTATGTTGACTTACTTGCAGATGTATAGCAGTGACGACAACACTATCAGAAGATACTCTAAATGCGGCGGAGCCATCACTCATCAGAAAGGAGATAAGTGATATTTCACTTGAAGATATCCTCAATGGTGGCTCTGGTAGCCATAGTATGTAGTTCACCGACATGTTAAGAACTTCCCTTTCATGTACCATTTACAAATGTAGAATACTGAAGCTCTTTTTTTTTTTTTTTTATGGAAAAACTTGCGAGTAAGCTCTTTTTTGTAATGACTGTAATTTGTTG</genome_strand>
        <mrna_strand>ATATATTTATCAAAG...................................................................................................................................................TATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAG.......................................................................................TGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATGTTCCCACTAGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAG.................................................................................................................................................................................................................................ATGTATAGCAGTGACGACAACACTATCAGAAGATACTCTAAATGCGGCGGAGCCATCACTCATCAGAAAGGAGATAAGTGATATTTCACTTGAAGATATCCTCAATGGTGGCTCTGGTAGCCATAGTATGTAGTTCACCGACATGTTAAGAACTTCCCTTTCATGTACCATTTACAAATGTAGAATACTGAAGCTC-TTTTTTTTTTTTTTTATGGAAAAACTTGCGAGTAAGCTCTTTTTTGTAATGACTGTAATTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372735" ref_strand="+" ref_description="SGN-E372735 [TUS-32-F4](-)">
      <seq>aagtatgcaaaaccgaattttggcattggtttccctggggcctttgaacttgtctctcagtgtaaaagcagtggtttcaaagttgctgttgcatttagtgctgaccggattaaagttgatgcaaacttggctgcagccggtttaccaataacgatgtttgatgcaattgtatcagctgatgcttttaaaaatttgaagcctgctcctgatatttttttggctgcatcacggatttttgatgttcccactagtgagtgtattgtgattgaaaatgccctagctggagtacaagctgccaaagctgcaaaaatgaaatgtatagcagtgacgccaaccctatcagaaaatactttaaatgcggcggagccatccctcatcagaaaggagataagtgatatttcacttaaaaatatcctcaatggtggctttggtagccatagtatgtagttccccgacatgttaagaacttccctttcatgtcccatttacaaatgtagaatactgaagcttttttttttttttttttttatggaaaaacttgcgagtaagcttttttttgtaatgactgtaatttgttgaaggatgtcctgttttttgttcccttaagctgtatgctttagctgctaactcagttaatggaaattttttagttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="93728" stop="96514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93880" g_stop="93882" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93883" i_stop="94029" i_length="147">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94030" g_stop="94086" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="60" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94087" i_stop="94173" i_length="87">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94174" g_stop="94268" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="155" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94269" i_stop="95013" i_length="745">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95014" g_stop="95113" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="255" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95114" i_stop="95591" i_length="478">
            <donor d_prob="0.531" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95592" g_stop="95650" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="314" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95651" i_stop="95875" i_length="225">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95876" g_stop="96214" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="655" r_length="341" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="686"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E372735" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93880" e_stop="93882"/>
          <exon e_start="94030" e_stop="94086"/>
          <exon e_start="94174" e_stop="94268"/>
          <exon e_start="95014" e_stop="95113"/>
          <exon e_start="95592" e_stop="95650"/>
          <exon e_start="95876" e_stop="96214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTGATTGAAATTTTATATACATACGAATATCTACTCTCAAAGCAGATTTCACTGGGCATGTTGTTGTTGTAAAACACTTCCCTTTAAGTCGTGGTAACTGACTCCCAGAACTGATAATTTTATTGATAAACTGACAATCATTTGTAGTATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAGGTATGTATAACCTGTGATGTGATGACTATATGTGGTCTTGCTCTTTCTGTTTATGTTTCTTATTAATTTGGTGATATGGTACGCCAGTGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGATGTGAGTTAACAAATGCGCTTTAGCTGTAAATAGTTGCTTCTCTTTCCTATTATAATTGGCATTCAAGAAACACTGGATTGTACTAACTCAGACCAAGTTTTTTAAAAAACCACTGGATTGTACTGAATCAGACATAGCAAGAACTTTATTTACTTAAAGAATCAGTATAGATATGTTGTATTTTAAAGAACTAACAAAATCTGTTAGTCATGGAATCAGGCATTCAGACTCCAAAGGGTGTGATCTTATATGGTCCTGGGCAATCCTCCCCTTATGAGCTACTTTTGTTGTTGAGTTAGGACAGTCCTTCCATTGTGAGCTAACTTTTATTGTTGAGTTAGCCCCAGTGTGCATTCCTTTACACGGTATCAAAGCTAAACCTCATTGATTCCTGTTGTTATGTTGCTCTTTTTCAATATTTATCCCCGTGTTACGTTCTCCGCATGTCCTTGGGGGGGGGGTCTCCTTATATGGTTCTAGGAATCCTCCCCTTACAAGCTAACTTTTTGTGGTTGAGTTACAAGGTCCATTTCTTTATGGTATTTATGCAAACACACAAACTATGCATTGGTTGATAATGTAGTTTGCAAGGACATAGTAGTTTATTGAGGTTAAAGTGTACAACTCGGATGAAAAACGCAGGTGTGCAGTGAAATAATTGGAAGCTCCCATCCTCCCTCGCCTTTGTCTTTAGTTATCCTTCTATGTGTATTTGACTTCATATTCTTTTTCTTTGATTTGACAGGTTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATGTTCCCACTAGTGAGGTAGTTTCCAGGATGTGCAATGCTGCTTTGCACACCCATCACAATTTTTTCTTTTTAGACACTTAGTTGTGGGTAGTATATGGTGCTTATATGATGAGAAACTTATAGCCAACTAAGATATTACTGAGGTTTACATTCACGTTCTGTTTACCTAAAAGTTCCCTATAATTCATTAATGACTGTAATAATCAGATGAAGTTAGCTGGAAAACAAAATTTAAGCAAAGAAGATACTAAAAACTTGATAAATATGTTGGCAACTTTTATGTTGAAAATTATATTTCTGGATGGGAAATAGATGCGCAATTGCCATTCTATCAGTCAGAACAGATTTTCTAAATATGGGTATAAAAATGGGGGGTGCATTATGAATTGCTGAAGGTTCATGTTCGAGGATGATGAAGTTTTGAAGTGTTAAGTAGATCAGTGTCCTGTTTGTCGACCTTGGTAGGCATTATCATAATCCTCTATGTTGACAGTGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAGGTATTTGCGTCTGAGTGCCTTTTCTTTATATAGGTGATTTATATACACTTGTTCAAAGTTGTTGGTATCACCAACCCTACTTGAACTTTTCTTCACTTGTTGCGTGTGTCAACTTAATCAGTAATCTGTATCAGCATCATTCTAATGTACCTCTTTGCCTCTGTTTTTAGTGATCATTTTGATTCCGTTATTTCTACATTCTTAAGTATGTTGACTTACTTGCAGATGTATAGCAGTGACGACAACACTATCAGAAGATACTCTAAATGCGGCGGAGCCATCACTCATCAGAAAGGAGATAAGTGATATTTCACTTGAAGATATCCTCAATGGTGGCTCTGGTAGCCATAGTATGTAGTTCACCGACATGTTAAGAACTTCCCTTTCATGTACCATTTACAAATGTAGAATACTGAAGC--TCTTTTTTTTTTTTTTTTATGGAAAAACTTGCGAGTAAGCTCTTTTTTGTAATGACTGTAATTTGTTGAAGGATGTCCTGTTCTCTGTTCCCTTAAGCTGTATGCTTTAGCTGCTAACTCAGTTAATGGAAATTTTCTAGTTCTA</genome_strand>
        <mrna_strand>AAG...................................................................................................................................................TATGCAAAACCGAATTTTGGCATTGGTTTCCCTGGGGCCTTTGAACTTGTCTCTCAG.......................................................................................TGTAAAAGCAGTGGTTTCAAAGTTGCTGTTGCATTTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAGCCTGCTCCTGATATTTTTTTGGCTGCATCACGGATTTTTGATGTTCCCACTAGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTGTGATTGAAAATGCCCTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAA.................................................................................................................................................................................................................................ATGTATAGCAGTGACGCCAACCCTATCAGAAAATACTTTAAATGCGGCGGAGCCATCCCTCATCAGAAAGGAGATAAGTGATATTTCACTTAAAAATATCCTCAATGGTGGCTTTGGTAGCCATAGTATGTAGTTCCCCGACATGTTAAGAACTTCCCTTTCATGTCCCATTTACAAATGTAGAATACTGAAGCTTTTTTTTTTTTTTTTTTTTATGGAAAAACTTGCGAGTAAGCTTTTTTTTGTAATGACTGTAATTTGTTGAAGGATGTCCTGTTTTTTGTTCCCTTAAGCTGTATGCTTTAGCTGCTAACTCAGTTAATGGAAATTTTTTAGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740837" ref_strand="+" ref_description="SGN-E740837 [LC23AD10]">
      <seq>cctttgtaacacctgatacttcttagggggggcacggctgctccttatcctttcttggaggcgtaaaaaattcttgatgttcccactagtgagtgtattgtgattgaagatgcactagctggagtacaagctgccaaagctgcaaaaatgagatgtatagcagtgacgacaacactatcagaagatactctaaatgcggcggagccatcactcatcagaaaggagataagtgatatttcacttgaagatatcctcaatggtggctctggtagccataatgtgatggtgcaggaatctcaatccattaacgatctagctctctcttttcctgagcccaatatgacagggagtatcacagagctggataattatgtaacaagtggtgccatatcctcgatgggaggggtgcaggttaccagacgaaatgttgttagatatggaagtttaggaattgctgcatcctgtctcctctttactattacaaactggaaggcaatgcagtatgcatctccaaaagctatctggaacttgttgttcggcacaggcaatcctccttttgaacagaaagaagatgcgtccagttcacagaggattcaacaatttgtaaactatatatctgatgtggatgccaggaaatctacgactatcgtgcccgagtttcccatctaaacttgattggctgaatacaagcccccttcagctaggcagggatttgaaaggaaaagtcgttcttttggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="80481" stop="98727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95022" g_stop="95113" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.707"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95114" i_stop="95591" i_length="478">
            <donor d_prob="0.531" d_score="0.80"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95592" g_stop="95650" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="152" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95651" i_stop="95875" i_length="225">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95876" g_stop="96000" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="277" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96001" i_stop="96302" i_length="302">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96303" g_stop="96429" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="404" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96430" i_stop="96885" i_length="456">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96886" g_stop="96973" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="492" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96974" i_stop="97058" i_length="85">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97059" g_stop="97137" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="571" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97138" i_stop="97385" i_length="248">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97386" g_stop="97446" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="632" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97447" i_stop="97642" i_length="196">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97643" g_stop="97718" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="709" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="97719" i_stop="98395" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98396" g_stop="98427" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="741" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E740837" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95022" e_stop="95113"/>
          <exon e_start="95592" e_stop="95650"/>
          <exon e_start="95876" e_stop="96000"/>
          <exon e_start="96303" e_stop="96429"/>
          <exon e_start="96886" e_stop="96973"/>
          <exon e_start="97059" e_stop="97137"/>
          <exon e_start="97386" e_stop="97446"/>
          <exon e_start="97643" e_stop="97718"/>
          <exon e_start="98396" e_stop="98427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGTATCAGCTGATGCTTTTAAAAATTTG-AAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATGTTCCCACTAGTGAGGTAGTTTCCAGGATGTGCAATGCTGCTTTGCACACCCATCACAATTTTTTCTTTTTAGACACTTAGTTGTGGGTAGTATATGGTGCTTATATGATGAGAAACTTATAGCCAACTAAGATATTACTGAGGTTTACATTCACGTTCTGTTTACCTAAAAGTTCCCTATAATTCATTAATGACTGTAATAATCAGATGAAGTTAGCTGGAAAACAAAATTTAAGCAAAGAAGATACTAAAAACTTGATAAATATGTTGGCAACTTTTATGTTGAAAATTATATTTCTGGATGGGAAATAGATGCGCAATTGCCATTCTATCAGTCAGAACAGATTTTCTAAATATGGGTATAAAAATGGGGGGTGCATTATGAATTGCTGAAGGTTCATGTTCGAGGATGATGAAGTTTTGAAGTGTTAAGTAGATCAGTGTCCTGTTTGTCGACCTTGGTAGGCATTATCATAATCCTCTATGTTGACAGTGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAGGTATTTGCGTCTGAGTGCCTTTTCTTTATATAGGTGATTTATATACACTTGTTCAAAGTTGTTGGTATCACCAACCCTACTTGAACTTTTCTTCACTTGTTGCGTGTGTCAACTTAATCAGTAATCTGTATCAGCATCATTCTAATGTACCTCTTTGCCTCTGTTTTTAGTGATCATTTTGATTCCGTTATTTCTACATTCTTAAGTATGTTGACTTACTTGCAGATGTATAGCAGTGACGACAACACTATCAGAAGATACTCTAAATGCGGCGGAGCCATCACTCATCAGAAAGGAGATAAGTGATATTTCACTTGAAGATATCCTCAATGGTGGCTCTGGTAGCCATAGTATGTAGTTCACCGACATGTTAAGAACTTCCCTTTCATGTACCATTTACAAATGTAGAATACTGAAGCTCTTTTTTTTTTTTTTTTATGGAAAAACTTGCGAGTAAGCTCTTTTTTGTAATGACTGTAATTTGTTGAAGGATGTCCTGTTCTCTGTTCCCTTAAGCTGTATGCTTTAGCTGCTAACTCAGTTAATGGAAATTTTCTAGTTCTAGTGTTCCTCTAACATATCATATGTAGTTAATAGTGGCTTCCTTTCTATGCTTACTATAAAATGAATCTAATGATGAAAAACAATGCAGATGTGATGGTGCAGGAATCTCAATCCATTAACGATCTAGCTCTCTCTTTTCCTGAGCCCAATATGACAGGGAGTATCACAGAGCTGGATAATTATGTAACAAGTGGTGCCATATCCTCGATGGGAGGGTAAGAGCGATTCAATATATGATCATCTGCATCATCAAGACCGCTTTTGATATCTAATACCTCAAATTGCTGTATGCATTCATAGATTCATCTTTTTTTCCTTCTTTTTCTCTTTTCCTCTTTGTCTATCTGAAATTATTTTCTTAAACTTTAACTGGATTAAGTTGAATTGCTAAGAACAGTCCATACTGGTGATTTACATCCTTATCAATCTATTTTATGGCATGATGTATAATCACTAAGTTACATGCTTTTTTTTGCTGCATGTAGGAACAAAAAGTCAAATATGCTTAGACTGACATGAATAATACTCGTGCAAATGAAATTCTCTCGTTTGCAAAGTGGAATACCTTTATCCCCCAAAAGGGTCCATATGCCTTTATGAGATGGCCATTTTAGGGCATTTGGTAATTGGTATAATGTTGTCATGAGGTTGCAGAAATAATTTATGGACAGGGTGCAGGTTACCAGACGAAATGTTGTTAGATATGGAAGTTTAGGAATTGCTGCATCCTGTCTCCTCTTTACTATTACAAACTGGAAGGTATATAATTTAATAAAGAAAGCATAAGGTATTTTTTTAATTTATTTTGGTTTTCATGTTCGCAAGCTCTGCTGTTCTTATGCAGGCAATGCAGTATGCATCTCCAAAAGCTATCTGGAACTTGTTGTTCGGCACAGGCAATCCTCCTTTTGAACAGAAAGAAGGTCTACCCCCTCTTACAATGAAGTATTTGTTCTCTTCTCTTCATTTTCATTGTTGTTCCATTCTTCTTGTTGTATGGAACTTCCCTTGATGACATTATTTTTTCTCTTTTTTCTTTTGGGCACATTTCTAATGTGATTTTTATAAATTCTGTATATCAAGTATGGGCTACTTTTTCTTCTTTTCTTTTTCGGTGATATTTGAGATAATTGAAGGAGATCTATTTTTTTTTTGTCTATTGCCCCTGCAGATGCGTCCAGTTCACAGAGGATTCAACAATTTGTAAACTATATATCTGATGTGGATGCCAGGTAACAGAAGTTTTTCATGTAAACTGAAACCTTTTTTTGCTTTATAAATTAAGAAGGTTGCAGTTTTCCTAAATTTATAAGTTAGTATCGTATATATGTTGCATGCTTTCTGGCATCTTTTGATATACTTCTCTTTAATTGTTCTTGGATTCCTAACTTGTTTTTTGATCATGTTTAATATTCTGCATTTTGTTAGGAAATCTACGACTATCGTGCCCGAG-TTCCCATCTAAACTTGATTGGCTGAATACAAGCCCCCTTCAGCTAGGCAGGGTAAATACATAATTTCATATTTCAATTCTGCTCTTTTGGCAACTTTATTTCTTTTTCTTTTCGCTTATTTTCATATATGTGCATATTGGTGTTCTTTTTTCCGTTCTCTAGTCTTCATGCAAATTTTATTCTGGGAATTTTCGGTTGTCTACTGCTTTCTAATTGATGTTTCCTATCGACTACGTGTGTGTAAAATACTTCAAACTTGGAGAGGAATTTCTCCCAAATATAATATTATGTTGTTTCATAATACACCATTCTATTGTAATGGATTTCTACACACTATCCTTTTGAACAATGTTAAGAATCTTTTGACAATGACATTGGCTGCAAAAAAACTTTTAGTGATCGGTACCTTTTCTTTTTTAAATAGTGGTGGTTGGGCTATAGCGTGTGGCGCACCTTGACTATTCCATCGGGTACCCGCTATCTCCCACCACACAAATACTGGGTAATTCTGCCCATCAAGGCTTTAAGCAGATGGGAGACAACCATGGATACTTTTATCATCTATGAATTTGAAAATTTTCTAATATGCTGAATAGTGCTTTTAATCTTATTGTTTCTTGGAGGTATGTTTGTAAGTTGCACATACTAGAAAATGGAAAAAGGAGTAGTTCTGGATGATATATCCATGCTATGCACTCGTTCCCTGAAACATTTCTATGTTTGTGCAGGATTTGAAAGGAAAAGTCGTTCTTTTGGACTT</genome_strand>
        <mrna_strand>CCTTTGTAACACCTGATACTTCTTAGGGGGGGCACGGCTGCTCCTTATCCTTTCTTGGAGGCGTAAAAAATTCTTGATGTTCCCACTAGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAG.................................................................................................................................................................................................................................ATGTATAGCAGTGACGACAACACTATCAGAAGATACTCTAAATGCGGCGGAGCCATCACTCATCAGAAAGGAGATAAGTGATATTTCACTTGAAGATATCCTCAATGGTGGCTCTGGTAGCCATA..............................................................................................................................................................................................................................................................................................................ATGTGATGGTGCAGGAATCTCAATCCATTAACGATCTAGCTCTCTCTTTTCCTGAGCCCAATATGACAGGGAGTATCACAGAGCTGGATAATTATGTAACAAGTGGTGCCATATCCTCGATGGGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCAGGTTACCAGACGAAATGTTGTTAGATATGGAAGTTTAGGAATTGCTGCATCCTGTCTCCTCTTTACTATTACAAACTGGAAG.....................................................................................GCAATGCAGTATGCATCTCCAAAAGCTATCTGGAACTTGTTGTTCGGCACAGGCAATCCTCCTTTTGAACAGAAAGAAG........................................................................................................................................................................................................................................................ATGCGTCCAGTTCACAGAGGATTCAACAATTTGTAAACTATATATCTGATGTGGATGCCAG....................................................................................................................................................................................................GAAATCTACGACTATCGTGCCCGAGTTTCCCATCTAAACTTGATTGGCTGAATACAAGCCCCCTTCAGCTAGGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAAGGAAAAGTCGTTCTTTTGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297766" ref_strand="+" ref_description="SGN-E297766 [cLET-38-E10]">
      <seq>actagtgagtgtattgtgattgaagatgcactagctggagtacaagctgccaaagctgcaaaaatgagatgtatagcagtgacgacaacactatcagaagatactctaaatgcggcggagccatcactcatcagaaaggagataagtgatatttcacttgaagatatcctcaatggtggctctggtagccatagtatgtagttcaccgacatgttaagaacttccctttcatgtaccatttacaaatgtagaatactgaagctcttttttttttttttttatggaaaaacttgcgagtgagctcttttttgtaatgactgtaattagttgaaagatgtcctgttctctgttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="95285" stop="96459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95592" g_stop="95650" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="68" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95651" i_stop="95875" i_length="225">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95876" g_stop="96168" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="361" r_length="293" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E297766" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95592" e_stop="95650"/>
          <exon e_start="95876" e_stop="96168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAGGTATTTGCGTCTGAGTGCCTTTTCTTTATATAGGTGATTTATATACACTTGTTCAAAGTTGTTGGTATCACCAACCCTACTTGAACTTTTCTTCACTTGTTGCGTGTGTCAACTTAATCAGTAATCTGTATCAGCATCATTCTAATGTACCTCTTTGCCTCTGTTTTTAGTGATCATTTTGATTCCGTTATTTCTACATTCTTAAGTATGTTGACTTACTTGCAGATGTATAGCAGTGACGACAACACTATCAGAAGATACTCTAAATGCGGCGGAGCCATCACTCATCAGAAAGGAGATAAGTGATATTTCACTTGAAGATATCCTCAATGGTGGCTCTGGTAGCCATAGTATGTAGTTCACCGACATGTTAAGAACTTCCCTTTCATGTACCATTTACAAATGTAGAATACTGAAGCTCTTTTTTTTTTTTTTTTATGGAAAAACTTGCGAGTAAGCTCTTTTTTGTAATGACTGTAATTTGTTGAAGGATGTCCTGTTCTCTGTTCCCTTAAGCT</genome_strand>
        <mrna_strand>TGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAG.................................................................................................................................................................................................................................ATGTATAGCAGTGACGACAACACTATCAGAAGATACTCTAAATGCGGCGGAGCCATCACTCATCAGAAAGGAGATAAGTGATATTTCACTTGAAGATATCCTCAATGGTGGCTCTGGTAGCCATAGTATGTAGTTCACCGACATGTTAAGAACTTCCCTTTCATGTACCATTTACAAATGTAGAATACTGAAGCTCTTTTTTTTTTTTTTTTATGGAAAAACTTGCGAGTGAGCTCTTTTTTGTAATGACTGTAATTAGTTGAAAGATGTCCTGTTCTCTGTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738054" ref_strand="+" ref_description="SGN-E738054 [LC12AH01]">
      <seq>catgtcactagctggagtacaagctgccaaagctgcaaaaatgagatgtatagcagtgacgacaacactatcagaagatactctaaatgcggcggagccatcactcatcagaaaggagataagtgatatttcacttgaagatatcctcaatggtggctctggtagccataatgtgatggtgcaggaatctcaatccattaacgatctagctctctcttttcctgagcccaatatgacagggagtatcacagagctggataattatgtaacaagtggtgccatatcctcgatgggaggggtgcaggttaccagacgaaatgttgttagatatggaagtttaggaattgctgcatcctgtctcctctttactattacaaactggaaggcaatgcagtatgcatctccaaaagctatctggaacttgttgttcggcacaggcaatcctccttttgaacagaaagaagatgcgtccagttcacagaggattcaacaatttgtaaactatatatctgatgtggatgccaggaaatctacgactatcgtgcccgagttcccatctaaacttgattggctgaatacaagcccccttcagctaggcagggatttgaaaggaaaagtcgttcttttggacttctggacttattgctgcattaactgtatgcatgtactgccagatctggagtttctggagaataaatataaagataagccttttgtggttgtgggggtgcattcagctaaatttgacaacgagaaggaccttgaagccatccgtagtgctgtattacgctatggaatcactcatccagttgtcaatgatggagaaatgaatttatggcgggaattaggtgtcaattcatggccaacatttgttcttgtcgggccaaaatggcagctcttggcacaagtagctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="80993" stop="100539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95607" g_stop="95650" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95651" i_stop="95875" i_length="225">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95876" g_stop="96000" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="170" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96001" i_stop="96302" i_length="302">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96303" g_stop="96429" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="297" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96430" i_stop="96885" i_length="456">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96886" g_stop="96973" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="385" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96974" i_stop="97058" i_length="85">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97059" g_stop="97137" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="464" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97138" i_stop="97385" i_length="248">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97386" g_stop="97446" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="525" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97447" i_stop="97642" i_length="196">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97643" g_stop="97718" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="601" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97719" i_stop="98395" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98396" g_stop="98506" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="712" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98507" i_stop="99438" i_length="932">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="99439" g_stop="99534" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="808" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="99535" i_stop="100131" i_length="597">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="100132" g_stop="100239" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="809" r_stop="916" r_length="108" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E738054" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95607" e_stop="95650"/>
          <exon e_start="95876" e_stop="96000"/>
          <exon e_start="96303" e_stop="96429"/>
          <exon e_start="96886" e_stop="96973"/>
          <exon e_start="97059" e_stop="97137"/>
          <exon e_start="97386" e_stop="97446"/>
          <exon e_start="97643" e_stop="97718"/>
          <exon e_start="98396" e_stop="98506"/>
          <exon e_start="99439" e_stop="99534"/>
          <exon e_start="100132" e_stop="100239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATG-CACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAGGTATTTGCGTCTGAGTGCCTTTTCTTTATATAGGTGATTTATATACACTTGTTCAAAGTTGTTGGTATCACCAACCCTACTTGAACTTTTCTTCACTTGTTGCGTGTGTCAACTTAATCAGTAATCTGTATCAGCATCATTCTAATGTACCTCTTTGCCTCTGTTTTTAGTGATCATTTTGATTCCGTTATTTCTACATTCTTAAGTATGTTGACTTACTTGCAGATGTATAGCAGTGACGACAACACTATCAGAAGATACTCTAAATGCGGCGGAGCCATCACTCATCAGAAAGGAGATAAGTGATATTTCACTTGAAGATATCCTCAATGGTGGCTCTGGTAGCCATAGTATGTAGTTCACCGACATGTTAAGAACTTCCCTTTCATGTACCATTTACAAATGTAGAATACTGAAGCTCTTTTTTTTTTTTTTTTATGGAAAAACTTGCGAGTAAGCTCTTTTTTGTAATGACTGTAATTTGTTGAAGGATGTCCTGTTCTCTGTTCCCTTAAGCTGTATGCTTTAGCTGCTAACTCAGTTAATGGAAATTTTCTAGTTCTAGTGTTCCTCTAACATATCATATGTAGTTAATAGTGGCTTCCTTTCTATGCTTACTATAAAATGAATCTAATGATGAAAAACAATGCAGATGTGATGGTGCAGGAATCTCAATCCATTAACGATCTAGCTCTCTCTTTTCCTGAGCCCAATATGACAGGGAGTATCACAGAGCTGGATAATTATGTAACAAGTGGTGCCATATCCTCGATGGGAGGGTAAGAGCGATTCAATATATGATCATCTGCATCATCAAGACCGCTTTTGATATCTAATACCTCAAATTGCTGTATGCATTCATAGATTCATCTTTTTTTCCTTCTTTTTCTCTTTTCCTCTTTGTCTATCTGAAATTATTTTCTTAAACTTTAACTGGATTAAGTTGAATTGCTAAGAACAGTCCATACTGGTGATTTACATCCTTATCAATCTATTTTATGGCATGATGTATAATCACTAAGTTACATGCTTTTTTTTGCTGCATGTAGGAACAAAAAGTCAAATATGCTTAGACTGACATGAATAATACTCGTGCAAATGAAATTCTCTCGTTTGCAAAGTGGAATACCTTTATCCCCCAAAAGGGTCCATATGCCTTTATGAGATGGCCATTTTAGGGCATTTGGTAATTGGTATAATGTTGTCATGAGGTTGCAGAAATAATTTATGGACAGGGTGCAGGTTACCAGACGAAATGTTGTTAGATATGGAAGTTTAGGAATTGCTGCATCCTGTCTCCTCTTTACTATTACAAACTGGAAGGTATATAATTTAATAAAGAAAGCATAAGGTATTTTTTTAATTTATTTTGGTTTTCATGTTCGCAAGCTCTGCTGTTCTTATGCAGGCAATGCAGTATGCATCTCCAAAAGCTATCTGGAACTTGTTGTTCGGCACAGGCAATCCTCCTTTTGAACAGAAAGAAGGTCTACCCCCTCTTACAATGAAGTATTTGTTCTCTTCTCTTCATTTTCATTGTTGTTCCATTCTTCTTGTTGTATGGAACTTCCCTTGATGACATTATTTTTTCTCTTTTTTCTTTTGGGCACATTTCTAATGTGATTTTTATAAATTCTGTATATCAAGTATGGGCTACTTTTTCTTCTTTTCTTTTTCGGTGATATTTGAGATAATTGAAGGAGATCTATTTTTTTTTTGTCTATTGCCCCTGCAGATGCGTCCAGTTCACAGAGGATTCAACAATTTGTAAACTATATATCTGATGTGGATGCCAGGTAACAGAAGTTTTTCATGTAAACTGAAACCTTTTTTTGCTTTATAAATTAAGAAGGTTGCAGTTTTCCTAAATTTATAAGTTAGTATCGTATATATGTTGCATGCTTTCTGGCATCTTTTGATATACTTCTCTTTAATTGTTCTTGGATTCCTAACTTGTTTTTTGATCATGTTTAATATTCTGCATTTTGTTAGGAAATCTACGACTATCGTGCCCGAGTTCCCATCTAAACTTGATTGGCTGAATACAAGCCCCCTTCAGCTAGGCAGGGTAAATACATAATTTCATATTTCAATTCTGCTCTTTTGGCAACTTTATTTCTTTTTCTTTTCGCTTATTTTCATATATGTGCATATTGGTGTTCTTTTTTCCGTTCTCTAGTCTTCATGCAAATTTTATTCTGGGAATTTTCGGTTGTCTACTGCTTTCTAATTGATGTTTCCTATCGACTACGTGTGTGTAAAATACTTCAAACTTGGAGAGGAATTTCTCCCAAATATAATATTATGTTGTTTCATAATACACCATTCTATTGTAATGGATTTCTACACACTATCCTTTTGAACAATGTTAAGAATCTTTTGACAATGACATTGGCTGCAAAAAAACTTTTAGTGATCGGTACCTTTTCTTTTTTAAATAGTGGTGGTTGGGCTATAGCGTGTGGCGCACCTTGACTATTCCATCGGGTACCCGCTATCTCCCACCACACAAATACTGGGTAATTCTGCCCATCAAGGCTTTAAGCAGATGGGAGACAACCATGGATACTTTTATCATCTATGAATTTGAAAATTTTCTAATATGCTGAATAGTGCTTTTAATCTTATTGTTTCTTGGAGGTATGTTTGTAAGTTGCACATACTAGAAAATGGAAAAAGGAGTAGTTCTGGATGATATATCCATGCTATGCACTCGTTCCCTGAAACATTTCTATGTTTGTGCAGGATTTGAAAGGAAAAGTCGTTCTTTTGGACTTCTGGACTTATTGCTGCATTAACTGTATGCATGTACTGCCAGATCTGGAGTTTCTGGAGAATAAATATAAAGATAAGCCTGTAAGATTGTCATTCATAGCTTAGGGTTGCCATTTCAGCTTTATTGGTTATCTCATGAAATGATATTCTGTCTCTATAACAAGTTGATCATCTGAGATGTTACCCCAATCATTTTTCTAAAATTCTTTCCTGAAAATTCTCATAATTACGCTAATCAATATTCTACTAATTCTGGCAGAAGCAAGCACATGCATACTATAGTTCTGTTGGAACTACATACAATATGAGGTTCTCATTAGATAGGGGAAGTGGAATTAAAAAGTCACGGCCAAGTTAGGTTAGGATGTGTTTAGCTGGTTTAAACTTCGCTCAAAATTCAATTAGTAAAATTCATTTAGTAAGAAATGTTGCTAAAATGTAGGAATGTTATGATCAAGCAGAACTTTTATTATACTAACCAAATGCTGTCTAGATTGCAATCCCATGGGGTTTGTCTTTGTTGATATCACATCTGTATATTCTTCTGTTTGGTAAATTCTATAATTAATTTGTTGTTGTTTTACTTTGGCTTTAGATTACTCTGAAATCCAGACAACAATCTATTAGTTTATTCTATAATATTCCGCTGTACCCACTATTTATTATCTATAACATCTTCACAGAAGAATAGGCATGAAATGAGTTTTGCAGATTGCACGAATGCTGTCAAAAGGAGAAAGAAATGTCATAAGATTTAGCTTTCAGTTGGGCTAATCTGTGAACTTTCTGAGTTAATACTGACAGGTCAAACCAATATAGTCACCTCAAATAGTTGTTTCATACCGTGGCTGATCCAGGATTTTCACCATGGGGGTTTGAAAATAAAACAGCTTGGGATTTGAACTTGGAACCTCAAAATGAATTAAGTACTTTTATCCACAGTTGCATCTGAAGGTTTGCTTACACACTTCTAACCATAGTTGTAGCTAATTCATCAAACATTAGTTTTGCAGTTTGTGGTTGTGGGGGTGCATTCAGCTAAATTTGACAACGAGAAGGACCTTGAAGCCATCCGTAGTGCTGTATTACGCTATGGAATCACTCATCCAGTAAGTACTTATTCAAGAGCTGAACTATTACTGATTTTAGTGTTGAATGTCTCTTTACCACAATCTATCTGCTTGCTCTTGAATCTATTAGATCCCCAAGAAACGGATGAACATTTGGAAACAACATAAATGTGGAGAGAATTTAGAGCATCCAGATTAGGTTATATATTACTTCTTTTCGGTAGATTAAGGTAGAATGTCCGCTGCTATCTGCACCATACTTGGCTATGTTAAAATTGACATTCCAATCGTTAACACTGTCTTGACAGCCTCTCCCCCACCCTTCTGATCCAATTCAAATTTGTACCATCAAAGCCTCTGGGACTCCATGTATTTAACAGAAGGGAATACTTGCTAATTCACTGTTAATGGTCAAGGATTGCCTGACAATGTATGTAATCAACGTTTCCAATTGAAGCTCTTGTTTATTGCTGAAGTTTATTATTCAGATTGCAGATACTGGTGAATAGAGTAACTTGGAATTTGACATTGTTATCATTTCAAAATATCTGCTTTAGTTTTTAATTGGGGGTGTCTCTCCTTCTTCCCTTCTTTTTTGTATGTTAAGTAGTTTCTTAACCTTCATTGAATGATCAGGTTGTCAATGATGGAGAAATGAATTTATGGCGGGAATTAGGTGTCAATTCATGGCCAACATTTGTTCTTGTCGGGCCAAATGGCAAGCTCTTGGCACAAGTAGCTGGC</genome_strand>
        <mrna_strand>CATGTCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAG.................................................................................................................................................................................................................................ATGTATAGCAGTGACGACAACACTATCAGAAGATACTCTAAATGCGGCGGAGCCATCACTCATCAGAAAGGAGATAAGTGATATTTCACTTGAAGATATCCTCAATGGTGGCTCTGGTAGCCATA..............................................................................................................................................................................................................................................................................................................ATGTGATGGTGCAGGAATCTCAATCCATTAACGATCTAGCTCTCTCTTTTCCTGAGCCCAATATGACAGGGAGTATCACAGAGCTGGATAATTATGTAACAAGTGGTGCCATATCCTCGATGGGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCAGGTTACCAGACGAAATGTTGTTAGATATGGAAGTTTAGGAATTGCTGCATCCTGTCTCCTCTTTACTATTACAAACTGGAAG.....................................................................................GCAATGCAGTATGCATCTCCAAAAGCTATCTGGAACTTGTTGTTCGGCACAGGCAATCCTCCTTTTGAACAGAAAGAAG........................................................................................................................................................................................................................................................ATGCGTCCAGTTCACAGAGGATTCAACAATTTGTAAACTATATATCTGATGTGGATGCCAG....................................................................................................................................................................................................GAAATCTACGACTATCGTGCCCGAGTTCCCATCTAAACTTGATTGGCTGAATACAAGCCCCCTTCAGCTAGGCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAAAGGAAAAGTCGTTCTTTTGGACTTCTGGACTTATTGCTGCATTAACTGTATGCATGTACTGCCAGATCTGGAGTTTCTGGAGAATAAATATAAAGATAAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTTGTGGGGGTGCATTCAGCTAAATTTGACAACGAGAAGGACCTTGAAGCCATCCGTAGTGCTGTATTACGCTATGGAATCACTCATCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCAATGATGGAGAAATGAATTTATGGCGGGAATTAGGTGTCAATTCATGGCCAACATTTGTTCTTGTCGGGCCAAAATGGCAGCTCTTGGCACAAGTAGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341042" ref_strand="+" ref_description="SGN-E341042 [cTOE-22-E3]">
      <seq>ataagccttttgtggttgtgggggtgcattcagctaaatttgacaacgagaaggaccttgaagccatccgtagtgctgtattacgctatggaatcactcatccagttgtcaatgatggagaaatgaatttatggcgggaattaggtgtcaattcatggccaacatttgttcttgtcgggccaaatggcaagctcttggcacaagtagctggcgaaggtcatagaaaggatcttgataatttagtcgaggctgctcttctgttctatggtaagaagaagctcttggatagcaaacccattcccttgcgcttggagaaagataatgatccccgcttgttaacgtctcctttaaagttccccggtaagctggcagttgatgtcctcaacaaccggctatttatatcagacagcaatcataaccgaatagtagtaactgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="99135" stop="102067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99439" g_stop="99534" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="104" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99535" i_stop="100131" i_length="597">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100132" g_stop="100254" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="227" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100255" i_stop="101563" i_length="1309">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101564" g_stop="101761" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="425" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E341042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99439" e_stop="99534"/>
          <exon e_start="100132" e_stop="100254"/>
          <exon e_start="101564" e_stop="101761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGGTTGTGGGGGTGCATTCAGCTAAATTTGACAACGAGAAGGACCTTGAAGCCATCCGTAGTGCTGTATTACGCTATGGAATCACTCATCCAGTAAGTACTTATTCAAGAGCTGAACTATTACTGATTTTAGTGTTGAATGTCTCTTTACCACAATCTATCTGCTTGCTCTTGAATCTATTAGATCCCCAAGAAACGGATGAACATTTGGAAACAACATAAATGTGGAGAGAATTTAGAGCATCCAGATTAGGTTATATATTACTTCTTTTCGGTAGATTAAGGTAGAATGTCCGCTGCTATCTGCACCATACTTGGCTATGTTAAAATTGACATTCCAATCGTTAACACTGTCTTGACAGCCTCTCCCCCACCCTTCTGATCCAATTCAAATTTGTACCATCAAAGCCTCTGGGACTCCATGTATTTAACAGAAGGGAATACTTGCTAATTCACTGTTAATGGTCAAGGATTGCCTGACAATGTATGTAATCAACGTTTCCAATTGAAGCTCTTGTTTATTGCTGAAGTTTATTATTCAGATTGCAGATACTGGTGAATAGAGTAACTTGGAATTTGACATTGTTATCATTTCAAAATATCTGCTTTAGTTTTTAATTGGGGGTGTCTCTCCTTCTTCCCTTCTTTTTTGTATGTTAAGTAGTTTCTTAACCTTCATTGAATGATCAGGTTGTCAATGATGGAGAAATGAATTTATGGCGGGAATTAGGTGTCAATTCATGGCCAACATTTGTTCTTGTCGGGCCAAATGGCAAGCTCTTGGCACAAGTAGCTGGCGAAGGTCATAGAAAGGTTTCTTACAGATTTCCTTTTCTCTTTGATGTTTCATGCATTAGTATATATATATGAATTATTTAACACATTCGTGATGGCACATTTAAGATTAGATGATGGAAAATGGCTCATTTATTAACTTGACACTTGATGTAATTAATTCAATTCTGATATGCCTCTCAAAGTGCATTATCACAGAAAACTTTTGAGAGAATAGGTCATATTTCACTCTCTTTGATGAACTGTGTCACCAGCTCATCTAAAAGCTTAAGTTGTCAAGGAAAATATACTTTTATTTACTTAAAGTTGTCATTAACATGTCCCCTGTCATGTAGGCCGGACTGTTTTTTATTGGCCAAACATGTGGAAACTTTTTTTTTGATAATGGGTAGTGATGAGACTTGAAACTAGGATATTTGTCTACTCTGATACCATGTTGAACTATGTGATCAATTTATCTAAAAATTTGCAAACTATGTGATCAATTCATCTAAAAGTTTGCGATGTTAGAGAAAACCATGTTGAATTATGTGATCAAATCATTATTTTCCCCTTTCTTTGCATACATAACCGAAAGTTTATCCAGAACTTTCTTTGATCAGCCATTGAATCTCAAAAATCAAAACGAATTACTTCCATATGTAAATGCATAAGATGGAAATGTGGAAGGAGGAAAAAAGAATCTTCTGCAAATGTACTCCAAATTGAATGGAAAGATTGACCAGATCATAGCCAGTTCTTTTTGGTAGCTGACAGACCCTTATCTCTGACCTCAATGTGGCATTTCTCTATCATCTGAATTTTGAAAATATGTTTTCTATTATTAGTTTTGTGTAACCCAGGCTAGGAAAGTTTTGACATTTTAGGAAACTAAAAACTAGGTCACCTTTAATCGGAAACAACCTCTCTACCTCTGACGGTAGTGGTAAGGTCTGTGTATACTTTACCCTCCCTAGTTGTGAAAACTAGGTCACCTTTCCTTTATTATGAAACACTATTTTGTGTTTTTGTTTTTATTCTCTTTATCTCTTTTCTATTTCGAAGAAAATACTATAGAAACGTCTAAGCGCCTGCTATTGCCTAATCCGACTTCATAAAAGAATTTCTTTAGGCAGCTACTTATTGGAGTTTCTCCATTTGTCTTATCTTATGGCATGAAATTCCTTCAAATGAGATAATTTGTAACATTCAGTTTCTTGTGCTTTTAGATTATAGCAAATTGCCTCTCACATATTTCTTTCTAATTAATATGATCTGTGGCAGTTGGAAGTGAAGATTATTGACAAGATTTAGCTGTCATTTCGATGTCTTCTGCTTTGGTTTGTAGGATCTTGATAATTTAGTCGAGGCTGCTCTTCTGTTCTATGGTAAGAAGAAGCTCTTGGATAGCAAACCCATTCCCTTGCGCTTGGAGAAAGATAATGATCCCCGCTTGTTAACGTCTCCTTTAAAGTTCCCCGGTAAGCTGGCAGTTGATGTCCTCAACAACCGGCTATTTATATCAGACAGCAATCATAACCGAATA</genome_strand>
        <mrna_strand>TTTGTGGTTGTGGGGGTGCATTCAGCTAAATTTGACAACGAGAAGGACCTTGAAGCCATCCGTAGTGCTGTATTACGCTATGGAATCACTCATCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCAATGATGGAGAAATGAATTTATGGCGGGAATTAGGTGTCAATTCATGGCCAACATTTGTTCTTGTCGGGCCAAATGGCAAGCTCTTGGCACAAGTAGCTGGCGAAGGTCATAGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGATAATTTAGTCGAGGCTGCTCTTCTGTTCTATGGTAAGAAGAAGCTCTTGGATAGCAAACCCATTCCCTTGCGCTTGGAGAAAGATAATGATCCCCGCTTGTTAACGTCTCCTTTAAAGTTCCCCGGTAAGCTGGCAGTTGATGTCCTCAACAACCGGCTATTTATATCAGACAGCAATCATAACCGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312189" ref_strand="+" ref_description="SGN-E312189 [cTOA-11-J21]">
      <seq>agaaagataatgatccccgcttgttaacgtctcctttaaagttccccggtaagctggcagttgatgtcctcaacaaccggctatttatatcagacagcaatcataaccgaatagtagtaactgatctagaagggaactttttagtccaagttggaagcacaggagcagagggtcttcatgacggtaactttgatgatgcaacattcaatcgtccgcagggtcattgactttgtgaatgagacagtgcggacgcttgcgggaaatggaacaaaaggttctgattatgaagggggaggaactggaactgcacagcttctcaactctccatgggatgtctgctttgaacctgagaatgaaattgtctacatcgcaatggctggtcagcatcagatctgggaacacaaaacattggatggagttacaagagctttcagtgggaatggttatgagagaaatttgaatggctcaaggtaatgtgtgtgtgttagcttaactagagtttcagcagaacactggttaattgtgctagttttttatatgagattgaagtgtagtttattgattaattcttaaatgctatgatgctcactatcatcatctgtttgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="101349" stop="105752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101649" g_stop="101761" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101762" i_stop="102854" i_length="1093">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.703" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102855" g_stop="102959" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="218" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102960" i_stop="104889" i_length="1930">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104890" g_stop="104983" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="312" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104984" i_stop="105155" i_length="172">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105156" g_stop="105452" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="609" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E312189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101649" e_stop="101761"/>
          <exon e_start="102855" e_stop="102959"/>
          <exon e_start="104890" e_stop="104983"/>
          <exon e_start="105156" e_stop="105452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGATAATGATCCCCGCTTGTTAACGTCTCCTTTAAAGTTCCCCGGTAAGCTGGCAGTTGATGTCCTCAACAACCGGCTATTTATATCAGACAGCAATCATAACCGAATAGTAAGTTCTTCTTCTCTCTCCTTTCTGTATTCTCTCTGAATGATTGTTGTATCAGGTATTCAGGTTGCAAAATTTTGAATGTATGAACTGCAAGTAGTTGGTGTCTGTAGCATCAAGGTTTGTTAACCCTTTTTGAGGCTTTCTGGAGTTATGAATTGACCATGGGATTATTGAAGAAGATCAAGTTTGATGTTAATTGCATATTAGTTATCAATAAATGGAGGTATACCTACCTCTGAAAGTAAATGTATTCCCGACACTGGGGTTGCAGAACTTCCATGTCCACATTTACTGATATCTGAAAAAAGTTAAGTGTCAAAGCATGATCATTCATTTTCTAATATTTGCAAGAGGAAGCTACAGAAACAGAATGTATGATGAAAAGTCTAGGGCTATGCAGAAGATAAGATTAATCTTTTTACATTTTATCAGAAGGCAAGGGATAATATCACTTTAGTGTCAGAGCATGATCATTCATATTCTAATGCAGTGTACAGTAATGGTAACTTGGAGATGAAATAAAGAGTATATGCTTAAAAGTTTTTCCTGCTAATGGAGATCGGTGAGTGGTATATTTAAATTAGAACAAAGAATTAATATTTGAAGCCACTGCTAGGGCTGGCGAATATGGTAGAACCAAAATTCACGAGGAAGATGGAAAAAATGCGGAAGAGGATAAGGTAGGGCGCGAATAAGGAAGAGGATAAGAAATGTACATTTTGTTTCTTTTACTCGACTCTTACGGAACTGGTTCCTTCTTCTTTGTGGGAGACTCACAAGTTGTGTAGGAAATTATGTTTTCTTCTAGATACATTCTGGTTCTTCTTTGCTCTCTTCTGAACTTATTCATTCTGTTATTTAGTTCCTTCTTACATTTCCTAGTCTCAAGAACACGGCCATGTTTTCTCGTCTGATACTGTTTTCTTTTCCATACACTATCTCAGTAACTCGGAGTTGTAGTATCACATCTGTTCTGGTCCTTCATGCTTTTGGCCTGTACGAGCCCTAGATCTTAGTCTTCTTTCTATTTCCATGCTCTCTTTATGAGGTGAATGGTAGAATTAGTAATCCCGGACAATTTTCACATGGACAGGTAGTAACTGATCTAGAAGGGAACTTTTTAGTCCAAGTTGGAAGCACAGGAGCAGAGGGTCTTCATGACGGTAACTTTGATGATGCAACATTCAATCGTCCGCAGGTAACTCTTTTAATTTTTCAATTTTTTCCATTTGCAAAATTAATCTAAGATCTTAATTCTTATTATATCTTCAGGGTTTGGCTTACAATGCAAAGAAGAACCTCTTGTATGTGGCAGATACTGAAAATCATGCTTTAAGGTACAGGCAGAAAGGGAATGCCTGTTATTGGGCTAGACATACATGGTTTATTTTCTGAATTCTCCGTTTATACACGTATTTTCCTTGAAGTATAGATGCTTGTGCCCCCATCTTTGAGAAGTTGAGGAGGATAAACTTGAACTTTGATGGGTTTATTGATACTGATTATTGCCGGGGGGAAGGGAACACATGGATTCACCAAGGGTATATTATTTATTTTATCTTTCTTCCTAGAAATTGGAATATTTTGTGCTATAGTGGGTATCTCCTCAGTTTACATTAAGTAGTTTGATGAAACATGGAGATCTTTAGTAAACTTGAGCTGCATATTTTATTAGTCGCAATAGGATACAAGATGGTAAAGTAGTTGTTGAAAGCTACTCATTGTTTGAATATAATGGCCTAAATTTTTTTCTTTTAAATTCATTTAAACTTTGATGCCATTTTTTTAGTTGGAATTGGTATTCCTCAACTCAAGATTACAAAGGCAGAATCTAAATATTTCAAAGCTTGTAACTTTACATTGTTGATAACCACCCCTATAATTTTTATTCTGTACTTTTTAATTAGGTGCTCCTTTTCATTTAATTTTTAGTTTGGTTTTGACCAATCTATTGGTAGCTGACAGAAAAGAGAGACCACATATGTGGATAATAATTGCTTCATTAGGTTTGAAGTTCACTTTAGGAATCTTCATATACGGCGTTTCCAGAACTGGTTGATTTTTCGACAAGGTCAAACTAAACCATGAATAATTGATTACATTTGACTTTTTTTGACGACATGACTTTTTTTGACAGGTCTTCATATCCTTTCCTGGCAAAAAGATTTGGGAAATTTAGTTTTATTAACAGGAGAACTTTAATAGTTGTTCTATTTTTTCCTCAAGTTAGTTCGTACTGTCAAAACAGTAAGAAAAACTAGTGGAAACGAAGATACTTAAAAAGCTTGTTGAAAAGAATGTTCTGGAAACAAAGAACCAGAAGATATTAGAACATAACCACAGAATAAAAAGCAACTGAAATTAAGAAAAAGAAAATGATGAATAAGACATGTTCCACAACTGGTGGGAAACAGGAGTAGAACTACTCACCATAGGGTGGATGCAAGGGGAAAAAGAGAGATTTCTTGAGCTTGGGCGAGGGAGCTGGTAGGCTGGGTTAGCTTGTTTGGTTGGAGTTGACAGGGATCGCCATCAGGCCACGGTGAGATAATGGTCTTGATCTTTTTGCTGATGAAGAATATGTTGGAAATATTAGTGGAGTAAGGATGCGGATAAGTCAAGGAAGGAGAAGGAGCAGGAGAAAATGGATTGGATTGAGGATGAGGGAATACTAAGGAAAATGTTTGCCTTTATCATTAGATTTGGAGGTAAAGTAGTCTTTAAGGACCAAATCCGACTCTTCAAATTAGTATCTCATCCACCGGATGATATGATGCCAAATTACACTGATAAGTTTCCTCAATTCACTCTGGTATACATACATATTCCTTTCCTTTCCTCTATGCTGTCAATTTGGATACTCATTATCATTCTGTAGTCTAAAAGATTAACCTGACAGCCAAAATATCCCCTCTTCCTAAATCATCCTTGTTCCCATTTGAAATTCATTCAAAAACTTTTTTAACTTCTTATTTATATTTGTATTTTGAGAGATGGAAGTTTTTACTTCAATTTCCTTTTTAGTTGGGCTTGATGTGCTTATAGCTTTTTTATGAGATTATAATTTTTCTTTACCTAGATAATTTAAGGAAGCTTTTAGTTTAACCTATTGAGTTCCATTACTGTAGGGTCATTGACTTTGTGAATGAGACAGTGCGGACGCTTGCGGGAAATGGAACAAAAGGTTCTGATTATGAAGGGGGAGGAACTGGAACTGCACAGGCAAGATTGGATTAAATTAAATAATAACTTGGTCATCAACTGGTTCCAGTTAGCTCTAGCTTATCGCATATGTAGTTTTATGCTCTAATTTTATCTCTCTTTAATCAATTTCAAATATATTGTGAATTATCCTTTTTTCCTTGGAACTGAACATCATTGGTCATATTTTCAGCTTCTCAACTCTCCATGGGATGTCTGCTTTGAACCTGAGAATGAAATTGTCTACATCGCAATGGCTGGTCAGCATCAGATCTGGGAACACAAAACATTGGATGGAGTTACAAGAGCTTTCAGTGGGAATGGTTATGAGAGAAATTTGAATGGCTCAAGGTAATGTGTGTGTGTTAGCTTAACTAGAGTTTCAGCAGAACACTGGTTAATTGTGCTAGTTTTTTATATGAGATTGAAGTGTAGTTTATTGATTAATTCTTAAATGCTATGATGCTCACTATCATCATCTGTTTGTCAC</genome_strand>
        <mrna_strand>AGAAAGATAATGATCCCCGCTTGTTAACGTCTCCTTTAAAGTTCCCCGGTAAGCTGGCAGTTGATGTCCTCAACAACCGGCTATTTATATCAGACAGCAATCATAACCGAATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTAACTGATCTAGAAGGGAACTTTTTAGTCCAAGTTGGAAGCACAGGAGCAGAGGGTCTTCATGACGGTAACTTTGATGATGCAACATTCAATCGTCCGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGACTTTGTGAATGAGACAGTGCGGACGCTTGCGGGAAATGGAACAAAAGGTTCTGATTATGAAGGGGGAGGAACTGGAACTGCACAG............................................................................................................................................................................CTTCTCAACTCTCCATGGGATGTCTGCTTTGAACCTGAGAATGAAATTGTCTACATCGCAATGGCTGGTCAGCATCAGATCTGGGAACACAAAACATTGGATGGAGTTACAAGAGCTTTCAGTGGGAATGGTTATGAGAGAAATTTGAATGGCTCAAGGTAATGTGTGTGTGTTAGCTTAACTAGAGTTTCAGCAGAACACTGGTTAATTGTGCTAGTTTTTTATATGAGATTGAAGTGTAGTTTATTGATTAATTCTTAAATGCTATGATGCTCACTATCATCATCTGTTTGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264537" ref_strand="+" ref_description="SGN-E264537 [cLEG-67-O16]">
      <seq>aaatgtacattttgtttcttttactcgactcttacggaactggttccttcttctttgtgggagactcacaagttgtgtaggaaattatgttttcttctagatacattctggttcttctttgctctcttctgaacttattcattctgttatttagttccttcttacatttcctagtctcaagaacacggccatgttttctcgtctgatactgttttcttttccatacactatctcagtaactcggagttgtagtatcacatctgttctggtccttcatgcttttggcctgtagtaactgatctagaagggaactttttagtccaagttggaagcacaggagcagagggtcttcatgacggtaactttgatgatgcaacattcaatcgtccgcagggtttggcttacaatgcaaagaagaacctcttgtatgtggcagatactgaaaatcatgctttaagggtcattgactttgtgaatgagacagtgcggacgcttgcgggaaatggaacaaaaggttctgattatgaagggggaggaactggaactgcacagcttctcaactctccatgggatgtctgctttgaacctgagaatgaaattgtctacatcgcaatggctggtcagcatcagatctgggaaacacaaacattggatggagttacaagagctttcagtgggaatggttatgagagaaatttgaatggctcaagctctacaagcacgtcatttgcacaaccttctgggatttccttgtcacgagatcttaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="102170" stop="106590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102470" g_stop="102757" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102758" i_stop="102854" i_length="97">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.703" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102855" g_stop="102959" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="393" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102960" i_stop="103033" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103034" g_stop="103098" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="458" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103099" i_stop="104889" i_length="1791">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104890" g_stop="104983" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="552" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104984" i_stop="105155" i_length="172">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105156" g_stop="105313" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="710" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105314" i_stop="106238" i_length="925">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106239" g_stop="106288" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="760" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E264537" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102470" e_stop="102757"/>
          <exon e_start="102855" e_stop="102959"/>
          <exon e_start="103034" e_stop="103098"/>
          <exon e_start="104890" e_stop="104983"/>
          <exon e_start="105156" e_stop="105313"/>
          <exon e_start="106239" e_stop="106288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTACATTTTGTTTCTTTTACTCGACTCTTACGGAACTGGTTCCTTCTTCTTTGTGGGAGACTCACAAGTTGTGTAGGAAATTATGTTTTCTTCTAGATACATTCTGGTTCTTCTTTGCTCTCTTCTGAACTTATTCATTCTGTTATTTAGTTCCTTCTTACATTTCCTAGTCTCAAGAACACGGCCATGTTTTCTCGTCTGATACTGTTTTCTTTTCCATACACTATCTCAGTAACTCGGAGTTGTAGTATCACATCTGTTCTGGTCCTTCATGCTTTTGGCCTGTACGAGCCCTAGATCTTAGTCTTCTTTCTATTTCCATGCTCTCTTTATGAGGTGAATGGTAGAATTAGTAATCCCGGACAATTTTCACATGGACAGGTAGTAACTGATCTAGAAGGGAACTTTTTAGTCCAAGTTGGAAGCACAGGAGCAGAGGGTCTTCATGACGGTAACTTTGATGATGCAACATTCAATCGTCCGCAGGTAACTCTTTTAATTTTTCAATTTTTTCCATTTGCAAAATTAATCTAAGATCTTAATTCTTATTATATCTTCAGGGTTTGGCTTACAATGCAAAGAAGAACCTCTTGTATGTGGCAGATACTGAAAATCATGCTTTAAGGTACAGGCAGAAAGGGAATGCCTGTTATTGGGCTAGACATACATGGTTTATTTTCTGAATTCTCCGTTTATACACGTATTTTCCTTGAAGTATAGATGCTTGTGCCCCCATCTTTGAGAAGTTGAGGAGGATAAACTTGAACTTTGATGGGTTTATTGATACTGATTATTGCCGGGGGGAAGGGAACACATGGATTCACCAAGGGTATATTATTTATTTTATCTTTCTTCCTAGAAATTGGAATATTTTGTGCTATAGTGGGTATCTCCTCAGTTTACATTAAGTAGTTTGATGAAACATGGAGATCTTTAGTAAACTTGAGCTGCATATTTTATTAGTCGCAATAGGATACAAGATGGTAAAGTAGTTGTTGAAAGCTACTCATTGTTTGAATATAATGGCCTAAATTTTTTTCTTTTAAATTCATTTAAACTTTGATGCCATTTTTTTAGTTGGAATTGGTATTCCTCAACTCAAGATTACAAAGGCAGAATCTAAATATTTCAAAGCTTGTAACTTTACATTGTTGATAACCACCCCTATAATTTTTATTCTGTACTTTTTAATTAGGTGCTCCTTTTCATTTAATTTTTAGTTTGGTTTTGACCAATCTATTGGTAGCTGACAGAAAAGAGAGACCACATATGTGGATAATAATTGCTTCATTAGGTTTGAAGTTCACTTTAGGAATCTTCATATACGGCGTTTCCAGAACTGGTTGATTTTTCGACAAGGTCAAACTAAACCATGAATAATTGATTACATTTGACTTTTTTTGACGACATGACTTTTTTTGACAGGTCTTCATATCCTTTCCTGGCAAAAAGATTTGGGAAATTTAGTTTTATTAACAGGAGAACTTTAATAGTTGTTCTATTTTTTCCTCAAGTTAGTTCGTACTGTCAAAACAGTAAGAAAAACTAGTGGAAACGAAGATACTTAAAAAGCTTGTTGAAAAGAATGTTCTGGAAACAAAGAACCAGAAGATATTAGAACATAACCACAGAATAAAAAGCAACTGAAATTAAGAAAAAGAAAATGATGAATAAGACATGTTCCACAACTGGTGGGAAACAGGAGTAGAACTACTCACCATAGGGTGGATGCAAGGGGAAAAAGAGAGATTTCTTGAGCTTGGGCGAGGGAGCTGGTAGGCTGGGTTAGCTTGTTTGGTTGGAGTTGACAGGGATCGCCATCAGGCCACGGTGAGATAATGGTCTTGATCTTTTTGCTGATGAAGAATATGTTGGAAATATTAGTGGAGTAAGGATGCGGATAAGTCAAGGAAGGAGAAGGAGCAGGAGAAAATGGATTGGATTGAGGATGAGGGAATACTAAGGAAAATGTTTGCCTTTATCATTAGATTTGGAGGTAAAGTAGTCTTTAAGGACCAAATCCGACTCTTCAAATTAGTATCTCATCCACCGGATGATATGATGCCAAATTACACTGATAAGTTTCCTCAATTCACTCTGGTATACATACATATTCCTTTCCTTTCCTCTATGCTGTCAATTTGGATACTCATTATCATTCTGTAGTCTAAAAGATTAACCTGACAGCCAAAATATCCCCTCTTCCTAAATCATCCTTGTTCCCATTTGAAATTCATTCAAAAACTTTTTTAACTTCTTATTTATATTTGTATTTTGAGAGATGGAAGTTTTTACTTCAATTTCCTTTTTAGTTGGGCTTGATGTGCTTATAGCTTTTTTATGAGATTATAATTTTTCTTTACCTAGATAATTTAAGGAAGCTTTTAGTTTAACCTATTGAGTTCCATTACTGTAGGGTCATTGACTTTGTGAATGAGACAGTGCGGACGCTTGCGGGAAATGGAACAAAAGGTTCTGATTATGAAGGGGGAGGAACTGGAACTGCACAGGCAAGATTGGATTAAATTAAATAATAACTTGGTCATCAACTGGTTCCAGTTAGCTCTAGCTTATCGCATATGTAGTTTTATGCTCTAATTTTATCTCTCTTTAATCAATTTCAAATATATTGTGAATTATCCTTTTTTCCTTGGAACTGAACATCATTGGTCATATTTTCAGCTTCTCAACTCTCCATGGGATGTCTGCTTTGAACCTGAGAATGAAATTGTCTACATCGCAATGGCTGGTCAGCATCAGATCTGGG-AACACAAAACATTGGATGGAGTTACAAGAGCTTTCAGTGGGAATGGTTATGAGAGAAATTTGAATGGCTCAAGGTAATGTGTGTGTGTTAGCTTAACTAGAGTTTCAGCAGAACACTGGTTAATTGTGCTAGTTTTTTATATGAGATTGAAGTGTAGTTTATTGATTAATTCTTAAATGCTATGATGCTCACTATCATCATCTGTTTGTCACACTTTCTTTTGTGGTGCTTTTTACTTCTAAACTAGTTTCCAAGCCTTTTTGAAGAAAAGGGTTTCCCCCTTTTTATTAGAAAAAAGATCCATGTGTTAATCTAGCGCGAGGGAGAACCAACTGAGGACCAGATCTTTCACTGATAAACAAAGACAGAAACAAACTGCAGTTCACACTTTTTTGATTCACTGCTTTACACTTGCTCTATAAATCTATCAGCGTAGTCATATTTTAGGACTGCATAGATATGTCTCTTCTTTTGACTTGCCCGTGTTCTAAAAGATCTCTCATATTTATTAGTGATAACAGTAAGAGTTTTTATAGACTGCACTCTTTTGGCATGGTAAGATCAATTTTCTTCTGAAGGTTCCATTATGAATTTGGAACCCATGTTCTGTGGACTTCTAACATTATCATCTAACATAATTCATTGGAACATGAAGAGTACAAAAGCTAACCCACACTCAAAGGAATAGATATCCCTTTTGGTCATGAATCTTGATAATGTGCTCTGGATATGGTTACTATTACTTCCTAGTAACACTTGGTGAAAATAATGGATCTCCATGAATCAGCAGGAGCTTCAGTCAAAAGACAACAGGGATTAAACTAATGTAATTTGGAGAGGAGAAACCGGCTTTGTGCTTTTAGTTTTTGGGTTTTGACTTCTTTCATTGTATCTCTTGTCCTTGTATGTGTTGGTTGTGAGAACATATCCTTTTAGCCACTTACTTTTGACGAACTTGCTGATGTTTACGGATCATCTTCTTCTTGGCCATGGGAAAGCTCTACAAGCACGTCATTTGCACAACCTTCTGGGATTTCCTTGTCACGAG</genome_strand>
        <mrna_strand>AAATGTACATTTTGTTTCTTTTACTCGACTCTTACGGAACTGGTTCCTTCTTCTTTGTGGGAGACTCACAAGTTGTGTAGGAAATTATGTTTTCTTCTAGATACATTCTGGTTCTTCTTTGCTCTCTTCTGAACTTATTCATTCTGTTATTTAGTTCCTTCTTACATTTCCTAGTCTCAAGAACACGGCCATGTTTTCTCGTCTGATACTGTTTTCTTTTCCATACACTATCTCAGTAACTCGGAGTTGTAGTATCACATCTGTTCTGGTCCTTCATGCTTTTGGCCT.................................................................................................GTAGTAACTGATCTAGAAGGGAACTTTTTAGTCCAAGTTGGAAGCACAGGAGCAGAGGGTCTTCATGACGGTAACTTTGATGATGCAACATTCAATCGTCCGCAG..........................................................................GGTTTGGCTTACAATGCAAAGAAGAACCTCTTGTATGTGGCAGATACTGAAAATCATGCTTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGACTTTGTGAATGAGACAGTGCGGACGCTTGCGGGAAATGGAACAAAAGGTTCTGATTATGAAGGGGGAGGAACTGGAACTGCACAG............................................................................................................................................................................CTTCTCAACTCTCCATGGGATGTCTGCTTTGAACCTGAGAATGAAATTGTCTACATCGCAATGGCTGGTCAGCATCAGATCTGGGAAACAC-AAACATTGGATGGAGTTACAAGAGCTTTCAGTGGGAATGGTTATGAGAGAAATTTGAATGGCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTACAAGCACGTCATTTGCACAACCTTCTGGGATTTCCTTGTCACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738591" ref_strand="+" ref_description="SGN-E738591 [LC14BA01]">
      <seq>cgatgcacaggagcagagggtcttcatgacggtaactttgatgatgcaacattcaatcgtccgcagggtttggcttacaatgcaaagaagaacctcttgtatgtggcagatactgaaaatcatgctttaagggtcattgactttgtgaatgagacagtgcggacgcttgcgggaaatggaacaaaaggttctgattatgaagggggaggaactggaactgcacagcttctcaactctccatgggatgtctgctttgaacctgagaatgaaattgtctacatcgcaatggctggtcagcatcagatctgggaacacaaaacattggatggagttacaagagctttcagtgggaatggttatgagagaaatttgaatggctcaaggtaatgtgtgtgtgttagcttaactagagtttcagcagaacactggttaattgtgctagttttttatatgagattgaagtgtagtttattgattaattcttaaatgctatgatgctcactatcatcatctgtttgtcacactttcttttgtggtgctttttacttctaaactagtttccaagcctttttgaagaaaagggtttccccctttttattagaaaaaagatccatgtgttaatctagcgcgagggagaaccaactgaggaccagatctttcactgataaacaaagacagaaacaaactgcagttcacacttttttgattcactgctttacacttgctctataaatctatcagcgtagtcatattttaggactgcatagatatgtctcttcttttgacttgcccgtgttctaaaagatctctcatatttattagtgataacagtaagagtttttatagactgcactcttttggcatggtaagatcaattttcttctgaaggtttcattatgaatttggaacccatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="102595" stop="106147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102894" g_stop="102959" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102960" i_stop="103033" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103034" g_stop="103098" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="131" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103099" i_stop="104889" i_length="1791">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104890" g_stop="104983" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="225" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104984" i_stop="105155" i_length="172">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105156" g_stop="105847" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="917" r_length="692" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E738591" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102894" e_stop="102959"/>
          <exon e_start="103034" e_stop="103098"/>
          <exon e_start="104890" e_stop="104983"/>
          <exon e_start="105156" e_stop="105847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCACAGGAGCAGAGGGTCTTCATGACGGTAACTTTGATGATGCAACATTCAATCGTCCGCAGGTAACTCTTTTAATTTTTCAATTTTTTCCATTTGCAAAATTAATCTAAGATCTTAATTCTTATTATATCTTCAGGGTTTGGCTTACAATGCAAAGAAGAACCTCTTGTATGTGGCAGATACTGAAAATCATGCTTTAAGGTACAGGCAGAAAGGGAATGCCTGTTATTGGGCTAGACATACATGGTTTATTTTCTGAATTCTCCGTTTATACACGTATTTTCCTTGAAGTATAGATGCTTGTGCCCCCATCTTTGAGAAGTTGAGGAGGATAAACTTGAACTTTGATGGGTTTATTGATACTGATTATTGCCGGGGGGAAGGGAACACATGGATTCACCAAGGGTATATTATTTATTTTATCTTTCTTCCTAGAAATTGGAATATTTTGTGCTATAGTGGGTATCTCCTCAGTTTACATTAAGTAGTTTGATGAAACATGGAGATCTTTAGTAAACTTGAGCTGCATATTTTATTAGTCGCAATAGGATACAAGATGGTAAAGTAGTTGTTGAAAGCTACTCATTGTTTGAATATAATGGCCTAAATTTTTTTCTTTTAAATTCATTTAAACTTTGATGCCATTTTTTTAGTTGGAATTGGTATTCCTCAACTCAAGATTACAAAGGCAGAATCTAAATATTTCAAAGCTTGTAACTTTACATTGTTGATAACCACCCCTATAATTTTTATTCTGTACTTTTTAATTAGGTGCTCCTTTTCATTTAATTTTTAGTTTGGTTTTGACCAATCTATTGGTAGCTGACAGAAAAGAGAGACCACATATGTGGATAATAATTGCTTCATTAGGTTTGAAGTTCACTTTAGGAATCTTCATATACGGCGTTTCCAGAACTGGTTGATTTTTCGACAAGGTCAAACTAAACCATGAATAATTGATTACATTTGACTTTTTTTGACGACATGACTTTTTTTGACAGGTCTTCATATCCTTTCCTGGCAAAAAGATTTGGGAAATTTAGTTTTATTAACAGGAGAACTTTAATAGTTGTTCTATTTTTTCCTCAAGTTAGTTCGTACTGTCAAAACAGTAAGAAAAACTAGTGGAAACGAAGATACTTAAAAAGCTTGTTGAAAAGAATGTTCTGGAAACAAAGAACCAGAAGATATTAGAACATAACCACAGAATAAAAAGCAACTGAAATTAAGAAAAAGAAAATGATGAATAAGACATGTTCCACAACTGGTGGGAAACAGGAGTAGAACTACTCACCATAGGGTGGATGCAAGGGGAAAAAGAGAGATTTCTTGAGCTTGGGCGAGGGAGCTGGTAGGCTGGGTTAGCTTGTTTGGTTGGAGTTGACAGGGATCGCCATCAGGCCACGGTGAGATAATGGTCTTGATCTTTTTGCTGATGAAGAATATGTTGGAAATATTAGTGGAGTAAGGATGCGGATAAGTCAAGGAAGGAGAAGGAGCAGGAGAAAATGGATTGGATTGAGGATGAGGGAATACTAAGGAAAATGTTTGCCTTTATCATTAGATTTGGAGGTAAAGTAGTCTTTAAGGACCAAATCCGACTCTTCAAATTAGTATCTCATCCACCGGATGATATGATGCCAAATTACACTGATAAGTTTCCTCAATTCACTCTGGTATACATACATATTCCTTTCCTTTCCTCTATGCTGTCAATTTGGATACTCATTATCATTCTGTAGTCTAAAAGATTAACCTGACAGCCAAAATATCCCCTCTTCCTAAATCATCCTTGTTCCCATTTGAAATTCATTCAAAAACTTTTTTAACTTCTTATTTATATTTGTATTTTGAGAGATGGAAGTTTTTACTTCAATTTCCTTTTTAGTTGGGCTTGATGTGCTTATAGCTTTTTTATGAGATTATAATTTTTCTTTACCTAGATAATTTAAGGAAGCTTTTAGTTTAACCTATTGAGTTCCATTACTGTAGGGTCATTGACTTTGTGAATGAGACAGTGCGGACGCTTGCGGGAAATGGAACAAAAGGTTCTGATTATGAAGGGGGAGGAACTGGAACTGCACAGGCAAGATTGGATTAAATTAAATAATAACTTGGTCATCAACTGGTTCCAGTTAGCTCTAGCTTATCGCATATGTAGTTTTATGCTCTAATTTTATCTCTCTTTAATCAATTTCAAATATATTGTGAATTATCCTTTTTTCCTTGGAACTGAACATCATTGGTCATATTTTCAGCTTCTCAACTCTCCATGGGATGTCTGCTTTGAACCTGAGAATGAAATTGTCTACATCGCAATGGCTGGTCAGCATCAGATCTGGGAACACAAAACATTGGATGGAGTTACAAGAGCTTTCAGTGGGAATGGTTATGAGAGAAATTTGAATGGCTCAAGGTAATGTGTGTGTGTTAGCTTAACTAGAGTTTCAGCAGAACACTGGTTAATTGTGCTAGTTTTTTATATGAGATTGAAGTGTAGTTTATTGATTAATTCTTAAATGCTATGATGCTCACTATCATCATCTGTTTGTCACACTTTCTTTTGTGGTGCTTTTTACTTCTAAACTAGTTTCCAAGCCTTTTTGAAGAAAAGGGTTTCCCCCTTTTTATTAGAAAAAAGATCCATGTGTTAATCTAGCGCGAGGGAGAACCAACTGAGGACCAGATCTTTCACTGATAAACAAAGACAGAAACAAACTGCAGTTCACACTTTTTTGATTCACTGCTTTACACTTGCTCTATAAATCTATCAGCGTAGTCATATTTTAGGACTGCATAGATATGTCTCTTCTTTTGACTTGCCCGTGTTCTAAAAGATCTCTCATATTTATTAGTGATAACAGTAAGAGTTTTTATAGACTGCACTCTTTTGGCATGGTAAGATCAATTTTCTTCTGAAGGTTCCATTATGAATTTGGAACCCATGTTC</genome_strand>
        <mrna_strand>CGATGCACAGGAGCAGAGGGTCTTCATGACGGTAACTTTGATGATGCAACATTCAATCGTCCGCAG..........................................................................GGTTTGGCTTACAATGCAAAGAAGAACCTCTTGTATGTGGCAGATACTGAAAATCATGCTTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATTGACTTTGTGAATGAGACAGTGCGGACGCTTGCGGGAAATGGAACAAAAGGTTCTGATTATGAAGGGGGAGGAACTGGAACTGCACAG............................................................................................................................................................................CTTCTCAACTCTCCATGGGATGTCTGCTTTGAACCTGAGAATGAAATTGTCTACATCGCAATGGCTGGTCAGCATCAGATCTGGGAACACAAAACATTGGATGGAGTTACAAGAGCTTTCAGTGGGAATGGTTATGAGAGAAATTTGAATGGCTCAAGGTAATGTGTGTGTGTTAGCTTAACTAGAGTTTCAGCAGAACACTGGTTAATTGTGCTAGTTTTTTATATGAGATTGAAGTGTAGTTTATTGATTAATTCTTAAATGCTATGATGCTCACTATCATCATCTGTTTGTCACACTTTCTTTTGTGGTGCTTTTTACTTCTAAACTAGTTTCCAAGCCTTTTTGAAGAAAAGGGTTTCCCCCTTTTTATTAGAAAAAAGATCCATGTGTTAATCTAGCGCGAGGGAGAACCAACTGAGGACCAGATCTTTCACTGATAAACAAAGACAGAAACAAACTGCAGTTCACACTTTTTTGATTCACTGCTTTACACTTGCTCTATAAATCTATCAGCGTAGTCATATTTTAGGACTGCATAGATATGTCTCTTCTTTTGACTTGCCCGTGTTCTAAAAGATCTCTCATATTTATTAGTGATAACAGTAAGAGTTTTTATAGACTGCACTCTTTTGGCATGGTAAGATCAATTTTCTTCTGAAGGTTTCATTATGAATTTGGAACCCATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541501" ref_strand="+" ref_description="SGN-E541501 [TUS-62-F5]">
      <seq>tgatatacaccagagattcattaatactttttgcaatgtctcattgacaagttaaaccaggaaactggagattttttttgtaagctcaaacgtcatatcttgtaaatcttgcatcttctggatgctgtaattaataccacttatcttatcaaaaaaaaaaaaccaagaagatgttccctgcaatggcaatgttattccagaatttgagatccaagtcttaagtgttgagttagatcgtacctttgtttgtatctctgtgttcatgttaaaaaatgtaacagctgatacttgtatttgatgctattttatacaacctttttaggaagattgtacatagcagatacaaataacagtgtgataagatacttagatctgaacaagtcagaagctgaagttcttactttggagttgaaaggagtgcagcctccacttaaatccagatctttgaagcgccttagacgtcgatctggagctgacacacagactattgtagttaatggtggttcatccagtgagggtacattgaacttaagaatctcggtacctgaaggataccatttctccaaggaagcgaagagtaaatttagcatagattttgagccagataatgctgctgaggttgattccttggagggaaatctcagcccagaaggttcagcagttgtgcacttcagaagatcttctgcttcaccaaccaccggcagagtttattgcaaggtatactattgcaaagaagatgaagtttgcttgtaccagccattgacctttgaagtaccatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="110247" stop="112493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110547" g_stop="111113" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111114" i_stop="111244" i_length="131">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111245" g_stop="111394" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="717" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111395" i_stop="112129" i_length="735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112130" g_stop="112193" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="781" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E541501" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110547" e_stop="111113"/>
          <exon e_start="111245" e_stop="111394"/>
          <exon e_start="112130" e_stop="112193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATACACCAGAGATTCATTAATACTTTTTGCAATGTCTCATTGACAAGTTAAACCAGGAAACTGGAGATTTTTTTTGTAAGCTCAAACGTCATATCTTGTAAATCTTGCATCTTCTGGATGCTGTAATTAATACCACTTATCTTATCAAAAAAAAAAAACCAAGAAGATGTTCCCTGCAATGGCAATGTTATTCCAGAATTTGAGATCCAAGTCTTAAGTGTTGAGTTAGATCGTACCTTTGTTTGTATCTCTGTGTTCATGTTAAAAAATGTAACAGCTGATACTTGTATTTGATGCTATTTTATACAACCTTTTTAGGAAGATTGTACATAGCAGATACAAATAACAGTGTGATAAGATACTTAGATCTGAACAAGTCAGAAGCTGAAGTTCTTACTTTGGAGTTGAAAGGAGTGCAGCCTCCACTTAAATCCAGATCTTTGAAGCGCCTTAGACGTCGATCTGGAGCTGACACACAGACTATTGTAGTTAATGGTGGTTCATCCAGTGAGGGTACATTGAACTTAAGAATCTCGGTACCTGAAGGATACCATTTCTCCAAGGTTTTCTTTCTCTCTTCTGAACAAATTGATTAAGAAAATAGGAACAGCATTTCCTTCCCTTTGAATTTACCACCTCAGTATGTCCCTGTTTATTTTGCCTCATAGGCTTTTCTGCCTTATACCAAATGCAGGAAGCGAAGAGTAAATTTAGCATAGATTTTGAGCCAGATAATGCTGCTGAGGTTGATTCCTTGGAGGGAAATCTCAGCCCAGAAGGTTCAGCAGTTGTGCACTTCAGAAGATCTTCTGCTTCACCAACCACCGGCAGAGTTTATTGCAAGGTATGATTATCTGTTTGAATATATCTTTTAAGTTTTACTGTAGTTTAGTGAAGTTTGTGGCCTGCATTTACCTCCTTAGCCATGCGTATCTATATTCAGCCATTTATTAAAGAAGACTATGCCAGGCAATATTTTGAGCAAAATAAAGCATCAGTGCTTTGGAAATGATTTTGACTTGATATATATATGCTTTCAAGTAGCCATTTGTTAGTAGCATCTCATGTAACGTTTGTACCTTGCTTCATGAAATTGACAATATGCTCTCCTTATAAGCATATAATGCCATGGCTCATGTGCTATGTGATATCTTCAGTCTACCAAAGCAATATGTGCTAATGCCAGAATTGATAATATAGATTTGTTCCCTAAGGACGTACTTACAAAAATTAACTTGAGAGGCACACAAACTTATTTGAAGGCCGTGTACCTGGGCGCAAATTCACCACGTTAGACCAGCAGTGTGTTAGTAGCATCTCATTTAGTGTTTGTACCTACCTTTAGCCCGATGCTATCACTTTCCTAGTCTGTAATGGTCCATCTTAGAGTTACATTTTCAATGAGTACTATAGCCACTTCCAATTTCAGATACTCATTTCAATGTGTTAGTAGCATCTCGTGTAGTGTTTGTATACCTACCTTTAGCCTGATGAGAATGCTTTCACTTTCCTAGTTTATAATGGTCCATCTTAGTGTTGTTACATTTTCAATGAGTACTATTGTCACTTCCAATTTCAGGTATACTATTGCAAAGAAGATGAGGTTTGCTTGTACCAGCCATTGACCTTTGAAGTACCATTTC</genome_strand>
        <mrna_strand>TGATATACACCAGAGATTCATTAATACTTTTTGCAATGTCTCATTGACAAGTTAAACCAGGAAACTGGAGATTTTTTTTGTAAGCTCAAACGTCATATCTTGTAAATCTTGCATCTTCTGGATGCTGTAATTAATACCACTTATCTTATCAAAAAAAAAAAACCAAGAAGATGTTCCCTGCAATGGCAATGTTATTCCAGAATTTGAGATCCAAGTCTTAAGTGTTGAGTTAGATCGTACCTTTGTTTGTATCTCTGTGTTCATGTTAAAAAATGTAACAGCTGATACTTGTATTTGATGCTATTTTATACAACCTTTTTAGGAAGATTGTACATAGCAGATACAAATAACAGTGTGATAAGATACTTAGATCTGAACAAGTCAGAAGCTGAAGTTCTTACTTTGGAGTTGAAAGGAGTGCAGCCTCCACTTAAATCCAGATCTTTGAAGCGCCTTAGACGTCGATCTGGAGCTGACACACAGACTATTGTAGTTAATGGTGGTTCATCCAGTGAGGGTACATTGAACTTAAGAATCTCGGTACCTGAAGGATACCATTTCTCCAAG...................................................................................................................................GAAGCGAAGAGTAAATTTAGCATAGATTTTGAGCCAGATAATGCTGCTGAGGTTGATTCCTTGGAGGGAAATCTCAGCCCAGAAGGTTCAGCAGTTGTGCACTTCAGAAGATCTTCTGCTTCACCAACCACCGGCAGAGTTTATTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTATTGCAAAGAAGATGAAGTTTGCTTGTACCAGCCATTGACCTTTGAAGTACCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297779" ref_strand="+" ref_description="SGN-E297779 [cLET-38-K14]">
      <seq>gatatacaccagagattcattaatactttttgcaatgtctcattgacaagttaaaccaggaaactggagattttttttgtaagctcaaacgtcatatcttgtaaatcttgcatcttctggatgctgtaattaataccacttatcttatcaaaaaaaaaaaaccaagaagatgttccctgcaatggcaatgttattccagaatttgagatccaagtcttaagtgttgagttagatcgtacctttgtttgtatctctgtgttcatgttaaaaaatgtaacagctgatacttgtatttgatgctattttatacaacctttttaggaagattgtacatagcagatacaaataacagtgtgataagatacttagatctgaacaagtcagaagctgaagttcttactttggagttgaaaggagtgcagcctccacttaaatccagatctttgaagcgccttagacgtcgatctggagctgacacacagactattgtagttaatggtggttcatccagtgagggtacattgaacttaagaatctcggtacctgaaggataccatttctccaaggaagcgaagagtaaatttagcatagattttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="110248" stop="111577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110548" g_stop="111113" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111114" i_stop="111244" i_length="131">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111245" g_stop="111277" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="599" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E297779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110548" e_stop="111113"/>
          <exon e_start="111245" e_stop="111277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATACACCAGAGATTCATTAATACTTTTTGCAATGTCTCATTGACAAGTTAAACCAGGAAACTGGAGATTTTTTTTGTAAGCTCAAACGTCATATCTTGTAAATCTTGCATCTTCTGGATGCTGTAATTAATACCACTTATCTTATCAAAAAAAAAAAACCAAGAAGATGTTCCCTGCAATGGCAATGTTATTCCAGAATTTGAGATCCAAGTCTTAAGTGTTGAGTTAGATCGTACCTTTGTTTGTATCTCTGTGTTCATGTTAAAAAATGTAACAGCTGATACTTGTATTTGATGCTATTTTATACAACCTTTTTAGGAAGATTGTACATAGCAGATACAAATAACAGTGTGATAAGATACTTAGATCTGAACAAGTCAGAAGCTGAAGTTCTTACTTTGGAGTTGAAAGGAGTGCAGCCTCCACTTAAATCCAGATCTTTGAAGCGCCTTAGACGTCGATCTGGAGCTGACACACAGACTATTGTAGTTAATGGTGGTTCATCCAGTGAGGGTACATTGAACTTAAGAATCTCGGTACCTGAAGGATACCATTTCTCCAAGGTTTTCTTTCTCTCTTCTGAACAAATTGATTAAGAAAATAGGAACAGCATTTCCTTCCCTTTGAATTTACCACCTCAGTATGTCCCTGTTTATTTTGCCTCATAGGCTTTTCTGCCTTATACCAAATGCAGGAAGCGAAGAGTAAATTTAGCATAGATTTTGAG</genome_strand>
        <mrna_strand>GATATACACCAGAGATTCATTAATACTTTTTGCAATGTCTCATTGACAAGTTAAACCAGGAAACTGGAGATTTTTTTTGTAAGCTCAAACGTCATATCTTGTAAATCTTGCATCTTCTGGATGCTGTAATTAATACCACTTATCTTATCAAAAAAAAAAAACCAAGAAGATGTTCCCTGCAATGGCAATGTTATTCCAGAATTTGAGATCCAAGTCTTAAGTGTTGAGTTAGATCGTACCTTTGTTTGTATCTCTGTGTTCATGTTAAAAAATGTAACAGCTGATACTTGTATTTGATGCTATTTTATACAACCTTTTTAGGAAGATTGTACATAGCAGATACAAATAACAGTGTGATAAGATACTTAGATCTGAACAAGTCAGAAGCTGAAGTTCTTACTTTGGAGTTGAAAGGAGTGCAGCCTCCACTTAAATCCAGATCTTTGAAGCGCCTTAGACGTCGATCTGGAGCTGACACACAGACTATTGTAGTTAATGGTGGTTCATCCAGTGAGGGTACATTGAACTTAAGAATCTCGGTACCTGAAGGATACCATTTCTCCAAG...................................................................................................................................GAAGCGAAGAGTAAATTTAGCATAGATTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290029" ref_strand="+" ref_description="SGN-E290029 [cLET-5-K1]">
      <seq>gatatacaccagagattcattaatactttttgcaatgtctcattgacaagttaaaccaggaaactggagattttttttgtaagctcaaacgtcatatcttgtaaatcttgcatcttctggatgctgtaattaataccacttatcttatcaaaaaaaaaaaaccaagaagatgttccctgcaatggcaatgttattccagaatttgagatccaagtcttaagtgttgagttagatcgtacctttgtttgtatctctgtgttcatgttaaaaaatgtaacagctgatacttgtatttgatgctattttatacaacctttttaggaagattgtacatagcagatacaaataacagtgtgataagatacttagatctgaacaagtcagaagctgaagttcttactttggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="110248" stop="111255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110548" g_stop="110955" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E290029" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110548" e_stop="110955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATACACCAGAGATTCATTAATACTTTTTGCAATGTCTCATTGACAAGTTAAACCAGGAAACTGGAGATTTTTTTTGTAAGCTCAAACGTCATATCTTGTAAATCTTGCATCTTCTGGATGCTGTAATTAATACCACTTATCTTATCAAAAAAAAAAAACCAAGAAGATGTTCCCTGCAATGGCAATGTTATTCCAGAATTTGAGATCCAAGTCTTAAGTGTTGAGTTAGATCGTACCTTTGTTTGTATCTCTGTGTTCATGTTAAAAAATGTAACAGCTGATACTTGTATTTGATGCTATTTTATACAACCTTTTTAGGAAGATTGTACATAGCAGATACAAATAACAGTGTGATAAGATACTTAGATCTGAACAAGTCAGAAGCTGAAGTTCTTACTTTGGAGT</genome_strand>
        <mrna_strand>GATATACACCAGAGATTCATTAATACTTTTTGCAATGTCTCATTGACAAGTTAAACCAGGAAACTGGAGATTTTTTTTGTAAGCTCAAACGTCATATCTTGTAAATCTTGCATCTTCTGGATGCTGTAATTAATACCACTTATCTTATCAAAAAAAAAAAACCAAGAAGATGTTCCCTGCAATGGCAATGTTATTCCAGAATTTGAGATCCAAGTCTTAAGTGTTGAGTTAGATCGTACCTTTGTTTGTATCTCTGTGTTCATGTTAAAAAATGTAACAGCTGATACTTGTATTTGATGCTATTTTATACAACCTTTTTAGGAAGATTGTACATAGCAGATACAAATAACAGTGTGATAAGATACTTAGATCTGAACAAGTCAGAAGCTGAAGTTCTTACTTTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541498" ref_strand="+" ref_description="SGN-E541498 [TUS-62-F5](-)">
      <seq>taacagctgatactgtattttgatgctattttatacaaccttttaggaagattgtacatagcagatacaaataacagtgtgataagatacttagatctgaacaagtcagaagctgaagttcttactttggagttgaaaggagtgcagcctccacttaaatccagatcttngaagcgccttagacgtcgatctggagctgacacacagactattgtagttaatggtggttcatccagtgagggtacattgaacttaagaatctcggtacctgaaggataccatttctccaaggaagcgaagagtaaatttagcatagattttgagccagataatgctgctgaggttgattccttggagggaaatctcagcccagaaggttcagcagttgtgcacttcagaagatcttctgcttcaccaaccaccggcagagtttattgcaaggtatactattgcaaagaagatgaggtttgcttgtaccagccattgacctttgaagtaccatttcaagaggtaaatccagattttgcccctgccatgatcacacttgcttttgatgtgaagccaaaaacatccccaactagcttacagattccggctaggtaatggattcatcgtgagaatacgtattacttaatcatgattacttgataataaatgaatgtatatagaatgacacatcacgtttgtgcttcacattcaattcaagatattaaaaagaaattgatacactgtttagtacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="110522" stop="112736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110822" g_stop="111113" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111114" i_stop="111244" i_length="131">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111245" g_stop="111394" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="441" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111395" i_stop="112129" i_length="735">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112130" g_stop="112439" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="751" r_length="310" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E541498" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110822" e_stop="111113"/>
          <exon e_start="111245" e_stop="111394"/>
          <exon e_start="112130" e_stop="112439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAGCTGATACTTGTATTTGATGCTATTTTATACAACCTTTTTAGGAAGATTGTACATAGCAGATACAAATAACAGTGTGATAAGATACTTAGATCTGAACAAGTCAGAAGCTGAAGTTCTTACTTTGGAGTTGAAAGGAGTGCAGCCTCCACTTAAATCCAGATCTTTGAAGCGCCTTAGACGTCGATCTGGAGCTGACACACAGACTATTGTAGTTAATGGTGGTTCATCCAGTGAGGGTACATTGAACTTAAGAATCTCGGTACCTGAAGGATACCATTTCTCCAAGGTTTTCTTTCTCTCTTCTGAACAAATTGATTAAGAAAATAGGAACAGCATTTCCTTCCCTTTGAATTTACCACCTCAGTATGTCCCTGTTTATTTTGCCTCATAGGCTTTTCTGCCTTATACCAAATGCAGGAAGCGAAGAGTAAATTTAGCATAGATTTTGAGCCAGATAATGCTGCTGAGGTTGATTCCTTGGAGGGAAATCTCAGCCCAGAAGGTTCAGCAGTTGTGCACTTCAGAAGATCTTCTGCTTCACCAACCACCGGCAGAGTTTATTGCAAGGTATGATTATCTGTTTGAATATATCTTTTAAGTTTTACTGTAGTTTAGTGAAGTTTGTGGCCTGCATTTACCTCCTTAGCCATGCGTATCTATATTCAGCCATTTATTAAAGAAGACTATGCCAGGCAATATTTTGAGCAAAATAAAGCATCAGTGCTTTGGAAATGATTTTGACTTGATATATATATGCTTTCAAGTAGCCATTTGTTAGTAGCATCTCATGTAACGTTTGTACCTTGCTTCATGAAATTGACAATATGCTCTCCTTATAAGCATATAATGCCATGGCTCATGTGCTATGTGATATCTTCAGTCTACCAAAGCAATATGTGCTAATGCCAGAATTGATAATATAGATTTGTTCCCTAAGGACGTACTTACAAAAATTAACTTGAGAGGCACACAAACTTATTTGAAGGCCGTGTACCTGGGCGCAAATTCACCACGTTAGACCAGCAGTGTGTTAGTAGCATCTCATTTAGTGTTTGTACCTACCTTTAGCCCGATGCTATCACTTTCCTAGTCTGTAATGGTCCATCTTAGAGTTACATTTTCAATGAGTACTATAGCCACTTCCAATTTCAGATACTCATTTCAATGTGTTAGTAGCATCTCGTGTAGTGTTTGTATACCTACCTTTAGCCTGATGAGAATGCTTTCACTTTCCTAGTTTATAATGGTCCATCTTAGTGTTGTTACATTTTCAATGAGTACTATTGTCACTTCCAATTTCAGGTATACTATTGCAAAGAAGATGAGGTTTGCTTGTACCAGCCATTGACCTTTGAAGTACCATTTCAAGAGGTAAATCCAGATTTTGCCCCTGCCATGATCACACTTGCTTTTGATGTGAAGCCAAAAACATCCCCAACTAGCTTACAGATTCCGGCTAGGTAATGGATTCATCGTGAGAATACGTATTACTTAATCATGATTACTTGATAATAAATGAATGTATATAGAATGACACATCACGTTTGTGCTTCACATTCAATTCAAGATATTAAAAAGAAATTGATACACTGTTTAGTACTTTAATAGATGT</genome_strand>
        <mrna_strand>TAACAGCTGATACTGTATTTTGATGCTATTTTATACAACC-TTTTAGGAAGATTGTACATAGCAGATACAAATAACAGTGTGATAAGATACTTAGATCTGAACAAGTCAGAAGCTGAAGTTCTTACTTTGGAGTTGAAAGGAGTGCAGCCTCCACTTAAATCCAGATCTTNGAAGCGCCTTAGACGTCGATCTGGAGCTGACACACAGACTATTGTAGTTAATGGTGGTTCATCCAGTGAGGGTACATTGAACTTAAGAATCTCGGTACCTGAAGGATACCATTTCTCCAAG...................................................................................................................................GAAGCGAAGAGTAAATTTAGCATAGATTTTGAGCCAGATAATGCTGCTGAGGTTGATTCCTTGGAGGGAAATCTCAGCCCAGAAGGTTCAGCAGTTGTGCACTTCAGAAGATCTTCTGCTTCACCAACCACCGGCAGAGTTTATTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTATTGCAAAGAAGATGAGGTTTGCTTGTACCAGCCATTGACCTTTGAAGTACCATTTCAAGAGGTAAATCCAGATTTTGCCCCTGCCATGATCACACTTGCTTTTGATGTGAAGCCAAAAACATCCCCAACTAGCTTACAGATTCCGGCTAGGTAATGGATTCATCGTGAGAATACGTATTACTTAATCATGATTACTTGATAATAAATGAATGTATATAGAATGACACATCACGTTTGTGCTTCACATTCAATTCAAGATATTAAAAAGAAATTGATACACTGTTTAGTACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205504" ref_strand="+" ref_description="SGN-E205504 [cLEC-28-H9]">
      <seq>tcgcctcttccccctctcatttccttcaaactcttctcccccatctctctctctctctctacataatccttctctcctccgccacctaccgccgccgtctccgccgtcaaactcaaaactcagtttgcatctatttacagaagagaagcaaacgtacaattcgcgagaatcattccgaattttgcatcacaaaattgatccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgatggggaaattgagcaacaaacgagccttgatcaatccaggaggagaacggataccgagcaacagatctactcttcaaagcttctccaggctctccggcacgttcgccggagtaatgacaatccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116613" stop="117933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116913" g_stop="117035" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="117633" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="424" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E205504" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116913" e_stop="117035"/>
          <exon e_start="117333" e_stop="117633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCTCTTCCCCCTCTCATTTCCTTCAAACTCTTCTCCCCCATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATC</genome_strand>
        <mrna_strand>TCGCCTCTTCCCCCTCTCATTTCCTTCAAACTCTTCTCCCCCATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCACAAAATTGATCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGAGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGGCACGTTCGCCGGAGTAATGACAATCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E575387" ref_strand="+" ref_description="SGN-E575387 [35003]">
      <seq>ctcccccatctctctctctctccctctctctacataatccttctctcctccgccagctaccgccaccgtctccgccgccaaactcactactcagtttgcatctatttacagaagagaagcaaacgtaccattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcagaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgctggggaaattgagcaacaaacaagccttgatcaatccaggtggagaactgataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgtccgccggagtaatgacaatccgtctccggttaatgccggacgcgccgtcagggagaccngcgatagagtccttgccgtcacagctaagggaaggagtcgttggagtagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagctaagctgaacagcggcaatataaaatcgaaaaaaccagcggcgaagaagcgattgccggctttgcagccggaaagttcgtgttctcggccgtttagttcccggttgtcagaaaccctcgtttacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116643" stop="118205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116941" g_stop="117035" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="117905" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="668" r_length="574" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E575387" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116941" e_stop="117035"/>
          <exon e_start="117333" e_stop="117905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTCTCCCCCATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCA-ACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGA</genome_strand>
        <mrna_strand>CTCCCCCATCTCTC-TCTCTCTCCCTCTCTCTACATAATCCTTCTCTCCTCCGCCAGCTACCGCCACCGTCTCCGCCGCCAAACTCACTACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACCATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAGACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGCTGGGGAAATTGAGCAACAAACAAGCCTTGATCAATCCAGGTGGAGAACTGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTCCGCCGGAGTAATGACAATCCGTCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCNGCGATAGAGTCCTTGCCGTCACAGCTAAGGGAAGGAGTCGTTGGAGTAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCTAAGCTGAACAGCGGCAATATAAAATCGAAAAAACCAGCGGCGAAGAAGCGATTGCCGGCTTTGCAGCCGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACCCTCGTTTACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571085" ref_strand="+" ref_description="SGN-E571085 [15771]">
      <seq>cccatctctctctctctccctctctctacataatccttctctcctccgccacctaccgccgccaaactcacaactcagtttgcatctatttacagaagagaagcaaacgtaccattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgctggggaaattgagcaacaaacaagccttgatcaatccaggtggagaactgataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgtccgccggagtaatgacaatcagtctccggttaatgccggacgcgccgtcagggagaccgccgatagagtccttgccgtcacagctaagggaaggagtcgttggagtagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagctaagctgaacagcggcaatataaaatcgaaaaaaccagcggtgacgaagcgattgccggctttgcagcggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacctatcagctctacagatgcaatcaaagccatgacttttctgaccgggtctgctctccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116649" stop="118278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116945" g_stop="117022" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.782"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117023" i_stop="117332" i_length="310">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="117989" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="735" r_length="657" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E571085" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116945" e_stop="117022"/>
          <exon e_start="117333" e_stop="117989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCCCCATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCC-GTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACC-GGCCTCCTCTCCG</genome_strand>
        <mrna_strand>CCCATCTCTC-TCTCTCTCCCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCAAACTCACAACTCAG......................................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACCATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGCTGGGGAAATTGAGCAACAAACAAGCCTTGATCAATCCAGGTGGAGAACTGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTCCGCCGGAGTAATGACAATCAGTCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGATAGAGTCCTTGCCGTCACAGCTAAGGGAAGGAGTCGTTGGAGTAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCTAAGCTGAACAGCGGCAATATAAAATCGAAAAAACCAGCGGTGACGAAGCGATTGCCGGCTTTGCAGCGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACCTATCAGCTCTACAGATGC-AATCAAAGCCATGACTTTTCTGACCGGGTCTGCTCTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409396" ref_strand="+" ref_description="SGN-E409396 [PPI-13-P18]">
      <seq>ccatctctctctctctccctctctctacataatccttctctcctccgccacctaccgccgccaaactcacaactcagtttgcatctatttacagaagagaagcaaacgtaccattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcagaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgctggggaaattgagcaacaaacaagccttgatcaatccaggtggagaactgataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgtccgccggagtaatgacaatcagtctccggttaatgccggacgcgccgtcagggagaccgccgatagagtccttgccgtcacagctaagggaaggagtcgttggaatagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagctaagctgaacagcggcaatataaaatcgaaaaaaccagcggtgacgaagcgattgccggctttgcagcggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagagaaactaacgactacatatcagctctacagatgcnaatcaaagccatgactttttctgaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116649" stop="118277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116947" g_stop="117022" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.776"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117023" i_stop="117332" i_length="310">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="117977" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="722" r_length="645" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E409396" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116947" e_stop="117022"/>
          <exon e_start="117333" e_stop="117977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCCCATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCC-GTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGAC-TTTTCTGACCG</genome_strand>
        <mrna_strand>CCATCTCTCTCTCTCTCCCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCAAACTCACAACTCAG......................................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACCATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAGACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGCTGGGGAAATTGAGCAACAAACAAGCCTTGATCAATCCAGGTGGAGAACTGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTCCGCCGGAGTAATGACAATCAGTCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGATAGAGTCCTTGCCGTCACAGCTAAGGGAAGGAGTCGTTGGAATAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCTAAGCTGAACAGCGGCAATATAAAATCGAAAAAACCAGCGGTGACGAAGCGATTGCCGGCTTTGCAGCGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAG-AGAAACTAACGACTACATATCAGCTCTACAGATGCNAATCAAAGCCATGACTTTTTCTGACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409730" ref_strand="+" ref_description="SGN-E409730 [PPI-14-N4]">
      <seq>catctctctctctctccctctctctacataatccttctctcctccgccacctaccgccgccaaactcacaactcagtttgcatctatttacagaagagaagcaaacgtaccattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgctggggaaattgagcaacaaacaagccttgatcaatccaggtggagaactgataccgagcaacagatctactcttcnaagcttctccaggctctccgtcacgtccgccggagtaatgacaatcagtctccggttaatgccggacgcgccgtcagggagaccgccgatagagtccttgccgtcacagctaagggaaggagtcgttggagtaaagcgattctcactggccgtctcagcctcaggcttagcccaatcaataaaaagcataagaaagctaagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116649" stop="118088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116948" g_stop="117022" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.787"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117023" i_stop="117332" i_length="310">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="117788" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="532" r_length="456" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E409730" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116948" e_stop="117022"/>
          <exon e_start="117333" e_stop="117788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCCCATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCC-GTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGA</genome_strand>
        <mrna_strand>CATCTCTCTCTCTCTCCCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCAAACTCACAACTCAG......................................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACCATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGCTGGGGAAATTGAGCAACAAACAAGCCTTGATCAATCCAGGTGGAGAACTGATACCGAGCAACAGATCTACTCTTCNAAGCTTCTCCAGGCTCTCCGTCACGTCCGCCGGAGTAATGACAATCAGTCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGATAGAGTCCTTGCCGTCACAGCTAAGGGAAGGAGTCGTTGGAGTAAAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCCAATCAATAAAAAGCATAAGAAAGCTAAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555680" ref_strand="+" ref_description="SGN-E555680 [cTSD-1-B11]">
      <seq>cccccatctctctctctctctctacataatccttctctcctccgccacctaccgccgccgtctccgccgtcaaactcaaaactcagtttgcatctatttacagaagagaagcaaacgtacaattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgatggggaaattgagcaacaaacgagccttgatcaatccaggtggagaacggataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgttcgccggagtaatgacaatccatctccggttaatgccggacgcgccgtcagggagaccgccgacagagtcctcgccgttacagcgaagggaagaagtcgttggagcagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagcaaaactgaatagcggcaatataaaatcaaagaaaccagcggcgaagaagcgattgcctgctttgcaacggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcaaagccatgacttttctgaccggcctcctctccgccggtggagcaggatcagttgccgctcaccccgatcggctcggctaagtggcttggtacaacatgtcctcttttttctttttttttctaattctttttaatttctaaaacccttttttatttttgttaataattgagagttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116650" stop="118434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116950" g_stop="117035" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="118134" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="887" r_length="801" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E555680" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116950" e_stop="117035"/>
          <exon e_start="117333" e_stop="118134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTC-TTTTTTTTCTAATTCTTTTTTAATTTCTAAAACCCTTTTTTTATTTTTGTTAATAATTGAGAGTTTTT</genome_strand>
        <mrna_strand>CCCCCATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGGTACAACATGTCCTCTTTTTTCTTTTTTTTTCTAATTC-TTTTTAATTTCTAAAACCC-TTTTTTATTTTTGTTAATAATTGAGAGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556028" ref_strand="+" ref_description="SGN-E556028 [cTSD-2-C8]">
      <seq>cccccatctctctctctctctctacataatccttctctcctccgccacctaccgccgccgtctccgccgtcaaactcaaaactcagtttgcatctatttacagaagagaagcaaacgtacaattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgatggggaaattgagcaacaaacgagccttgatcaatccaggtggagaacggataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgttcgccggagtaatgacaatccatctccggttaatgccggacgcgccgtcagggagaccgccgacagagtcctcgccgttacagcgaagggaagaagtcgttggagcagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagcaaaactgaatagcggcaatataaaatcaaagaaaccagcggcgaagaagcgattgcctgctttgcaacggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcaaagccatgacttttctgaccggcctcctctccgccggtggagcaggatcagttgccgctcaccccgatcggctcggctaagtggcttgttacaacatgtcctctttttttcttttttttctaattcttttttaatttctaaaaccccttttttatttttgttaataattgagagtttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116650" stop="118437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116950" g_stop="117035" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="118134" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="889" r_length="803" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="890" polyA_stop="907"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E556028" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116950" e_stop="117035"/>
          <exon e_start="117333" e_stop="118134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTC-TTTTTTCTTTTTTTTCTAATTCTTTTTTAATTTCTAAAACCCTTTTTTTATTTTTGTTAATAATTGAGAGTTTTT</genome_strand>
        <mrna_strand>CCCCCATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTTCTTTTTTTTCTAATTCTTTTTTAATTTCTAAAACCCCTTTTTTATTTTTGTTAATAATTGAGAGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556857" ref_strand="+" ref_description="SGN-E556857 [cTSD-4-N10]">
      <seq>cccccatctctctctctctctctacataatccttctctcctccgccacctaccgccgccgtctccgccgtcaaactcaaaactcagtttgcatctatttacagaagagaagcaaacgtacaattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgatggggaaattgagcaacaaacgagccttgatcaatccaggtggagaacggataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgttcgccggagtaatgacaatccatctccggttaatgccggacgcgccgtcagggagaccgccgacagagtcctcgccgttacagcgaagggaagaagtcgttggagcagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagcaaaactgaatagcggcaatataaaatcaaagaaaccagcggcgaagaagcgattgcctgctttgcaacggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcanagccatgacttttctgaccggcctcctctccgccggtggagcaggatcagttgccgctcaccccgatcggctcggctaagtggcttgttacaacatgtcctcttttttcttttttttccaattcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116650" stop="118386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116950" g_stop="117035" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="118086" g_length="754"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="840" r_length="754" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E556857" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116950" e_stop="117035"/>
          <exon e_start="117333" e_stop="118086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTCTTTTTTTTCTAATTCTTTTT</genome_strand>
        <mrna_strand>CCCCCATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCANAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTCTTTTTTTTCCAATTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481770" ref_strand="+" ref_description="SGN-E481770 [cSTD-19-O6]">
      <seq>ctctctctctccctctctctacataatccttctctcctccgccacctaccgccgccaaactcacaactcagtttgcatctatttacagaagagaagcaaacgtaccattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcagaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgctggggaaattgagcaacaaacaagccttgatcaatccaggtggagaactgataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgtccgccggagtaatgacaatcagtctccggttaatgccggacgcgccgtcagggagaccgccgatagagtccttgccgtcacagctaagggaaggagtcgttggagtagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagctaagctgaacagcggncatataaaatcgaaaaaaccagcggtgacgaagcgattgccggctttgcagcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116656" stop="118150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116953" g_stop="117022" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.814"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117023" i_stop="117332" i_length="310">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="117850" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="589" r_length="518" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E481770" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116953" e_stop="117022"/>
          <exon e_start="117333" e_stop="117850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCC-GTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGG</genome_strand>
        <mrna_strand>CTCTCTCTCTCCCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCAAACTCACAACTCAG......................................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACCATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAGACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGCTGGGGAAATTGAGCAACAAACAAGCCTTGATCAATCCAGGTGGAGAACTGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTCCGCCGGAGTAATGACAATCAGTCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGATAGAGTCCTTGCCGTCACAGCTAAGGGAAGGAGTCGTTGGAGTAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCTAAGCTGAACAGCGGNCATATAAAATCGAAAAAACCAGCGGTGACGAAGCGATTGCCGGCTTTGCAGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453431" ref_strand="+" ref_description="SGN-E453431 [cSTS-19-P18]">
      <seq>tctctctctccctctctctacataatccttctctcctccgccacctaccgccgccaaactcacaactcagtttgcatctatttacagaagagaagcaaacgtaccattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgctggggaaattgagcaacaaacaagccttgatcaatccaggtggagaactgataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgtccgccggagtaatgacaatcagtctccggttaatgccggacgcgccgtcagggagaccgccgatagagtccttgccgtcacagctaagggaaggagtcgttggagtagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagctaagctgaacagcgggcatataaaatcgaaaaaaccagcggtgacgaagcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116656" stop="118134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116954" g_stop="117022" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.812"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117023" i_stop="117332" i_length="310">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="117834" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="572" r_length="502" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E453431" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116954" e_stop="117022"/>
          <exon e_start="117333" e_stop="117834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCC-GTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATT</genome_strand>
        <mrna_strand>TCTCTCTCTCCCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCAAACTCACAACTCAG......................................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACCATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGCTGGGGAAATTGAGCAACAAACAAGCCTTGATCAATCCAGGTGGAGAACTGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTCCGCCGGAGTAATGACAATCAGTCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGATAGAGTCCTTGCCGTCACAGCTAAGGGAAGGAGTCGTTGGAGTAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCTAAGCTGAACAGCGGGCATATAAAATCGAAAAAACCAGCGGTGACGAAGCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729097" ref_strand="+" ref_description="SGN-E729097 [LA19DH10]">
      <seq>tctctgctnctctctctacataatccttctctcctccgccacctaccgccgccgtctccgccgtcaaactcaaaactcagtttgcatctatttacagaagagaagcaaacgtacaattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgatggggaaattgagcaacaaacgagccttgatcaatccaggtggagaacggataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgttcgccggagtaatgacaatccatctccggttaatgccggacgcgccgtcagggagaccgccgacagagtcctcgccgttacagcgaagggaagaagtcgttggagcagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagcaaaactgaatagcggcaatataaaatcaaagaaaccagcggcgaataagcgattgcctgctttgcaacggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116658" stop="118154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116956" g_stop="117035" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="117854" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="602" r_length="522" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E729097" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116956" e_stop="117035"/>
          <exon e_start="117333" e_stop="117854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAG</genome_strand>
        <mrna_strand>TCTCTGCTNCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAATAAGCGATTGCCTGCTTTGCAACGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729794" ref_strand="+" ref_description="SGN-E729794 [LA22AE06]">
      <seq>ctctctctctctctacataatccttctctcctccgccacctaccgccgccgtctccgccgtcaaactcaaaactcagtttgcatctatttacagaagagaagcaaacgtacaattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgatggggaaattgagcaacaaacgagccttgatcaatccaggtggagaacggataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgttcgccggagtaatgacaatccatctccggttaatgccggacgcgccgtcagggagaccgccgacagagtcctcgccgttacagcgaagggaagaagtcgttggagcagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagcaaaactgaatagcggcaatataaaatcaaagaaaccagcggcgaagaagcgattgcctgctttgcaacggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcaaagccatgacttttctgaccggcctcctctccgccggtggagcaggatcagttgccgctcaccccgatcggctcggctaagtggcttgttacaacatgtcctcttttttctttttttttctaattctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116659" stop="118385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116959" g_stop="117035" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="118085" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="831" r_length="754" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E729794" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116959" e_stop="117035"/>
          <exon e_start="117333" e_stop="118085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTC-TTTTTTTTCTAATTCTTTT</genome_strand>
        <mrna_strand>CTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTCTTTTTTTTTCTAATTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335791" ref_strand="+" ref_description="SGN-E335791 [cTOE-6-G23]">
      <seq>tctctctctctctacataatccttctctcctccgccacctaccgccgccgtctccgccgtcaaactcaaaactcagtttgcatctatttacagaagagaagcaaacgtacaattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgatggggaaattgagcaacaaacgagccttgatcaatccaggtggagaacggataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgttcgccggagtaatgacaatccatctccgggtaatgccgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116660" stop="117949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116960" g_stop="117035" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="117649" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="393" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E335791" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116960" e_stop="117035"/>
          <exon e_start="117333" e_stop="117649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGA</genome_strand>
        <mrna_strand>TCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGGTAATGCCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323165" ref_strand="+" ref_description="SGN-E323165 [cTOB-28-L18]">
      <seq>tctctctctctacataatccttctctcctccgccacctaccgccgccgtctccgccgtcaaactcaaaactcagtttgcatctatttacagaagagaagcaaacgtacaattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgatggggaaattgagcaacaaacgagccttgatcaatccaggtggagaacggataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgttcgccggagtaatgacaatccatctccggttaatgccggacgcgccgtcagggagaccgccgacagagtcctcgccgttacagcgaagggaagaagtcgttggagcagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagcaaaactgaatagcggcaatataaaatcaaagaaaccagcggcgaagaagcgattgcctgctttgcaacggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcaaagccatgacttttctgaccggcctcctctccgccggtggagcangatcagttgccgctcaccccgatcggctcggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116662" stop="118335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116962" g_stop="117035" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="118035" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="777" r_length="703" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E323165" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116962" e_stop="117035"/>
          <exon e_start="117333" e_stop="118035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTA</genome_strand>
        <mrna_strand>TCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCANGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323164" ref_strand="+" ref_description="SGN-E323164 [cTOB-28-L16]">
      <seq>tctctctctctacataatccttctctcctccgccacctaccgccgccgtctccgccgtcaaactcaaaactcagtttgcatctatttacagaagagaagcaaacgtacaattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgatggggaaattgagcaacaaacgagccttgatcaatccaggtggagaacggataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgttcgccggagtaatgacaatccatctccggttaatgccggacgcgccgtcagggagaccgccgacagagtcctcgccgttacagcgaagggaagaagtcgttggagcagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagcaaaactgaatagcggcaatataaaatcaaagaaaccagcggcgaagaagcgattgcctgctttgcaacggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcaaagccatgacttttctgaccggcctcctctccgccggtggagcaggatcagttgccgctcaccccgatcggctcggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116662" stop="118335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116962" g_stop="117035" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="118035" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="777" r_length="703" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E323164" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116962" e_stop="117035"/>
          <exon e_start="117333" e_stop="118035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTA</genome_strand>
        <mrna_strand>TCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320463" ref_strand="+" ref_description="SGN-E320463 [cTOB-22-F12]">
      <seq>tctctctctctacataatccttctctcctccgccacctaccgccgccgtctccgccgtcaaactcaaaactcggtttgcatctatttacagaagagaagcaaacgtacaattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccgagcgcaaaaagagaagaaaaattggagatgatggggaaattgagcaacaaacgagccttgatcaatccaggtggagaacggataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgttcgccggaggaatgacaatccatctccggtgaatgccggacgcgccggcagggagaccgccgacagagtcctcgccgttacagcgaagggaagaagtcgttggagcagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagcaagactgaatagcggcaatataaaatcaaagaaaccagcggcgaagaagcgattgcctgctttgcaacggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcaaagccatgactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116662" stop="118270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116962" g_stop="117035" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="117970" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="712" r_length="638" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E320463" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116962" e_stop="117035"/>
          <exon e_start="117333" e_stop="117970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTT</genome_strand>
        <mrna_strand>TCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCGG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCGAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGGAATGACAATCCATCTCCGGTGAATGCCGGACGCGCCGGCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAGACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323049" ref_strand="+" ref_description="SGN-E323049 [cTOB-28-K19]">
      <seq>tctctctctctacataatccttctctcctccgccacctaccgccgccgtctccgccgtcaaactcaaaactcagtttgcatctatttacagaagagaagcaaacgtacaattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgatggggaaattgagcaacaaacgagccttgatcaatccaggtggagaacggataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgttcgccggagtaatgacaatccatctccggttaatgccggacgcgccgtcagggagaccgccgacagagtcctcgccgttacagcgaagggaagaagtcgttggagcagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagcaaaactgaatagcggcaatatagaatcaaagacaccagcggcgaagaagcgattgcctgctttgcaacggaaagttcgtgttctcggacgtttagttcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116662" stop="118181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116962" g_stop="117035" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="117881" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="623" r_length="549" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E323049" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116962" e_stop="117035"/>
          <exon e_start="117333" e_stop="117881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCG</genome_strand>
        <mrna_strand>TCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAGAATCAAAGACACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGACGTTTAGTTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323241" ref_strand="+" ref_description="SGN-E323241 [cTOB-28-K16]">
      <seq>tctctctctctacataatccttctctcctccgccacctaccgccgccgtctccgccgtcaaactcaaaactcagtttgcatctatttacagaagagaagcaaacgtacaattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgatggggaaattgagcaacaaacgagccttgatcaatccaggtggagaacggataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgttcgccggagtaatgacaatccatctccggttaatgccggacgcgccgtcagggagaccgccgacagagtcctcgccgttacagcgaagggaagaagtcgttggagcagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagcaaaactgaatagcggcaatataaaatcaaagaaaccagcggcgaagaagcgattgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116662" stop="118138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116962" g_stop="117035" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="117838" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="580" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E323241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116962" e_stop="117035"/>
          <exon e_start="117333" e_stop="117838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCT</genome_strand>
        <mrna_strand>TCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730436" ref_strand="+" ref_description="SGN-E730436 [LA24AE07]">
      <seq>tctctctacataatccttctctcctccgccacctaccgccgccgtctccgccgtcaaactcaaaactcagtttgcatctatttacagaagagaagcaaacgtacaattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgatggggaaattgagcaacaaacgagccttgatcaatccaggtggagaacggataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgttcgccggagtaatgacaatccatctccggttaatgccggacgcgccgtcagggagaccgccgacagagtcctcgccgttacagcgaagggaagaagtcgttggagcagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagcaaaactgaatagcggcaatataaaatcaaagaaaccagcggcgaagaagcgattgcctgctttgcaacggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcaaagccatgacttttctgaccggtctcctctccgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116666" stop="118292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116966" g_stop="117035" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="117992" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="730" r_length="660" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E730436" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116966" e_stop="117035"/>
          <exon e_start="117333" e_stop="117992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCG</genome_strand>
        <mrna_strand>TCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGTCTCCTCTCCGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729461" ref_strand="+" ref_description="SGN-E729461 [LA21AE11]">
      <seq>tccttctctcctccgccacctaccgccgccgtctccgccgtcaaactcaaaactcagtttgcatctatttacagaagagaagcaaacgtacaattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgatggggaaattgagcaacaaacgagccttgatcaatccaggtggagaacggataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgttcgccggagtaatgacaatccatctccggttaatgccggacgcgccgtcagggagaccgccgacagagtcctcgccgttacagcgaagggaagaagtcgttggagcagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagcaaaactgaatagcggcaatataaaatcaaagaaaccagcggcgaagaagcgattgcctgctttgcaacggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcaaagccatgacttttctgaccggcctcctctccgccggtggagcaggatcagttgccgctcaccccgatcggctcggctaagtggcttgttacaacatgtcctcttttttctttttttttctaattcttttttaatttctataacccctttttttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116679" stop="118413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116979" g_stop="117035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="118113" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="840" r_length="783" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E729461" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116979" e_stop="117035"/>
          <exon e_start="117333" e_stop="118113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTC-TTTTTTTTCTAATTCTTTTTTAATTTCTA-AAACCCTTTTTTTATTTT</genome_strand>
        <mrna_strand>TCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTCTTTTTTTTTCTAATTCTTTTTTAATTTCTATAACCCCTTTTTTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574571" ref_strand="+" ref_description="SGN-E574571 [34060]">
      <seq>cttctctcctccgccacctaccgctgccgtctccgccgacaaactcacaactcaggtttgcatctatttacagaagagaagcaaacgtaccattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaagaaattggagatgctggggaaattgagcaacaggacaagccttgatcaatccaggtggagaactgataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgtccgccggagtaatgacaatccgtctccggttaatgccggacgcgccgtcaggggagaccgccgatagagtccttgccgtcacagctaagggaaggagtcgttggagtagagcgattctcagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="116681" stop="118031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116981" g_stop="117035" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="117731" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="458" r_length="403" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E574571" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116981" e_stop="117035"/>
          <exon e_start="117333" e_stop="117731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAG-TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAA-AAATTGGAGATGATGGGGAAATTGAGCAACA-AACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCA-GGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTG</genome_strand>
        <mrna_strand>CTTCTCTCCTCCGCCACCTACCGCTGCCGTCTCCGCCGACAAACTCACAACTCAG.........................................................................................................................................................................................................................................................................................................GTTTGCATCTATTTACAGAAGAGAAGCAAACGTACCATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAGAAATTGGAGATGCTGGGGAAATTGAGCAACAGGACAAGCCTTGATCAATCCAGGTGGAGAACTGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTCCGCCGGAGTAATGACAATCCGTCTCCGGTTAATGCCGGACGCGCCGTCAGGGGAGACCGCCGATAGAGTCCTTGCCGTCACAGCTAAGGGAAGGAGTCGTTGGAGTAGAGCGATTCTCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571930" ref_strand="+" ref_description="SGN-E571930 [31005]">
      <seq>gccgtctccgccgccaaactcacaactcagtttgcatctatttacagaagagaagcaaacgtaccattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgctggggaaattgagcaacaaacaagccttgatcaatccaggtggagaactgataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgtccgccggagtaatgacaatccgtctccggttaatgccggacgcgccgtcagggagaccgccgatagagtccttgccgtcacagctaagggaaggagtcgttggagtagagcgattctcagtggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagctaagctgaacagcggcaatataaaatcgaaaaaaccagcggcgaagaagcgattgctggctttgcagcggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcaaagccatgacttttctgaccggtctgctctccgccggtggagcaggatcagttgccgctcaccccgatcggctcggctaagtggctcgttacaacatgtccttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="117027" stop="118364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117027" g_stop="117035" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="30" r_length="9" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="118053" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="751" r_length="721" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E571930" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117027" e_stop="117035"/>
          <exon e_start="117333" e_stop="118053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACAT</genome_strand>
        <mrna_strand>ACAACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACCATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGCTGGGGAAATTGAGCAACAAACAAGCCTTGATCAATCCAGGTGGAGAACTGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTCCGCCGGAGTAATGACAATCCGTCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGATAGAGTCCTTGCCGTCACAGCTAAGGGAAGGAGTCGTTGGAGTAGAGCGATTCTCAGTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCTAAGCTGAACAGCGGCAATATAAAATCGAAAAAACCAGCGGCGAAGAAGCGATTGCTGGCTTTGCAGCGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGTCTGCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTCGTTACAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406705" ref_strand="+" ref_description="SGN-E406705 [PPI-4-N23]">
      <seq>acctaccgccgccaaactcacaactcagtttgcatctatttacagaagagaagcaaacgtaccattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcagaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgctggggaaattgagcaacaaacaagccttgatcaatccaggtggagaactgataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgtccgccggagtaatgacaatcagtctccggttaatgccggacgcgccgtcagggagaccgccgatagagtccttgccgtcaaagctaagggaaggagtcgttggagtagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagctaagctgaacagcggcaatataaaatcgaaaaaaccagcggtgacgaagcgattgccggctttgcagcggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcaaagccatgacttttctgaccggtctgctctccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="117027" stop="118290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117027" g_stop="117035" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="28" r_length="9" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117333" g_stop="117990" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="686" r_length="658" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E406705" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117027" e_stop="117035"/>
          <exon e_start="117333" e_stop="117990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCAGGTATTGTTTCATGTGCTTTAGTTTCTGTTTCTTGTTTGTGAGCTGAGTTTCAATTTTTTGAATTTTTTTGTTTGTTTGAACGGTGATTCCTGAGAATCGAAATAGTAGAGTTTTGAATTCATTATGTGAAAGGAGGAGTATTCATGGTACAACTGCCTTATGTGTATACGTTTATGTACGGATACAAAAGTGTTCTTTCTGATTCACCTTATTTAGCATATTTACTCACAGAATAAAATTCAGAAAAGCTTAAACATGTTTTAAGAATCTCTTCTCTTTCTCTTTTTCTCTCTGCAGTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGC</genome_strand>
        <mrna_strand>ACAACTCAG.........................................................................................................................................................................................................................................................................................................TTTGCATCTATTTACAGAAGAGAAGCAAACGTACCATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAGACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGCTGGGGAAATTGAGCAACAAACAAGCCTTGATCAATCCAGGTGGAGAACTGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTCCGCCGGAGTAATGACAATCAGTCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGATAGAGTCCTTGCCGTCAAAGCTAAGGGAAGGAGTCGTTGGAGTAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCTAAGCTGAACAGCGGCAATATAAAATCGAAAAAACCAGCGGTGACGAAGCGATTGCCGGCTTTGCAGCGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGTCTGCTCTCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E621327" ref_strand="+" ref_description="SGN-E621327 [75072]">
      <seq>gtttgcatctatttacagaagagaagcaaacgtaccattcgcgagaatcattccgaattttgcatcagaaaattgttccttctgatggcgtcatctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgctggggaaattgagcaacaaacaagccttgatcaatccaggtggagaactgataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgtccgccggagtaatgacaatcagtctccggttaatgccggacgcgccgtcagggagaccgccgatagagtccttgccgtcacagctaagggaaggagtcgttggagtagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagctaagctgaacagcggcaatataaaatcgaaaaaaccagcggtgacgaagcgattgccggctttgcagcggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactaccatatccagtctacagatgcaaatcaaagccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="117032" stop="118264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117332" g_stop="117964" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E621327" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E621327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117332" e_stop="117964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTA-CATATCAGCTCTACAGATGCAAATCAAAGCCATG</genome_strand>
        <mrna_strand>GTTTGCATCTATTTACAGAAGAGAAGCAAACGTACCATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGCTGGGGAAATTGAGCAACAAACAAGCCTTGATCAATCCAGGTGGAGAACTGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTCCGCCGGAGTAATGACAATCAGTCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGATAGAGTCCTTGCCGTCACAGCTAAGGGAAGGAGTCGTTGGAGTAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCTAAGCTGAACAGCGGCAATATAAAATCGAAAAAACCAGCGGTGACGAAGCGATTGCCGGCTTTGCAGCGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACCATATCCAGTCTACAGATGCAAATCAAAGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573704" ref_strand="+" ref_description="SGN-E573704 [33056]">
      <seq>cagaagagaagcaaacgtaccattcgcgacaatcattcacgaattttgcatcagaaaattgttccttctgatggcgtcatctcagaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgctggggaaattgagcaacaaacaagccttgatcaatccaggtggagaactgataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgtccgccggagtaatgacaatccgtctccggttaatgccggacgcgccgtcagggagaccgccgatagagtccttgccgtcacagctaagggaaggagtcgttggagtagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagctaagctgaacagcggcaatataaaatcgaaaaaaccagcggcgaaaagcgattgccggctttgcagcggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcanagccatgacttttctgaccggtctgctctccngcggtggagcaggatcattcggcgatcggctcggctaatggtcgttacaacatgtctaattcttttttaatttctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="117047" stop="118378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117347" g_stop="118006" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E573704" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117347" e_stop="118006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTC-CGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCA</genome_strand>
        <mrna_strand>CAGAAGAGAAGCAAACGTACCATTCGCGACAATCATTCACGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAGACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGCTGGGGAAATTGAGCAACAAACAAGCCTTGATCAATCCAGGTGGAGAACTGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTCCGCCGGAGTAATGACAATCCGTCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGATAGAGTCCTTGCCGTCACAGCTAAGGGAAGGAGTCGTTGGAGTAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCTAAGCTGAACAGCGGCAATATAAAATCGAAAAAACCAGCGGCGAA-AAGCGATTGCCGGCTTTGCAGCGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCANAGCCATGACTTTTCTGACCGGTCTGCTCTCCNGCGGTGGAGCAGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E621011" ref_strand="+" ref_description="SGN-E621011 [71718]">
      <seq>catctcaaaccgtctcgaatcccgatgttaactccagtcactcgcgagaatccaagcgcaaaaagagaagaaaaattggagatgctggggaaattgagcaacaaacaagccttgatcaatccaggtggagaactgataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgtccgccggagtaatgacaatcagtctccggttaatgccggacgcgccgtcagggagaccgccgatagagtccttgccgtcacagctaagggaaggagtcgttggagtagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagctaagctgaacagccggcatataaaatcgaaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="117123" stop="118116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117423" g_stop="117816" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E621011" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E621011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117423" e_stop="117816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACC</genome_strand>
        <mrna_strand>CATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGCTGGGGAAATTGAGCAACAAACAAGCCTTGATCAATCCAGGTGGAGAACTGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTCCGCCGGAGTAATGACAATCAGTCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGATAGAGTCCTTGCCGTCACAGCTAAGGGAAGGAGTCGTTGGAGTAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCTAAGCTGAACAGCCGGCATATAAAATCGAAAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727524" ref_strand="+" ref_description="SGN-E727524 [LA14DG11]">
      <seq>cggtgaaattgagcaacaaacgagccttgatcaatccaggtggagaacggataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgttcgccggagtaatgacaatccatctccggttaatgccggacgcgccgtcagggagaccgccgacagagtcctcgccgttacagcgaagggaagaagtcgttggagcagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagcaaaactgaatagcggcaatataaaatcaaagaaaccagcggcgaagaagcgattgcctgctttgcaacggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcaaagccatgacttttctgaccggcctcctctccgccggtggagcaggatcagttgccgctcaccccgatcggctcggctaagtggcttgttacaacatgtcctcttttttctttttttttctaattcttttttaatttctaaaaccctttttttatttttgttaataattgagagtttttatattggtgtattttattgtatacattccttttcttccctgtttcgctctcatagtttccaccttgtccacccttttttattattattattattcctttaatttcttagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="117209" stop="118545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117508" g_stop="118244" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="739" polyA_stop="749"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E727524" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117508" e_stop="118244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTC-TTTTTTTTCTAATTCTTTTTTAATTTCTAAAACCCTTTTTTTATTTTTGTTAATAATTGAGAGTTTTTATATTGGTGTATTTTATTGTATACATTCCTTTTCTTCCCTGTTTCGCTCTCATAGTTTCCACCTTGTCCACCCTTTTTTATTATTATTATTATTCCTTTAATTTCTTAGT</genome_strand>
        <mrna_strand>CGGTGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTCTTTTTTTTTCTAATTCTTTTTTAATTTCTAAAACCCTTTTTTTATTTTTGTTAATAATTGAGAGTTTTTATATTGGTGTATTTTATTGTATACATTCCTTTTCTTCCCTGTTTCGCTCTCATAGTTTCCACCTTGTCCACCCTTTTTTATTATTATTATTATTCCTTTAATTTCTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E588986" ref_strand="+" ref_description="SGN-E588986 [42550]">
      <seq>tgctgataccgagcaacagatctactcttcaaagcttctccaggctctccgtcacgtccgccggagtaatgacaatccgtctccggttaatgccggacgcgccgtcagggagaccgccgatagagtccttgccgtcacagctaagggaaggagtcgttggagtagagcgattctcagtggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagctaagctgaacagcggcaatataaaatcgaaaaaaccagcggcgaagaagcgattgccggctttgcagcggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcaaagccatgacttttctgaccggtctgctctccgccggtggagcagtatcagttgccgctcaccccgatcggctcggctaagtggctcgttacaacatgtccttttcttttctaattcttttttaatttctaaacctttttttgttaataattgagagtttttatattggtgtattttattgtatacattccttttcttccctgtttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="117255" stop="118479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117553" g_stop="118179" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="612" polyA_stop="622"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E588986" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117553" e_stop="118179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTCTTTTTTTTCTAATTCTTTTTTAATTTCTAAAACCCTTTTTTTATTTTTGTTAATAATTGAGAGTTTTTATATTGGTGTATTTTATTGTATACATTCCTTTTCTTCCCTGTTTC</genome_strand>
        <mrna_strand>TGCTGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTCCGCCGGAGTAATGACAATCCGTCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGATAGAGTCCTTGCCGTCACAGCTAAGGGAAGGAGTCGTTGGAGTAGAGCGATTCTCAGTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCTAAGCTGAACAGCGGCAATATAAAATCGAAAAAACCAGCGGCGAAGAAGCGATTGCCGGCTTTGCAGCGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGTCTGCTCTCCGCCGGTGGAGCAGTATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTCGTTACAACATGT-C-C--TTTTC----TTTTCTAATTCTTTTTTAATTTCT-AAA-CC-----TT-TTTTTGTTAATAATTGAGAGTTTTTATATTGGTGTATTTTATTGTATACATTCCTTTTCTTCCCTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374467" ref_strand="+" ref_description="SGN-E374467 [TUS-38-N4](-)">
      <seq>tccgtcacgttcgccggagtaatgacaatccatctccggttaatgccggacgcgccgtcagggagaccgccgacagagtcctcgccgttacagcgaagggaagaagtcgttggagcagagcgattctcactggccgtctcagcctcaggcttagccaaatcaataaaaagcataagaaagcaaaactgaatagcggcaatataaaatcaaagaaaccagcggcgaagaagcgattgcctgctttgcaacggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcaaagccatgacttttctgaccggcctcctctccgccggtggagcaggatcagttgccgctcaccccgatcggctcggctaagtggcttgttacaacatgtcctcttttttctttttttttctaattcttttttaatttctaaaaccctttttttatttttgttaataattgagagtttttatattggtgtattttattgtatacattccttttcttccctgtttcgctctcatagtttccaccttgtccacccttttttattattattattattcctttaatttcttagtatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="117300" stop="118551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117600" g_stop="118250" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="653" polyA_stop="662"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E374467" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117600" e_stop="118250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTC-TTTTTTTTCTAATTCTTTTTTAATTTCTAAAACCCTTTTTTTATTTTTGTTAATAATTGAGAGTTTTTATATTGGTGTATTTTATTGTATACATTCCTTTTCTTCCCTGTTTCGCTCTCATAGTTTCCACCTTGTCCACCCTTTTTTATTATTATTATTATTCCTTTAATTTCTTAGTATTTAC</genome_strand>
        <mrna_strand>TCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTCTTTTTTTTTCTAATTCTTTTTTAATTTCTAAAACCCTTTTTTTATTTTTGTTAATAATTGAGAGTTTTTATATTGGTGTATTTTATTGTATACATTCCTTTTCTTCCCTGTTTCGCTCTCATAGTTTCCACCTTGTCCACCCTTTTTTATTATTATTATTATTCCTTTAATTTCTTAGTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284035" ref_strand="+" ref_description="SGN-E284035 [cLER-13-I21]">
      <seq>ttttttaaacagggaagaaaaggaatgtatacaataaaatacaccaatataaaaactctcaattattaacaaaaataaaaaaagggttttagaaattaaaaaagaattagaaaaaaaaagaaaaaagaggacatgttgtaacaagccacttagccgagccgatcggggtgagcggcaactgatcctgctccaccggcggagaggaggccggtcagaaaagtcatggctttgatttgcatctgtagagctgatatgtagtcgttagtttcttctagaaggttcgtaaacgggagtttctgacaaccgggaactaaacggccgagaacacgaactttccgttgcaaagcaggcaatcgcttcttcgccgctggtttctttgattttatattgccgctattcagttttgctttcttatgctttttattgatttggctaagcctgaggctgagacggccagtgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="-" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="118478" stop="117423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118184" g_stop="117723" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="-" ref_id="SGN-E284035" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118184" e_stop="117723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCGAAACAGGGAAGAAAAGGAATGTATACAATAAAATACACCAATATAAAAACTCTCAATTATTAACAAAAATAAAAAAAGGGTTTTAGAAATTAAAAAAGAATTAG-AAAAAAAAGAAAAAAGAGGACATGTTGTAACAAGCCACTTAGCCGAGCCGATCGGGGTGAGCGGCAACTGATCCTGCTCCACCGGCGGAGAGGAGGCCGGTCAGAAAAGTCATGGCTTTGATTTGCATCTGTAGAGCTGATATGTAGTCGTTAGTTTCTTCTAGAAGGTTCGTAAACGGGAGTTTCTGACAACCGGGAACTAAACGGCCGAGAACACGAACTTTCCGTTGCAAAGCAGGCAATCGCTTCTTCGCCGCTGGTTTCTTTGATTTTATATTGCCGCTATTCAGTTTTGCTTTCTTATGCTTTTTATTGATTTGGCTAAGCCTGAGGCTGAGACGGCCAGTGAGAA</genome_strand>
        <mrna_strand>TTTTTTAAACAGGGAAGAAAAGGAATGTATACAATAAAATACACCAATATAAAAACTCTCAATTATTAACAAAAATAAAAAAAGGGTTTTAGAAATTAAAAAAGAATTAGAAAAAAAAAGAAAAAAGAGGACATGTTGTAACAAGCCACTTAGCCGAGCCGATCGGGGTGAGCGGCAACTGATCCTGCTCCACCGGCGGAGAGGAGGCCGGTCAGAAAAGTCATGGCTTTGATTTGCATCTGTAGAGCTGATATGTAGTCGTTAGTTTCTTCTAGAAGGTTCGTAAACGGGAGTTTCTGACAACCGGGAACTAAACGGCCGAGAACACGAACTTTCCGTTGCAAAGCAGGCAATCGCTTCTTCGCCGCTGGTTTCTTTGATTTTATATTGCCGCTATTCAGTTTTGCTTTCTTATGCTTTTTATTGATTTGGCTAAGCCTGAGGCTGAGACGGCCAGTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613194" ref_strand="+" ref_description="SGN-E613194 [62965]">
      <seq>aaaccataagaaatctaagctgaacagcggcaatataaaatcgaaaaaacagcggcgaagaagcgattgccggctttgcagcggaaagttcgtgttctcggccgtttagttcccggttgtcagaaactcccgtttacgaaccttctagaagaaactaacgactacatatcagctctacagatgcaaatcaaagccatgacttttctgaccggtctgctctccgccggtggagcaggatcagttgccgctcaccccgatcggctcggctaagtggctcgttacaacatgtccttttcttttctaattcttttttaatttctaaacctttttttgttaataattgagagtttttatattggtgtattttattgtatacattccttttcttccctgtttcctctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="117466" stop="118488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117766" g_stop="118188" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E613194" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117766" e_stop="118188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTCTTTTTTTTCTAATTCTTTTTTAATTTCTAAAACCCTTTTTTTATTTTTGTTAATAATTGAGAGTTTTTATATTGGTGTATTTTATTGTATACATTCCTTTTCTTCCCTGTTTCGCTCTCATA</genome_strand>
        <mrna_strand>AAACCATAAGAAATCTAAGCTGAACAGCGGCAATATAAAATCGAA-AAAACAGCGGCGAAGAAGCGATTGCCGGCTTTGCAGCGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGTCTGCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTCGTTACAACATGT-C-C--TTTTC----TTTTCTAATTCTTTTTTAATTTCT-AAA-CC-----TT-TTTTTGTTAATAATTGAGAGTTTTTATATTGGTGTATTTTATTGTATACATTCCTTTTCTTCCCTGTTTC-CTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361746" ref_strand="+" ref_description="SGN-E361746 [cLPP-12-P10]">
      <seq>tcttcaccatttccatggccaaatcttacccatgttgtcaccttctatttatctaaaaggtagacaacaaacactttgggttagctatggatcatatacagtcgagggaaagtgatttcgaggtagatttacagagtgggggaacaactagtgatgaagatggcagttataactatgatctgactggtgaaatttctaatagagagtcgtataaagcgggtagtgagtttcgtggagttcaatcgagcaatggatctgtaaagaaccaagatggttcaagtacatataacaaaagtttaagtgctgatgagctatcatctgttaggcgcacagaaatttggtcaaacaaagtgaaggaagagatggaaaatttgggggacaaaaaaatgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="134558" stop="136481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134858" g_stop="134894" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134895" i_stop="135368" i_length="474">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135369" g_stop="135384" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="52" r_length="16" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135385" i_stop="135840" i_length="456">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135841" g_stop="136181" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="393" r_length="341" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E361746" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134858" e_stop="134894"/>
          <exon e_start="135369" e_stop="135384"/>
          <exon e_start="135841" e_stop="136181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCACCATTTCCATGGCCAAATCTTACCCTTCGATGTATGTATGTAAAACAAATCTTTTTTTTTCTTTTCAAGAATGTGTTTCATCTCTTTCTTATTCATGCCCATTTCCAGTTTTCTCATATTTCCCCTCTTTGGTCGTTTTATTCCTGTTTGGGTTTTTCTTTTAAATTTTACGAATATAGCGTTTGAAGAAAAATGGATTTAATTTCTTTGGATTATTTGAAATATAAAATAATTTTAAATTGAAACCCTATTAGGTATTGTGACCAAATTCGTAAAAGAGAAATTTGTGCATTTATACTATCCTTATTTGTGTAATTTGCTTTATTAAATTCCTAGCTGCAAAGGGACCACTCTTATTTTCGAATTTTTTGATTTGTCATTTTCCATGTCTGTAGTCTGTGTTGGTGAAACGAATCTTCCATGTGATTTACATTATCTTCGCTTTGGCAATTTTAAAATCAACTGCAGTTGTATATATGTGTATTTGTGATTTTCTTGAATCCAGGGTTTGTCCTCTCTATCTGCTCTCGCCCAGACCCCACTTGTGGAACTACACCGGGAATGTTGTTTTATATATGTGTGTATATTGGTGTTGTACTTTTATAAAGCTACACTATATTGAGTGCTTGATTATGGCGTTTCTTCAACATCTATTTTGAAGTTTGTCGAACGTGAGTAGAAGGCGTTATCATGTTTTTTATTAGTCTAAATTTGGATAGCCGTTTTAGCTCAAGTAAATATAATTTTAGTGGAAAGAAGCAAGTGTTCATTTGAATGTTTTGGTGTCTTTTGCTTAATGAAAAAAACAGATTAGCTTTTCCATTGTCTTTAGTTTGTGGATGGCTGCAAGTGTCTTTGATGTCACGAAACGCGAACAAATGTGTTGTACATGGCATAGCTTTTTTTTTGAGAATGATAAGTTACACTGGCATAGCTTTTTAGTAACTTTGTTTGTAAATTTATGTTTTTGTTATCAGCTAAAAGATAGACAACAAACACTTTGGGTTAGCTATGGATCATATACAGTCGAGGGAAAGTGATTTCGAGGTAGATTTAGAGAGTGGGGGAACAACTAGTGATGAAGATGGCAGTTATAACTATGATCTGACTGGTGAAATTTCTAATAGAGAGTCGTATAAAGCGGGTAGTGAGTTTCGTGGAGTTCAATCGTGCAATGGATCTGTAAGGAACCAAGACGGTTCAAGTACATATAACAAAAGTTTAAGTGCTGATGAGCTATCATCTGTTAGGCGTACAGAAATTTTGTCAAACAAAGTGAAGGAAGAGATAGAAAAGTTGGGTGACAAAAAAATGAATA</genome_strand>
        <mrna_strand>TCTTCACCATTTCCATGGCCAAATCTTACCCAT-GTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTTCTATTTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAAGGTAGACAACAAACACTTTGGGTTAGCTATGGATCATATACAGTCGAGGGAAAGTGATTTCGAGGTAGATTTACAGAGTGGGGGAACAACTAGTGATGAAGATGGCAGTTATAACTATGATCTGACTGGTGAAATTTCTAATAGAGAGTCGTATAAAGCGGGTAGTGAGTTTCGTGGAGTTCAATCGAGCAATGGATCTGTAAAGAACCAAGATGGTTCAAGTACATATAACAAAAGTTTAAGTGCTGATGAGCTATCATCTGTTAGGCGCACAGAAATTTGGTCAAACAAAGTGAAGGAAGAGATGGAAAATTTGGGGGACAAAAAAATGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395732" ref_strand="-" ref_description="SGN-E395732 [TUS-17-B20](-)">
      <seq>tgccgagacaacaacactttgggttagctatggatcatatacagtcgagggaaagtgatttcgaggtagatttagagagtgggggaacaactagtgatgaagatggcagttataactatgatctgactggtgaaatttctaataaagagtcgtataaagcgggtagtgagtttcgtggagttcaatcgtgcaatggatctgtaaggaaccaagacggttcaagtacatataacaaaagtttaagtgctgatgagctatcatctgttaggcgtacagaaattttgtcaaacaaagtgaaggaagagatagaaaagttgggtgacaaaaaaatgaatatcgacaaatcaaggaagccaaagcctgctaaaccacctagacccccaaagggtccagcactggacgcctctgatgcaaagttcgtcaaggaaatatctgagcttgctatatggaagcgtagaaggacagaaagaatgaaggcactgaagaaaattaaaaaggagagcggttcatcttcgaggatgaatatattagcaacggtgatcacaattctgttcttcttgattattatatttcaaggtgttttgggctctcgtgtatgacaccagtgtgtatgtcgcctttaaattcagagggtaggttcacatacaacttctttttaacttctctgttcgactggtttatgatatggcatctcaaacagttttagagggagtaactggagattccaatccccgtaatttatctctttttccctccatcttctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="135550" stop="138200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135845" g_stop="136421" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136422" i_stop="137712" i_length="1291">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137713" g_stop="137900" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="765" r_length="189" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E395732" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395732" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="135845" e_stop="136421"/>
          <exon e_start="137713" e_stop="137900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATAGACAACAAACACTTTGGGTTAGCTATGGATCATATACAGTCGAGGGAAAGTGATTTCGAGGTAGATTTAGAGAGTGGGGGAACAACTAGTGATGAAGATGGCAGTTATAACTATGATCTGACTGGTGAAATTTCTAATAGAGAGTCGTATAAAGCGGGTAGTGAGTTTCGTGGAGTTCAATCGTGCAATGGATCTGTAAGGAACCAAGACGGTTCAAGTACATATAACAAAAGTTTAAGTGCTGATGAGCTATCATCTGTTAGGCGTACAGAAATTTTGTCAAACAAAGTGAAGGAAGAGATAGAAAAGTTGGGTGACAAAAAAATGAATATCGACAAATCAAGGAAGCCAAAGCCTGCTAAACCACCTAGACCCCCAAAGGGTCCAGCACTGGACGCCTCTGATGCAAAGTTCGTCAAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATTAAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAGGTACGCTTCATATCCTAGGATATCTGAACTTTTAATTTGTCAGCAGTATTGGAAGTATGAACTACTTTATGAACTTCTTCATAAAGTTTGTTATCATGGAGATCTTTTGAATACAAGTATAATTTGTCAGCAGGATAAGTTCATTTCTTTTGTTTTCAATTCCGTTAGTTTGAAGATATATCTGAGTTTTCCTTTACCTACTGAAATGACTGGGGAAAATGAAGATCACAGCTTTTGTTCCAATACTTCAGTATTCAGTTCTTGCGGGATTGTTGAATTCAAACATATATACTGTGTGATTAAAGGACACAGTCCATTTAATTTGGAGCAATTCAATGAAGCTTCGATGATTATCATCCCTTCTGTTTTTCACTATTCTTGTTCAACTTTCCTTATGAGAACTGTAAATGTGATATGAAATGGTAATGGACACCCAGAAAAAACATGATGAGTTTCTAAAGAGATTTAACAAATAAGAAGAAAGGGAGAGATCAAAATTCTAGATTGCAGCAGTTTCCTTTATACAAAACTATATGTCCTTGCTTATTCAAAATGCTCCGAATAAATGCATGAAGTCAATTTAAGTCTGTCATTATTAAGAGCCAAAACCTCTTGATTTGCAAGCTTAAGATTTGCTCTTCCTCTGGTTGAATCATATAACGTCAGAAGCTTACTGAAACTTCTTTTCTTCATTCTCCTGGATGCATGAAAATCTTAAGCTGGTTGAATTGGTTCACTTCTAGTGTGTTTCAATTGTAGCTGCATATATGTTGATGCCATTAAATAAGTTGTTTCTGATTATCCTGTTAGGCATCATAAGGTGACGACTAAGTTGTGAGATGTCATTTGATAATGTCTGTTCAAAGATTTCTCCTTAGACATAGCTGAACTTCAAGAGATATATCACAGTTGTTATAAGGATATGTCATTTGATAATGTCTTGACAGTGGTCATTATCTGTTAAAAACTTCTTAAACTTCGTCTGCTTTTGCAAAACTAATATCCTCTCCTTTGTGGAAATACATGTGTGTTATATACAAACAACAGAAGAAAATTTCAATACGCAGAAGATTAATTTCTAAGTACATTTGCTATCGTTATTGGGGAAAAATTCATAGACACTGTCTGAGGAGTTACTACGAGCTTGGCTCAACATTGATGGGGAAAATAAAAATACTGTTGCACTAGTTACTTGTCAAATGTACAATGTTGTATACTTTTCTGTTATGCTCCCTTAAATGGATTTTATTCTCAATGAAGTGAATCATGATTATGTTTTCTTATGTTACAGGTGTTTTGGGCTCTCGTGTATGACACCAGTGTGTATGTCGCCTTTAAATTCAGAGGGTAGGTTCACATACAACTTCTTTTTAACTTCTCTGTTCGACTGGTTTATGATATGGCATCTCAAACAGTTTTAGAGGGAGTAACTGGAGATTCCAATCCCCGTAATTTATCTC-TTTTCCTTCCATCTTCTGT</genome_strand>
        <mrna_strand>TGCCGAGACAACAA-CACTTTGGGTTAGCTATGGATCATATACAGTCGAGGGAAAGTGATTTCGAGGTAGATTTAGAGAGTGGGGGAACAACTAGTGATGAAGATGGCAGTTATAACTATGATCTGACTGGTGAAATTTCTAATAAAGAGTCGTATAAAGCGGGTAGTGAGTTTCGTGGAGTTCAATCGTGCAATGGATCTGTAAGGAACCAAGACGGTTCAAGTACATATAACAAAAGTTTAAGTGCTGATGAGCTATCATCTGTTAGGCGTACAGAAATTTTGTCAAACAAAGTGAAGGAAGAGATAGAAAAGTTGGGTGACAAAAAAATGAATATCGACAAATCAAGGAAGCCAAAGCCTGCTAAACCACCTAGACCCCCAAAGGGTCCAGCACTGGACGCCTCTGATGCAAAGTTCGTCAAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATTAAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTTGGGCTCTCGTGTATGACACCAGTGTGTATGTCGCCTTTAAATTCAGAGGGTAGGTTCACATACAACTTCTTTTTAACTTCTCTGTTCGACTGGTTTATGATATGGCATCTCAAACAGTTTTAGAGGGAGTAACTGGAGATTCCAATCCCCGTAATTTATCTCTTTTTCCCTCCATCTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379812" ref_strand="+" ref_description="SGN-E379812 [TUS-3-C9](-)">
      <seq>gccgagacaacaaacactttgggttagctatggatcatatacagtcgagggaaagtgatttcgaggtagatttagagagtgggggaacaactagtgatgaagatggcagttataactatgatctgactggtgaaatttctaataaagagtcgtataaagcgggtagtgagtttcgtggagttcaatcgtgcaatggatctgtaaggaaccaagacggttcaagtacatataacaaaagtttaagtgctgatgagctatcatctgttaggcgtacagaaattttgtcaaacaaagtgaaggaagagatagaaaagttgggtgacaaaaaaatgaatatcgacaaatcaaggaagccaaagcctgctaaaccacctagacccccaaagggtccagcactggacgcctctgatgcaaagttcgtcaaggaaatatctgagcttgctatatggaagcgtagaaggacagaaagaatgaaggcactgaagaaaattaaaaaggagagcggttcatcttcgaggatgaatatattagcaacggtgatcacaattctgttcttcttgattattatatttcaaggtgttttgggctctcgtgtatgacaccagtgtgtatgtcgcctttaaattcagagggtaggttcacatacaacttctttttaacttctctgttcgactggtttatgatatggcatctcaaacagttttagagggagtaactggagattccaatccccgtaatttatctcatttccttccatcttctgtacagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="135550" stop="138208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135846" g_stop="136421" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136422" i_stop="137712" i_length="1291">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137713" g_stop="137908" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="772" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E379812" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135846" e_stop="136421"/>
          <exon e_start="137713" e_stop="137908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAGACAACAAACACTTTGGGTTAGCTATGGATCATATACAGTCGAGGGAAAGTGATTTCGAGGTAGATTTAGAGAGTGGGGGAACAACTAGTGATGAAGATGGCAGTTATAACTATGATCTGACTGGTGAAATTTCTAATAGAGAGTCGTATAAAGCGGGTAGTGAGTTTCGTGGAGTTCAATCGTGCAATGGATCTGTAAGGAACCAAGACGGTTCAAGTACATATAACAAAAGTTTAAGTGCTGATGAGCTATCATCTGTTAGGCGTACAGAAATTTTGTCAAACAAAGTGAAGGAAGAGATAGAAAAGTTGGGTGACAAAAAAATGAATATCGACAAATCAAGGAAGCCAAAGCCTGCTAAACCACCTAGACCCCCAAAGGGTCCAGCACTGGACGCCTCTGATGCAAAGTTCGTCAAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATTAAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAGGTACGCTTCATATCCTAGGATATCTGAACTTTTAATTTGTCAGCAGTATTGGAAGTATGAACTACTTTATGAACTTCTTCATAAAGTTTGTTATCATGGAGATCTTTTGAATACAAGTATAATTTGTCAGCAGGATAAGTTCATTTCTTTTGTTTTCAATTCCGTTAGTTTGAAGATATATCTGAGTTTTCCTTTACCTACTGAAATGACTGGGGAAAATGAAGATCACAGCTTTTGTTCCAATACTTCAGTATTCAGTTCTTGCGGGATTGTTGAATTCAAACATATATACTGTGTGATTAAAGGACACAGTCCATTTAATTTGGAGCAATTCAATGAAGCTTCGATGATTATCATCCCTTCTGTTTTTCACTATTCTTGTTCAACTTTCCTTATGAGAACTGTAAATGTGATATGAAATGGTAATGGACACCCAGAAAAAACATGATGAGTTTCTAAAGAGATTTAACAAATAAGAAGAAAGGGAGAGATCAAAATTCTAGATTGCAGCAGTTTCCTTTATACAAAACTATATGTCCTTGCTTATTCAAAATGCTCCGAATAAATGCATGAAGTCAATTTAAGTCTGTCATTATTAAGAGCCAAAACCTCTTGATTTGCAAGCTTAAGATTTGCTCTTCCTCTGGTTGAATCATATAACGTCAGAAGCTTACTGAAACTTCTTTTCTTCATTCTCCTGGATGCATGAAAATCTTAAGCTGGTTGAATTGGTTCACTTCTAGTGTGTTTCAATTGTAGCTGCATATATGTTGATGCCATTAAATAAGTTGTTTCTGATTATCCTGTTAGGCATCATAAGGTGACGACTAAGTTGTGAGATGTCATTTGATAATGTCTGTTCAAAGATTTCTCCTTAGACATAGCTGAACTTCAAGAGATATATCACAGTTGTTATAAGGATATGTCATTTGATAATGTCTTGACAGTGGTCATTATCTGTTAAAAACTTCTTAAACTTCGTCTGCTTTTGCAAAACTAATATCCTCTCCTTTGTGGAAATACATGTGTGTTATATACAAACAACAGAAGAAAATTTCAATACGCAGAAGATTAATTTCTAAGTACATTTGCTATCGTTATTGGGGAAAAATTCATAGACACTGTCTGAGGAGTTACTACGAGCTTGGCTCAACATTGATGGGGAAAATAAAAATACTGTTGCACTAGTTACTTGTCAAATGTACAATGTTGTATACTTTTCTGTTATGCTCCCTTAAATGGATTTTATTCTCAATGAAGTGAATCATGATTATGTTTTCTTATGTTACAGGTGTTTTGGGCTCTCGTGTATGACACCAGTGTGTATGTCGCCTTTAAATTCAGAGGGTAGGTTCACATACAACTTCTTTTTAACTTCTCTGTTCGACTGGTTTATGATATGGCATCTCAAACAGTTTTAGAGGGAGTAACTGGAGATTCCAATCCCCGTAATTTATCTCTTTTCCTTCCATCTTCTGTACAGAAAT</genome_strand>
        <mrna_strand>GCCGAGACAACAAACACTTTGGGTTAGCTATGGATCATATACAGTCGAGGGAAAGTGATTTCGAGGTAGATTTAGAGAGTGGGGGAACAACTAGTGATGAAGATGGCAGTTATAACTATGATCTGACTGGTGAAATTTCTAATAAAGAGTCGTATAAAGCGGGTAGTGAGTTTCGTGGAGTTCAATCGTGCAATGGATCTGTAAGGAACCAAGACGGTTCAAGTACATATAACAAAAGTTTAAGTGCTGATGAGCTATCATCTGTTAGGCGTACAGAAATTTTGTCAAACAAAGTGAAGGAAGAGATAGAAAAGTTGGGTGACAAAAAAATGAATATCGACAAATCAAGGAAGCCAAAGCCTGCTAAACCACCTAGACCCCCAAAGGGTCCAGCACTGGACGCCTCTGATGCAAAGTTCGTCAAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATTAAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTTGGGCTCTCGTGTATGACACCAGTGTGTATGTCGCCTTTAAATTCAGAGGGTAGGTTCACATACAACTTCTTTTTAACTTCTCTGTTCGACTGGTTTATGATATGGCATCTCAAACAGTTTTAGAGGGAGTAACTGGAGATTCCAATCCCCGTAATTTATCTCATTTCCTTCCATCTTCTGTACAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376433" ref_strand="-" ref_description="SGN-E376433 [TUS-17-B21](-)">
      <seq>gccgagacaacaaacactttgggttagctatggatcatatacagtcgagggaaagtgatttcgaggtagatttagagagtgggggaacaactagtgatgaagatggcagttataactatgatctgactggtgaaatttctaataaagagtcgtataaagcgggtagtgagtttcgtggagttcaatcgtgcaatggatctgtaaggaaccaagacggttcaagtacatataacaaaagtttaagtgctgatgagctatcatctgttaggcgtacagaaattttgtcaaacaaagtgaaggaagagatagaaaagttgggtgacaaaaaaatgaatatcgacaaatcaaggaagccaaagcctgctaaaccacctagacccccaaagggtccagcactggacgcctctgatgcaaagttcgtcaaggaaatatctgagcttgctatatggaagcgtagaaggacagaaagaatgaaggcactgaagaaaattaaaaaggagagcggttcatcttcgaggatgaatatattagcaacggtgatcacaattctgttcttcttgattattatatttcaaggtgttttgggctctcgtgtattgacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="135550" stop="138039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135846" g_stop="136421" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136422" i_stop="137712" i_length="1291">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137713" g_stop="137739" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="604" r_length="28" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E376433" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376433" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="135846" e_stop="136421"/>
          <exon e_start="137713" e_stop="137739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAGACAACAAACACTTTGGGTTAGCTATGGATCATATACAGTCGAGGGAAAGTGATTTCGAGGTAGATTTAGAGAGTGGGGGAACAACTAGTGATGAAGATGGCAGTTATAACTATGATCTGACTGGTGAAATTTCTAATAGAGAGTCGTATAAAGCGGGTAGTGAGTTTCGTGGAGTTCAATCGTGCAATGGATCTGTAAGGAACCAAGACGGTTCAAGTACATATAACAAAAGTTTAAGTGCTGATGAGCTATCATCTGTTAGGCGTACAGAAATTTTGTCAAACAAAGTGAAGGAAGAGATAGAAAAGTTGGGTGACAAAAAAATGAATATCGACAAATCAAGGAAGCCAAAGCCTGCTAAACCACCTAGACCCCCAAAGGGTCCAGCACTGGACGCCTCTGATGCAAAGTTCGTCAAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATTAAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAGGTACGCTTCATATCCTAGGATATCTGAACTTTTAATTTGTCAGCAGTATTGGAAGTATGAACTACTTTATGAACTTCTTCATAAAGTTTGTTATCATGGAGATCTTTTGAATACAAGTATAATTTGTCAGCAGGATAAGTTCATTTCTTTTGTTTTCAATTCCGTTAGTTTGAAGATATATCTGAGTTTTCCTTTACCTACTGAAATGACTGGGGAAAATGAAGATCACAGCTTTTGTTCCAATACTTCAGTATTCAGTTCTTGCGGGATTGTTGAATTCAAACATATATACTGTGTGATTAAAGGACACAGTCCATTTAATTTGGAGCAATTCAATGAAGCTTCGATGATTATCATCCCTTCTGTTTTTCACTATTCTTGTTCAACTTTCCTTATGAGAACTGTAAATGTGATATGAAATGGTAATGGACACCCAGAAAAAACATGATGAGTTTCTAAAGAGATTTAACAAATAAGAAGAAAGGGAGAGATCAAAATTCTAGATTGCAGCAGTTTCCTTTATACAAAACTATATGTCCTTGCTTATTCAAAATGCTCCGAATAAATGCATGAAGTCAATTTAAGTCTGTCATTATTAAGAGCCAAAACCTCTTGATTTGCAAGCTTAAGATTTGCTCTTCCTCTGGTTGAATCATATAACGTCAGAAGCTTACTGAAACTTCTTTTCTTCATTCTCCTGGATGCATGAAAATCTTAAGCTGGTTGAATTGGTTCACTTCTAGTGTGTTTCAATTGTAGCTGCATATATGTTGATGCCATTAAATAAGTTGTTTCTGATTATCCTGTTAGGCATCATAAGGTGACGACTAAGTTGTGAGATGTCATTTGATAATGTCTGTTCAAAGATTTCTCCTTAGACATAGCTGAACTTCAAGAGATATATCACAGTTGTTATAAGGATATGTCATTTGATAATGTCTTGACAGTGGTCATTATCTGTTAAAAACTTCTTAAACTTCGTCTGCTTTTGCAAAACTAATATCCTCTCCTTTGTGGAAATACATGTGTGTTATATACAAACAACAGAAGAAAATTTCAATACGCAGAAGATTAATTTCTAAGTACATTTGCTATCGTTATTGGGGAAAAATTCATAGACACTGTCTGAGGAGTTACTACGAGCTTGGCTCAACATTGATGGGGAAAATAAAAATACTGTTGCACTAGTTACTTGTCAAATGTACAATGTTGTATACTTTTCTGTTATGCTCCCTTAAATGGATTTTATTCTCAATGAAGTGAATCATGATTATGTTTTCTTATGTTACAGGTGTTTTGGGCTCTCGTGTA-TGACACC</genome_strand>
        <mrna_strand>GCCGAGACAACAAACACTTTGGGTTAGCTATGGATCATATACAGTCGAGGGAAAGTGATTTCGAGGTAGATTTAGAGAGTGGGGGAACAACTAGTGATGAAGATGGCAGTTATAACTATGATCTGACTGGTGAAATTTCTAATAAAGAGTCGTATAAAGCGGGTAGTGAGTTTCGTGGAGTTCAATCGTGCAATGGATCTGTAAGGAACCAAGACGGTTCAAGTACATATAACAAAAGTTTAAGTGCTGATGAGCTATCATCTGTTAGGCGTACAGAAATTTTGTCAAACAAAGTGAAGGAAGAGATAGAAAAGTTGGGTGACAAAAAAATGAATATCGACAAATCAAGGAAGCCAAAGCCTGCTAAACCACCTAGACCCCCAAAGGGTCCAGCACTGGACGCCTCTGATGCAAAGTTCGTCAAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATTAAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTTGGGCTCTCGTGTATTGACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E605457" ref_strand="+" ref_description="SGN-E605457 [21378]">
      <seq>tagacaacatacactttgggtttagctatggatcatatacaatcaaaggaaaagtgatttcgaggtagatttagagagtgggggaacaactagtgacgaagatggcagttataactatgatctgactggtgaaatttctaataaagagtcgtataaagcgggtagtgggtttcgtggagttcaatcgtgcaatggatctgtaaggaaccaagatggttcaagtacatataacaagattttaagtgctgatgagctatcatctgttaggcgtacagaaatttggtcaaacaaagtgaaggaagagatggaaaatttgggggacaacaaaatgaatatcgagaagacaaggaagccaaagcctcctaaaccacctagacccccaaagggtccatcactggatgcctctgatgcaaagttcgtccaggaaatatctgagcttgctatatggaagcgtagaaggaccgaaagaatgaaggcactgaagaaaattcaaaaaggagagcggatcatcttcgaggatgaatatattagcaacagtgatcacaattctgttcttcttgattattatatttcaaggtgttttgggctctcgtggtatgacaccagtatgtatgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="135549" stop="138052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135849" g_stop="136421" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136422" i_stop="137712" i_length="1291">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137713" g_stop="137752" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="617" r_length="41" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E605457" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135849" e_stop="136421"/>
          <exon e_start="137713" e_stop="137752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACAACAAACACTTTGGG-TTAGCTATGGATCATATACAGTC-GAGGGAAAGTGATTTCGAGGTAGATTTAGAGAGTGGGGGAACAACTAGTGATGAAGATGGCAGTTATAACTATGATCTGACTGGTGAAATTTCTAATAGAGAGTCGTATAAAGCGGGTAGTGAGTTTCGTGGAGTTCAATCGTGCAATGGATCTGTAAGGAACCAAGACGGTTCAAGTACATATAACAAAAGTTTAAGTGCTGATGAGCTATCATCTGTTAGGCGTACAGAAATTTTGTCAAACAAAGTGAAGGAAGAGATAGAAAAGTTGGGTGACAAAAAAATGAATATCGACAAATCAAGGAAGCCAAAGCCTGCTAAACCACCTAGACCCCCAAAGGGTCCAGCACTGGACGCCTCTGATGCAAAGTTCGTCAAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATT-AAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAGGTACGCTTCATATCCTAGGATATCTGAACTTTTAATTTGTCAGCAGTATTGGAAGTATGAACTACTTTATGAACTTCTTCATAAAGTTTGTTATCATGGAGATCTTTTGAATACAAGTATAATTTGTCAGCAGGATAAGTTCATTTCTTTTGTTTTCAATTCCGTTAGTTTGAAGATATATCTGAGTTTTCCTTTACCTACTGAAATGACTGGGGAAAATGAAGATCACAGCTTTTGTTCCAATACTTCAGTATTCAGTTCTTGCGGGATTGTTGAATTCAAACATATATACTGTGTGATTAAAGGACACAGTCCATTTAATTTGGAGCAATTCAATGAAGCTTCGATGATTATCATCCCTTCTGTTTTTCACTATTCTTGTTCAACTTTCCTTATGAGAACTGTAAATGTGATATGAAATGGTAATGGACACCCAGAAAAAACATGATGAGTTTCTAAAGAGATTTAACAAATAAGAAGAAAGGGAGAGATCAAAATTCTAGATTGCAGCAGTTTCCTTTATACAAAACTATATGTCCTTGCTTATTCAAAATGCTCCGAATAAATGCATGAAGTCAATTTAAGTCTGTCATTATTAAGAGCCAAAACCTCTTGATTTGCAAGCTTAAGATTTGCTCTTCCTCTGGTTGAATCATATAACGTCAGAAGCTTACTGAAACTTCTTTTCTTCATTCTCCTGGATGCATGAAAATCTTAAGCTGGTTGAATTGGTTCACTTCTAGTGTGTTTCAATTGTAGCTGCATATATGTTGATGCCATTAAATAAGTTGTTTCTGATTATCCTGTTAGGCATCATAAGGTGACGACTAAGTTGTGAGATGTCATTTGATAATGTCTGTTCAAAGATTTCTCCTTAGACATAGCTGAACTTCAAGAGATATATCACAGTTGTTATAAGGATATGTCATTTGATAATGTCTTGACAGTGGTCATTATCTGTTAAAAACTTCTTAAACTTCGTCTGCTTTTGCAAAACTAATATCCTCTCCTTTGTGGAAATACATGTGTGTTATATACAAACAACAGAAGAAAATTTCAATACGCAGAAGATTAATTTCTAAGTACATTTGCTATCGTTATTGGGGAAAAATTCATAGACACTGTCTGAGGAGTTACTACGAGCTTGGCTCAACATTGATGGGGAAAATAAAAATACTGTTGCACTAGTTACTTGTCAAATGTACAATGTTGTATACTTTTCTGTTATGCTCCCTTAAATGGATTTTATTCTCAATGAAGTGAATCATGATTATGTTTTCTTATGTTACAGGTGTTTTGGGCTCTCGT-GTATGACACCAGTGTGTATGTCG</genome_strand>
        <mrna_strand>TAGACAACATACACTTTGGGTTTAGCTATGGATCATATACAATCAAAGGAAAAGTGATTTCGAGGTAGATTTAGAGAGTGGGGGAACAACTAGTGACGAAGATGGCAGTTATAACTATGATCTGACTGGTGAAATTTCTAATAAAGAGTCGTATAAAGCGGGTAGTGGGTTTCGTGGAGTTCAATCGTGCAATGGATCTGTAAGGAACCAAGATGGTTCAAGTACATATAACAAGATTTTAAGTGCTGATGAGCTATCATCTGTTAGGCGTACAGAAATTTGGTCAAACAAAGTGAAGGAAGAGATGGAAAATTTGGGGGACAACAAAATGAATATCGAGAAGACAAGGAAGCCAAAGCCTCCTAAACCACCTAGACCCCCAAAGGGTCCATCACTGGATGCCTCTGATGCAAAGTTCGTCCAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACCGAAAGAATGAAGGCACTGAAGAAAATTCAAAAAGGAGAGCGGATCATCTTCGAGGATGAATATATTAGCAACAGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTTGGGCTCTCGTGGTATGACACCAGTATGTATGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450499" ref_strand="+" ref_description="SGN-E450499 [cSTS-9-D21]">
      <seq>tgagatgggcagttataactatgatctgaccggtgaaatttctaataaagagtcttataaagcgggtagtgggtttcgtggagttcaatcatgcaatgggtctgtaaggaaccaagatggttcaagtacatataacaagattttaagtgctgatgagctatcatctgttaggcgtacagaaatttggtcaaacaaagtgaaggaagagatggaaaatttgggggacaagaaaatgaatattgagaagacaaggaagccaaagcctcctaaaccacctagacccccaaagggtccatcactggatgcctctgatgcaaagttcgtcaaggaaatatctgagcttgctatatggaagcgtagaaggaccgaaagaatgaacgcactgaagaaaattaaaaaggagagcggatcatcttcgaggatgaatatattagcaacggtgatcacaattctgttcttcttgattattatatttcaaggtgttttgggctctcgtgtatgacaccagtatgtatgtcgcctttaaattcagtggaactttaccatgcaacaaccaactgctttactgcaagtcaagaatgctaacctanggttacttgtcactttcaacaagaaggangcgcgctcaatcattttactgtacatattatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="135643" stop="138467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135943" g_stop="136421" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136422" i_stop="137712" i_length="1291">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137713" g_stop="137768" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="534" r_length="55" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137769" i_stop="138047" i_length="279">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.560" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138048" g_stop="138166" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="653" r_length="119" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E450499" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135943" e_stop="136421"/>
          <exon e_start="137713" e_stop="137768"/>
          <exon e_start="138048" e_stop="138166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGGCAGTTATAACTATGATCTGACTGGTGAAATTTCTAATAGAGAGTCGTATAAAGCGGGTAGTGAGTTTCGTGGAGTTCAATCGTGCAATGGATCTGTAAGGAACCAAGACGGTTCAAGTACATATAACAAAAGTTTAAGTGCTGATGAGCTATCATCTGTTAGGCGTACAGAAATTTTGTCAAACAAAGTGAAGGAAGAGATAGAAAAGTTGGGTGACAAAAAAATGAATATCGACAAATCAAGGAAGCCAAAGCCTGCTAAACCACCTAGACCCCCAAAGGGTCCAGCACTGGACGCCTCTGATGCAAAGTTCGTCAAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATTAAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAGGTACGCTTCATATCCTAGGATATCTGAACTTTTAATTTGTCAGCAGTATTGGAAGTATGAACTACTTTATGAACTTCTTCATAAAGTTTGTTATCATGGAGATCTTTTGAATACAAGTATAATTTGTCAGCAGGATAAGTTCATTTCTTTTGTTTTCAATTCCGTTAGTTTGAAGATATATCTGAGTTTTCCTTTACCTACTGAAATGACTGGGGAAAATGAAGATCACAGCTTTTGTTCCAATACTTCAGTATTCAGTTCTTGCGGGATTGTTGAATTCAAACATATATACTGTGTGATTAAAGGACACAGTCCATTTAATTTGGAGCAATTCAATGAAGCTTCGATGATTATCATCCCTTCTGTTTTTCACTATTCTTGTTCAACTTTCCTTATGAGAACTGTAAATGTGATATGAAATGGTAATGGACACCCAGAAAAAACATGATGAGTTTCTAAAGAGATTTAACAAATAAGAAGAAAGGGAGAGATCAAAATTCTAGATTGCAGCAGTTTCCTTTATACAAAACTATATGTCCTTGCTTATTCAAAATGCTCCGAATAAATGCATGAAGTCAATTTAAGTCTGTCATTATTAAGAGCCAAAACCTCTTGATTTGCAAGCTTAAGATTTGCTCTTCCTCTGGTTGAATCATATAACGTCAGAAGCTTACTGAAACTTCTTTTCTTCATTCTCCTGGATGCATGAAAATCTTAAGCTGGTTGAATTGGTTCACTTCTAGTGTGTTTCAATTGTAGCTGCATATATGTTGATGCCATTAAATAAGTTGTTTCTGATTATCCTGTTAGGCATCATAAGGTGACGACTAAGTTGTGAGATGTCATTTGATAATGTCTGTTCAAAGATTTCTCCTTAGACATAGCTGAACTTCAAGAGATATATCACAGTTGTTATAAGGATATGTCATTTGATAATGTCTTGACAGTGGTCATTATCTGTTAAAAACTTCTTAAACTTCGTCTGCTTTTGCAAAACTAATATCCTCTCCTTTGTGGAAATACATGTGTGTTATATACAAACAACAGAAGAAAATTTCAATACGCAGAAGATTAATTTCTAAGTACATTTGCTATCGTTATTGGGGAAAAATTCATAGACACTGTCTGAGGAGTTACTACGAGCTTGGCTCAACATTGATGGGGAAAATAAAAATACTGTTGCACTAGTTACTTGTCAAATGTACAATGTTGTATACTTTTCTGTTATGCTCCCTTAAATGGATTTTATTCTCAATGAAGTGAATCATGATTATGTTTTCTTATGTTACAGGTGTTTTGGGCTCTCGTGTATGACACCAGTGTGTATGTCGCCTTTAAATTCAGAGGGTAGGTTCACATACAACTTCTTTTTAACTTCTCTGTTCGACTGGTTTATGATATGGCATCTCAAACAGTTTTAGAGGGAGTAACTGGAGATTCCAATCCCCGTAATTTATCTCTTTTCCTTCCATCTTCTGTACAGAAATGTCGGTCGTGTGTTTATTTATGTATTGAAATAGAAACTAGCTTTCACAAATTTCTTAAGAGATGCATTGTTTATTAGGCACTTAAACAACTACTGGATCATGACGTTAGCTTCCTTTGTTTTCCTTCATATACACACAGGAATTTTACCATGCAACAACCAACTGCTTAACTGTAAGTCAAAATTGCTAACCTAGGGTTACTTGTCACTTTCAACAAGAAGGAAGCACGCTCAATCATTTTACTATACATATTATGTT</genome_strand>
        <mrna_strand>TGAGATGGGCAGTTATAACTATGATCTGACCGGTGAAATTTCTAATAAAGAGTCTTATAAAGCGGGTAGTGGGTTTCGTGGAGTTCAATCATGCAATGGGTCTGTAAGGAACCAAGATGGTTCAAGTACATATAACAAGATTTTAAGTGCTGATGAGCTATCATCTGTTAGGCGTACAGAAATTTGGTCAAACAAAGTGAAGGAAGAGATGGAAAATTTGGGGGACAAGAAAATGAATATTGAGAAGACAAGGAAGCCAAAGCCTCCTAAACCACCTAGACCCCCAAAGGGTCCATCACTGGATGCCTCTGATGCAAAGTTCGTCAAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACCGAAAGAATGAACGCACTGAAGAAAATTAAAAAGGAGAGCGGATCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTTGGGCTCTCGTGTATGACACCAGTATGTATGTCGCCTTTAAATTCAG-TG.......................................................................................................................................................................................................................................................................................GAACTTTACCATGCAACAACCAACTGCTTTACTGCAAGTCAAGAATGCTAACCTANGGTTACTTGTCACTTTCAACAAGAAGGANGCGCGCTCAATCATTTTACTGTACATATTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395733" ref_strand="-" ref_description="SGN-E395733 [TUS-17-B20]">
      <seq>tacagaaattttgtcaaacaaagtgaaggaagagatagaaaagttgggtgacaaaaaaatgaatatcgacaaatcaaggaagccaaagcctgctaaaccacctagacccccaaagggtccagcactggacgcctctgatgcaaagttcgtcaaggaaatatctgagcttgctatatggaagcgtagaaggacagaaagaatgaaggcactgaagaaaattaaaaaggagagcggttcatcttcgaggatgaatatattagcaacggtgatcacaattctgttcttcttgattattatatttcaaggtgttttgggctctcgtgtatgacaccagtgtgtatgtcgcctttaaattcagagggtaggttcacatacaacttctttttaacttctctgttcgactggtttatgatatggcatctcaaacagttttagagggagtaactggagattccaatccccgtaatttatctcttttccttccatcttctgtacagaaatgtcggtcgtgtgtttatttatgtattgaaatagaaactagctttcacaaaaaaaaaaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="135817" stop="138258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136117" g_stop="136421" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136422" i_stop="137712" i_length="1291">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137713" g_stop="137957" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="550" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="574"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E395733" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395733" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="136117" e_stop="136421"/>
          <exon e_start="137713" e_stop="137957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGAAATTTTGTCAAACAAAGTGAAGGAAGAGATAGAAAAGTTGGGTGACAAAAAAATGAATATCGACAAATCAAGGAAGCCAAAGCCTGCTAAACCACCTAGACCCCCAAAGGGTCCAGCACTGGACGCCTCTGATGCAAAGTTCGTCAAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATTAAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAGGTACGCTTCATATCCTAGGATATCTGAACTTTTAATTTGTCAGCAGTATTGGAAGTATGAACTACTTTATGAACTTCTTCATAAAGTTTGTTATCATGGAGATCTTTTGAATACAAGTATAATTTGTCAGCAGGATAAGTTCATTTCTTTTGTTTTCAATTCCGTTAGTTTGAAGATATATCTGAGTTTTCCTTTACCTACTGAAATGACTGGGGAAAATGAAGATCACAGCTTTTGTTCCAATACTTCAGTATTCAGTTCTTGCGGGATTGTTGAATTCAAACATATATACTGTGTGATTAAAGGACACAGTCCATTTAATTTGGAGCAATTCAATGAAGCTTCGATGATTATCATCCCTTCTGTTTTTCACTATTCTTGTTCAACTTTCCTTATGAGAACTGTAAATGTGATATGAAATGGTAATGGACACCCAGAAAAAACATGATGAGTTTCTAAAGAGATTTAACAAATAAGAAGAAAGGGAGAGATCAAAATTCTAGATTGCAGCAGTTTCCTTTATACAAAACTATATGTCCTTGCTTATTCAAAATGCTCCGAATAAATGCATGAAGTCAATTTAAGTCTGTCATTATTAAGAGCCAAAACCTCTTGATTTGCAAGCTTAAGATTTGCTCTTCCTCTGGTTGAATCATATAACGTCAGAAGCTTACTGAAACTTCTTTTCTTCATTCTCCTGGATGCATGAAAATCTTAAGCTGGTTGAATTGGTTCACTTCTAGTGTGTTTCAATTGTAGCTGCATATATGTTGATGCCATTAAATAAGTTGTTTCTGATTATCCTGTTAGGCATCATAAGGTGACGACTAAGTTGTGAGATGTCATTTGATAATGTCTGTTCAAAGATTTCTCCTTAGACATAGCTGAACTTCAAGAGATATATCACAGTTGTTATAAGGATATGTCATTTGATAATGTCTTGACAGTGGTCATTATCTGTTAAAAACTTCTTAAACTTCGTCTGCTTTTGCAAAACTAATATCCTCTCCTTTGTGGAAATACATGTGTGTTATATACAAACAACAGAAGAAAATTTCAATACGCAGAAGATTAATTTCTAAGTACATTTGCTATCGTTATTGGGGAAAAATTCATAGACACTGTCTGAGGAGTTACTACGAGCTTGGCTCAACATTGATGGGGAAAATAAAAATACTGTTGCACTAGTTACTTGTCAAATGTACAATGTTGTATACTTTTCTGTTATGCTCCCTTAAATGGATTTTATTCTCAATGAAGTGAATCATGATTATGTTTTCTTATGTTACAGGTGTTTTGGGCTCTCGTGTATGACACCAGTGTGTATGTCGCCTTTAAATTCAGAGGGTAGGTTCACATACAACTTCTTTTTAACTTCTCTGTTCGACTGGTTTATGATATGGCATCTCAAACAGTTTTAGAGGGAGTAACTGGAGATTCCAATCCCCGTAATTTATCTCTTTTCCTTCCATCTTCTGTACAGAAATGTCGGTCGTGTGTTTATTTATGTATTGAAATAGAAACTAGCTTTCACAA</genome_strand>
        <mrna_strand>TACAGAAATTTTGTCAAACAAAGTGAAGGAAGAGATAGAAAAGTTGGGTGACAAAAAAATGAATATCGACAAATCAAGGAAGCCAAAGCCTGCTAAACCACCTAGACCCCCAAAGGGTCCAGCACTGGACGCCTCTGATGCAAAGTTCGTCAAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATTAAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTTGGGCTCTCGTGTATGACACCAGTGTGTATGTCGCCTTTAAATTCAGAGGGTAGGTTCACATACAACTTCTTTTTAACTTCTCTGTTCGACTGGTTTATGATATGGCATCTCAAACAGTTTTAGAGGGAGTAACTGGAGATTCCAATCCCCGTAATTTATCTCTTTTCCTTCCATCTTCTGTACAGAAATGTCGGTCGTGTGTTTATTTATGTATTGAAATAGAAACTAGCTTTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376434" ref_strand="-" ref_description="SGN-E376434 [TUS-17-B21]">
      <seq>aaagttgggtgacaaaaaaatgaatatcgacaaatcaaggaagccaaagcctgctaaaccacctagacccccaaagggtccagcactggacgcctctgatgcaaagttcgtcaaggaaatatctgagcttgctatatggaagcgtagaaggacagaaagaatgaaggcactgaagaaaattaaaaaggagagcggttcatcttcgaggatgaatatattagcaacggtgatcacaattctgttcttcttgattattatatttcaaggtgttttgggctctcgtgtatgacaccagtgtgtatgtcgcctttaaattcagagggtaggttcacatacaacttctttttaacttctctgttcgactggtttatgatatggcatctcaaacagttttagagggagtaactggagattccaatccccgtaatttatctcttttccttccatcttctgtacagaaatgtcggtcgtgtgtttatttatgtattgaaatagaaactagctttcacaaaaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="135856" stop="138258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136156" g_stop="136421" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136422" i_stop="137712" i_length="1291">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137713" g_stop="137957" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="511" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="535"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E376434" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376434" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="136156" e_stop="136421"/>
          <exon e_start="137713" e_stop="137957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGGGTGACAAAAAAATGAATATCGACAAATCAAGGAAGCCAAAGCCTGCTAAACCACCTAGACCCCCAAAGGGTCCAGCACTGGACGCCTCTGATGCAAAGTTCGTCAAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATTAAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAGGTACGCTTCATATCCTAGGATATCTGAACTTTTAATTTGTCAGCAGTATTGGAAGTATGAACTACTTTATGAACTTCTTCATAAAGTTTGTTATCATGGAGATCTTTTGAATACAAGTATAATTTGTCAGCAGGATAAGTTCATTTCTTTTGTTTTCAATTCCGTTAGTTTGAAGATATATCTGAGTTTTCCTTTACCTACTGAAATGACTGGGGAAAATGAAGATCACAGCTTTTGTTCCAATACTTCAGTATTCAGTTCTTGCGGGATTGTTGAATTCAAACATATATACTGTGTGATTAAAGGACACAGTCCATTTAATTTGGAGCAATTCAATGAAGCTTCGATGATTATCATCCCTTCTGTTTTTCACTATTCTTGTTCAACTTTCCTTATGAGAACTGTAAATGTGATATGAAATGGTAATGGACACCCAGAAAAAACATGATGAGTTTCTAAAGAGATTTAACAAATAAGAAGAAAGGGAGAGATCAAAATTCTAGATTGCAGCAGTTTCCTTTATACAAAACTATATGTCCTTGCTTATTCAAAATGCTCCGAATAAATGCATGAAGTCAATTTAAGTCTGTCATTATTAAGAGCCAAAACCTCTTGATTTGCAAGCTTAAGATTTGCTCTTCCTCTGGTTGAATCATATAACGTCAGAAGCTTACTGAAACTTCTTTTCTTCATTCTCCTGGATGCATGAAAATCTTAAGCTGGTTGAATTGGTTCACTTCTAGTGTGTTTCAATTGTAGCTGCATATATGTTGATGCCATTAAATAAGTTGTTTCTGATTATCCTGTTAGGCATCATAAGGTGACGACTAAGTTGTGAGATGTCATTTGATAATGTCTGTTCAAAGATTTCTCCTTAGACATAGCTGAACTTCAAGAGATATATCACAGTTGTTATAAGGATATGTCATTTGATAATGTCTTGACAGTGGTCATTATCTGTTAAAAACTTCTTAAACTTCGTCTGCTTTTGCAAAACTAATATCCTCTCCTTTGTGGAAATACATGTGTGTTATATACAAACAACAGAAGAAAATTTCAATACGCAGAAGATTAATTTCTAAGTACATTTGCTATCGTTATTGGGGAAAAATTCATAGACACTGTCTGAGGAGTTACTACGAGCTTGGCTCAACATTGATGGGGAAAATAAAAATACTGTTGCACTAGTTACTTGTCAAATGTACAATGTTGTATACTTTTCTGTTATGCTCCCTTAAATGGATTTTATTCTCAATGAAGTGAATCATGATTATGTTTTCTTATGTTACAGGTGTTTTGGGCTCTCGTGTATGACACCAGTGTGTATGTCGCCTTTAAATTCAGAGGGTAGGTTCACATACAACTTCTTTTTAACTTCTCTGTTCGACTGGTTTATGATATGGCATCTCAAACAGTTTTAGAGGGAGTAACTGGAGATTCCAATCCCCGTAATTTATCTCTTTTCCTTCCATCTTCTGTACAGAAATGTCGGTCGTGTGTTTATTTATGTATTGAAATAGAAACTAGCTTTCACAA</genome_strand>
        <mrna_strand>AAAGTTGGGTGACAAAAAAATGAATATCGACAAATCAAGGAAGCCAAAGCCTGCTAAACCACCTAGACCCCCAAAGGGTCCAGCACTGGACGCCTCTGATGCAAAGTTCGTCAAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATTAAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTTGGGCTCTCGTGTATGACACCAGTGTGTATGTCGCCTTTAAATTCAGAGGGTAGGTTCACATACAACTTCTTTTTAACTTCTCTGTTCGACTGGTTTATGATATGGCATCTCAAACAGTTTTAGAGGGAGTAACTGGAGATTCCAATCCCCGTAATTTATCTCTTTTCCTTCCATCTTCTGTACAGAAATGTCGGTCGTGTGTTTATTTATGTATTGAAATAGAAACTAGCTTTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207643" ref_strand="-" ref_description="SGN-E207643 [cLEC-32-F9]">
      <seq>tatctgagcttgctatatggaagcgtagaaggacagaaagaatgaaggcactgaagaaaattaaaaaggagagcggttcatcttcgaggatgaatatattagcaacggtgatcacaattctgttcttcttgattattatatttcaaggtgttttgggctctcgtgtatgacaccagtgtgtatgtcgcctttaaattcagagggtaggttcacatacaacttctttttaacttctctgttcgactggtttatgatatggcatctcaaacagttttagagggagtaactggagattccaatccccgtaatttatctcttttccttccatcttctgtacagaaatgtcggtcgtgtgtttatttatgtattgaaatagaaactagctttcccaaaaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0005L21-dFTJ1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C01HBa0005L21.3" temp_strand="+" temp_description="C01HBa0005L21.3  AC238511.4 htgs_phase:3 submitted_to_sgn_as:C01HBa0005L21 upload_account_name:manual">
        <position start="135975" stop="138258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136275" g_stop="136421" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136422" i_stop="137712" i_length="1291">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137713" g_stop="137957" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="392" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="416"/>
      <MATCH_line gen_id="C01HBa0005L21.3" gen_strand="+" ref_id="SGN-E207643" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0005L21.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207643" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="136275" e_stop="136421"/>
          <exon e_start="137713" e_stop="137957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATTAAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAGGTACGCTTCATATCCTAGGATATCTGAACTTTTAATTTGTCAGCAGTATTGGAAGTATGAACTACTTTATGAACTTCTTCATAAAGTTTGTTATCATGGAGATCTTTTGAATACAAGTATAATTTGTCAGCAGGATAAGTTCATTTCTTTTGTTTTCAATTCCGTTAGTTTGAAGATATATCTGAGTTTTCCTTTACCTACTGAAATGACTGGGGAAAATGAAGATCACAGCTTTTGTTCCAATACTTCAGTATTCAGTTCTTGCGGGATTGTTGAATTCAAACATATATACTGTGTGATTAAAGGACACAGTCCATTTAATTTGGAGCAATTCAATGAAGCTTCGATGATTATCATCCCTTCTGTTTTTCACTATTCTTGTTCAACTTTCCTTATGAGAACTGTAAATGTGATATGAAATGGTAATGGACACCCAGAAAAAACATGATGAGTTTCTAAAGAGATTTAACAAATAAGAAGAAAGGGAGAGATCAAAATTCTAGATTGCAGCAGTTTCCTTTATACAAAACTATATGTCCTTGCTTATTCAAAATGCTCCGAATAAATGCATGAAGTCAATTTAAGTCTGTCATTATTAAGAGCCAAAACCTCTTGATTTGCAAGCTTAAGATTTGCTCTTCCTCTGGTTGAATCATATAACGTCAGAAGCTTACTGAAACTTCTTTTCTTCATTCTCCTGGATGCATGAAAATCTTAAGCTGGTTGAATTGGTTCACTTCTAGTGTGTTTCAATTGTAGCTGCATATATGTTGATGCCATTAAATAAGTTGTTTCTGATTATCCTGTTAGGCATCATAAGGTGACGACTAAGTTGTGAGATGTCATTTGATAATGTCTGTTCAAAGATTTCTCCTTAGACATAGCTGAACTTCAAGAGATATATCACAGTTGTTATAAGGATATGTCATTTGATAATGTCTTGACAGTGGTCATTATCTGTTAAAAACTTCTTAAACTTCGTCTGCTTTTGCAAAACTAATATCCTCTCCTTTGTGGAAATACATGTGTGTTATATACAAACAACAGAAGAAAATTTCAATACGCAGAAGATTAATTTCTAAGTACATTTGCTATCGTTATTGGGGAAAAATTCATAGACACTGTCTGAGGAGTTACTACGAGCTTGGCTCAACATTGATGGGGAAAATAAAAATACTGTTGCACTAGTTACTTGTCAAATGTACAATGTTGTATACTTTTCTGTTATGCTCCCTTAAATGGATTTTATTCTCAATGAAGTGAATCATGATTATGTTTTCTTATGTTACAGGTGTTTTGGGCTCTCGTGTATGACACCAGTGTGTATGTCGCCTTTAAATTCAGAGGGTAGGTTCACATACAACTTCTTTTTAACTTCTCTGTTCGACTGGTTTATGATATGGCATCTCAAACAGTTTTAGAGGGAGTAACTGGAGATTCCAATCCCCGTAATTTATCTCTTTTCCTTCCATCTTCTGTACAGAAATGTCGGTCGTGTGTTTATTTATGTATTGAAATAGAAACTAGCTTTCACAA</genome_strand>
        <mrna_strand>TATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATTAAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTTGGGCTCTCGTGTATGACACCAGTGTGTATGTCGCCTTTAAATTCAGAGGGTAGGTTCACATACAACTTCTTTTTAACTTCTCTGTTCGACTGGTTTATGATATGGCATCTCAAACAGTTTTAGAGGGAGTAACTGGAGATTCCAATCCCCGTAATTTATCTCTTTTCCTTCCATCTTCTGTACAGAAATGTCGGTCGTGTGTTTATTTATGTATTGAAATAGAAACTAGCTTTCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>264</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5493" PGL_stop="865"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5493" e_stop="5290"/>
            <exon e_start="5187" e_stop="5068"/>
            <exon e_start="4259" e_stop="4142"/>
            <exon e_start="4037" e_stop="3945"/>
            <exon e_start="3242" e_stop="3197"/>
            <exon e_start="3045" e_stop="2973"/>
            <exon e_start="2188" e_stop="2154"/>
            <exon e_start="2058" e_stop="1970"/>
            <exon e_start="1294" e_stop="865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.396" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.499" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.836" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5493" e_stop="5290" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.396" acc_prob="0.996">
            <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5187" e_stop="5068" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.986">
            <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4259" e_stop="4142" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.499" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4037" e_stop="3945" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702"/>
          </intron>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1232" stop="869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1225" stop="900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTACTCCAACACTCAACTCTTTAAATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG : GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG : AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT : AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG : GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG : GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG : TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG : GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG : GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAATTCTTTACCCCATGT</gDNA_template>
            <first_frame> C  L  L  Q  H  S  T  L  *  I  A  P  K  K  P  I  F  F  L  F  I  Y  T  K  L  N  P  P  N  G  S  F  L  H  S  H  N  F  I  S  L  *  I  Q  F  R  N  F  P  I  *  L  L  Q  Y  F  S  H  I  S  T  V  *  T  S  F  F  E  :  E  S  K  G  C  W  E  S  E  K  *  G  K  *  H  R  Q  G  C  V  F  W  R  *  L  G  F  S  K  G  F  T  F  F  W  N  L  V  Y  Q  :  R  *  R  A  N  T  I  I  T  L  F  S  Y  I  C  R  P  R  S  R  T  T  A  N  G  T  R  T  I  S  E  C  D  Q  P  A  L  S  I   : *  D  H  T  M  W  W  S  S  *  *  *  Y  G  *  C  H  S  C  S  A  S  L  S  *  C  C  *  S  H  K   : G  H  C  Y  V  C  Q  F  S  R  R  V  S  N  S  R :   N  G  C  F  *  Y  H  A  T  Y  S  T  R  C  L  N  C  L  C  W  T  R  C  K  :  Y  G  G  F  S  S  Q  C  W  H  *  R :   E  E  I  *  L  A  K  F  K  D  N  D  S  P  A  S  R  W  C  S  R  W  S  K  *  Y  R  N  T   : G  *  *  D  V  A  S  Q  S  K  F  E  W  L  P  C  L  P  D  W  S  K  P  *  *  D  *  S  G  Y  *  S  *  F  F  H  E  R  K  G  S  *  G  V  R  A  N  R  W  C  H  H  E  S  N  E  S  P  S  T  T  C  S  S  C  *  T  I  V  V  V  L  Q  G  R  L  I  F  Y  L  S  F  C  F  S  L  I  H  S  S  L  E  I  V  I  D  F  T  K  L  G  R  H  N  I  P  A  A  R  K  K  M  Y  A  K  I  F  T  C  W  E  R  V  *  C  T  C  P  D  L  I  *  M  F  P  H  I  S  N  S  L  P  H   </first_frame>
            <second_frame>  V  Y  S  N  T  Q  L  F  K  L  P  Q  K  N  L  S  F  S  S  S  S  T  P  N  S  T  P  P  M  A  H  S  C  I  A  T  T  S  S  L  S  K  Y  N  S  A  I  F  P  S  D  Y  C  N  I  S  P  I  S  L  Q  F  K  R  L  S  L  R :   K  V  K  A  V  G  K  V  K  S  R  G  N  S  T  V  K  A  V  Y  S  G  G  D  W  D  L  A  K  A  S  R  S  S  G  I  W  S  I  R :   D  D  V  Q  I  P  S  S  P  Y  F  P  T  Y  A  A  Q  G  Q  G  P  P  P  M  V  Q  E  R  F  Q  S  V  I  S  Q  L  F  Q  Y  :  R  I  I  R  C  G  G  A  V  D  D  D  M  A  N  V  I  V  A  Q  L  L  Y  L  D  A  V  D  P  T  K  :  D  I  V  M  Y  V  N  S  P  G  G  S  V  T  A   : G  M  A  V  F  D  T  M  R  H  I  R  P  D  V  S  T  V  C  V  G  L  A  A  S :   M  G  A  F  L  L  S  A  G  T  K   : G  K  R  Y  S  L  P  N  S  R  I  M  I  H  Q  P  L  G  G  A  Q  G  G  Q  S  D  I  E  I  Q  :  A  N  E  M  L  H  H  K  A  N  L  N  G  Y  L  A  Y  Q  T  G  Q  S  L  D  R  I  N  Q  D  T  D  R  D  F  F  M  S  A  K  E  A  K  E  Y  G  L  I  D  G  V  I  M  N  P  M  K  A  L  Q  P  L  A  A  A  A  E  Q  S  *  L  Y  C  K  E  G  *  F  S  T  Y  H  F  V  S  H  *  Y  T  R  L  *  R  L  *  L  I  L  L  S  W  V  D  T  T  F  L  L  P  G  R  K  C  M  P  K  F  L  L  V  G  K  E  C  N  V  P  A  Q  I  L  Y  R  C  F  L  I  S  A  I  L  Y  P  M  </second_frame>
            <third_frame>   F  T  P  T  L  N  S  L  N  C  P  K  K  T  Y  L  F  P  L  H  L  H  Q  T  Q  P  P  Q  W  L  I  L  A  *  P  Q  L  H  L  S  L  N  T  I  P  Q  F  S  H  L  I  I  A  I  F  L  P  Y  L  Y  S  L  N  V  F  L  *   : G  K  *  R  L  L  G  K  *  K  V  G  E  I  A  P  S  R  L  C  I  L  E  V  T  G  I  *  Q  R  L  H  V  L  L  E  F  G  L  S   : E  M  T  C  K  Y  H  H  H  L  I  F  L  H  M  P  P  K  V  K  D  H  R  Q  W  Y  K  N  D  F  R  V  *  S  A  S  S  F  N  I :   G  S  Y  D  V  V  E  Q  L  M  M  I  W  L  M  S  *  L  L  S  F  F  I  L  M  L  L  I  P  Q  R :   T  L  L  C  M  S  I  L  Q  E  G  Q  *  Q  Q  :  E  W  L  F  L  I  P  C  D  I  F  D  P  M  S  Q  L  S  V  L  D  S  L  Q   : V  W  G  L  F  F  S  V  L  A  L  K  :  G  R  D  I  A  C  Q  I  Q  G  *  *  F  T  S  L  *  V  V  L  K  V  V  K  V  I  *  K  Y  R :   L  M  R  C  C  I  T  K  Q  I  *  M  V  T  L  P  T  R  L  V  K  A  L  I  G  L  I  R  I  L  I  V  I  F  S  *  A  Q  R  K  L  R  S  T  G  *  S  M  V  S  S  *  I  Q  *  K  P  F  N  H  L  Q  Q  L  L  N  N  R  S  C  I  A  R  K  V  N  F  L  P  I  I  L  F  L  I  N  T  L  V  F  R  D  C  N  *  F  Y  *  V  G  *  T  Q  H  S  C  C  Q  E  E  N  V  C  Q  N  F  Y  L  L  G  K  S  V  M  Y  L  P  R  S  Y  I  D  V  S  S  Y  Q  Q  F  F  T  P  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5492" stop="5290"/>
                    <exon start="5187" stop="5068"/>
                    <exon start="4259" stop="4142"/>
                    <exon start="4037" stop="3945"/>
                    <exon start="3242" stop="3197"/>
                    <exon start="3045" stop="2973"/>
                    <exon start="2188" stop="2154"/>
                    <exon start="2058" stop="1970"/>
                    <exon start="1294" stop="1088"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>981</number_coding_nucleotides>
                  <number_encoded_amino_acids>327</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYSNTQLFKLPQKNLSFSSSSTPNSTPPMAHSCIATTSSLSKYNSAIFPSDYCNISPISLQFKRLSLRKVKAVGKVKSRGNSTVKAVYSGGDWDLAKASRSSGIWSIRDDVQIPSSPYFPTYAAQGQGPPPMVQERFQSVISQLFQYRIIRCGGAVDDDMANVIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIEIQANEMLHHKANLNGYLAYQTGQSLDRINQDTDRDFFMSAKEAKEYGLIDGVIMNPMKALQPLAAAAEQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5492" e_stop="5290"/>
            <exon e_start="5187" e_stop="5068"/>
            <exon e_start="4259" e_stop="4142"/>
            <exon e_start="4037" e_stop="3945"/>
            <exon e_start="3242" e_stop="3197"/>
            <exon e_start="3045" e_stop="2973"/>
            <exon e_start="2188" e_stop="2154"/>
            <exon e_start="2058" e_stop="1970"/>
            <exon e_start="1177" e_stop="895"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.396" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.499" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5492" e_stop="5290" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.396" acc_prob="0.996">
            <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5187" e_stop="5068" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.986">
            <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4259" e_stop="4142" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.499" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4037" e_stop="3945" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3242" e_stop="3197" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3045" e_stop="2973" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.987">
            <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2188" e_stop="2154" e_length="35"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="2058" e_stop="1970" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1969" i_stop="1178" i_length="792"/>
          </intron>
          <exon e_serial="9" e_score="0.975">
            <gDNA_exon_boundary e_start="1177" e_stop="895" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5492" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5476" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="2017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5476" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5474" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="1970"/>
              <exon start="1177" stop="1118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5456" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237363" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5456" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="4004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236904" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5455" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5455" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5455" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5454" stop="5290"/>
              <exon start="5187" stop="5153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5438" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="3014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5432" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5424" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="2019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5424" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5424" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="3013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5424" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5413" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5413" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5407" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5404" stop="5290"/>
              <exon start="5187" stop="5130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5400" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5394" stop="5290"/>
              <exon start="5187" stop="5071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5386" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5314" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="2011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4150" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="2022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3217" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="1970"/>
              <exon start="1177" stop="895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717346" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTACTCCAACACTCAACTCTTTAAATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG : GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG : AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT : AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG : GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG : GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG : TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG : GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG : GAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTT</gDNA_template>
            <first_frame> V  Y  S  N  T  Q  L  F  K  L  P  Q  K  N  L  S  F  S  S  S  S  T  P  N  S  T  P  P  M  A  H  S  C  I  A  T  T  S  S  L  S  K  Y  N  S  A  I  F  P  S  D  Y  C  N  I  S  P  I  S  L  Q  F  K  R  L  S  L  R :   K  V  K  A  V  G  K  V  K  S  R  G  N  S  T  V  K  A  V  Y  S  G  G  D  W  D  L  A  K  A  S  R  S  S  G  I  W  S  I  R :   D  D  V  Q  I  P  S  S  P  Y  F  P  T  Y  A  A  Q  G  Q  G  P  P  P  M  V  Q  E  R  F  Q  S  V  I  S  Q  L  F  Q  Y  :  R  I  I  R  C  G  G  A  V  D  D  D  M  A  N  V  I  V  A  Q  L  L  Y  L  D  A  V  D  P  T  K  :  D  I  V  M  Y  V  N  S  P  G  G  S  V  T  A   : G  M  A  V  F  D  T  M  R  H  I  R  P  D  V  S  T  V  C  V  G  L  A  A  S :   M  G  A  F  L  L  S  A  G  T  K   : G  K  R  Y  S  L  P  N  S  R  I  M  I  H  Q  P  L  G  G  A  Q  G  G  Q  S  D  I  E  I  Q  :  E  A  K  E  Y  G  L  I  D  G  V  I  M  N  P  M  K  A  L  Q  P  L  A  A  A  A  E  Q  S  *  L  Y  C  K  E  G  *  F  S  T  Y  H  F  V  S  H  *  Y  T  R  L  *  R  L  *  L  I  L  L  S  W  V  D  T  T  F  L  L  P  G  R  K  C  M  P  K  F  L  L  V  G  K  E  C  N  V  P  A  Q  I  L  Y  R  C  </first_frame>
            <second_frame>  F  T  P  T  L  N  S  L  N  C  P  K  K  T  Y  L  F  P  L  H  L  H  Q  T  Q  P  P  Q  W  L  I  L  A  *  P  Q  L  H  L  S  L  N  T  I  P  Q  F  S  H  L  I  I  A  I  F  L  P  Y  L  Y  S  L  N  V  F  L  *   : G  K  *  R  L  L  G  K  *  K  V  G  E  I  A  P  S  R  L  C  I  L  E  V  T  G  I  *  Q  R  L  H  V  L  L  E  F  G  L  S   : E  M  T  C  K  Y  H  H  H  L  I  F  L  H  M  P  P  K  V  K  D  H  R  Q  W  Y  K  N  D  F  R  V  *  S  A  S  S  F  N  I :   G  S  Y  D  V  V  E  Q  L  M  M  I  W  L  M  S  *  L  L  S  F  F  I  L  M  L  L  I  P  Q  R :   T  L  L  C  M  S  I  L  Q  E  G  Q  *  Q  Q  :  E  W  L  F  L  I  P  C  D  I  F  D  P  M  S  Q  L  S  V  L  D  S  L  Q   : V  W  G  L  F  F  S  V  L  A  L  K  :  G  R  D  I  A  C  Q  I  Q  G  *  *  F  T  S  L  *  V  V  L  K  V  V  K  V  I  *  K  Y  R :   K  L  R  S  T  G  *  S  M  V  S  S  *  I  Q  *  K  P  F  N  H  L  Q  Q  L  L  N  N  R  S  C  I  A  R  K  V  N  F  L  P  I  I  L  F  L  I  N  T  L  V  F  R  D  C  N  *  F  Y  *  V  G  *  T  Q  H  S  C  C  Q  E  E  N  V  C  Q  N  F  Y  L  L  G  K  S  V  M  Y  L  P  R  S  Y  I  D  V </second_frame>
            <third_frame>   L  L  Q  H  S  T  L  *  I  A  P  K  K  P  I  F  F  L  F  I  Y  T  K  L  N  P  P  N  G  S  F  L  H  S  H  N  F  I  S  L  *  I  Q  F  R  N  F  P  I  *  L  L  Q  Y  F  S  H  I  S  T  V  *  T  S  F  F  E  :  E  S  K  G  C  W  E  S  E  K  *  G  K  *  H  R  Q  G  C  V  F  W  R  *  L  G  F  S  K  G  F  T  F  F  W  N  L  V  Y  Q  :  R  *  R  A  N  T  I  I  T  L  F  S  Y  I  C  R  P  R  S  R  T  T  A  N  G  T  R  T  I  S  E  C  D  Q  P  A  L  S  I   : *  D  H  T  M  W  W  S  S  *  *  *  Y  G  *  C  H  S  C  S  A  S  L  S  *  C  C  *  S  H  K   : G  H  C  Y  V  C  Q  F  S  R  R  V  S  N  S  R :   N  G  C  F  *  Y  H  A  T  Y  S  T  R  C  L  N  C  L  C  W  T  R  C  K  :  Y  G  G  F  S  S  Q  C  W  H  *  R :   E  E  I  *  L  A  K  F  K  D  N  D  S  P  A  S  R  W  C  S  R  W  S  K  *  Y  R  N  T   : G  S  *  G  V  R  A  N  R  W  C  H  H  E  S  N  E  S  P  S  T  T  C  S  S  C  *  T  I  V  V  V  L  Q  G  R  L  I  F  Y  L  S  F  C  F  S  L  I  H  S  S  L  E  I  V  I  D  F  T  K  L  G  R  H  N  I  P  A  A  R  K  K  M  Y  A  K  I  F  T  C  W  E  R  V  *  C  T  C  P  D  L  I  *  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5492" stop="5290"/>
                    <exon start="5187" stop="5068"/>
                    <exon start="4259" stop="4142"/>
                    <exon start="4037" stop="3945"/>
                    <exon start="3242" stop="3197"/>
                    <exon start="3045" stop="2973"/>
                    <exon start="2188" stop="2154"/>
                    <exon start="2058" stop="1970"/>
                    <exon start="1177" stop="1088"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYSNTQLFKLPQKNLSFSSSSTPNSTPPMAHSCIATTSSLSKYNSAIFPSDYCNISPISLQFKRLSLRKVKAVGKVKSRGNSTVKAVYSGGDWDLAKASRSSGIWSIRDDVQIPSSPYFPTYAAQGQGPPPMVQERFQSVISQLFQYRIIRCGGAVDDDMANVIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIEIQEAKEYGLIDGVIMNPMKALQPLAAAAEQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="5492" e_stop="5290"/>
            <exon e_start="5187" e_stop="5068"/>
            <exon e_start="4259" e_stop="4142"/>
            <exon e_start="4037" e_stop="3945"/>
            <exon e_start="3242" e_stop="3197"/>
            <exon e_start="3045" e_stop="2641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.396" acc_prob="0.996" e_score="0.970"/>
          <exon-intron don_prob="0.976" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.499" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="5492" e_stop="5290" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.396" acc_prob="0.996">
            <gDNA_intron_boundary i_start="5289" i_stop="5188" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5187" e_stop="5068" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.986">
            <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4259" e_stop="4142" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.499" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4037" e_stop="3945" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3242" e_stop="3197" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="3045" e_stop="2641" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5492" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5476" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5456" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237363" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5456" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="4004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236904" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5455" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5455" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5455" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5454" stop="5290"/>
              <exon start="5187" stop="5153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5438" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="3014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5432" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5424" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5424" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="3013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5424" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5413" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5412" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5412" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5407" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5404" stop="5290"/>
              <exon start="5187" stop="5130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5400" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5394" stop="5290"/>
              <exon start="5187" stop="5071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5386" stop="5290"/>
              <exon start="5187" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4012" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269159" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTACTCCAACACTCAACTCTTTAAATTGCCCCAAAAAAACCTATCTTTTTCCTCTTCATCTACACCAAACTCAACCCCCCCAATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG : GAAAGTAAAGGCTGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG : AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT : AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG : GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG : GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAGGTACCTGATTGATTACTTGTGTACCTGTGTGTTTCACTTAGAAGATGATCTTTCATACATTGTTGTTGTGTTGCATATTTGTGTGAAAATCACCTTTGCTTAACCCATGATAGGACTACATAGCTTTCCAGTGTAGGTTCTTTTATTTGTTTATCTATTTGATTAACTTTCCAATTCCTTTCATTTATTGCCATTTTTTGCAGCCTCCTTTCATTTAGGTACTTCACACTCCTCTATTTTGGTGCAAAAGTTCACCAACAAAATATTTGAAAATGTTGAAAATATTTGAAAATGTTGGGATTAGATTTGTTGTTCCTTCTTCTCTTCCTCTC</gDNA_template>
            <first_frame> V  Y  S  N  T  Q  L  F  K  L  P  Q  K  N  L  S  F  S  S  S  S  T  P  N  S  T  P  P  M  A  H  S  C  I  A  T  T  S  S  L  S  K  Y  N  S  A  I  F  P  S  D  Y  C  N  I  S  P  I  S  L  Q  F  K  R  L  S  L  R :   K  V  K  A  V  G  K  V  K  S  R  G  N  S  T  V  K  A  V  Y  S  G  G  D  W  D  L  A  K  A  S  R  S  S  G  I  W  S  I  R :   D  D  V  Q  I  P  S  S  P  Y  F  P  T  Y  A  A  Q  G  Q  G  P  P  P  M  V  Q  E  R  F  Q  S  V  I  S  Q  L  F  Q  Y  :  R  I  I  R  C  G  G  A  V  D  D  D  M  A  N  V  I  V  A  Q  L  L  Y  L  D  A  V  D  P  T  K  :  D  I  V  M  Y  V  N  S  P  G  G  S  V  T  A   : G  M  A  V  F  D  T  M  R  H  I  R  P  D  V  S  T  V  C  V  G  L  A  A  R  Y  L  I  D  Y  L  C  T  C  V  F  H  L  E  D  D  L  S  Y  I  V  V  V  L  H  I  C  V  K  I  T  F  A  *  P  M  I  G  L  H  S  F  P  V  *  V  L  L  F  V  Y  L  F  D  *  L  S  N  S  F  H  L  L  P  F  F  A  A  S  F  H  L  G  T  S  H  S  S  I  L  V  Q  K  F  T  N  K  I  F  E  N  V  E  N  I  *  K  C  W  D  *  I  C  C  S  F  F  S  S  S  </first_frame>
            <second_frame>  F  T  P  T  L  N  S  L  N  C  P  K  K  T  Y  L  F  P  L  H  L  H  Q  T  Q  P  P  Q  W  L  I  L  A  *  P  Q  L  H  L  S  L  N  T  I  P  Q  F  S  H  L  I  I  A  I  F  L  P  Y  L  Y  S  L  N  V  F  L  *   : G  K  *  R  L  L  G  K  *  K  V  G  E  I  A  P  S  R  L  C  I  L  E  V  T  G  I  *  Q  R  L  H  V  L  L  E  F  G  L  S   : E  M  T  C  K  Y  H  H  H  L  I  F  L  H  M  P  P  K  V  K  D  H  R  Q  W  Y  K  N  D  F  R  V  *  S  A  S  S  F  N  I :   G  S  Y  D  V  V  E  Q  L  M  M  I  W  L  M  S  *  L  L  S  F  F  I  L  M  L  L  I  P  Q  R :   T  L  L  C  M  S  I  L  Q  E  G  Q  *  Q  Q  :  E  W  L  F  L  I  P  C  D  I  F  D  P  M  S  Q  L  S  V  L  D  S  L  Q  G  T  *  L  I  T  C  V  P  V  C  F  T  *  K  M  I  F  H  T  L  L  L  C  C  I  F  V  *  K  S  P  L  L  N  P  *  *  D  Y  I  A  F  Q  C  R  F  F  Y  L  F  I  Y  L  I  N  F  P  I  P  F  I  Y  C  H  F  L  Q  P  P  F  I  *  V  L  H  T  P  L  F  W  C  K  S  S  P  T  K  Y  L  K  M  L  K  I  F  E  N  V  G  I  R  F  V  V  P  S  S  L  P  L </second_frame>
            <third_frame>   L  L  Q  H  S  T  L  *  I  A  P  K  K  P  I  F  F  L  F  I  Y  T  K  L  N  P  P  N  G  S  F  L  H  S  H  N  F  I  S  L  *  I  Q  F  R  N  F  P  I  *  L  L  Q  Y  F  S  H  I  S  T  V  *  T  S  F  F  E  :  E  S  K  G  C  W  E  S  E  K  *  G  K  *  H  R  Q  G  C  V  F  W  R  *  L  G  F  S  K  G  F  T  F  F  W  N  L  V  Y  Q  :  R  *  R  A  N  T  I  I  T  L  F  S  Y  I  C  R  P  R  S  R  T  T  A  N  G  T  R  T  I  S  E  C  D  Q  P  A  L  S  I   : *  D  H  T  M  W  W  S  S  *  *  *  Y  G  *  C  H  S  C  S  A  S  L  S  *  C  C  *  S  H  K   : G  H  C  Y  V  C  Q  F  S  R  R  V  S  N  S  R :   N  G  C  F  *  Y  H  A  T  Y  S  T  R  C  L  N  C  L  C  W  T  R  C  K  V  P  D  *  L  L  V  Y  L  C  V  S  L  R  R  *  S  F  I  H  C  C  C  V  A  Y  L  C  E  N  H  L  C  L  T  H  D  R  T  T  *  L  S  S  V  G  S  F  I  C  L  S  I  *  L  T  F  Q  F  L  S  F  I  A  I  F  C  S  L  L  S  F  R  Y  F  T  L  L  Y  F  G  A  K  V  H  Q  Q  N  I  *  K  C  *  K  Y  L  K  M  L  G  L  D  L  L  F  L  L  L  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5492" stop="5290"/>
                    <exon start="5187" stop="5068"/>
                    <exon start="4259" stop="4142"/>
                    <exon start="4037" stop="3945"/>
                    <exon start="3242" stop="3197"/>
                    <exon start="3045" stop="2870"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYSNTQLFKLPQKNLSFSSSSTPNSTPPMAHSCIATTSSLSKYNSAIFPSDYCNISPISLQFKRLSLRKVKAVGKVKSRGNSTVKAVYSGGDWDLAKASRSSGIWSIRDDVQIPSSPYFPTYAAQGQGPPPMVQERFQSVISQLFQYRIIRCGGAVDDDMANVIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAARYLIDYLCTCVFHLEDDLSYIVVVLHICVKITFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="5409" e_stop="5290"/>
            <exon e_start="5175" e_stop="5068"/>
            <exon e_start="4259" e_stop="4142"/>
            <exon e_start="4037" e_stop="3945"/>
            <exon e_start="3242" e_stop="3197"/>
            <exon e_start="3045" e_stop="2973"/>
            <exon e_start="2188" e_stop="2154"/>
            <exon e_start="2058" e_stop="1970"/>
            <exon e_start="1294" e_stop="865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.396" acc_prob="0.000" e_score="0.933"/>
          <exon-intron don_prob="0.976" acc_prob="0.986" e_score="0.926"/>
          <exon-intron don_prob="0.499" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.836" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="5409" e_stop="5290" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.396" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5289" i_stop="5176" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="5175" e_stop="5068" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.986">
            <gDNA_intron_boundary i_start="5067" i_stop="4260" i_length="808"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4259" e_stop="4142" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.499" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4141" i_stop="4038" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4037" e_stop="3945" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3944" i_stop="3243" i_length="702"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3242" e_stop="3197" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="3196" i_stop="3046" i_length="151"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3045" e_stop="2973" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.987">
            <gDNA_intron_boundary i_start="2972" i_stop="2189" i_length="784"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2188" e_stop="2154" e_length="35"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="2153" i_stop="2059" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="2058" e_stop="1970" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.836">
            <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="1294" e_stop="865" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5409" stop="5290"/>
              <exon start="5175" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="1991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5409" stop="5290"/>
              <exon start="5175" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="2053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5409" stop="5290"/>
              <exon start="5175" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5405" stop="5290"/>
              <exon start="5175" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="1970"/>
              <exon start="1294" stop="1254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5111" stop="5068"/>
              <exon start="4259" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="1970"/>
              <exon start="1294" stop="1047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4204" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="1970"/>
              <exon start="1294" stop="1267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4171" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="1970"/>
              <exon start="1294" stop="1092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4150" stop="4142"/>
              <exon start="4037" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="2022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4024" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="1970"/>
              <exon start="1294" stop="881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3999" stop="3945"/>
              <exon start="3242" stop="3197"/>
              <exon start="3045" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="1970"/>
              <exon start="1294" stop="888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3022" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="1970"/>
              <exon start="1294" stop="890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3022" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="1970"/>
              <exon start="1294" stop="914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3001" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="1970"/>
              <exon start="1294" stop="890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2992" stop="2973"/>
              <exon start="2188" stop="2154"/>
              <exon start="2058" stop="1970"/>
              <exon start="1294" stop="878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2164" stop="2154"/>
              <exon start="2058" stop="1970"/>
              <exon start="1294" stop="865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2163" stop="2154"/>
              <exon start="2058" stop="1970"/>
              <exon start="1294" stop="873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2163" stop="2154"/>
              <exon start="2058" stop="1970"/>
              <exon start="1294" stop="873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2000" stop="1970"/>
              <exon start="1294" stop="873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1291" stop="900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1232" stop="869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1225" stop="900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGGCTCATTCTTGCATAGCCACAACTTCATCTCTCTCTAAATACAATTCCGCAATTTTCCCATCTGATTATTGCAATATTTCTCCCATATCTCTACAGTTTAAACGTCTTTCTTTGAG : TGTTGGGAAAGTGAAAAGTAGGGGAAATAGCACCGTCAAGGCTGTGTATTCTGGAGGTGACTGGGATTTAGCAAAGGCTTCACGTTCTTCTGGAATTTGGTCTATCAG : AGATGACGTGCAAATACCATCATCACCTTATTTTCCTACATATGCCGCCCAAGGTCAAGGACCACCGCCAATGGTACAAGAACGATTTCAGAGTGTGATCAGCCAGCTCTTTCAATAT : AGGATCATACGATGTGGTGGAGCAGTTGATGATGATATGGCTAATGTCATAGTTGCTCAGCTTCTTTATCTTGATGCTGTTGATCCCACAAAG : GACATTGTTATGTATGTCAATTCTCCAGGAGGGTCAGTAACAGCAG : GAATGGCTGTTTTTGATACCATGCGACATATTCGACCCGATGTCTCAACTGTCTGTGTTGGACTCGCTGCAAG : TATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAG : GGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG : GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAATTCTTTACCCCATGT</gDNA_template>
            <first_frame> N  G  S  F  L  H  S  H  N  F  I  S  L  *  I  Q  F  R  N  F  P  I  *  L  L  Q  Y  F  S  H  I  S  T  V  *  T  S  F  F  E  :  C  W  E  S  E  K  *  G  K  *  H  R  Q  G  C  V  F  W  R  *  L  G  F  S  K  G  F  T  F  F  W  N  L  V  Y  Q  :  R  *  R  A  N  T  I  I  T  L  F  S  Y  I  C  R  P  R  S  R  T  T  A  N  G  T  R  T  I  S  E  C  D  Q  P  A  L  S  I   : *  D  H  T  M  W  W  S  S  *  *  *  Y  G  *  C  H  S  C  S  A  S  L  S  *  C  C  *  S  H  K   : G  H  C  Y  V  C  Q  F  S  R  R  V  S  N  S  R :   N  G  C  F  *  Y  H  A  T  Y  S  T  R  C  L  N  C  L  C  W  T  R  C  K  :  Y  G  G  F  S  S  Q  C  W  H  *  R :   E  E  I  *  L  A  K  F  K  D  N  D  S  P  A  S  R  W  C  S  R  W  S  K  *  Y  R  N  T   : G  *  *  D  V  A  S  Q  S  K  F  E  W  L  P  C  L  P  D  W  S  K  P  *  *  D  *  S  G  Y  *  S  *  F  F  H  E  R  K  G  S  *  G  V  R  A  N  R  W  C  H  H  E  S  N  E  S  P  S  T  T  C  S  S  C  *  T  I  V  V  V  L  Q  G  R  L  I  F  Y  L  S  F  C  F  S  L  I  H  S  S  L  E  I  V  I  D  F  T  K  L  G  R  H  N  I  P  A  A  R  K  K  M  Y  A  K  I  F  T  C  W  E  R  V  *  C  T  C  P  D  L  I  *  M  F  P  H  I  S  N  S  L  P  H   </first_frame>
            <second_frame>  M  A  H  S  C  I  A  T  T  S  S  L  S  K  Y  N  S  A  I  F  P  S  D  Y  C  N  I  S  P  I  S  L  Q  F  K  R  L  S  L  S :   V  G  K  V  K  S  R  G  N  S  T  V  K  A  V  Y  S  G  G  D  W  D  L  A  K  A  S  R  S  S  G  I  W  S  I  R :   D  D  V  Q  I  P  S  S  P  Y  F  P  T  Y  A  A  Q  G  Q  G  P  P  P  M  V  Q  E  R  F  Q  S  V  I  S  Q  L  F  Q  Y  :  R  I  I  R  C  G  G  A  V  D  D  D  M  A  N  V  I  V  A  Q  L  L  Y  L  D  A  V  D  P  T  K  :  D  I  V  M  Y  V  N  S  P  G  G  S  V  T  A   : G  M  A  V  F  D  T  M  R  H  I  R  P  D  V  S  T  V  C  V  G  L  A  A  S :   M  G  A  F  L  L  S  A  G  T  K   : G  K  R  Y  S  L  P  N  S  R  I  M  I  H  Q  P  L  G  G  A  Q  G  G  Q  S  D  I  E  I  Q  :  A  N  E  M  L  H  H  K  A  N  L  N  G  Y  L  A  Y  Q  T  G  Q  S  L  D  R  I  N  Q  D  T  D  R  D  F  F  M  S  A  K  E  A  K  E  Y  G  L  I  D  G  V  I  M  N  P  M  K  A  L  Q  P  L  A  A  A  A  E  Q  S  *  L  Y  C  K  E  G  *  F  S  T  Y  H  F  V  S  H  *  Y  T  R  L  *  R  L  *  L  I  L  L  S  W  V  D  T  T  F  L  L  P  G  R  K  C  M  P  K  F  L  L  V  G  K  E  C  N  V  P  A  Q  I  L  Y  R  C  F  L  I  S  A  I  L  Y  P  M  </second_frame>
            <third_frame>   W  L  I  L  A  *  P  Q  L  H  L  S  L  N  T  I  P  Q  F  S  H  L  I  I  A  I  F  L  P  Y  L  Y  S  L  N  V  F  L  *   : V  L  G  K  *  K  V  G  E  I  A  P  S  R  L  C  I  L  E  V  T  G  I  *  Q  R  L  H  V  L  L  E  F  G  L  S   : E  M  T  C  K  Y  H  H  H  L  I  F  L  H  M  P  P  K  V  K  D  H  R  Q  W  Y  K  N  D  F  R  V  *  S  A  S  S  F  N  I :   G  S  Y  D  V  V  E  Q  L  M  M  I  W  L  M  S  *  L  L  S  F  F  I  L  M  L  L  I  P  Q  R :   T  L  L  C  M  S  I  L  Q  E  G  Q  *  Q  Q  :  E  W  L  F  L  I  P  C  D  I  F  D  P  M  S  Q  L  S  V  L  D  S  L  Q   : V  W  G  L  F  F  S  V  L  A  L  K  :  G  R  D  I  A  C  Q  I  Q  G  *  *  F  T  S  L  *  V  V  L  K  V  V  K  V  I  *  K  Y  R :   L  M  R  C  C  I  T  K  Q  I  *  M  V  T  L  P  T  R  L  V  K  A  L  I  G  L  I  R  I  L  I  V  I  F  S  *  A  Q  R  K  L  R  S  T  G  *  S  M  V  S  S  *  I  Q  *  K  P  F  N  H  L  Q  Q  L  L  N  N  R  S  C  I  A  R  K  V  N  F  L  P  I  I  L  F  L  I  N  T  L  V  F  R  D  C  N  *  F  Y  *  V  G  *  T  Q  H  S  C  C  Q  E  E  N  V  C  Q  N  F  Y  L  L  G  K  S  V  M  Y  L  P  R  S  Y  I  D  V  S  S  Y  Q  Q  F  F  T  P  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5408" stop="5290"/>
                    <exon start="5175" stop="5068"/>
                    <exon start="4259" stop="4142"/>
                    <exon start="4037" stop="3945"/>
                    <exon start="3242" stop="3197"/>
                    <exon start="3045" stop="2973"/>
                    <exon start="2188" stop="2154"/>
                    <exon start="2058" stop="1970"/>
                    <exon start="1294" stop="1088"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAHSCIATTSSLSKYNSAIFPSDYCNISPISLQFKRLSLSVGKVKSRGNSTVKAVYSGGDWDLAKASRSSGIWSIRDDVQIPSSPYFPTYAAQGQGPPPMVQERFQSVISQLFQYRIIRCGGAVDDDMANVIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIEIQANEMLHHKANLNGYLAYQTGQSLDRINQDTDRDFFMSAKEAKEYGLIDGVIMNPMKALQPLAAAAEQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="2351" e_stop="1970"/>
            <exon e_start="1294" e_stop="869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.836" e_score="0.997"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="2351" e_stop="1970" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.836">
            <gDNA_intron_boundary i_start="1969" i_stop="1295" i_length="675"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="1294" e_stop="869" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2351" stop="1970"/>
              <exon start="1294" stop="873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2000" stop="1970"/>
              <exon start="1294" stop="873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1291" stop="900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1232" stop="869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1225" stop="900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAAAGTTTTTGTAAATTGAGATTTCATATTCAGTTATAGGTGGAATATATGGAGTTTGTTTTACCTTTAGTACCGTAAGGTGATTAGCTTAGCCTTTTTCTTTTTTCATGGAATAAATAAAGTATCTTGCTTAGCTAATTTATGTTTTGCGGCACTGCAGTATGGGGGCTTTTCTTCTCAGTGCTGGCACTAAAGGTAAGTCGAATAGCTGATTCAAGGCTAAAGTAACTTTCTTTGTCCTATGGTTCTAGTTTTTGCTCTTAACTTTTGAAGTTGTTATCACCTTGAAGGGAAGAGATATAGCTTGCCAAATTCAAGGATAATGATTCACCAGCCTCTAGGTGGTGCTCAAGGTGGTCAAAGTGATATAGAAATACAG : GCTAATGAGATGTTGCATCACAAAGCAAATTTGAATGGTTACCTTGCCTACCAGACTGGTCAAAGCCTTGATAGGATTAATCAGGATACTGATCGTGATTTTTTCATGAGCGCAAAGGAAGCTAAGGAGTACGGGCTAATCGATGGTGTCATCATGAATCCAATGAAAGCCCTTCAACCACTTGCAGCAGCTGCTGAACAATCGTAGTTGTATTGCAAGGAAGGTTAATTTTCTACCTATCATTTTGTTTCTCATTAATACACTCGTCTTTAGAGATTGTAATTGATTTTACTAAGTTGGGTAGACACAACATTCCTGCTGCCAGGAAGAAAATGTATGCCAAAATTTTTACTTGTTGGGAAAGAGTGTAATGTACCTGCCCAGATCTTATATAGATGTTTCCTCATATCAGCAATTCTTTACCCC</gDNA_template>
            <first_frame> Q  K  S  F  C  K  L  R  F  H  I  Q  L  *  V  E  Y  M  E  F  V  L  P  L  V  P  *  G  D  *  L  S  L  F  L  F  S  W  N  K  *  S  I  L  L  S  *  F  M  F  C  G  T  A  V  W  G  L  F  F  S  V  L  A  L  K  V  S  R  I  A  D  S  R  L  K  *  L  S  L  S  Y  G  S  S  F  C  S  *  L  L  K  L  L  S  P  *  R  E  E  I  *  L  A  K  F  K  D  N  D  S  P  A  S  R  W  C  S  R  W  S  K  *  Y  R  N  T   : G  *  *  D  V  A  S  Q  S  K  F  E  W  L  P  C  L  P  D  W  S  K  P  *  *  D  *  S  G  Y  *  S  *  F  F  H  E  R  K  G  S  *  G  V  R  A  N  R  W  C  H  H  E  S  N  E  S  P  S  T  T  C  S  S  C  *  T  I  V  V  V  L  Q  G  R  L  I  F  Y  L  S  F  C  F  S  L  I  H  S  S  L  E  I  V  I  D  F  T  K  L  G  R  H  N  I  P  A  A  R  K  K  M  Y  A  K  I  F  T  C  W  E  R  V  *  C  T  C  P  D  L  I  *  M  F  P  H  I  S  N  S  L  P  </first_frame>
            <second_frame>  K  K  V  F  V  N  *  D  F  I  F  S  Y  R  W  N  I  W  S  L  F  Y  L  *  Y  R  K  V  I  S  L  A  F  F  F  F  H  G  I  N  K  V  S  C  L  A  N  L  C  F  A  A  L  Q  Y  G  G  F  S  S  Q  C  W  H  *  R  *  V  E  *  L  I  Q  G  *  S  N  F  L  C  P  M  V  L  V  F  A  L  N  F  *  S  C  Y  H  L  E  G  K  R  Y  S  L  P  N  S  R  I  M  I  H  Q  P  L  G  G  A  Q  G  G  Q  S  D  I  E  I  Q  :  A  N  E  M  L  H  H  K  A  N  L  N  G  Y  L  A  Y  Q  T  G  Q  S  L  D  R  I  N  Q  D  T  D  R  D  F  F  M  S  A  K  E  A  K  E  Y  G  L  I  D  G  V  I  M  N  P  M  K  A  L  Q  P  L  A  A  A  A  E  Q  S  *  L  Y  C  K  E  G  *  F  S  T  Y  H  F  V  S  H  *  Y  T  R  L  *  R  L  *  L  I  L  L  S  W  V  D  T  T  F  L  L  P  G  R  K  C  M  P  K  F  L  L  V  G  K  E  C  N  V  P  A  Q  I  L  Y  R  C  F  L  I  S  A  I  L  Y  P </second_frame>
            <third_frame>   K  K  F  L  *  I  E  I  S  Y  S  V  I  G  G  I  Y  G  V  C  F  T  F  S  T  V  R  *  L  A  *  P  F  S  F  F  M  E  *  I  K  Y  L  A  *  L  I  Y  V  L  R  H  C  S  M  G  A  F  L  L  S  A  G  T  K  G  K  S  N  S  *  F  K  A  K  V  T  F  F  V  L  W  F  *  F  L  L  L  T  F  E  V  V  I  T  L  K  G  R  D  I  A  C  Q  I  Q  G  *  *  F  T  S  L  *  V  V  L  K  V  V  K  V  I  *  K  Y  R :   L  M  R  C  C  I  T  K  Q  I  *  M  V  T  L  P  T  R  L  V  K  A  L  I  G  L  I  R  I  L  I  V  I  F  S  *  A  Q  R  K  L  R  S  T  G  *  S  M  V  S  S  *  I  Q  *  K  P  F  N  H  L  Q  Q  L  L  N  N  R  S  C  I  A  R  K  V  N  F  L  P  I  I  L  F  L  I  N  T  L  V  F  R  D  C  N  *  F  Y  *  V  G  *  T  Q  H  S  C  C  Q  E  E  N  V  C  Q  N  F  Y  L  L  G  K  S  V  M  Y  L  P  R  S  Y  I  D  V  S  S  Y  Q  Q  F  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2077" stop="1970"/>
                    <exon start="1294" stop="1088"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCYHLEGKRYSLPNSRIMIHQPLGGAQGGQSDIEIQANEMLHHKANLNGYLAYQTGQSLDRINQDTDRDFFMSAKEAKEYGLIDGVIMNPMKALQPLAAAAEQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10767" PGL_stop="7809"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10767" e_stop="10697"/>
            <exon e_start="10534" e_stop="10394"/>
            <exon e_start="9724" e_stop="9581"/>
            <exon e_start="8621" e_stop="8415"/>
            <exon e_start="8142" e_stop="7809"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.932" e_score="0.986"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10767" e_stop="10697" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10696" i_stop="10535" i_length="162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10534" e_stop="10394" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.790" acc_prob="0.998">
            <gDNA_intron_boundary i_start="10393" i_stop="9725" i_length="669"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="9724" e_stop="9581" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.932">
            <gDNA_intron_boundary i_start="9580" i_stop="8622" i_length="959"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8621" e_stop="8415" e_length="207"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8414" i_stop="8143" i_length="272"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="8142" e_stop="7809" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10767" stop="10697"/>
              <exon start="10534" stop="10394"/>
              <exon start="9724" stop="9581"/>
              <exon start="8621" stop="8415"/>
              <exon start="8142" stop="7866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8464" stop="8415"/>
              <exon start="8142" stop="7809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8076" stop="7809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAACAAAATTCTAGAGTGTCATGAGATAATAAAGGACATCTTAGTTAAAAGTTTGTCTAGCATTGCAGAG : GTTGAGGCAGATGACATATTCAAGCAGCTGTCGGAGGATTTCACACCTGATGATACTTTCATTTTTTATCTTAAATCAATGGTTGGCATGGATCACGTCCAAATAGGATCACACTCCAGAGATTCACCTTCGTTTGATGAG : GAATGTTATCCAAGCTCGTTTGTAGAGGATTACAAAGTAAGTGAATCATCAATTGCTGACATCACCAGATTTGTTCCCAGAATTCCTATGTCTCCATCTCCTTCGATGTCTCATGTTGTGAGCATTGGACAGCTTCTTGAGTCG : GCACTCGAGGTGGCTGGTCAAGTAGCTGGTTCATCTGTTTCAACTTCACCTCTTCCATATGACACCATCACTAGTCAATGCGAATCTCTTGGCACAGACTCAAGAAAGAAACTCTCTAATTGGTTAGCTCATGAAAATCATTGTTCAAAAGCAGCTGGTATGGTGTATCCTGCCTGCCCCGCAAATGGTCCATCTGCACTAGCTAAG : ATACTTCAAGAAGATGGACCTGCTAAAGGACCGCCGTTATCAAATGAATCATGGCTAGCACTGAGGCTACCTCCTGCAAGTCCTTTTGATAACTTCCTCAGAGCTGCTAGAGGTTAGATCGATGCACGCTATGCAACTGCACCTTAGGCTGTAAATGACATCACATTGAGCTATTGATCGACTAGTAGGTTTAGCTAACCCTTTTGCTTTAATTCCAACTCTGGAGCTGTCATGCCCCAATTATCAAGTGTTTGTATTTCTAAGGTGTATGTTTGTTGTAGCATTGTTGTAAAGTGCAGTATTACTAAGCTGTATTTAATTCTAACTTATGTTA</gDNA_template>
            <first_frame> G  T  K  F  *  S  V  M  R  *  *  R  T  S  *  L  K  V  C  L  A  L  Q  R :   L  R  Q  M  T  Y  S  S  S  C  R  R  I  S  H  L  M  I  L  S  F  F  I  L  N  Q  W  L  A  W  I  T  S  K  *  D  H  T  P  E  I  H  L  R  L  M  R :   N  V  I  Q  A  R  L  *  R  I  T  K  *  V  N  H  Q  L  L  T  S  P  D  L  F  P  E  F  L  C  L  H  L  L  R  C  L  M  L  *  A  L  D  S  F  L  S  R :   H  S  R  W  L  V  K  *  L  V  H  L  F  Q  L  H  L  F  H  M  T  P  S  L  V  N  A  N  L  L  A  Q  T  Q  E  R  N  S  L  I  G  *  L  M  K  I  I  V  Q  K  Q  L  V  W  C  I  L  P  A  P  Q  M  V  H  L  H  *  L  R :   Y  F  K  K  M  D  L  L  K  D  R  R  Y  Q  M  N  H  G  *  H  *  G  Y  L  L  Q  V  L  L  I  T  S  S  E  L  L  E  V  R  S  M  H  A  M  Q  L  H  L  R  L  *  M  T  S  H  *  A  I  D  R  L  V  G  L  A  N  P  F  A  L  I  P  T  L  E  L  S  C  P  N  Y  Q  V  F  V  F  L  R  C  M  F  V  V  A  L  L  *  S  A  V  L  L  S  C  I  *  F  *  L  M  L </first_frame>
            <second_frame>  E  Q  N  S  R  V  S  *  D  N  K  G  H  L  S  *  K  F  V  *  H  C  R   : G  *  G  R  *  H  I  Q  A  A  V  G  G  F  H  T  *  *  Y  F  H  F  L  S  *  I  N  G  W  H  G  S  R  P  N  R  I  T  L  Q  R  F  T  F  V  *  *   : G  M  L  S  K  L  V  C  R  G  L  Q  S  K  *  I  I  N  C  *  H  H  Q  I  C  S  Q  N  S  Y  V  S  I  S  F  D  V  S  C  C  E  H  W  T  A  S  *  V   : G  T  R  G  G  W  S  S  S  W  F  I  C  F  N  F  T  S  S  I  *  H  H  H  *  S  M  R  I  S  W  H  R  L  K  K  E  T  L  *  L  V  S  S  *  K  S  L  F  K  S  S  W  Y  G  V  S  C  L  P  R  K  W  S  I  C  T  S  *   : D  T  S  R  R  W  T  C  *  R  T  A  V  I  K  *  I  M  A  S  T  E  A  T  S  C  K  S  F  *  *  L  P  Q  S  C  *  R  L  D  R  C  T  L  C  N  C  T  L  G  C  K  *  H  H  I  E  L  L  I  D  *  *  V  *  L  T  L  L  L  *  F  Q  L  W  S  C  H  A  P  I  I  K  C  L  Y  F  *  G  V  C  L  L  *  H  C  C  K  V  Q  Y  Y  *  A  V  F  N  S  N  L  C   </second_frame>
            <third_frame>   N  K  I  L  E  C  H  E  I  I  K  D  I  L  V  K  S  L  S  S  I  A  E  :  V  E  A  D  D  I  F  K  Q  L  S  E  D  F  T  P  D  D  T  F  I  F  Y  L  K  S  M  V  G  M  D  H  V  Q  I  G  S  H  S  R  D  S  P  S  F  D  E  :  E  C  Y  P  S  S  F  V  E  D  Y  K  V  S  E  S  S  I  A  D  I  T  R  F  V  P  R  I  P  M  S  P  S  P  S  M  S  H  V  V  S  I  G  Q  L  L  E  S  :  A  L  E  V  A  G  Q  V  A  G  S  S  V  S  T  S  P  L  P  Y  D  T  I  T  S  Q  C  E  S  L  G  T  D  S  R  K  K  L  S  N  W  L  A  H  E  N  H  C  S  K  A  A  G  M  V  Y  P  A  C  P  A  N  G  P  S  A  L  A  K  :  I  L  Q  E  D  G  P  A  K  G  P  P  L  S  N  E  S  W  L  A  L  R  L  P  P  A  S  P  F  D  N  F  L  R  A  A  R  G  *  I  D  A  R  Y  A  T  A  P  *  A  V  N  D  I  T  L  S  Y  *  S  T  S  R  F  S  *  P  F  C  F  N  S  N  S  G  A  V  M  P  Q  L  S  S  V  C  I  S  K  V  Y  V  C  C  S  I  V  V  K  C  S  I  T  K  L  Y  L  I  L  T  Y  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10765" stop="10697"/>
                    <exon start="10534" stop="10394"/>
                    <exon start="9724" stop="9581"/>
                    <exon start="8621" stop="8415"/>
                    <exon start="8142" stop="8026"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKILECHEIIKDILVKSLSSIAEVEADDIFKQLSEDFTPDDTFIFYLKSMVGMDHVQIGSHSRDSPSFDEECYPSSFVEDYKVSESSIADITRFVPRIPMSPSPSMSHVVSIGQLLESALEVAGQVAGSSVSTSPLPYDTITSQCESLGTDSRKKLSNWLAHENHCSKAAGMVYPACPANGPSALAKILQEDGPAKGPPLSNESWLALRLPPASPFDNFLRAARG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="18456" PGL_stop="10812"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17615" e_stop="17569"/>
            <exon e_start="17214" e_stop="17140"/>
            <exon e_start="17066" e_stop="16951"/>
            <exon e_start="16402" e_stop="16347"/>
            <exon e_start="12207" e_stop="12045"/>
            <exon e_start="11946" e_stop="11776"/>
            <exon e_start="11594" e_stop="11516"/>
            <exon e_start="11435" e_stop="11311"/>
            <exon e_start="10888" e_stop="10812"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.979"/>
          <exon-intron don_prob="0.941" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.999" e_score="0.957"/>
          <exon-intron don_prob="0.000" acc_prob="0.147" e_score="1.000"/>
          <exon-intron don_prob="0.089" acc_prob="0.555" e_score="0.958"/>
          <exon-intron don_prob="0.231" acc_prob="0.956" e_score="0.912"/>
          <exon-intron don_prob="0.851" acc_prob="0.993" e_score="0.949"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.992"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="17615" e_stop="17569" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17568" i_stop="17215" i_length="354"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17214" e_stop="17140" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.941" acc_prob="0.893">
            <gDNA_intron_boundary i_start="17139" i_stop="17067" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="0.957">
            <gDNA_exon_boundary e_start="17066" e_stop="16951" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.700" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16950" i_stop="16403" i_length="548"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16402" e_stop="16347" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.147">
            <gDNA_intron_boundary i_start="16346" i_stop="12208" i_length="4139"/>
          </intron>
          <exon e_serial="5" e_score="0.958">
            <gDNA_exon_boundary e_start="12207" e_stop="12045" e_length="163"/>
          </exon>
          <intron i_serial="5" don_prob="0.089" acc_prob="0.555">
            <gDNA_intron_boundary i_start="12044" i_stop="11947" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.912">
            <gDNA_exon_boundary e_start="11946" e_stop="11776" e_length="171"/>
          </exon>
          <intron i_serial="6" don_prob="0.231" acc_prob="0.956">
            <gDNA_intron_boundary i_start="11775" i_stop="11595" i_length="181"/>
          </intron>
          <exon e_serial="7" e_score="0.949">
            <gDNA_exon_boundary e_start="11594" e_stop="11516" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.851" acc_prob="0.993">
            <gDNA_intron_boundary i_start="11515" i_stop="11436" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="11435" e_stop="11311" e_length="125"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11310" i_stop="10889" i_length="422"/>
          </intron>
          <exon e_serial="9" e_score="0.909">
            <gDNA_exon_boundary e_start="10888" e_stop="10812" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17615" stop="17569"/>
              <exon start="17214" stop="17140"/>
              <exon start="17066" stop="16951"/>
              <exon start="16402" stop="16347"/>
              <exon start="12207" stop="12112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17214" stop="17140"/>
              <exon start="17066" stop="16951"/>
              <exon start="16402" stop="16383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12153" stop="12045"/>
              <exon start="11946" stop="11776"/>
              <exon start="11594" stop="11516"/>
              <exon start="11435" stop="11311"/>
              <exon start="10888" stop="10812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584584" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGCGTTACAAGAAATTGCTAGCTGAAATCTTCCCTAAATCACCA : GATGGCTCGCCTAATGAAAGGAAAATAGTGAAATTATGTGAATATGCAGCGAAAAATCCTTTCAGAATCCCGAAG : ATCGCAAAGTATCTTGAAGAAAGATGCTACAAAGAGCTGCGAAGTGAGCACATCAAATTTATCAACGTAATTGCTGAGGTGTACAATAAGTTGCTTTGCATGTGCAAAGAGCAAAT : GGCATACTTTGCTGCTAGCCTATTAGACATGGTTGTTGAACTGCTGGATGACTCTA : GGAAAGGATGGAATTAAGTTGAAGGAAGGACAAGTTATTCAAGATGACTTGAAGGCGAGAGACAATGTTGATGAGGAACACAAGCAGGGTTGGGCCGTTAAAAATTCACCGAAGTTTCAAAAATTTAGTTCTATGATTGATTGTACAGCTGGCTTGAATGAGG : GATGCTTTTTACTTGATCCAGGAACCATATATTCTGAAGCTAAACAAGGATCAAATTGTCCAGTTGCTGTCAGCCCTCTGGCTACAAGCCAACATGCCAGATAATGTACCTGCAAATGTTGAAGCTATAGTTCAGTCATTTTGCTTGACACTTATTTCTTCACGTGTCAAG : AAAACCAACCATAACTTACTGATACACTTTTGTCAGCTTCCTTTATCACTTATGAAGTTATCCTTAGACCCTAATAATG : GATTGTTTCCTCCAGCATACCAGCGTTCGCTTCTTGTGTTATCAGCTGCCATGTTAGCATTTTTGGCGAAGATTTATCAGATAACTGACCTAAGTGTTATACTTGAAACATTGCGGGATTTTGGT : GTTGATCCTTTTCTGGGTATCAATGATGGTTATCAAGTGTACCTGAAGCCTCACGTAGATGTGAGAAAATATGGTTC</gDNA_template>
            <first_frame> L  S  V  T  R  N  C  *  L  K  S  S  L  N  H  Q :   M  A  R  L  M  K  G  K  *  *  N  Y  V  N  M  Q  R  K  I  L  S  E  S  R  R :   S  Q  S  I  L  K  K  D  A  T  K  S  C  E  V  S  T  S  N  L  S  T  *  L  L  R  C  T  I  S  C  F  A  C  A  K  S  K   : W  H  T  L  L  L  A  Y  *  T  W  L  L  N  C  W  M  T  L  :  G  K  D  G  I  K  L  K  E  G  Q  V  I  Q  D  D  L  K  A  R  D  N  V  D  E  E  H  K  Q  G  W  A  V  K  N  S  P  K  F  Q  K  F  S  S  M  I  D  C  T  A  G  L  N  E   : G  C  F  L  L  D  P  G  T  I  Y  S  E  A  K  Q  G  S  N  C  P  V  A  V  S  P  L  A  T  S  Q  H  A  R  *  C  T  C  K  C  *  S  Y  S  S  V  I  L  L  D  T  Y  F  F  T  C  Q   : E  N  Q  P  *  L  T  D  T  L  L  S  A  S  F  I  T  Y  E  V  I  L  R  P  *  *  W :   I  V  S  S  S  I  P  A  F  A  S  C  V  I  S  C  H  V  S  I  F  G  E  D  L  S  D  N  *  P  K  C  Y  T  *  N  I  A  G  F  W   : C  *  S  F  S  G  Y  Q  *  W  L  S  S  V  P  E  A  S  R  R  C  E  K  I  W  F </first_frame>
            <second_frame>  *  A  L  Q  E  I  A  S  *  N  L  P  *  I  T   : R  W  L  A  *  *  K  E  N  S  E  I  M  *  I  C  S  E  K  S  F  Q  N  P  E   : D  R  K  V  S  *  R  K  M  L  Q  R  A  A  K  *  A  H  Q  I  Y  Q  R  N  C  *  G  V  Q  *  V  A  L  H  V  Q  R  A  N  :  G  I  L  C  C  *  P  I  R  H  G  C  *  T  A  G  *  L  * :   E  R  M  E  L  S  *  R  K  D  K  L  F  K  M  T  *  R  R  E  T  M  L  M  R  N  T  S  R  V  G  P  L  K  I  H  R  S  F  K  N  L  V  L  *  L  I  V  Q  L  A  *  M  R  :  D  A  F  Y  L  I  Q  E  P  Y  I  L  K  L  N  K  D  Q  I  V  Q  L  L  S  A  L  W  L  Q  A  N  M  P  D  N  V  P  A  N  V  E  A  I  V  Q  S  F  C  L  T  L  I  S  S  R  V  K  :  K  T  N  H  N  L  L  I  H  F  C  Q  L  P  L  S  L  M  K  L  S  L  D  P  N  N   : G  L  F  P  P  A  Y  Q  R  S  L  L  V  L  S  A  A  M  L  A  F  L  A  K  I  Y  Q  I  T  D  L  S  V  I  L  E  T  L  R  D  F  G  :  V  D  P  F  L  G  I  N  D  G  Y  Q  V  Y  L  K  P  H  V  D  V  R  K  Y  G   </second_frame>
            <third_frame>   K  R  Y  K  K  L  L  A  E  I  F  P  K  S  P  :  D  G  S  P  N  E  R  K  I  V  K  L  C  E  Y  A  A  K  N  P  F  R  I  P  K  :  I  A  K  Y  L  E  E  R  C  Y  K  E  L  R  S  E  H  I  K  F  I  N  V  I  A  E  V  Y  N  K  L  L  C  M  C  K  E  Q  M :   A  Y  F  A  A  S  L  L  D  M  V  V  E  L  L  D  D  S   : R  K  G  W  N  *  V  E  G  R  T  S  Y  S  R  *  L  E  G  E  R  Q  C  *  *  G  T  Q  A  G  L  G  R  *  K  F  T  E  V  S  K  I  *  F  Y  D  *  L  Y  S  W  L  E  *  G :   M  L  F  T  *  S  R  N  H  I  F  *  S  *  T  R  I  K  L  S  S  C  C  Q  P  S  G  Y  K  P  T  C  Q  I  M  Y  L  Q  M  L  K  L  *  F  S  H  F  A  *  H  L  F  L  H  V  S  R :   K  P  T  I  T  Y  *  Y  T  F  V  S  F  L  Y  H  L  *  S  Y  P  *  T  L  I  M  :  D  C  F  L  Q  H  T  S  V  R  F  L  C  Y  Q  L  P  C  *  H  F  W  R  R  F  I  R  *  L  T  *  V  L  Y  L  K  H  C  G  I  L  V :   L  I  L  F  W  V  S  M  M  V  I  K  C  T  *  S  L  T  *  M  *  E  N  M  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12050" stop="12045"/>
                    <exon start="11946" stop="11776"/>
                    <exon start="11594" stop="11516"/>
                    <exon start="11435" stop="11311"/>
                    <exon start="10888" stop="10814"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRDAFYLIQEPYILKLNKDQIVQLLSALWLQANMPDNVPANVEAIVQSFCLTLISSRVKKTNHNLLIHFCQLPLSLMKLSLDPNNGLFPPAYQRSLLVLSAAMLAFLAKIYQITDLSVILETLRDFGVDPFLGINDGYQVYLKPHVDVRKYG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17613" stop="17569"/>
                    <exon start="17214" stop="17140"/>
                    <exon start="17066" stop="16951"/>
                    <exon start="16402" stop="16347"/>
                    <exon start="12207" stop="12191"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRYKKLLAEIFPKSPDGSPNERKIVKLCEYAAKNPFRIPKIAKYLEERCYKELRSEHIKFINVIAEVYNKLLCMCKEQMAYFAASLLDMVVELLDDSRKGWN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17615" e_stop="17569"/>
            <exon e_start="17214" e_stop="17140"/>
            <exon e_start="17066" e_stop="16951"/>
            <exon e_start="16402" e_stop="16347"/>
            <exon e_start="12207" e_stop="12045"/>
            <exon e_start="11946" e_stop="11776"/>
            <exon e_start="11594" e_stop="11516"/>
            <exon e_start="11435" e_stop="11304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.979"/>
          <exon-intron don_prob="0.941" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.999" e_score="0.957"/>
          <exon-intron don_prob="0.000" acc_prob="0.147" e_score="1.000"/>
          <exon-intron don_prob="0.089" acc_prob="0.555" e_score="0.958"/>
          <exon-intron don_prob="0.231" acc_prob="0.956" e_score="0.901"/>
          <exon-intron don_prob="0.851" acc_prob="0.993" e_score="0.949"/>
          <exon-only e_score="0.886"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="17615" e_stop="17569" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17568" i_stop="17215" i_length="354"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17214" e_stop="17140" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.941" acc_prob="0.893">
            <gDNA_intron_boundary i_start="17139" i_stop="17067" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="0.957">
            <gDNA_exon_boundary e_start="17066" e_stop="16951" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.700" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16950" i_stop="16403" i_length="548"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16402" e_stop="16347" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.147">
            <gDNA_intron_boundary i_start="16346" i_stop="12208" i_length="4139"/>
          </intron>
          <exon e_serial="5" e_score="0.958">
            <gDNA_exon_boundary e_start="12207" e_stop="12045" e_length="163"/>
          </exon>
          <intron i_serial="5" don_prob="0.089" acc_prob="0.555">
            <gDNA_intron_boundary i_start="12044" i_stop="11947" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.901">
            <gDNA_exon_boundary e_start="11946" e_stop="11776" e_length="171"/>
          </exon>
          <intron i_serial="6" don_prob="0.231" acc_prob="0.956">
            <gDNA_intron_boundary i_start="11775" i_stop="11595" i_length="181"/>
          </intron>
          <exon e_serial="7" e_score="0.949">
            <gDNA_exon_boundary e_start="11594" e_stop="11516" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.851" acc_prob="0.993">
            <gDNA_intron_boundary i_start="11515" i_stop="11436" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="0.886">
            <gDNA_exon_boundary e_start="11435" e_stop="11304" e_length="132"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17615" stop="17569"/>
              <exon start="17214" stop="17140"/>
              <exon start="17066" stop="16951"/>
              <exon start="16402" stop="16347"/>
              <exon start="12207" stop="12112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17214" stop="17140"/>
              <exon start="17066" stop="16951"/>
              <exon start="16402" stop="16383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12153" stop="12045"/>
              <exon start="11946" stop="11776"/>
              <exon start="11594" stop="11516"/>
              <exon start="11435" stop="11304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGCGTTACAAGAAATTGCTAGCTGAAATCTTCCCTAAATCACCA : GATGGCTCGCCTAATGAAAGGAAAATAGTGAAATTATGTGAATATGCAGCGAAAAATCCTTTCAGAATCCCGAAG : ATCGCAAAGTATCTTGAAGAAAGATGCTACAAAGAGCTGCGAAGTGAGCACATCAAATTTATCAACGTAATTGCTGAGGTGTACAATAAGTTGCTTTGCATGTGCAAAGAGCAAAT : GGCATACTTTGCTGCTAGCCTATTAGACATGGTTGTTGAACTGCTGGATGACTCTA : GGAAAGGATGGAATTAAGTTGAAGGAAGGACAAGTTATTCAAGATGACTTGAAGGCGAGAGACAATGTTGATGAGGAACACAAGCAGGGTTGGGCCGTTAAAAATTCACCGAAGTTTCAAAAATTTAGTTCTATGATTGATTGTACAGCTGGCTTGAATGAGG : GATGCTTTTTACTTGATCCAGGAACCATATATTCTGAAGCTAAACAAGGATCAAATTGTCCAGTTGCTGTCAGCCCTCTGGCTACAAGCCAACATGCCAGATAATGTACCTGCAAATGTTGAAGCTATAGTTCAGTCATTTTGCTTGACACTTATTTCTTCACGTGTCAAG : AAAACCAACCATAACTTACTGATACACTTTTGTCAGCTTCCTTTATCACTTATGAAGTTATCCTTAGACCCTAATAATG : GATTGTTTCCTCCAGCATACCAGCGTTCGCTTCTTGTGTTATCAGCTGCCATGTTAGCATTTTTGGCGAAGATTTATCAGATAACTGACCTAAGTGTTATACTTGAAACATTGCGGGATTTTGGTGTGAGTA</gDNA_template>
            <first_frame> L  S  V  T  R  N  C  *  L  K  S  S  L  N  H  Q :   M  A  R  L  M  K  G  K  *  *  N  Y  V  N  M  Q  R  K  I  L  S  E  S  R  R :   S  Q  S  I  L  K  K  D  A  T  K  S  C  E  V  S  T  S  N  L  S  T  *  L  L  R  C  T  I  S  C  F  A  C  A  K  S  K   : W  H  T  L  L  L  A  Y  *  T  W  L  L  N  C  W  M  T  L  :  G  K  D  G  I  K  L  K  E  G  Q  V  I  Q  D  D  L  K  A  R  D  N  V  D  E  E  H  K  Q  G  W  A  V  K  N  S  P  K  F  Q  K  F  S  S  M  I  D  C  T  A  G  L  N  E   : G  C  F  L  L  D  P  G  T  I  Y  S  E  A  K  Q  G  S  N  C  P  V  A  V  S  P  L  A  T  S  Q  H  A  R  *  C  T  C  K  C  *  S  Y  S  S  V  I  L  L  D  T  Y  F  F  T  C  Q   : E  N  Q  P  *  L  T  D  T  L  L  S  A  S  F  I  T  Y  E  V  I  L  R  P  *  *  W :   I  V  S  S  S  I  P  A  F  A  S  C  V  I  S  C  H  V  S  I  F  G  E  D  L  S  D  N  *  P  K  C  Y  T  *  N  I  A  G  F  W  C  E   </first_frame>
            <second_frame>  *  A  L  Q  E  I  A  S  *  N  L  P  *  I  T   : R  W  L  A  *  *  K  E  N  S  E  I  M  *  I  C  S  E  K  S  F  Q  N  P  E   : D  R  K  V  S  *  R  K  M  L  Q  R  A  A  K  *  A  H  Q  I  Y  Q  R  N  C  *  G  V  Q  *  V  A  L  H  V  Q  R  A  N  :  G  I  L  C  C  *  P  I  R  H  G  C  *  T  A  G  *  L  * :   E  R  M  E  L  S  *  R  K  D  K  L  F  K  M  T  *  R  R  E  T  M  L  M  R  N  T  S  R  V  G  P  L  K  I  H  R  S  F  K  N  L  V  L  *  L  I  V  Q  L  A  *  M  R  :  D  A  F  Y  L  I  Q  E  P  Y  I  L  K  L  N  K  D  Q  I  V  Q  L  L  S  A  L  W  L  Q  A  N  M  P  D  N  V  P  A  N  V  E  A  I  V  Q  S  F  C  L  T  L  I  S  S  R  V  K  :  K  T  N  H  N  L  L  I  H  F  C  Q  L  P  L  S  L  M  K  L  S  L  D  P  N  N   : G  L  F  P  P  A  Y  Q  R  S  L  L  V  L  S  A  A  M  L  A  F  L  A  K  I  Y  Q  I  T  D  L  S  V  I  L  E  T  L  R  D  F  G  V  S  </second_frame>
            <third_frame>   K  R  Y  K  K  L  L  A  E  I  F  P  K  S  P  :  D  G  S  P  N  E  R  K  I  V  K  L  C  E  Y  A  A  K  N  P  F  R  I  P  K  :  I  A  K  Y  L  E  E  R  C  Y  K  E  L  R  S  E  H  I  K  F  I  N  V  I  A  E  V  Y  N  K  L  L  C  M  C  K  E  Q  M :   A  Y  F  A  A  S  L  L  D  M  V  V  E  L  L  D  D  S   : R  K  G  W  N  *  V  E  G  R  T  S  Y  S  R  *  L  E  G  E  R  Q  C  *  *  G  T  Q  A  G  L  G  R  *  K  F  T  E  V  S  K  I  *  F  Y  D  *  L  Y  S  W  L  E  *  G :   M  L  F  T  *  S  R  N  H  I  F  *  S  *  T  R  I  K  L  S  S  C  C  Q  P  S  G  Y  K  P  T  C  Q  I  M  Y  L  Q  M  L  K  L  *  F  S  H  F  A  *  H  L  F  L  H  V  S  R :   K  P  T  I  T  Y  *  Y  T  F  V  S  F  L  Y  H  L  *  S  Y  P  *  T  L  I  M  :  D  C  F  L  Q  H  T  S  V  R  F  L  C  Y  Q  L  P  C  *  H  F  W  R  R  F  I  R  *  L  T  *  V  L  Y  L  K  H  C  G  I  L  V  *  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12050" stop="12045"/>
                    <exon start="11946" stop="11776"/>
                    <exon start="11594" stop="11516"/>
                    <exon start="11435" stop="11305"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRDAFYLIQEPYILKLNKDQIVQLLSALWLQANMPDNVPANVEAIVQSFCLTLISSRVKKTNHNLLIHFCQLPLSLMKLSLDPNNGLFPPAYQRSLLVLSAAMLAFLAKIYQITDLSVILETLRDFGVS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17613" stop="17569"/>
                    <exon start="17214" stop="17140"/>
                    <exon start="17066" stop="16951"/>
                    <exon start="16402" stop="16347"/>
                    <exon start="12207" stop="12191"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRYKKLLAEIFPKSPDGSPNERKIVKLCEYAAKNPFRIPKIAKYLEERCYKELRSEHIKFINVIAEVYNKLLCMCKEQMAYFAASLLDMVVELLDDSRKGWN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="13136" e_stop="13039"/>
            <exon e_start="12971" e_stop="12822"/>
            <exon e_start="12420" e_stop="12043"/>
            <exon e_start="11925" e_stop="11776"/>
            <exon e_start="11594" e_stop="11516"/>
            <exon e_start="11435" e_stop="11311"/>
            <exon e_start="10888" e_stop="10821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.770" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.734" e_score="0.995"/>
          <exon-intron don_prob="0.231" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13136" e_stop="13039" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.770" acc_prob="0.989">
            <gDNA_intron_boundary i_start="13038" i_stop="12972" i_length="67"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12971" e_stop="12822" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12821" i_stop="12421" i_length="401"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="12420" e_stop="12043" e_length="378"/>
          </exon>
          <intron i_serial="3" don_prob="0.939" acc_prob="0.734">
            <gDNA_intron_boundary i_start="12042" i_stop="11926" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11925" e_stop="11776" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.231" acc_prob="0.956">
            <gDNA_intron_boundary i_start="11775" i_stop="11595" i_length="181"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11594" e_stop="11516" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.851" acc_prob="0.993">
            <gDNA_intron_boundary i_start="11515" i_stop="11436" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11435" e_stop="11311" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11310" i_stop="10889" i_length="422"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="10888" e_stop="10821" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13136" stop="13039"/>
              <exon start="12971" stop="12822"/>
              <exon start="12420" stop="12043"/>
              <exon start="11925" stop="11832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12058" stop="12043"/>
              <exon start="11925" stop="11776"/>
              <exon start="11594" stop="11516"/>
              <exon start="11435" stop="11311"/>
              <exon start="10888" stop="10821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAAGCAACTGTCGAATCAGTTCAAGAGCAAGAGCTTAACTTCAATCTTGCACTTCAAACATCTATCCAAGAATGCTTCCTAGAAACTGCTAAAGGG : ATTGTTGATGCACGACCACTGTTTGATATGATGGCAATGATGCTGGAGAAGTTGCCCTCTCTTAAAGTGGTTGCCAGGGCTACAATGGGATCATTGATCATTCTTGCTCATATGATTTCATTAGCATCTGTTGTTTCACGACGTCAGCAG : GTGTTCCCTGAGGAGCTGTTTGTTCAGCTACTGAAAGTGACATTGCATCCAGACGTTGAAATACGAATTGGAGGACACCACATCTTTTCTGTTCTCCTAATCCCAAGTTCTAATCATATTAGACATGACATAGCCAACCACACAAGGAGATGGAATGCAAACGGCTCATCGACATTTGTGTCAATTACTTCTTTACTTGATAAACTTCGAAAGGGAAAGGATGGAATTAAGTTGAAGGAAGGACAAGTTATTCAAGATGACTTGAAGGCGAGAGACAATGTTGATGAGGAACACAAGCAGGGTTGGGCCGTTAAAAATTCACCGAAGTTTCAAAAATTTAGTTCTATGATTGATTGTACAGCTGGCTTGAATGAGGGT : GAACCATATATTCTGAAGCTAAACAAGGATCAAATTGTCCAGTTGCTGTCAGCCCTCTGGCTACAAGCCAACATGCCAGATAATGTACCTGCAAATGTTGAAGCTATAGTTCAGTCATTTTGCTTGACACTTATTTCTTCACGTGTCAAG : AAAACCAACCATAACTTACTGATACACTTTTGTCAGCTTCCTTTATCACTTATGAAGTTATCCTTAGACCCTAATAATG : GATTGTTTCCTCCAGCATACCAGCGTTCGCTTCTTGTGTTATCAGCTGCCATGTTAGCATTTTTGGCGAAGATTTATCAGATAACTGACCTAAGTGTTATACTTGAAACATTGCGGGATTTTGGT : GTTGATCCTTTTCTGGGTATCAATGATGGTTATCAAGTGTACCTGAAGCCTCACGTAGATGTGAGAAA</gDNA_template>
            <first_frame> F  K  Q  L  S  N  Q  F  K  S  K  S  L  T  S  I  L  H  F  K  H  L  S  K  N  A  S  *  K  L  L  K  G :   L  L  M  H  D  H  C  L  I  *  W  Q  *  C  W  R  S  C  P  L  L  K  W  L  P  G  L  Q  W  D  H  *  S  F  L  L  I  *  F  H  *  H  L  L  F  H  D  V  S  R :   C  S  L  R  S  C  L  F  S  Y  *  K  *  H  C  I  Q  T  L  K  Y  E  L  E  D  T  T  S  F  L  F  S  *  S  Q  V  L  I  I  L  D  M  T  *  P  T  T  Q  G  D  G  M  Q  T  A  H  R  H  L  C  Q  L  L  L  Y  L  I  N  F  E  R  E  R  M  E  L  S  *  R  K  D  K  L  F  K  M  T  *  R  R  E  T  M  L  M  R  N  T  S  R  V  G  P  L  K  I  H  R  S  F  K  N  L  V  L  *  L  I  V  Q  L  A  *  M  R  V :   N  H  I  F  *  S  *  T  R  I  K  L  S  S  C  C  Q  P  S  G  Y  K  P  T  C  Q  I  M  Y  L  Q  M  L  K  L  *  F  S  H  F  A  *  H  L  F  L  H  V  S  R :   K  P  T  I  T  Y  *  Y  T  F  V  S  F  L  Y  H  L  *  S  Y  P  *  T  L  I  M  :  D  C  F  L  Q  H  T  S  V  R  F  L  C  Y  Q  L  P  C  *  H  F  W  R  R  F  I  R  *  L  T  *  V  L  Y  L  K  H  C  G  I  L  V :   L  I  L  F  W  V  S  M  M  V  I  K  C  T  *  S  L  T  *  M  *  E  </first_frame>
            <second_frame>  S  S  N  C  R  I  S  S  R  A  R  A  *  L  Q  S  C  T  S  N  I  Y  P  R  M  L  P  R  N  C  *  R   : D  C  *  C  T  T  T  V  *  Y  D  G  N  D  A  G  E  V  A  L  S  *  S  G  C  Q  G  Y  N  G  I  I  D  H  S  C  S  Y  D  F  I  S  I  C  C  F  T  T  S  A   : G  V  P  *  G  A  V  C  S  A  T  E  S  D  I  A  S  R  R  *  N  T  N  W  R  T  P  H  L  F  C  S  P  N  P  K  F  *  S  Y  *  T  *  H  S  Q  P  H  K  E  M  E  C  K  R  L  I  D  I  C  V  N  Y  F  F  T  *  *  T  S  K  G  K  G  W  N  *  V  E  G  R  T  S  Y  S  R  *  L  E  G  E  R  Q  C  *  *  G  T  Q  A  G  L  G  R  *  K  F  T  E  V  S  K  I  *  F  Y  D  *  L  Y  S  W  L  E  *  G   : *  T  I  Y  S  E  A  K  Q  G  S  N  C  P  V  A  V  S  P  L  A  T  S  Q  H  A  R  *  C  T  C  K  C  *  S  Y  S  S  V  I  L  L  D  T  Y  F  F  T  C  Q   : E  N  Q  P  *  L  T  D  T  L  L  S  A  S  F  I  T  Y  E  V  I  L  R  P  *  *  W :   I  V  S  S  S  I  P  A  F  A  S  C  V  I  S  C  H  V  S  I  F  G  E  D  L  S  D  N  *  P  K  C  Y  T  *  N  I  A  G  F  W   : C  *  S  F  S  G  Y  Q  *  W  L  S  S  V  P  E  A  S  R  R  C  E  K </second_frame>
            <third_frame>   Q  A  T  V  E  S  V  Q  E  Q  E  L  N  F  N  L  A  L  Q  T  S  I  Q  E  C  F  L  E  T  A  K  G  :  I  V  D  A  R  P  L  F  D  M  M  A  M  M  L  E  K  L  P  S  L  K  V  V  A  R  A  T  M  G  S  L  I  I  L  A  H  M  I  S  L  A  S  V  V  S  R  R  Q  Q  :  V  F  P  E  E  L  F  V  Q  L  L  K  V  T  L  H  P  D  V  E  I  R  I  G  G  H  H  I  F  S  V  L  L  I  P  S  S  N  H  I  R  H  D  I  A  N  H  T  R  R  W  N  A  N  G  S  S  T  F  V  S  I  T  S  L  L  D  K  L  R  K  G  K  D  G  I  K  L  K  E  G  Q  V  I  Q  D  D  L  K  A  R  D  N  V  D  E  E  H  K  Q  G  W  A  V  K  N  S  P  K  F  Q  K  F  S  S  M  I  D  C  T  A  G  L  N  E  G  :  E  P  Y  I  L  K  L  N  K  D  Q  I  V  Q  L  L  S  A  L  W  L  Q  A  N  M  P  D  N  V  P  A  N  V  E  A  I  V  Q  S  F  C  L  T  L  I  S  S  R  V  K  :  K  T  N  H  N  L  L  I  H  F  C  Q  L  P  L  S  L  M  K  L  S  L  D  P  N  N   : G  L  F  P  P  A  Y  Q  R  S  L  L  V  L  S  A  A  M  L  A  F  L  A  K  I  Y  Q  I  T  D  L  S  V  I  L  E  T  L  R  D  F  G  :  V  D  P  F  L  G  I  N  D  G  Y  Q  V  Y  L  K  P  H  V  D  V  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13134" stop="13039"/>
                    <exon start="12971" stop="12822"/>
                    <exon start="12420" stop="12043"/>
                    <exon start="11925" stop="11776"/>
                    <exon start="11594" stop="11516"/>
                    <exon start="11435" stop="11311"/>
                    <exon start="10888" stop="10823"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QATVESVQEQELNFNLALQTSIQECFLETAKGIVDARPLFDMMAMMLEKLPSLKVVARATMGSLIILAHMISLASVVSRRQQVFPEELFVQLLKVTLHPDVEIRIGGHHIFSVLLIPSSNHIRHDIANHTRRWNANGSSTFVSITSLLDKLRKGKDGIKLKEGQVIQDDLKARDNVDEEHKQGWAVKNSPKFQKFSSMIDCTAGLNEGEPYILKLNKDQIVQLLSALWLQANMPDNVPANVEAIVQSFCLTLISSRVKKTNHNLLIHFCQLPLSLMKLSLDPNNGLFPPAYQRSLLVLSAAMLAFLAKIYQITDLSVILETLRDFGVDPFLGINDGYQVYLKPHVDVR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="12966" e_stop="12822"/>
            <exon e_start="12420" e_stop="12045"/>
            <exon e_start="11946" e_stop="11776"/>
            <exon e_start="11594" e_stop="11516"/>
            <exon e_start="11435" e_stop="11311"/>
            <exon e_start="10888" e_stop="10812"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.945"/>
          <exon-intron don_prob="0.089" acc_prob="0.555" e_score="0.949"/>
          <exon-intron don_prob="0.231" acc_prob="0.956" e_score="0.912"/>
          <exon-intron don_prob="0.851" acc_prob="0.993" e_score="0.949"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.992"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="12966" e_stop="12822" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12821" i_stop="12421" i_length="401"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="12420" e_stop="12045" e_length="376"/>
          </exon>
          <intron i_serial="2" don_prob="0.089" acc_prob="0.555">
            <gDNA_intron_boundary i_start="12044" i_stop="11947" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="0.912">
            <gDNA_exon_boundary e_start="11946" e_stop="11776" e_length="171"/>
          </exon>
          <intron i_serial="3" don_prob="0.231" acc_prob="0.956">
            <gDNA_intron_boundary i_start="11775" i_stop="11595" i_length="181"/>
          </intron>
          <exon e_serial="4" e_score="0.949">
            <gDNA_exon_boundary e_start="11594" e_stop="11516" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.851" acc_prob="0.993">
            <gDNA_intron_boundary i_start="11515" i_stop="11436" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="11435" e_stop="11311" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11310" i_stop="10889" i_length="422"/>
          </intron>
          <exon e_serial="6" e_score="0.909">
            <gDNA_exon_boundary e_start="10888" e_stop="10812" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12966" stop="12822"/>
              <exon start="12420" stop="12045"/>
              <exon start="11946" stop="11776"/>
              <exon start="11594" stop="11516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12153" stop="12045"/>
              <exon start="11946" stop="11776"/>
              <exon start="11594" stop="11516"/>
              <exon start="11435" stop="11311"/>
              <exon start="10888" stop="10812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584584" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGCACGACCACTGTTTGATATGATGGCAATGATGCTGGAGAAGTTGCCCTCTCTTAAAGTGGTTGCCAGGGCTACAATGGGATCATTGATCATTCTTGCTCATATGATTTCATTAGCATCTGTTGTTTCACGACGTCAGCAG : GTGTTCCCTGAGGAGCTGTTTGTTCAGCTACTGAAAGTGACATTGCATCCAGACGTTGAAATACGAATTGGAGGACACCACATCTTTTCTGTTCTCCTAATCCCAAGTTCTAATCATATTAGACATGACATAGCCAACCACACAAGGAGATGGAATGCAAACGGCTCATCGACATTTGTGTCAATTACTTCTTTACTTGATAAACTTCGAAAGGGAAAGGATGGAATTAAGTTGAAGGAAGGACAAGTTATTCAAGATGACTTGAAGGCGAGAGACAATGTTGATGAGGAACACAAGCAGGGTTGGGCCGTTAAAAATTCACCGAAGTTTCAAAAATTTAGTTCTATGATTGATTGTACAGCTGGCTTGAATGAGG : GATGCTTTTTACTTGATCCAGGAACCATATATTCTGAAGCTAAACAAGGATCAAATTGTCCAGTTGCTGTCAGCCCTCTGGCTACAAGCCAACATGCCAGATAATGTACCTGCAAATGTTGAAGCTATAGTTCAGTCATTTTGCTTGACACTTATTTCTTCACGTGTCAAG : AAAACCAACCATAACTTACTGATACACTTTTGTCAGCTTCCTTTATCACTTATGAAGTTATCCTTAGACCCTAATAATG : GATTGTTTCCTCCAGCATACCAGCGTTCGCTTCTTGTGTTATCAGCTGCCATGTTAGCATTTTTGGCGAAGATTTATCAGATAACTGACCTAAGTGTTATACTTGAAACATTGCGGGATTTTGGT : GTTGATCCTTTTCTGGGTATCAATGATGGTTATCAAGTGTACCTGAAGCCTCACGTAGATGTGAGAAAATATGGTTC</gDNA_template>
            <first_frame> *  C  T  T  T  V  *  Y  D  G  N  D  A  G  E  V  A  L  S  *  S  G  C  Q  G  Y  N  G  I  I  D  H  S  C  S  Y  D  F  I  S  I  C  C  F  T  T  S  A   : G  V  P  *  G  A  V  C  S  A  T  E  S  D  I  A  S  R  R  *  N  T  N  W  R  T  P  H  L  F  C  S  P  N  P  K  F  *  S  Y  *  T  *  H  S  Q  P  H  K  E  M  E  C  K  R  L  I  D  I  C  V  N  Y  F  F  T  *  *  T  S  K  G  K  G  W  N  *  V  E  G  R  T  S  Y  S  R  *  L  E  G  E  R  Q  C  *  *  G  T  Q  A  G  L  G  R  *  K  F  T  E  V  S  K  I  *  F  Y  D  *  L  Y  S  W  L  E  *  G :   M  L  F  T  *  S  R  N  H  I  F  *  S  *  T  R  I  K  L  S  S  C  C  Q  P  S  G  Y  K  P  T  C  Q  I  M  Y  L  Q  M  L  K  L  *  F  S  H  F  A  *  H  L  F  L  H  V  S  R :   K  P  T  I  T  Y  *  Y  T  F  V  S  F  L  Y  H  L  *  S  Y  P  *  T  L  I  M  :  D  C  F  L  Q  H  T  S  V  R  F  L  C  Y  Q  L  P  C  *  H  F  W  R  R  F  I  R  *  L  T  *  V  L  Y  L  K  H  C  G  I  L  V :   L  I  L  F  W  V  S  M  M  V  I  K  C  T  *  S  L  T  *  M  *  E  N  M  V  </first_frame>
            <second_frame>  D  A  R  P  L  F  D  M  M  A  M  M  L  E  K  L  P  S  L  K  V  V  A  R  A  T  M  G  S  L  I  I  L  A  H  M  I  S  L  A  S  V  V  S  R  R  Q  Q  :  V  F  P  E  E  L  F  V  Q  L  L  K  V  T  L  H  P  D  V  E  I  R  I  G  G  H  H  I  F  S  V  L  L  I  P  S  S  N  H  I  R  H  D  I  A  N  H  T  R  R  W  N  A  N  G  S  S  T  F  V  S  I  T  S  L  L  D  K  L  R  K  G  K  D  G  I  K  L  K  E  G  Q  V  I  Q  D  D  L  K  A  R  D  N  V  D  E  E  H  K  Q  G  W  A  V  K  N  S  P  K  F  Q  K  F  S  S  M  I  D  C  T  A  G  L  N  E   : G  C  F  L  L  D  P  G  T  I  Y  S  E  A  K  Q  G  S  N  C  P  V  A  V  S  P  L  A  T  S  Q  H  A  R  *  C  T  C  K  C  *  S  Y  S  S  V  I  L  L  D  T  Y  F  F  T  C  Q   : E  N  Q  P  *  L  T  D  T  L  L  S  A  S  F  I  T  Y  E  V  I  L  R  P  *  *  W :   I  V  S  S  S  I  P  A  F  A  S  C  V  I  S  C  H  V  S  I  F  G  E  D  L  S  D  N  *  P  K  C  Y  T  *  N  I  A  G  F  W   : C  *  S  F  S  G  Y  Q  *  W  L  S  S  V  P  E  A  S  R  R  C  E  K  I  W  F </second_frame>
            <third_frame>   M  H  D  H  C  L  I  *  W  Q  *  C  W  R  S  C  P  L  L  K  W  L  P  G  L  Q  W  D  H  *  S  F  L  L  I  *  F  H  *  H  L  L  F  H  D  V  S  R :   C  S  L  R  S  C  L  F  S  Y  *  K  *  H  C  I  Q  T  L  K  Y  E  L  E  D  T  T  S  F  L  F  S  *  S  Q  V  L  I  I  L  D  M  T  *  P  T  T  Q  G  D  G  M  Q  T  A  H  R  H  L  C  Q  L  L  L  Y  L  I  N  F  E  R  E  R  M  E  L  S  *  R  K  D  K  L  F  K  M  T  *  R  R  E  T  M  L  M  R  N  T  S  R  V  G  P  L  K  I  H  R  S  F  K  N  L  V  L  *  L  I  V  Q  L  A  *  M  R  :  D  A  F  Y  L  I  Q  E  P  Y  I  L  K  L  N  K  D  Q  I  V  Q  L  L  S  A  L  W  L  Q  A  N  M  P  D  N  V  P  A  N  V  E  A  I  V  Q  S  F  C  L  T  L  I  S  S  R  V  K  :  K  T  N  H  N  L  L  I  H  F  C  Q  L  P  L  S  L  M  K  L  S  L  D  P  N  N   : G  L  F  P  P  A  Y  Q  R  S  L  L  V  L  S  A  A  M  L  A  F  L  A  K  I  Y  Q  I  T  D  L  S  V  I  L  E  T  L  R  D  F  G  :  V  D  P  F  L  G  I  N  D  G  Y  Q  V  Y  L  K  P  H  V  D  V  R  K  Y  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12965" stop="12822"/>
                    <exon start="12420" stop="12045"/>
                    <exon start="11946" stop="11843"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DARPLFDMMAMMLEKLPSLKVVARATMGSLIILAHMISLASVVSRRQQVFPEELFVQLLKVTLHPDVEIRIGGHHIFSVLLIPSSNHIRHDIANHTRRWNANGSSTFVSITSLLDKLRKGKDGIKLKEGQVIQDDLKARDNVDEEHKQGWAVKNSPKFQKFSSMIDCTAGLNEGCFLLDPGTIYSEAKQGSNCPVAVSPLATSQHAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="18456" e_stop="18302"/>
            <exon e_start="17707" e_stop="17569"/>
            <exon e_start="17214" e_stop="17140"/>
            <exon e_start="17066" e_stop="16951"/>
            <exon e_start="16402" e_stop="16288"/>
            <exon e_start="15629" e_stop="15501"/>
            <exon e_start="15365" e_stop="15331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.926" e_score="0.981"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.832" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.686" acc_prob="0.826" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="18456" e_stop="18302" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.926">
            <gDNA_intron_boundary i_start="18301" i_stop="17708" i_length="594"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17707" e_stop="17569" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17568" i_stop="17215" i_length="354"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17214" e_stop="17140" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.941" acc_prob="0.893">
            <gDNA_intron_boundary i_start="17139" i_stop="17067" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17066" e_stop="16951" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="0.700" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16950" i_stop="16403" i_length="548"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16402" e_stop="16288" e_length="115"/>
          </exon>
          <intron i_serial="5" don_prob="0.832" acc_prob="0.976">
            <gDNA_intron_boundary i_start="16287" i_stop="15630" i_length="658"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15629" e_stop="15501" e_length="129"/>
          </exon>
          <intron i_serial="6" don_prob="0.686" acc_prob="0.826">
            <gDNA_intron_boundary i_start="15500" i_stop="15366" i_length="135"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="15365" e_stop="15331" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18456" stop="18302"/>
              <exon start="17707" stop="17569"/>
              <exon start="17214" stop="17140"/>
              <exon start="17066" stop="16951"/>
              <exon start="16402" stop="16288"/>
              <exon start="15629" stop="15501"/>
              <exon start="15365" stop="15331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17214" stop="17140"/>
              <exon start="17066" stop="16951"/>
              <exon start="16402" stop="16383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399934" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGATTTCTTCCTTAAAATTCACGCGCTTACTTTGTTCTTGTCTGGTTTCTTGACTTCCCATTTGCTCTTTCTATCAAAGTTCAAACCTTTGTTGGAGTTCTTGAAACCCCTTTTCACTGGGAGTTCCAAGATCTTCTTCTGTAGTTGAAGAAG : GAAAATGGGATTTATTTCACGGAAGTTATTCCCTGCATGTGGGAACATGTGCATTTGCTGTCCTGCTATGAGGTCTCGATCTCGACAACCCGTTAAGCGTTACAAGAAATTGCTAGCTGAAATCTTCCCTAAATCACCA : GATGGCTCGCCTAATGAAAGGAAAATAGTGAAATTATGTGAATATGCAGCGAAAAATCCTTTCAGAATCCCGAAG : ATCGCAAAGTATCTTGAAGAAAGATGCTACAAAGAGCTGCGAAGTGAGCACATCAAATTTATCAACGTAATTGCTGAGGTGTACAATAAGTTGCTTTGCATGTGCAAAGAGCAAAT : GGCATACTTTGCTGCTAGCCTATTAGACATGGTTGTTGAACTGCTGGATGACTCTAAGAAAGATGCTGTCAGGATTACTGGTTGCCAGACCCTGACCAGGTTTATTTATAGTCAG : GTAGATGGAACATACACATATAACATTGAAACTTTGGTTCCCAAAGTATGTTCATTGGCACGGGAGACTGGTGAAGAACATGAAAAACGCAGCTTGAGGGCATCAAGTTTGCAGTGTCTTTCTGCCATG : GTTTGGTTCATGGCTGAGTTCTCTCATATATTTGT</gDNA_template>
            <first_frame> *  D  F  F  L  K  I  H  A  L  T  L  F  L  S  G  F  L  T  S  H  L  L  F  L  S  K  F  K  P  L  L  E  F  L  K  P  L  F  T  G  S  S  K  I  F  F  C  S  *  R  R :   K  M  G  F  I  S  R  K  L  F  P  A  C  G  N  M  C  I  C  C  P  A  M  R  S  R  S  R  Q  P  V  K  R  Y  K  K  L  L  A  E  I  F  P  K  S  P  :  D  G  S  P  N  E  R  K  I  V  K  L  C  E  Y  A  A  K  N  P  F  R  I  P  K  :  I  A  K  Y  L  E  E  R  C  Y  K  E  L  R  S  E  H  I  K  F  I  N  V  I  A  E  V  Y  N  K  L  L  C  M  C  K  E  Q  M :   A  Y  F  A  A  S  L  L  D  M  V  V  E  L  L  D  D  S  K  K  D  A  V  R  I  T  G  C  Q  T  L  T  R  F  I  Y  S  Q  :  V  D  G  T  Y  T  Y  N  I  E  T  L  V  P  K  V  C  S  L  A  R  E  T  G  E  E  H  E  K  R  S  L  R  A  S  S  L  Q  C  L  S  A  M  :  V  W  F  M  A  E  F  S  H  I  F   </first_frame>
            <second_frame>  K  I  S  S  L  K  F  T  R  L  L  C  S  C  L  V  S  *  L  P  I  C  S  F  Y  Q  S  S  N  L  C  W  S  S  *  N  P  F  S  L  G  V  P  R  S  S  S  V  V  E  E   : G  K  W  D  L  F  H  G  S  Y  S  L  H  V  G  T  C  A  F  A  V  L  L  *  G  L  D  L  D  N  P  L  S  V  T  R  N  C  *  L  K  S  S  L  N  H  Q :   M  A  R  L  M  K  G  K  *  *  N  Y  V  N  M  Q  R  K  I  L  S  E  S  R  R :   S  Q  S  I  L  K  K  D  A  T  K  S  C  E  V  S  T  S  N  L  S  T  *  L  L  R  C  T  I  S  C  F  A  C  A  K  S  K   : W  H  T  L  L  L  A  Y  *  T  W  L  L  N  C  W  M  T  L  R  K  M  L  S  G  L  L  V  A  R  P  *  P  G  L  F  I  V  R :   *  M  E  H  T  H  I  T  L  K  L  W  F  P  K  Y  V  H  W  H  G  R  L  V  K  N  M  K  N  A  A  *  G  H  Q  V  C  S  V  F  L  P  W :   F  G  S  W  L  S  S  L  I  Y  L  </second_frame>
            <third_frame>   R  F  L  P  *  N  S  R  A  Y  F  V  L  V  W  F  L  D  F  P  F  A  L  S  I  K  V  Q  T  F  V  G  V  L  E  T  P  F  H  W  E  F  Q  D  L  L  L  *  L  K  K  :  E  N  G  I  Y  F  T  E  V  I  P  C  M  W  E  H  V  H  L  L  S  C  Y  E  V  S  I  S  T  T  R  *  A  L  Q  E  I  A  S  *  N  L  P  *  I  T   : R  W  L  A  *  *  K  E  N  S  E  I  M  *  I  C  S  E  K  S  F  Q  N  P  E   : D  R  K  V  S  *  R  K  M  L  Q  R  A  A  K  *  A  H  Q  I  Y  Q  R  N  C  *  G  V  Q  *  V  A  L  H  V  Q  R  A  N  :  G  I  L  C  C  *  P  I  R  H  G  C  *  T  A  G  *  L  *  E  R  C  C  Q  D  Y  W  L  P  D  P  D  Q  V  Y  L  *  S   : G  R  W  N  I  H  I  *  H  *  N  F  G  S  Q  S  M  F  I  G  T  G  D  W  *  R  T  *  K  T  Q  L  E  G  I  K  F  A  V  S  F  C  H   : G  L  V  H  G  *  V  L  S  Y  I  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18306" stop="18302"/>
                    <exon start="17707" stop="17569"/>
                    <exon start="17214" stop="17140"/>
                    <exon start="17066" stop="16951"/>
                    <exon start="16402" stop="16288"/>
                    <exon start="15629" stop="15501"/>
                    <exon start="15365" stop="15333"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRKMGFISRKLFPACGNMCICCPAMRSRSRQPVKRYKKLLAEIFPKSPDGSPNERKIVKLCEYAAKNPFRIPKIAKYLEERCYKELRSEHIKFINVIAEVYNKLLCMCKEQMAYFAASLLDMVVELLDDSKKDAVRITGCQTLTRFIYSQVDGTYTYNIETLVPKVCSLARETGEEHEKRSLRASSLQCLSAMVWFMAEFSHIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="22452" PGL_stop="21779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22452" e_stop="21779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="22452" e_stop="21779" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22452" stop="21779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395473" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATACAGAGACTCCAAATCAAAACTGCCTCTCTGCAGTCTCCAGTGCTACAAGGCAATACGTGAGAAGATTCAACATCTAAGTGCTTGCTGAACAGAGCTCTCACAGCCCTGATACTAATGGGCACTTGGACTTTATTTGTAGAGATTCATGTGGGAACTGCAAAGAAATGGTTGTGTTCCATATCATCATTGTGCCTATGCCCCGTTTACCAAGAATTCTAGTATGTGTAGAGTAGCTTCATAAAGCTACTAAATATCTCATAACAGAGTCTTTTGTCCGACTCAATTGAAAGTGGGATGAATCACACATAATCTACGGTGCACCTTCTGAATAGAAATGCTCTAAGAATTTGTGCTTGGAAGAGTGAACAAAAGTATAAGAAGAAACCTTTCTCGGTCACCTCTACAACCAATAAGATCAGGCTGAACATGGATGGAATTGCTGAGGGTGATCTCGACGATCCATTATTTGGTGACATTGTCCATAGCAGAGGTGGCGGATGTGGGTACATAGGGATAATTGGTATTCGGAACAGTCATGCTGCTGAGCTATGGAACTCAAGGATGAAAGTTTTTATCTAAACGTTTTGAAGTGGAATGTCTGTCTAAGCTGTAATGATGTGCTGAATATTACTCCGTTTGATTAAGTGCCTATATTCAATATTGTCACTC</gDNA_template>
            <first_frame> K  Y  R  D  S  K  S  K  L  P  L  C  S  L  Q  C  Y  K  A  I  R  E  K  I  Q  H  L  S  A  C  *  T  E  L  S  Q  P  *  Y  *  W  A  L  G  L  Y  L  *  R  F  M  W  E  L  Q  R  N  G  C  V  P  Y  H  H  C  A  Y  A  P  F  T  K  N  S  S  M  C  R  V  A  S  *  S  Y  *  I  S  H  N  R  V  F  C  P  T  Q  L  K  V  G  *  I  T  H  N  L  R  C  T  F  *  I  E  M  L  *  E  F  V  L  G  R  V  N  K  S  I  R  R  N  L  S  R  S  P  L  Q  P  I  R  S  G  *  T  W  M  E  L  L  R  V  I  S  T  I  H  Y  L  V  T  L  S  I  A  E  V  A  D  V  G  T  *  G  *  L  V  F  G  T  V  M  L  L  S  Y  G  T  Q  G  *  K  F  L  S  K  R  F  E  V  E  C  L  S  K  L  *  *  C  A  E  Y  Y  S  V  *  L  S  A  Y  I  Q  Y  C  H   </first_frame>
            <second_frame>  N  T  E  T  P  N  Q  N  C  L  S  A  V  S  S  A  T  R  Q  Y  V  R  R  F  N  I  *  V  L  A  E  Q  S  S  H  S  P  D  T  N  G  H  L  D  F  I  C  R  D  S  C  G  N  C  K  E  M  V  V  F  H  I  I  I  V  P  M  P  R  L  P  R  I  L  V  C  V  E  *  L  H  K  A  T  K  Y  L  I  T  E  S  F  V  R  L  N  *  K  W  D  E  S  H  I  I  Y  G  A  P  S  E  *  K  C  S  K  N  L  C  L  E  E  *  T  K  V  *  E  E  T  F  L  G  H  L  Y  N  Q  *  D  Q  A  E  H  G  W  N  C  *  G  *  S  R  R  S  I  I  W  *  H  C  P  *  Q  R  W  R  M  W  V  H  R  D  N  W  Y  S  E  Q  S  C  C  *  A  M  E  L  K  D  E  S  F  Y  L  N  V  L  K  W  N  V  C  L  S  C  N  D  V  L  N  I  T  P  F  D  *  V  P  I  F  N  I  V  T  </second_frame>
            <third_frame>   I  Q  R  L  Q  I  K  T  A  S  L  Q  S  P  V  L  Q  G  N  T  *  E  D  S  T  S  K  C  L  L  N  R  A  L  T  A  L  I  L  M  G  T  W  T  L  F  V  E  I  H  V  G  T  A  K  K  W  L  C  S  I  S  S  L  C  L  C  P  V  Y  Q  E  F  *  Y  V  *  S  S  F  I  K  L  L  N  I  S  *  Q  S  L  L  S  D  S  I  E  S  G  M  N  H  T  *  S  T  V  H  L  L  N  R  N  A  L  R  I  C  A  W  K  S  E  Q  K  Y  K  K  K  P  F  S  V  T  S  T  T  N  K  I  R  L  N  M  D  G  I  A  E  G  D  L  D  D  P  L  F  G  D  I  V  H  S  R  G  G  G  C  G  Y  I  G  I  I  G  I  R  N  S  H  A  A  E  L  W  N  S  R  M  K  V  F  I  *  T  F  *  S  G  M  S  V  *  A  V  M  M  C  *  I  L  L  R  L  I  K  C  L  Y  S  I  L  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22138" stop="21869"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STVHLLNRNALRICAWKSEQKYKKKPFSVTSTTNKIRLNMDGIAEGDLDDPLFGDIVHSRGGGCGYIGIIGIRNSHAAELWNSRMKVFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="25458" PGL_stop="22729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25458" e_stop="24832"/>
            <exon e_start="24390" e_stop="23715"/>
            <exon e_start="23639" e_stop="23539"/>
            <exon e_start="23433" e_stop="23344"/>
            <exon e_start="22783" e_stop="22729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.931" acc_prob="0.787" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="0.929" e_score="0.996"/>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="25458" e_stop="24832" e_length="627"/>
          </exon>
          <intron i_serial="1" don_prob="0.931" acc_prob="0.787">
            <gDNA_intron_boundary i_start="24831" i_stop="24391" i_length="441"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="24390" e_stop="23715" e_length="676"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.929">
            <gDNA_intron_boundary i_start="23714" i_stop="23640" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23639" e_stop="23539" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="23538" i_stop="23434" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23433" e_stop="23344" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="23343" i_stop="22784" i_length="560"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22783" e_stop="22729" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25458" stop="24832"/>
              <exon start="24390" stop="24137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24294" stop="23754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24294" stop="23835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24293" stop="23848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24293" stop="23879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24056" stop="23715"/>
              <exon start="23639" stop="23539"/>
              <exon start="23433" stop="23344"/>
              <exon start="22783" stop="22729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAAACAGAGAACTGATCTATATCGGCGGCCTCAAAAGGAGTCTCAGTTGAATTTAAATTGTCGTGATAATTCATCCATTTCATCAGCACCACCATCTGATAGTTTGAGCAAATCATCTAGTTGTGATAATGCTGATTATGGTAATATTTCAAGAACATCTTATAGTAACCTCATTGAAGCTGAGGCTGCCGGTGAGTTTGGTGTCGAAGGTGGGAACTCTGGGTACTCCTGTTCCAGTGATACCGAGCAAAAGCATGGTCAGATAGATATGAGTAGATTTAGTGAAGGAGACCAAGCAACATCTCGGGTAGAGGATCCCAAAAGTGGAACTGTGATGTGCAGTAATCATTCTGGAATGCCAGGAGTAGTATCAGATGGAGCTGGGAATGACACCAAAGTCAAGAAAGTGAAACTCAAAGTTGGTGGTGTTACAAAAACAATAAACACTTCTGTCGCTGGATCCTCTTCAGATGCCCCTCAGAAATGGCAACCCAAGGTCATTATTTATTTTCCTGTTGTGATGGCTCCTTTATACACATTTGCTTTATGAAACTTAAGATGTGCATCATACTGATTGGGGATGCACCTTGGTTTAACGCTAAAGAAATGGTGCAGCATACAATAG : CAGAATACAGGTGGACATCATTCCTCTTATAGTGGAAGGGCAATTGGCTTGCGAGGTATCCCCTGGAAGGATTTTGCTAAAACTGGTTTTGGTGTTAGGAAAGTGGATTCCTCGACGGATCAGTTACCTGGGCAGTTTGCCCCTTTGAAACAATTAGAAAAATATGAGGCATCTCATAAAAGCAAGTCTCTGCTAAAAAGACATTTATCAGGTGAAACATTTGATGATGAAGACACTGAGGATGATGATGATGATGAGATCCGTTTCCTGGAGAAGCTCAGGTCTTCCAAATATTCTGCGTGTTATAGTGCTGGCTATGAGGATGATGATGAAGTTGGATGTAGAAAAAAGCGGAAGATATCAAGGGTGTTAAGTCAAAGTAGCAAAGTTTATAGTGCAGATCTGAGTTATTACGATTCGCTTAAAGCAGTTAAAGGGATTGAGAAATCCAAATCTGAAAGAGCATCTCAGGGTTCGGACTATGAAGAGGTGGTGGTTTCTGATACTGAGTTAGTACCGAAGAAGAAGAAAAAACTAAAGGAATTAGCTGATATCTCAGTAGTTGAAAGGAGAAAAATGGCCGTGACTACTCGCCAGCAGGCACTTCAATCTGGAAAAGATATTTCTTGCAGTGCAGTTGAGTTTCCCCATAGACTTCCACCTGCACCACCTAAAA : AACAAAAGGAGAAGCTCTCTGAAGTGGAGCAGCAGTTGAAGAAAGCTGAGGCTGCGCAAAGACGCAGGATGCAAGCTGAAAAGGCTGCTCGAGAGTCGGAG : GCTGAAGCAATAAGGAAAATCCTAAGTCAAGATTCTAGTAGGAAAAAGCGAGAAGATAAAATTAAGAAGCGTCAAGAGGAGTTAGCACAG : GAAAGAACTGGAGCAGCTTCTTCACTATCATCAAATGCTATCAGATGGGTTATGG</gDNA_template>
            <first_frame> R  K  Q  R  T  D  L  Y  R  R  P  Q  K  E  S  Q  L  N  L  N  C  R  D  N  S  S  I  S  S  A  P  P  S  D  S  L  S  K  S  S  S  C  D  N  A  D  Y  G  N  I  S  R  T  S  Y  S  N  L  I  E  A  E  A  A  G  E  F  G  V  E  G  G  N  S  G  Y  S  C  S  S  D  T  E  Q  K  H  G  Q  I  D  M  S  R  F  S  E  G  D  Q  A  T  S  R  V  E  D  P  K  S  G  T  V  M  C  S  N  H  S  G  M  P  G  V  V  S  D  G  A  G  N  D  T  K  V  K  K  V  K  L  K  V  G  G  V  T  K  T  I  N  T  S  V  A  G  S  S  S  D  A  P  Q  K  W  Q  P  K  V  I  I  Y  F  P  V  V  M  A  P  L  Y  T  F  A  L  *  N  L  R  C  A  S  Y  *  L  G  M  H  L  G  L  T  L  K  K  W  C  S  I  Q  *  :  Q  N  T  G  G  H  H  S  S  Y  S  G  R  A  I  G  L  R  G  I  P  W  K  D  F  A  K  T  G  F  G  V  R  K  V  D  S  S  T  D  Q  L  P  G  Q  F  A  P  L  K  Q  L  E  K  Y  E  A  S  H  K  S  K  S  L  L  K  R  H  L  S  G  E  T  F  D  D  E  D  T  E  D  D  D  D  D  E  I  R  F  L  E  K  L  R  S  S  K  Y  S  A  C  Y  S  A  G  Y  E  D  D  D  E  V  G  C  R  K  K  R  K  I  S  R  V  L  S  Q  S  S  K  V  Y  S  A  D  L  S  Y  Y  D  S  L  K  A  V  K  G  I  E  K  S  K  S  E  R  A  S  Q  G  S  D  Y  E  E  V  V  V  S  D  T  E  L  V  P  K  K  K  K  K  L  K  E  L  A  D  I  S  V  V  E  R  R  K  M  A  V  T  T  R  Q  Q  A  L  Q  S  G  K  D  I  S  C  S  A  V  E  F  P  H  R  L  P  P  A  P  P  K   : K  Q  K  E  K  L  S  E  V  E  Q  Q  L  K  K  A  E  A  A  Q  R  R  R  M  Q  A  E  K  A  A  R  E  S  E  :  A  E  A  I  R  K  I  L  S  Q  D  S  S  R  K  K  R  E  D  K  I  K  K  R  Q  E  E  L  A  Q  :  E  R  T  G  A  A  S  S  L  S  S  N  A  I  R  W  V  M  </first_frame>
            <second_frame>  G  N  R  E  L  I  Y  I  G  G  L  K  R  S  L  S  *  I  *  I  V  V  I  I  H  P  F  H  Q  H  H  H  L  I  V  *  A  N  H  L  V  V  I  M  L  I  M  V  I  F  Q  E  H  L  I  V  T  S  L  K  L  R  L  P  V  S  L  V  S  K  V  G  T  L  G  T  P  V  P  V  I  P  S  K  S  M  V  R  *  I  *  V  D  L  V  K  E  T  K  Q  H  L  G  *  R  I  P  K  V  E  L  *  C  A  V  I  I  L  E  C  Q  E  *  Y  Q  M  E  L  G  M  T  P  K  S  R  K  *  N  S  K  L  V  V  L  Q  K  Q  *  T  L  L  S  L  D  P  L  Q  M  P  L  R  N  G  N  P  R  S  L  F  I  F  L  L  *  W  L  L  Y  T  H  L  L  Y  E  T  *  D  V  H  H  T  D  W  G  C  T  L  V  *  R  *  R  N  G  A  A  Y  N  S :   R  I  Q  V  D  I  I  P  L  I  V  E  G  Q  L  A  C  E  V  S  P  G  R  I  L  L  K  L  V  L  V  L  G  K  W  I  P  R  R  I  S  Y  L  G  S  L  P  L  *  N  N  *  K  N  M  R  H  L  I  K  A  S  L  C  *  K  D  I  Y  Q  V  K  H  L  M  M  K  T  L  R  M  M  M  M  M  R  S  V  S  W  R  S  S  G  L  P  N  I  L  R  V  I  V  L  A  M  R  M  M  M  K  L  D  V  E  K  S  G  R  Y  Q  G  C  *  V  K  V  A  K  F  I  V  Q  I  *  V  I  T  I  R  L  K  Q  L  K  G  L  R  N  P  N  L  K  E  H  L  R  V  R  T  M  K  R  W  W  F  L  I  L  S  *  Y  R  R  R  R  K  N  *  R  N  *  L  I  S  Q  *  L  K  G  E  K  W  P  *  L  L  A  S  R  H  F  N  L  E  K  I  F  L  A  V  Q  L  S  F  P  I  D  F  H  L  H  H  L  K  :  N  K  R  R  S  S  L  K  W  S  S  S  *  R  K  L  R  L  R  K  D  A  G  C  K  L  K  R  L  L  E  S  R  R :   L  K  Q  *  G  K  S  *  V  K  I  L  V  G  K  S  E  K  I  K  L  R  S  V  K  R  S  *  H  R :   K  E  L  E  Q  L  L  H  Y  H  Q  M  L  S  D  G  L  W </second_frame>
            <third_frame>   E  T  E  N  *  S  I  S  A  A  S  K  G  V  S  V  E  F  K  L  S  *  *  F  I  H  F  I  S  T  T  I  *  *  F  E  Q  I  I  *  L  *  *  C  *  L  W  *  Y  F  K  N  I  L  *  *  P  H  *  S  *  G  C  R  *  V  W  C  R  R  W  E  L  W  V  L  L  F  Q  *  Y  R  A  K  A  W  S  D  R  Y  E  *  I  *  *  R  R  P  S  N  I  S  G  R  G  S  Q  K  W  N  C  D  V  Q  *  S  F  W  N  A  R  S  S  I  R  W  S  W  E  *  H  Q  S  Q  E  S  E  T  Q  S  W  W  C  Y  K  N  N  K  H  F  C  R  W  I  L  F  R  C  P  S  E  M  A  T  Q  G  H  Y  L  F  S  C  C  D  G  S  F  I  H  I  C  F  M  K  L  K  M  C  I  I  L  I  G  D  A  P  W  F  N  A  K  E  M  V  Q  H  T  I   : A  E  Y  R  W  T  S  F  L  L  *  W  K  G  N  W  L  A  R  Y  P  L  E  G  F  C  *  N  W  F  W  C  *  E  S  G  F  L  D  G  S  V  T  W  A  V  C  P  F  E  T  I  R  K  I  *  G  I  S  *  K  Q  V  S  A  K  K  T  F  I  R  *  N  I  *  *  *  R  H  *  G  *  *  *  *  *  D  P  F  P  G  E  A  Q  V  F  Q  I  F  C  V  L  *  C  W  L  *  G  *  *  *  S  W  M  *  K  K  A  E  D  I  K  G  V  K  S  K  *  Q  S  L  *  C  R  S  E  L  L  R  F  A  *  S  S  *  R  D  *  E  I  Q  I  *  K  S  I  S  G  F  G  L  *  R  G  G  G  F  *  Y  *  V  S  T  E  E  E  E  K  T  K  G  I  S  *  Y  L  S  S  *  K  E  K  N  G  R  D  Y  S  P  A  G  T  S  I  W  K  R  Y  F  L  Q  C  S  *  V  S  P  *  T  S  T  C  T  T  *  K :   T  K  G  E  A  L  *  S  G  A  A  V  E  E  S  *  G  C  A  K  T  Q  D  A  S  *  K  G  C  S  R  V  G   : G  *  S  N  K  E  N  P  K  S  R  F  *  *  E  K  A  R  R  *  N  *  E  A  S  R  G  V  S  T   : G  K  N  W  S  S  F  F  T  I  I  K  C  Y  Q  M  G  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24390" stop="23715"/>
                    <exon start="23639" stop="23539"/>
                    <exon start="23433" stop="23344"/>
                    <exon start="22783" stop="22730"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNTGGHHSSYSGRAIGLRGIPWKDFAKTGFGVRKVDSSTDQLPGQFAPLKQLEKYEASHKSKSLLKRHLSGETFDDEDTEDDDDDEIRFLEKLRSSKYSACYSAGYEDDDEVGCRKKRKISRVLSQSSKVYSADLSYYDSLKAVKGIEKSKSERASQGSDYEEVVVSDTELVPKKKKKLKELADISVVERRKMAVTTRQQALQSGKDISCSAVEFPHRLPPAPPKKQKEKLSEVEQQLKKAEAAQRRRMQAEKAARESEAEAIRKILSQDSSRKKREDKIKKRQEELAQERTGAASSLSSNAIRWVM</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25458" stop="24907"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKQRTDLYRRPQKESQLNLNCRDNSSISSAPPSDSLSKSSSCDNADYGNISRTSYSNLIEAEAAGEFGVEGGNSGYSCSSDTEQKHGQIDMSRFSEGDQATSRVEDPKSGTVMCSNHSGMPGVVSDGAGNDTKVKKVKLKVGGVTKTINTSVAGSSSDAPQKWQPKVIIYFPVVMAPLYTFAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="32267" PGL_stop="33179"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32267" e_stop="32392"/>
            <exon e_start="32485" e_stop="33179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.966" e_score="0.960"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="32267" e_stop="32392" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.966">
            <gDNA_intron_boundary i_start="32393" i_stop="32484" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.912">
            <gDNA_exon_boundary e_start="32485" e_stop="33179" e_length="695"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32267" stop="32392"/>
              <exon start="32485" stop="33179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTTGTTGAACTTGGCTCCTATGGACAATGTCATGATCAATCTTACATCTAACATACTGAGCTACTACCGAATACACGGTAAAGGGTGGACTCCAAGAAGGAAGACAAAGAAAGTTGTTCTTCAG : GGACTGTACCAACCAGGCATCTTTAGCACTTTTCTTACTGGTGAAAGAGTTCCTCCTTGGTTTAGCTCAAAGTTCTCAAAAGAATCAAGTGCATCCTTCAAAGTACCTACTTGCAATTCCAGAATAGAGGGATTGAGTTTTTGCATTGTGTACAAGCGTTCCACGATTGGGCTTTCACCGAGCATTCTCGGTCCTTCACGGCTAACACCACCTCCAAGAATTTCTCATCTTGCCATGCGCAAAGCTCAAGGAAGACCACTTCGTTATAGGCTGGTGGAAAATAAACCATATGAATCAACTTTCGATTGCCCATGCATTACAGTTAATAACTTAACTCGAAGTTTGAAATGGTCTTACCAGCCCTTGTTCTATGGAGTTCCAGAAGGGAGAGAAGGAATGATGTGGTTAAGCCATTGGAAACTAGAGAATCAGTTGAGCAGTGAAGATGTTATAGAGGTCACAGTTACCGCAGGAGATGGTATCACAGTTATGGAATTTGGGATCAAAATTGTGCATGTTGAAGAGACAAAAGTGCTAGGGAAACCAGGCTGTGAAGAGACAGATATTGTCAATCCATTTTGGGATGTTAATTTGGTACATGCCACCACTTCAAAGGATACTTTTTCTGTCCGTCTTCCTCCTACTTATCGTTCCTTACGTGCTGCTCATGAGCTATTTATGGAGAAGGCACTTAA</gDNA_template>
            <first_frame> G  L  L  N  L  A  P  M  D  N  V  M  I  N  L  T  S  N  I  L  S  Y  Y  R  I  H  G  K  G  W  T  P  R  R  K  T  K  K  V  V  L  Q  :  G  L  Y  Q  P  G  I  F  S  T  F  L  T  G  E  R  V  P  P  W  F  S  S  K  F  S  K  E  S  S  A  S  F  K  V  P  T  C  N  S  R  I  E  G  L  S  F  C  I  V  Y  K  R  S  T  I  G  L  S  P  S  I  L  G  P  S  R  L  T  P  P  P  R  I  S  H  L  A  M  R  K  A  Q  G  R  P  L  R  Y  R  L  V  E  N  K  P  Y  E  S  T  F  D  C  P  C  I  T  V  N  N  L  T  R  S  L  K  W  S  Y  Q  P  L  F  Y  G  V  P  E  G  R  E  G  M  M  W  L  S  H  W  K  L  E  N  Q  L  S  S  E  D  V  I  E  V  T  V  T  A  G  D  G  I  T  V  M  E  F  G  I  K  I  V  H  V  E  E  T  K  V  L  G  K  P  G  C  E  E  T  D  I  V  N  P  F  W  D  V  N  L  V  H  A  T  T  S  K  D  T  F  S  V  R  L  P  P  T  Y  R  S  L  R  A  A  H  E  L  F  M  E  K  A  L   </first_frame>
            <second_frame>  A  C  *  T  W  L  L  W  T  M  S  *  S  I  L  H  L  T  Y  *  A  T  T  E  Y  T  V  K  G  G  L  Q  E  G  R  Q  R  K  L  F  F  R :   D  C  T  N  Q  A  S  L  A  L  F  L  L  V  K  E  F  L  L  G  L  A  Q  S  S  Q  K  N  Q  V  H  P  S  K  Y  L  L  A  I  P  E  *  R  D  *  V  F  A  L  C  T  S  V  P  R  L  G  F  H  R  A  F  S  V  L  H  G  *  H  H  L  Q  E  F  L  I  L  P  C  A  K  L  K  E  D  H  F  V  I  G  W  W  K  I  N  H  M  N  Q  L  S  I  A  H  A  L  Q  L  I  T  *  L  E  V  *  N  G  L  T  S  P  C  S  M  E  F  Q  K  G  E  K  E  *  C  G  *  A  I  G  N  *  R  I  S  *  A  V  K  M  L  *  R  S  Q  L  P  Q  E  M  V  S  Q  L  W  N  L  G  S  K  L  C  M  L  K  R  Q  K  C  *  G  N  Q  A  V  K  R  Q  I  L  S  I  H  F  G  M  L  I  W  Y  M  P  P  L  Q  R  I  L  F  L  S  V  F  L  L  L  I  V  P  Y  V  L  L  M  S  Y  L  W  R  R  H  L  </second_frame>
            <third_frame>   L  V  E  L  G  S  Y  G  Q  C  H  D  Q  S  Y  I  *  H  T  E  L  L  P  N  T  R  *  R  V  D  S  K  K  E  D  K  E  S  C  S  S   : G  T  V  P  T  R  H  L  *  H  F  S  Y  W  *  K  S  S  S  L  V  *  L  K  V  L  K  R  I  K  C  I  L  Q  S  T  Y  L  Q  F  Q  N  R  G  I  E  F  L  H  C  V  Q  A  F  H  D  W  A  F  T  E  H  S  R  S  F  T  A  N  T  T  S  K  N  F  S  S  C  H  A  Q  S  S  R  K  T  T  S  L  *  A  G  G  K  *  T  I  *  I  N  F  R  L  P  M  H  Y  S  *  *  L  N  S  K  F  E  M  V  L  P  A  L  V  L  W  S  S  R  R  E  R  R  N  D  V  V  K  P  L  E  T  R  E  S  V  E  Q  *  R  C  Y  R  G  H  S  Y  R  R  R  W  Y  H  S  Y  G  I  W  D  Q  N  C  A  C  *  R  D  K  S  A  R  E  T  R  L  *  R  D  R  Y  C  Q  S  I  L  G  C  *  F  G  T  C  H  H  F  K  G  Y  F  F  C  P  S  S  S  Y  L  S  F  L  T  C  C  S  *  A  I  Y  G  E  G  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32267" stop="32392"/>
                    <exon start="32485" stop="33177"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLLNLAPMDNVMINLTSNILSYYRIHGKGWTPRRKTKKVVLQGLYQPGIFSTFLTGERVPPWFSSKFSKESSASFKVPTCNSRIEGLSFCIVYKRSTIGLSPSILGPSRLTPPPRISHLAMRKAQGRPLRYRLVENKPYESTFDCPCITVNNLTRSLKWSYQPLFYGVPEGREGMMWLSHWKLENQLSSEDVIEVTVTAGDGITVMEFGIKIVHVEETKVLGKPGCEETDIVNPFWDVNLVHATTSKDTFSVRLPPTYRSLRAAHELFMEKAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="37023" PGL_stop="33260"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37023" e_stop="36751"/>
            <exon e_start="36167" e_stop="35953"/>
            <exon e_start="35787" e_stop="35630"/>
            <exon e_start="35253" e_stop="35066"/>
            <exon e_start="34991" e_stop="34739"/>
            <exon e_start="34590" e_stop="34442"/>
            <exon e_start="34334" e_stop="34200"/>
            <exon e_start="33904" e_stop="33260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.539" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.962" e_score="0.993"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37023" e_stop="36751" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36750" i_stop="36168" i_length="583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36167" e_stop="35953" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="35952" i_stop="35788" i_length="165"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35787" e_stop="35630" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.539">
            <gDNA_intron_boundary i_start="35629" i_stop="35254" i_length="376"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35253" e_stop="35066" e_length="188"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.981">
            <gDNA_intron_boundary i_start="35065" i_stop="34992" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34991" e_stop="34739" e_length="253"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34738" i_stop="34591" i_length="148"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34590" e_stop="34442" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.892" acc_prob="0.997">
            <gDNA_intron_boundary i_start="34441" i_stop="34335" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="34334" e_stop="34200" e_length="135"/>
          </exon>
          <intron i_serial="7" don_prob="0.834" acc_prob="0.962">
            <gDNA_intron_boundary i_start="34199" i_stop="33905" i_length="295"/>
          </intron>
          <exon e_serial="8" e_score="0.975">
            <gDNA_exon_boundary e_start="33904" e_stop="33260" e_length="645"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37023" stop="36751"/>
              <exon start="36167" stop="35953"/>
              <exon start="35787" stop="35630"/>
              <exon start="35253" stop="35066"/>
              <exon start="34991" stop="34739"/>
              <exon start="34590" stop="34442"/>
              <exon start="34334" stop="34200"/>
              <exon start="33904" stop="33742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37014" stop="36751"/>
              <exon start="36167" stop="35953"/>
              <exon start="35787" stop="35644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37007" stop="36751"/>
              <exon start="36167" stop="35953"/>
              <exon start="35787" stop="35630"/>
              <exon start="35253" stop="35187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37007" stop="36751"/>
              <exon start="36167" stop="35953"/>
              <exon start="35787" stop="35749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37007" stop="36751"/>
              <exon start="36167" stop="35953"/>
              <exon start="35787" stop="35773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37005" stop="36751"/>
              <exon start="36167" stop="35953"/>
              <exon start="35787" stop="35630"/>
              <exon start="35253" stop="35150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37005" stop="36751"/>
              <exon start="36167" stop="36005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37003" stop="36751"/>
              <exon start="36167" stop="36131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36994" stop="36751"/>
              <exon start="36167" stop="35953"/>
              <exon start="35787" stop="35630"/>
              <exon start="35253" stop="35191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36994" stop="36751"/>
              <exon start="36167" stop="35953"/>
              <exon start="35787" stop="35630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36994" stop="36751"/>
              <exon start="36167" stop="35953"/>
              <exon start="35787" stop="35740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36993" stop="36751"/>
              <exon start="36167" stop="35953"/>
              <exon start="35787" stop="35630"/>
              <exon start="35253" stop="35127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36987" stop="36751"/>
              <exon start="36167" stop="35953"/>
              <exon start="35787" stop="35630"/>
              <exon start="35253" stop="35071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36977" stop="36751"/>
              <exon start="36167" stop="35953"/>
              <exon start="35787" stop="35630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36970" stop="36751"/>
              <exon start="36167" stop="35953"/>
              <exon start="35787" stop="35630"/>
              <exon start="35253" stop="35124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36940" stop="36751"/>
              <exon start="36167" stop="35953"/>
              <exon start="35787" stop="35630"/>
              <exon start="35253" stop="35149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36787" stop="36751"/>
              <exon start="36167" stop="35953"/>
              <exon start="35787" stop="35630"/>
              <exon start="35253" stop="35126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36123" stop="35953"/>
              <exon start="35787" stop="35630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36087" stop="35953"/>
              <exon start="35787" stop="35630"/>
              <exon start="35253" stop="35066"/>
              <exon start="34991" stop="34739"/>
              <exon start="34590" stop="34578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35239" stop="35066"/>
              <exon start="34991" stop="34739"/>
              <exon start="34590" stop="34442"/>
              <exon start="34334" stop="34304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35225" stop="35066"/>
              <exon start="34991" stop="34739"/>
              <exon start="34590" stop="34442"/>
              <exon start="34334" stop="34270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35224" stop="35066"/>
              <exon start="34991" stop="34739"/>
              <exon start="34590" stop="34530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34907" stop="34739"/>
              <exon start="34590" stop="34442"/>
              <exon start="34334" stop="34200"/>
              <exon start="33904" stop="33641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34564" stop="34442"/>
              <exon start="34334" stop="34200"/>
              <exon start="33904" stop="33728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34466" stop="34442"/>
              <exon start="34334" stop="34200"/>
              <exon start="33904" stop="33353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34294" stop="34200"/>
              <exon start="33904" stop="33391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34292" stop="34200"/>
              <exon start="33904" stop="33403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34233" stop="34200"/>
              <exon start="33904" stop="33750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34206" stop="34200"/>
              <exon start="33904" stop="33260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33863" stop="33511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33857" stop="33391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33779" stop="33405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33693" stop="33386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33611" stop="33387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACCCTAAACGAGTTCTCTTCCGCTACAATTGAGCAAACATCGGGAGAGATTGAGAAGTAAAATTCCATGGCGCTGTATCTGTTGTATGAGTCGGCGTCTGGGTACGGTTTGTTTTTGGCTCACGGGATTGATGAGATAGGGCAGAACACGGAGGCGGTCCGGAACTCAATCGATGACCTCAATCGCTTTGGGAAAGTTGTAAAGATTGAAGCTTTTAACCCTTTTGAGTCCGCTCTTGATGCCCTAAATCAATGCAATGCTGTTTCTGAAG : GTCAAATGACTGAGGAGCTACAGAACTTTTTGGAGCGTAGTCTCCCAAAAGTCAAGGAGGGTAAGAAAGCTAAGTTCAGCTTAGGATTGGCAGAGCCTAAGCTTGGGTCACATATCCATGAAGTTACTAAGATTCCTTGCCAAAGTAACGAGTTTGTTCTTGAGATTTTGCGTGGAGTACGATTGCATTTTGAGAAATTTGTTAAAAACCTTAAG : CCTGGTGATTCGGAGAAAGCCCAACTTGGTCTGAGTCATAGTTACAGCAGAGCAAAGGTCAAGTTCAATGTCAACCGTGTTGACAATATGGTCACTCAGGCAATAGTCCTACTTGACACTCTTGATAAAGATATAAATACCTTTGCCATGAGAGTCAG : AGAGTGGTACTCTTGGCATTTCCCCGAGTTGGTCAAGATTGTCAATGACAACTATCTATATGCCAAGGTTGCAAAATTTGTTGATGACAAATCTCAATTGTCTGAAGACAAAATTTCAGCATTAACTGAAATAGTCGGAGATGAAGATAAAGCAAAAGAAATCGTAGAAGCTGCAAAAGCTTCCATGG : GCCAGGATTTGTCACCAGTTGACTTGATTAATGTCAAGCTATTTGCACAGAGGGTAATGGACCTTGTTGAATACAGGAAAAATCTTTATGATTATCTTGTCGCCAAAATGCACGACATAGCACCAAATTTGGCTGCTCTGATTGGTGAAGTTGTGGGTGCTCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTGGCGAAGTGCCCTTCTTCTACCCTTCAGATCCTGGGTGCTGAGAAGGCACTCTTCAG : GGCCTTGAAAACCAAAGGAAATACACCAAAATATGGACTCATATTCCATTCTTCTTTCATTGGCCGTGCCTCTGCTCGTAATAAAGGTCGAATGGCTCGTTATCTTGCAAACAAGTGTTCTATTGCTTCTCGTCTCGACTGTTTCTTAG : ATAAGAGTACTACTACTTTTGGAGAGAAACTCCGTGAACAAGTTGAGGAGCGTCTAGACTTCTATGACAAGGGGGTTGCACCACGAAAAAACCTAGATGTGATGAAAGCTGCTATTGAAACCGTCGAAGATAAAG : ACACAGAAATGGACGTGGATGAGCCTTCCACGAAGAAAAGCAAGAAAAAGAAATCCAAAGTTGATGTGGTGGAATATGCTCAACCCATGATCGAGGATAAACCACTTGAAACAAATGGTGATGCCTCTGAAGAACCCAAGTCTGAAAAGAAAAAGAAGAAGAAAGAGAAGCGGAAATCAGAAGAGGAGGCAGAGCATGAAGAGGATCAGACTGTTGGTAATGGTAATGGCGTGCATGAGGATGGAACAGCAAAGAAGAAGAAGAAAAAGAAGAACAAAGAGGACAATGGAGAGGAACTCCAAGCTGCTGTTGAAATTAAAAAGAAGAAAAAGAAGTCCAAAGTTCAAGATGATGAATAAATGTACAATTTTTTCTAATCTTGGTCTTGTTATTTTGACGGTTTTTGGTCACCTCTTATAGTTGCCTGTATGCTCCTAGGTTAGATTTTTGTCTGTCTTTCAATTTCGCGTGTATCAAACACTCCTCTTATTTACTATTATCAGGATGGTCTTATCATGATTCCCTTCCTTATTTTTTCACGTAGATTTATTCCTCAAGTGTTAAGATCATCTGGGTACCTGATTTAAAAAGGTTACTGTCATGCAATATAAGTGTGAACTGTTTAAGTTCTCACTGTTTTCTGAC</gDNA_template>
            <first_frame> *  P  *  T  S  S  L  P  L  Q  L  S  K  H  R  E  R  L  R  S  K  I  P  W  R  C  I  C  C  M  S  R  R  L  G  T  V  C  F  W  L  T  G  L  M  R  *  G  R  T  R  R  R  S  G  T  Q  S  M  T  S  I  A  L  G  K  L  *  R  L  K  L  L  T  L  L  S  P  L  L  M  P  *  I  N  A  M  L  F  L  K  :  V  K  *  L  R  S  Y  R  T  F  W  S  V  V  S  Q  K  S  R  R  V  R  K  L  S  S  A  *  D  W  Q  S  L  S  L  G  H  I  S  M  K  L  L  R  F  L  A  K  V  T  S  L  F  L  R  F  C  V  E  Y  D  C  I  L  R  N  L  L  K  T  L  S :   L  V  I  R  R  K  P  N  L  V  *  V  I  V  T  A  E  Q  R  S  S  S  M  S  T  V  L  T  I  W  S  L  R  Q  *  S  Y  L  T  L  L  I  K  I  *  I  P  L  P  *  E  S   : E  S  G  T  L  G  I  S  P  S  W  S  R  L  S  M  T  T  I  Y  M  P  R  L  Q  N  L  L  M  T  N  L  N  C  L  K  T  K  F  Q  H  *  L  K  *  S  E  M  K  I  K  Q  K  K  S  *  K  L  Q  K  L  P  W  :  A  R  I  C  H  Q  L  T  *  L  M  S  S  Y  L  H  R  G  *  W  T  L  L  N  T  G  K  I  F  M  I  I  L  S  P  K  C  T  T  *  H  Q  I  W  L  L  *  L  V  K  L  W  V  L  V  *  F  L  M  L  V  V  S  Q  I  W  R  S  A  L  L  L  P  F  R  S  W  V  L  R  R  H  S  S   : G  P  *  K  P  K  E  I  H  Q  N  M  D  S  Y  S  I  L  L  S  L  A  V  P  L  L  V  I  K  V  E  W  L  V  I  L  Q  T  S  V  L  L  L  L  V  S  T  V  S  *  :  I  R  V  L  L  L  L  E  R  N  S  V  N  K  L  R  S  V  *  T  S  M  T  R  G  L  H  H  E  K  T  *  M  *  *  K  L  L  L  K  P  S  K  I  K  :  T  Q  K  W  T  W  M  S  L  P  R  R  K  A  R  K  R  N  P  K  L  M  W  W  N  M  L  N  P  *  S  R  I  N  H  L  K  Q  M  V  M  P  L  K  N  P  S  L  K  R  K  R  R  R  K  R  S  G  N  Q  K  R  R  Q  S  M  K  R  I  R  L  L  V  M  V  M  A  C  M  R  M  E  Q  Q  R  R  R  R  K  R  R  T  K  R  T  M  E  R  N  S  K  L  L  L  K  L  K  R  R  K  R  S  P  K  F  K  M  M  N  K  C  T  I  F  S  N  L  G  L  V  I  L  T  V  F  G  H  L  L  *  L  P  V  C  S  *  V  R  F  L  S  V  F  Q  F  R  V  Y  Q  T  L  L  L  F  T  I  I  R  M  V  L  S  *  F  P  S  L  F  F  H  V  D  L  F  L  K  C  *  D  H  L  G  T  *  F  K  K  V  T  V  M  Q  Y  K  C  E  L  F  K  F  S  L  F  S  D </first_frame>
            <second_frame>  N  P  K  R  V  L  F  R  Y  N  *  A  N  I  G  R  D  *  E  V  K  F  H  G  A  V  S  V  V  *  V  G  V  W  V  R  F  V  F  G  S  R  D  *  *  D  R  A  E  H  G  G  G  P  E  L  N  R  *  P  Q  S  L  W  E  S  C  K  D  *  S  F  *  P  F  *  V  R  S  *  C  P  K  S  M  Q  C  C  F  *  R :   S  N  D  *  G  A  T  E  L  F  G  A  *  S  P  K  S  Q  G  G  *  E  S  *  V  Q  L  R  I  G  R  A  *  A  W  V  T  Y  P  *  S  Y  *  D  S  L  P  K  *  R  V  C  S  *  D  F  A  W  S  T  I  A  F  *  E  I  C  *  K  P  *   : A  W  *  F  G  E  S  P  T  W  S  E  S  *  L  Q  Q  S  K  G  Q  V  Q  C  Q  P  C  *  Q  Y  G  H  S  G  N  S  P  T  *  H  S  *  *  R  Y  K  Y  L  C  H  E  S  Q  :  R  V  V  L  L  A  F  P  R  V  G  Q  D  C  Q  *  Q  L  S  I  C  Q  G  C  K  I  C  *  *  Q  I  S  I  V  *  R  Q  N  F  S  I  N  *  N  S  R  R  *  R  *  S  K  R  N  R  R  S  C  K  S  F  H  G :   P  G  F  V  T  S  *  L  D  *  C  Q  A  I  C  T  E  G  N  G  P  C  *  I  Q  E  K  S  L  *  L  S  C  R  Q  N  A  R  H  S  T  K  F  G  C  S  D  W  *  S  C  G  C  S  F  N  F  S  C  W  *  S  H  K  F  G  E  V  P  F  F  Y  P  S  D  P  G  C  *  E  G  T  L  Q  :  G  L  E  N  Q  R  K  Y  T  K  I  W  T  H  I  P  F  F  F  H  W  P  C  L  C  S  *  *  R  S  N  G  S  L  S  C  K  Q  V  F  Y  C  F  S  S  R  L  F  L  R :   *  E  Y  Y  Y  F  W  R  E  T  P  *  T  S  *  G  A  S  R  L  L  *  Q  G  G  C  T  T  K  K  P  R  C  D  E  S  C  Y  *  N  R  R  R  *  R :   H  R  N  G  R  G  *  A  F  H  E  E  K  Q  E  K  E  I  Q  S  *  C  G  G  I  C  S  T  H  D  R  G  *  T  T  *  N  K  W  *  C  L  *  R  T  Q  V  *  K  E  K  E  E  E  R  E  A  E  I  R  R  G  G  R  A  *  R  G  S  D  C  W  *  W  *  W  R  A  *  G  W  N  S  K  E  E  E  E  K  E  E  Q  R  G  Q  W  R  G  T  P  S  C  C  *  N  *  K  E  E  K  E  V  Q  S  S  R  *  *  I  N  V  Q  F  F  L  I  L  V  L  L  F  *  R  F  L  V  T  S  Y  S  C  L  Y  A  P  R  L  D  F  C  L  S  F  N  F  A  C  I  K  H  S  S  Y  L  L  L  S  G  W  S  Y  H  D  S  L  P  Y  F  F  T  *  I  Y  S  S  S  V  K  I  I  W  V  P  D  L  K  R  L  L  S  C  N  I  S  V  N  C  L  S  S  H  C  F  L   </second_frame>
            <third_frame>   T  L  N  E  F  S  S  A  T  I  E  Q  T  S  G  E  I  E  K  *  N  S  M  A  L  Y  L  L  Y  E  S  A  S  G  Y  G  L  F  L  A  H  G  I  D  E  I  G  Q  N  T  E  A  V  R  N  S  I  D  D  L  N  R  F  G  K  V  V  K  I  E  A  F  N  P  F  E  S  A  L  D  A  L  N  Q  C  N  A  V  S  E   : G  Q  M  T  E  E  L  Q  N  F  L  E  R  S  L  P  K  V  K  E  G  K  K  A  K  F  S  L  G  L  A  E  P  K  L  G  S  H  I  H  E  V  T  K  I  P  C  Q  S  N  E  F  V  L  E  I  L  R  G  V  R  L  H  F  E  K  F  V  K  N  L  K  :  P  G  D  S  E  K  A  Q  L  G  L  S  H  S  Y  S  R  A  K  V  K  F  N  V  N  R  V  D  N  M  V  T  Q  A  I  V  L  L  D  T  L  D  K  D  I  N  T  F  A  M  R  V  R :   E  W  Y  S  W  H  F  P  E  L  V  K  I  V  N  D  N  Y  L  Y  A  K  V  A  K  F  V  D  D  K  S  Q  L  S  E  D  K  I  S  A  L  T  E  I  V  G  D  E  D  K  A  K  E  I  V  E  A  A  K  A  S  M   : G  Q  D  L  S  P  V  D  L  I  N  V  K  L  F  A  Q  R  V  M  D  L  V  E  Y  R  K  N  L  Y  D  Y  L  V  A  K  M  H  D  I  A  P  N  L  A  A  L  I  G  E  V  V  G  A  R  L  I  S  H  A  G  S  L  T  N  L  A  K  C  P  S  S  T  L  Q  I  L  G  A  E  K  A  L  F  R :   A  L  K  T  K  G  N  T  P  K  Y  G  L  I  F  H  S  S  F  I  G  R  A  S  A  R  N  K  G  R  M  A  R  Y  L  A  N  K  C  S  I  A  S  R  L  D  C  F  L   : D  K  S  T  T  T  F  G  E  K  L  R  E  Q  V  E  E  R  L  D  F  Y  D  K  G  V  A  P  R  K  N  L  D  V  M  K  A  A  I  E  T  V  E  D  K   : D  T  E  M  D  V  D  E  P  S  T  K  K  S  K  K  K  K  S  K  V  D  V  V  E  Y  A  Q  P  M  I  E  D  K  P  L  E  T  N  G  D  A  S  E  E  P  K  S  E  K  K  K  K  K  K  E  K  R  K  S  E  E  E  A  E  H  E  E  D  Q  T  V  G  N  G  N  G  V  H  E  D  G  T  A  K  K  K  K  K  K  K  N  K  E  D  N  G  E  E  L  Q  A  A  V  E  I  K  K  K  K  K  K  S  K  V  Q  D  D  E  *  M  Y  N  F  F  *  S  W  S  C  Y  F  D  G  F  W  S  P  L  I  V  A  C  M  L  L  G  *  I  F  V  C  L  S  I  S  R  V  S  N  T  P  L  I  Y  Y  Y  Q  D  G  L  I  M  I  P  F  L  I  F  S  R  R  F  I  P  Q  V  L  R  S  S  G  Y  L  I  *  K  G  Y  C  H  A  I  *  V  *  T  V  *  V  L  T  V  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36961" stop="36751"/>
                    <exon start="36167" stop="35953"/>
                    <exon start="35787" stop="35630"/>
                    <exon start="35253" stop="35066"/>
                    <exon start="34991" stop="34739"/>
                    <exon start="34590" stop="34442"/>
                    <exon start="34334" stop="34200"/>
                    <exon start="33904" stop="33546"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1665</number_coding_nucleotides>
                  <number_encoded_amino_acids>555</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSMALYLLYESASGYGLFLAHGIDEIGQNTEAVRNSIDDLNRFGKVVKIEAFNPFESALDALNQCNAVSEGQMTEELQNFLERSLPKVKEGKKAKFSLGLAEPKLGSHIHEVTKIPCQSNEFVLEILRGVRLHFEKFVKNLKPGDSEKAQLGLSHSYSRAKVKFNVNRVDNMVTQAIVLLDTLDKDINTFAMRVREWYSWHFPELVKIVNDNYLYAKVAKFVDDKSQLSEDKISALTEIVGDEDKAKEIVEAAKASMGQDLSPVDLINVKLFAQRVMDLVEYRKNLYDYLVAKMHDIAPNLAALIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTKGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRLDCFLDKSTTTFGEKLREQVEERLDFYDKGVAPRKNLDVMKAAIETVEDKDTEMDVDEPSTKKSKKKKSKVDVVEYAQPMIEDKPLETNGDASEEPKSEKKKKKKEKRKSEEEAEHEEDQTVGNGNGVHEDGTAKKKKKKKNKEDNGEELQAAVEIKKKKKKSKVQDDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="40030" PGL_stop="42938"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40030" e_stop="40333"/>
            <exon e_start="41592" e_stop="42938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40030" e_stop="40333" e_length="304"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40334" i_stop="41591" i_length="1258"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="41592" e_stop="42938" e_length="1347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40030" stop="40333"/>
              <exon start="41592" stop="42938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40038" stop="40333"/>
              <exon start="41592" stop="41916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40045" stop="40333"/>
              <exon start="41592" stop="41638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40047" stop="40333"/>
              <exon start="41592" stop="41962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40057" stop="40333"/>
              <exon start="41592" stop="41963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40057" stop="40333"/>
              <exon start="41592" stop="41832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42003" stop="42810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42004" stop="42540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323735" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAAAGAAATGGTGGGCAGAGCTATCTGTTTGAAGCTTCTCCGATCAACGACTTATCGCCGATGTTTCTCAACAGAAACGGCGGCGGTGGAGACCATATCAACGCCGGCCATCAGCCAAAGAAAACGAATAAGCGACGGTCGCCGGAAATTGTCGGACCTTATCAATAGAGCAGACTCTGAATCCAACATTAAAGATGCTTTAAACAAATTGGATAACGAAGGGGAATCCATACAAAAGATAGACATTGTTGGCTGTATCAACAATCTCCGTAGAACCGATAGGTTTGATCTTGCCCTTCAG : CTGTCTGAATGGATGGAAAGCAGCAAAATTATGATCAGCAATGGTGATCGGGCAATACGGATACACCTTCTTGCCAACACAAAGGGAACAGATTCAGCCGAAATGTATTTTGACAGCCTGCAAGAATCTGAAAAAACTAGTAAGACCTATGGAGCACTTCTCAGCTCTTATTGCAGGCAGAAAATGTTTGATAAAGTGTCAAAGCTTTTTGAGAAGATGAAGGAGCTTAATTTTACATCTACTTTAAATTATAACAATGTGATATCTCTTTATTTAAGAAGTGGTCAGCCTGAAAAAGTCTCTGCACTGGTTCAAGAAATGGAGCAGAGAAATATTGCCGTTGATATATTTACCTATAATCAGTTGATGAACAGTTATGCTTTAGTGAAGGATATAGTATCAGTTGAGGCTGTTCTTGAAAAGATGGAAAAGCATCAGGTAAAGTTTGACTGGCTCACATATGGAAACCTAGCTGGGATATATATCAATAACGGCTACCGTGATAAGGCGAATGATATTCTCCAAAAGATGGAGAAAATGAAAGATATGCATGACCGTGAAGCTTTCCATACCTTAATCACATTATATCAGAAAACATCTAATCCATCAGGAGTCAATCGCTCATGGGAATTATTAAAGTCAGTTTTCCCAACTCCCAGCAAGTTTAGCTATCTCATCGTGCTTTTGGCTCTATCCAAACTGGGGGACTCGGAAGCCCTTGAGAAACGTTTTAGAGAATTGGAGTCACATTGTAAATTCTTTGACATCAGAGTTTCAAATGTGATGATGGAGTCCTATCTTGACAGAAATATGATCGAAGAAGCAAATTTGCTTTATGAGAATGTGTTGAAGCAAGGCGTTGAACCCAACTTAAGGACTTACGATGCATTCACAAATTTCTATATAAAAAATTCGCAGATAGACTCTGCTCTAAAGTATTTGGAGATGGGTGCCAGCAAGGCAAATCCTAAGAAAAAAGTTTGGTTTCCTAAGGATGAATCCATCAAGATGTTTCTAGCTTATTTTGAGGACAGTAATGATCCTGTTAGAGCTGAGAAGTTTTGCGAGATTATGAAGAAGATTAATCGCCTCGATTCCAGTGTTTATGACTCTCTTCTAAGCACAAACTCTGCAGCCTCTGAAGTGGAACTATGAACACCTTCATGCTCTTGAGGATAACATGAGTGGCTCATTGCTCAAAGTTTCTCAACCCTCTCCAAGTGGTATGGAATCTGTCGATTTCGCTCTACATTTGCCATGTTGCTATTTTTTTCATGCTCTTTGTACTTTACATTATTTAAGAACCTTACCAAGAGAGTTATGTCAGCTCACTAGTATTTCTCGCCC</gDNA_template>
            <first_frame> H  K  R  N  G  G  Q  S  Y  L  F  E  A  S  P  I  N  D  L  S  P  M  F  L  N  R  N  G  G  G  G  D  H  I  N  A  G  H  Q  P  K  K  T  N  K  R  R  S  P  E  I  V  G  P  Y  Q  *  S  R  L  *  I  Q  H  *  R  C  F  K  Q  I  G  *  R  R  G  I  H  T  K  D  R  H  C  W  L  Y  Q  Q  S  P  *  N  R  *  V  *  S  C  P  S   : A  V  *  M  D  G  K  Q  Q  N  Y  D  Q  Q  W  *  S  G  N  T  D  T  P  S  C  Q  H  K  G  N  R  F  S  R  N  V  F  *  Q  P  A  R  I  *  K  N  *  *  D  L  W  S  T  S  Q  L  L  L  Q  A  E  N  V  *  *  S  V  K  A  F  *  E  D  E  G  A  *  F  Y  I  Y  F  K  L  *  Q  C  D  I  S  L  F  K  K  W  S  A  *  K  S  L  C  T  G  S  R  N  G  A  E  K  Y  C  R  *  Y  I  Y  L  *  S  V  D  E  Q  L  C  F  S  E  G  Y  S  I  S  *  G  C  S  *  K  D  G  K  A  S  G  K  V  *  L  A  H  I  W  K  P  S  W  D  I  Y  Q  *  R  L  P  *  *  G  E  *  Y  S  P  K  D  G  E  N  E  R  Y  A  *  P  *  S  F  P  Y  L  N  H  I  I  S  E  N  I  *  S  I  R  S  Q  S  L  M  G  I  I  K  V  S  F  P  N  S  Q  Q  V  *  L  S  H  R  A  F  G  S  I  Q  T  G  G  L  G  S  P  *  E  T  F  *  R  I  G  V  T  L  *  I  L  *  H  Q  S  F  K  C  D  D  G  V  L  S  *  Q  K  Y  D  R  R  S  K  F  A  L  *  E  C  V  E  A  R  R  *  T  Q  L  K  D  L  R  C  I  H  K  F  L  Y  K  K  F  A  D  R  L  C  S  K  V  F  G  D  G  C  Q  Q  G  K  S  *  E  K  S  L  V  S  *  G  *  I  H  Q  D  V  S  S  L  F  *  G  Q  *  *  S  C  *  S  *  E  V  L  R  D  Y  E  E  D  *  S  P  R  F  Q  C  L  *  L  S  S  K  H  K  L  C  S  L  *  S  G  T  M  N  T  F  M  L  L  R  I  T  *  V  A  H  C  S  K  F  L  N  P  L  Q  V  V  W  N  L  S  I  S  L  Y  I  C  H  V  A  I  F  F  M  L  F  V  L  Y  I  I  *  E  P  Y  Q  E  S  Y  V  S  S  L  V  F  L  A  </first_frame>
            <second_frame>  T  K  E  M  V  G  R  A  I  C  L  K  L  L  R  S  T  T  Y  R  R  C  F  S  T  E  T  A  A  V  E  T  I  S  T  P  A  I  S  Q  R  K  R  I  S  D  G  R  R  K  L  S  D  L  I  N  R  A  D  S  E  S  N  I  K  D  A  L  N  K  L  D  N  E  G  E  S  I  Q  K  I  D  I  V  G  C  I  N  N  L  R  R  T  D  R  F  D  L  A  L  Q  :  L  S  E  W  M  E  S  S  K  I  M  I  S  N  G  D  R  A  I  R  I  H  L  L  A  N  T  K  G  T  D  S  A  E  M  Y  F  D  S  L  Q  E  S  E  K  T  S  K  T  Y  G  A  L  L  S  S  Y  C  R  Q  K  M  F  D  K  V  S  K  L  F  E  K  M  K  E  L  N  F  T  S  T  L  N  Y  N  N  V  I  S  L  Y  L  R  S  G  Q  P  E  K  V  S  A  L  V  Q  E  M  E  Q  R  N  I  A  V  D  I  F  T  Y  N  Q  L  M  N  S  Y  A  L  V  K  D  I  V  S  V  E  A  V  L  E  K  M  E  K  H  Q  V  K  F  D  W  L  T  Y  G  N  L  A  G  I  Y  I  N  N  G  Y  R  D  K  A  N  D  I  L  Q  K  M  E  K  M  K  D  M  H  D  R  E  A  F  H  T  L  I  T  L  Y  Q  K  T  S  N  P  S  G  V  N  R  S  W  E  L  L  K  S  V  F  P  T  P  S  K  F  S  Y  L  I  V  L  L  A  L  S  K  L  G  D  S  E  A  L  E  K  R  F  R  E  L  E  S  H  C  K  F  F  D  I  R  V  S  N  V  M  M  E  S  Y  L  D  R  N  M  I  E  E  A  N  L  L  Y  E  N  V  L  K  Q  G  V  E  P  N  L  R  T  Y  D  A  F  T  N  F  Y  I  K  N  S  Q  I  D  S  A  L  K  Y  L  E  M  G  A  S  K  A  N  P  K  K  K  V  W  F  P  K  D  E  S  I  K  M  F  L  A  Y  F  E  D  S  N  D  P  V  R  A  E  K  F  C  E  I  M  K  K  I  N  R  L  D  S  S  V  Y  D  S  L  L  S  T  N  S  A  A  S  E  V  E  L  *  T  P  S  C  S  *  G  *  H  E  W  L  I  A  Q  S  F  S  T  L  S  K  W  Y  G  I  C  R  F  R  S  T  F  A  M  L  L  F  F  S  C  S  L  Y  F  T  L  F  K  N  L  T  K  R  V  M  S  A  H  *  Y  F  S  P </second_frame>
            <third_frame>   Q  K  K  W  W  A  E  L  S  V  *  S  F  S  D  Q  R  L  I  A  D  V  S  Q  Q  K  R  R  R  W  R  P  Y  Q  R  R  P  S  A  K  E  N  E  *  A  T  V  A  G  N  C  R  T  L  S  I  E  Q  T  L  N  P  T  L  K  M  L  *  T  N  W  I  T  K  G  N  P  Y  K  R  *  T  L  L  A  V  S  T  I  S  V  E  P  I  G  L  I  L  P  F  S :   C  L  N  G  W  K  A  A  K  L  *  S  A  M  V  I  G  Q  Y  G  Y  T  F  L  P  T  Q  R  E  Q  I  Q  P  K  C  I  L  T  A  C  K  N  L  K  K  L  V  R  P  M  E  H  F  S  A  L  I  A  G  R  K  C  L  I  K  C  Q  S  F  L  R  R  *  R  S  L  I  L  H  L  L  *  I  I  T  M  *  Y  L  F  I  *  E  V  V  S  L  K  K  S  L  H  W  F  K  K  W  S  R  E  I  L  P  L  I  Y  L  P  I  I  S  *  *  T  V  M  L  *  *  R  I  *  Y  Q  L  R  L  F  L  K  R  W  K  S  I  R  *  S  L  T  G  S  H  M  E  T  *  L  G  Y  I  S  I  T  A  T  V  I  R  R  M  I  F  S  K  R  W  R  K  *  K  I  C  M  T  V  K  L  S  I  P  *  S  H  Y  I  R  K  H  L  I  H  Q  E  S  I  A  H  G  N  Y  *  S  Q  F  S  Q  L  P  A  S  L  A  I  S  S  C  F  W  L  Y  P  N  W  G  T  R  K  P  L  R  N  V  L  E  N  W  S  H  I  V  N  S  L  T  S  E  F  Q  M  *  *  W  S  P  I  L  T  E  I  *  S  K  K  Q  I  C  F  M  R  M  C  *  S  K  A  L  N  P  T  *  G  L  T  M  H  S  Q  I  S  I  *  K  I  R  R  *  T  L  L  *  S  I  W  R  W  V  P  A  R  Q  I  L  R  K  K  F  G  F  L  R  M  N  P  S  R  C  F  *  L  I  L  R  T  V  M  I  L  L  E  L  R  S  F  A  R  L  *  R  R  L  I  A  S  I  P  V  F  M  T  L  F  *  A  Q  T  L  Q  P  L  K  W  N  Y  E  H  L  H  A  L  E  D  N  M  S  G  S  L  L  K  V  S  Q  P  S  P  S  G  M  E  S  V  D  F  A  L  H  L  P  C  C  Y  F  F  H  A  L  C  T  L  H  Y  L  R  T  L  P  R  E  L  C  Q  L  T  S  I  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40031" stop="40333"/>
                    <exon start="41592" stop="42746"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1455</number_coding_nucleotides>
                  <number_encoded_amino_acids>485</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKEMVGRAICLKLLRSTTYRRCFSTETAAVETISTPAISQRKRISDGRRKLSDLINRADSESNIKDALNKLDNEGESIQKIDIVGCINNLRRTDRFDLALQLSEWMESSKIMISNGDRAIRIHLLANTKGTDSAEMYFDSLQESEKTSKTYGALLSSYCRQKMFDKVSKLFEKMKELNFTSTLNYNNVISLYLRSGQPEKVSALVQEMEQRNIAVDIFTYNQLMNSYALVKDIVSVEAVLEKMEKHQVKFDWLTYGNLAGIYINNGYRDKANDILQKMEKMKDMHDREAFHTLITLYQKTSNPSGVNRSWELLKSVFPTPSKFSYLIVLLALSKLGDSEALEKRFRELESHCKFFDIRVSNVMMESYLDRNMIEEANLLYENVLKQGVEPNLRTYDAFTNFYIKNSQIDSALKYLEMGASKANPKKKVWFPKDESIKMFLAYFEDSNDPVRAEKFCEIMKKINRLDSSVYDSLLSTNSAASEVEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="42877" PGL_stop="42308"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42877" e_stop="42308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="42877" e_stop="42308" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42877" stop="42308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417523" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACAAAGAGCATGAAAAAAATAGCAACATGGCAAATGTAGAGCGAAATCGACAGATTCCATACCACTTGGAGAGGGTTGAGAAACTTTGAGCAATGAGCCACTCATGTTATCCTCAAGAGCATGAAGGTGTTCATAGTTCCACTTCAGAGGCTGCAGAGTTTGTGCTTAGAAGAGAGTCATAAACACTGGAATCGAGGCGATTAATCTTCTTCATAATCTCGCAAAACTTCTCAGCTCTAACAGGATCATTACTGTCCTCAAAATAAGCTAGAAACATCTTGATGGATTCATCCTTAGGAAACCAAACTTTTTTCTTAGGATTTGCCTTGCTGGCACCCATCTCCAAATACTTTAGAGCAGAGTCTATCTGCGAATTTTTTATATAGAAATTTGTGAATGCATCGTAAGTCCTTAAGTTGGGTTCAACGCCTTGCTTCAACACATTCTCATAAAGCAAATTTGCTTCTTCGATCATATTTCTGTCAAGATAGGACTCCATCATCACATTTGAAACTCTGATGTCAAAGAATTTACAATGTGACTCCAATTCTCTAAAACGTTTCTCAAGG</gDNA_template>
            <first_frame> Y  K  E  H  E  K  N  S  N  M  A  N  V  E  R  N  R  Q  I  P  Y  H  L  E  R  V  E  K  L  *  A  M  S  H  S  C  Y  P  Q  E  H  E  G  V  H  S  S  T  S  E  A  A  E  F  V  L  R  R  E  S  *  T  L  E  S  R  R  L  I  F  F  I  I  S  Q  N  F  S  A  L  T  G  S  L  L  S  S  K  *  A  R  N  I  L  M  D  S  S  L  G  N  Q  T  F  F  L  G  F  A  L  L  A  P  I  S  K  Y  F  R  A  E  S  I  C  E  F  F  I  *  K  F  V  N  A  S  *  V  L  K  L  G  S  T  P  C  F  N  T  F  S  *  S  K  F  A  S  S  I  I  F  L  S  R  *  D  S  I  I  T  F  E  T  L  M  S  K  N  L  Q  C  D  S  N  S  L  K  R  F  S  R </first_frame>
            <second_frame>  T  K  S  M  K  K  I  A  T  W  Q  M  *  S  E  I  D  R  F  H  T  T  W  R  G  L  R  N  F  E  Q  *  A  T  H  V  I  L  K  S  M  K  V  F  I  V  P  L  Q  R  L  Q  S  L  C  L  E  E  S  H  K  H  W  N  R  G  D  *  S  S  S  *  S  R  K  T  S  Q  L  *  Q  D  H  Y  C  P  Q  N  K  L  E  T  S  *  W  I  H  P  *  E  T  K  L  F  S  *  D  L  P  C  W  H  P  S  P  N  T  L  E  Q  S  L  S  A  N  F  L  Y  R  N  L  *  M  H  R  K  S  L  S  W  V  Q  R  L  A  S  T  H  S  H  K  A  N  L  L  L  R  S  Y  F  C  Q  D  R  T  P  S  S  H  L  K  L  *  C  Q  R  I  Y  N  V  T  P  I  L  *  N  V  S  Q   </second_frame>
            <third_frame>   Q  R  A  *  K  K  *  Q  H  G  K  C  R  A  K  S  T  D  S  I  P  L  G  E  G  *  E  T  L  S  N  E  P  L  M  L  S  S  R  A  *  R  C  S  *  F  H  F  R  G  C  R  V  C  A  *  K  R  V  I  N  T  G  I  E  A  I  N  L  L  H  N  L  A  K  L  L  S  S  N  R  I  I  T  V  L  K  I  S  *  K  H  L  D  G  F  I  L  R  K  P  N  F  F  L  R  I  C  L  A  G  T  H  L  Q  I  L  *  S  R  V  Y  L  R  I  F  Y  I  E  I  C  E  C  I  V  S  P  *  V  G  F  N  A  L  L  Q  H  I  L  I  K  Q  I  C  F  F  D  H  I  S  V  K  I  G  L  H  H  H  I  *  N  S  D  V  K  E  F  T  M  *  L  Q  F  S  K  T  F  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0005L21.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="49310" PGL_stop="43165"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49310" e_stop="48948"/>
            <exon e_start="48877" e_stop="48810"/>
            <exon e_start="45465" e_stop="45399"/>
            <exon e_start="45262" e_stop="45108"/>
            <exon e_start="45023" e_stop="44953"/>
            <exon e_start="44183" e_stop="44115"/>
            <exon e_start="43995" e_stop="43895"/>
            <exon e_start="43601" e_stop="43182"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.783" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.746" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49310" e_stop="48948" e_length="363"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="48947" i_stop="48878" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48877" e_stop="48810" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.931" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48809" i_stop="45466" i_length="3344"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45465" e_stop="45399" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.783" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45398" i_stop="45263" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45262" e_stop="45108" e_length="155"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.746">
            <gDNA_intron_boundary i_start="45107" i_stop="45024" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45023" e_stop="44953" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="44952" i_stop="44184" i_length="769"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44183" e_stop="44115" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="44114" i_stop="43996" i_length="119"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="43995" e_stop="43895" e_length="101"/>
          </exon>
          <intron i_serial="7" don_prob="0.878" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43894" i_stop="43602" i_length="293"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="43601" e_stop="43182" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49310" stop="48948"/>
              <exon start="48877" stop="48810"/>
              <exon start="45465" stop="45399"/>
              <exon start="45262" stop="45108"/>
              <exon start="45023" stop="44953"/>
              <exon start="44183" stop="44117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49309" stop="48948"/>
              <exon start="48877" stop="48810"/>
              <exon start="45465" stop="45399"/>
              <exon start="45262" stop="45154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49309" stop="48948"/>
              <exon start="48877" stop="48810"/>
              <exon start="45465" stop="45399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49283" stop="48948"/>
              <exon start="48877" stop="48810"/>
              <exon start="45465" stop="45399"/>
              <exon start="45262" stop="45218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49267" stop="48948"/>
              <exon start="48877" stop="48810"/>
              <exon start="45465" stop="45399"/>
              <exon start="45262" stop="45108"/>
              <exon start="45023" stop="44969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49219" stop="48948"/>
              <exon start="48877" stop="48810"/>
              <exon start="45465" stop="45399"/>
              <exon start="45262" stop="45108"/>
              <exon start="45023" stop="44953"/>
              <exon start="44183" stop="44118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49219" stop="48948"/>
              <exon start="48877" stop="48810"/>
              <exon start="45465" stop="45399"/>
              <exon start="45262" stop="45108"/>
              <exon start="45023" stop="44953"/>
              <exon start="44183" stop="44118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49153" stop="48948"/>
              <exon start="48877" stop="48810"/>
              <exon start="45465" stop="45399"/>
              <exon start="45262" stop="45108"/>
              <exon start="45023" stop="44953"/>
              <exon start="44183" stop="44115"/>
              <exon start="43995" stop="43943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49153" stop="48948"/>
              <exon start="48877" stop="48810"/>
              <exon start="45465" stop="45399"/>
              <exon start="45262" stop="45108"/>
              <exon start="45023" stop="44997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45465" stop="45399"/>
              <exon start="45262" stop="45108"/>
              <exon start="45023" stop="44953"/>
              <exon start="44183" stop="44115"/>
              <exon start="43995" stop="43895"/>
              <exon start="43601" stop="43587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45428" stop="45399"/>
              <exon start="45262" stop="45108"/>
              <exon start="45023" stop="44953"/>
              <exon start="44183" stop="44115"/>
              <exon start="43995" stop="43895"/>
              <exon start="43601" stop="43184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45224" stop="45108"/>
              <exon start="45023" stop="44966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44975" stop="44953"/>
              <exon start="44183" stop="44115"/>
              <exon start="43995" stop="43895"/>
              <exon start="43601" stop="43197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44974" stop="44953"/>
              <exon start="44183" stop="44115"/>
              <exon start="43995" stop="43895"/>
              <exon start="43601" stop="43190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43962" stop="43895"/>
              <exon start="43601" stop="43185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43578" stop="43182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCTTCTTCCATGGCAGCCGGTTCTACTGAGTCGAGTCAACTCTTGATTTATCCAAAACCCCATTACTACTAACACACACAATCTTCTATTTCCACGACAAATGGAGCAATCCCTGTTACTATCAATCTTCTTATTATTCTCAATCGGGATCCAATTCGTCTCTTCCCATCAAGAATCCGGCAACTGGCATTGCGAAACCGATGAAGTATCCCGTATTTCTGCGGAGTTCAGGCCTGGAGTCGTAACCCTTGATGGACACGCTGATGATTGGGAAAATATTGAAGGATTTGAGTTTTCTCTCCTTCCTGCTCTTGACCCAGATCATGACCATGAATACAAAGGGGGGAAAATGACCGTTAAG : GCTTTACACGATGGGAAAGATGTCTACTTTTTGTTGCAAGTAGATGGAGAATATGTATACAAGAAAGG : AAATGACAATAATTGCCCATCTGTAGCACTGATGTTTCAAGTTGGTGAGAGTGCCACATATCATAGT : ATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAG : ATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGGGTTAGTTCTACAG : GAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTCAG : GTTATTCTGAGGAAGACAGTCCTTATTCAACAAAGGGTCAGAAGGGAACATTCTATTTTGAATTTTCTAGGGCTCTGAGAACCATGGATCGTCTTCAGCAG : GATGTGCAATTCACTGTCGGTCAGTCAAGCAAGTTTTCAGCTGCATTTTGGTATCCGGAGGATGGAAATCCATGGCACGGATCAGGACATTACACGATTGGTTGTGACTGGGTACCTCTAGATGTTCCTCCTGGTTCATCTGCAGGCATCAAAGTGGTATCAAGAAGCTCTTGGGACGCTGCCAATGGTTTTGCTTTTCTGTTATCTGTTGTTTCATTTGGCGTATCCTTTTTTGTTGCTTATTGGGTTCATAAGAAAAATGCCATCTCTTTTCAACCCATTGATCTTTAATCTTGTCTTTACCTTTTTATATTTTTACATAGAGGGATGGCCATGGAATATTCTTTTGTAATAAGCGCATATCTTATACTCATTGAGTGACAGAATTAGTCTATTTGCAATTTCATTAGGAGATGACTC</gDNA_template>
            <first_frame> H  L  L  P  W  Q  P  V  L  L  S  R  V  N  S  *  F  I  Q  N  P  I  T  T  N  T  H  N  L  L  F  P  R  Q  M  E  Q  S  L  L  L  S  I  F  L  L  F  S  I  G  I  Q  F  V  S  S  H  Q  E  S  G  N  W  H  C  E  T  D  E  V  S  R  I  S  A  E  F  R  P  G  V  V  T  L  D  G  H  A  D  D  W  E  N  I  E  G  F  E  F  S  L  L  P  A  L  D  P  D  H  D  H  E  Y  K  G  G  K  M  T  V  K  :  A  L  H  D  G  K  D  V  Y  F  L  L  Q  V  D  G  E  Y  V  Y  K  K  G :   N  D  N  N  C  P  S  V  A  L  M  F  Q  V  G  E  S  A  T  Y  H  S  :  M  G  G  C  K  Q  S  P  D  A  C  N  K  K  T  C  R  G  H  E  V  D  I  M  H  F  S  I  G  N  A  I  P  G  R  L  Y  G  G  N  P  V  D  N  R  D  G  N  G  G  D  R :   F  G  H  L  V  D  L  Y  A  W  S  P  H  C  M  N  L  D  G  V  S  S  T   : G  N  D  T  S  A  Q  N  D  W  R  G  A  W  W  H  S  S  F  S  T  H  S   : G  Y  S  E  E  D  S  P  Y  S  T  K  G  Q  K  G  T  F  Y  F  E  F  S  R  A  L  R  T  M  D  R  L  Q  Q  :  D  V  Q  F  T  V  G  Q  S  S  K  F  S  A  A  F  W  Y  P  E  D  G  N  P  W  H  G  S  G  H  Y  T  I  G  C  D  W  V  P  L  D  V  P  P  G  S  S  A  G  I  K  V  V  S  R  S  S  W  D  A  A  N  G  F  A  F  L  L  S  V  V  S  F  G  V  S  F  F  V  A  Y  W  V  H  K  K  N  A  I  S  F  Q  P  I  D  L  *  S  C  L  Y  L  F  I  F  L  H  R  G  M  A  M  E  Y  S  F  V  I  S  A  Y  L  I  L  I  E  *  Q  N  *  S  I  C  N  F  I  R  R  *  L </first_frame>
            <second_frame>  I  F  F  H  G  S  R  F  Y  *  V  E  S  T  L  D  L  S  K  T  P  L  L  L  T  H  T  I  F  Y  F  H  D  K  W  S  N  P  C  Y  Y  Q  S  S  Y  Y  S  Q  S  G  S  N  S  S  L  P  I  K  N  P  A  T  G  I  A  K  P  M  K  Y  P  V  F  L  R  S  S  G  L  E  S  *  P  L  M  D  T  L  M  I  G  K  I  L  K  D  L  S  F  L  S  F  L  L  L  T  Q  I  M  T  M  N  T  K  G  G  K  *  P  L  R :   L  Y  T  M  G  K  M  S  T  F  C  C  K  *  M  E  N  M  Y  T  R  K   : E  M  T  I  I  A  H  L  *  H  *  C  F  K  L  V  R  V  P  H  I  I  V :   W  V  G  V  S  N  H  L  M  H  A  T  K  K  L  V  V  G  T  K  S  I  S  C  T  S  Q  L  E  M  L  S  L  A  D  C  M  V  E  T  Q  S  T  T  E  M  V  M  G  E  T   : D  L  V  I  *  S  I  Y  M  L  G  A  H  T  V  *  I  W  M  G  L  V  L  Q  :  E  M  I  H  L  P  R  M  T  G  G  V  H  G  G  I  A  V  S  V  P  I  Q  :  V  I  L  R  K  T  V  L  I  Q  Q  R  V  R  R  E  H  S  I  L  N  F  L  G  L  *  E  P  W  I  V  F  S  R :   M  C  N  S  L  S  V  S  Q  A  S  F  Q  L  H  F  G  I  R  R  M  E  I  H  G  T  D  Q  D  I  T  R  L  V  V  T  G  Y  L  *  M  F  L  L  V  H  L  Q  A  S  K  W  Y  Q  E  A  L  G  T  L  P  M  V  L  L  F  C  Y  L  L  F  H  L  A  Y  P  F  L  L  L  I  G  F  I  R  K  M  P  S  L  F  N  P  L  I  F  N  L  V  F  T  F  L  Y  F  Y  I  E  G  W  P  W  N  I  L  L  *  *  A  H  I  L  Y  S  L  S  D  R  I  S  L  F  A  I  S  L  G  D  D   </second_frame>
            <third_frame>   S  S  S  M  A  A  G  S  T  E  S  S  Q  L  L  I  Y  P  K  P  H  Y  Y  *  H  T  Q  S  S  I  S  T  T  N  G  A  I  P  V  T  I  N  L  L  I  I  L  N  R  D  P  I  R  L  F  P  S  R  I  R  Q  L  A  L  R  N  R  *  S  I  P  Y  F  C  G  V  Q  A  W  S  R  N  P  *  W  T  R  *  *  L  G  K  Y  *  R  I  *  V  F  S  P  S  C  S  *  P  R  S  *  P  *  I  Q  R  G  E  N  D  R  *   : G  F  T  R  W  E  R  C  L  L  F  V  A  S  R  W  R  I  C  I  Q  E  R  :  K  *  Q  *  L  P  I  C  S  T  D  V  S  S  W  *  E  C  H  I  S  *   : Y  G  W  V  *  A  I  T  *  C  M  Q  Q  K  N  L  S  W  A  R  S  R  Y  H  A  L  L  N  W  K  C  Y  P  W  Q  I  V  W  W  K  P  S  R  Q  Q  R  W  *  W  G  R  Q  :  I  W  S  S  S  R  F  I  C  L  E  P  T  L  Y  E  F  G  W  G  *  F  Y  R :   K  *  Y  I  C  P  E  *  L  E  G  C  M  V  A  *  Q  F  Q  Y  P  F  R :   L  F  *  G  R  Q  S  L  F  N  K  G  S  E  G  N  I  L  F  *  I  F  *  G  S  E  N  H  G  S  S  S  A   : G  C  A  I  H  C  R  S  V  K  Q  V  F  S  C  I  L  V  S  G  G  W  K  S  M  A  R  I  R  T  L  H  D  W  L  *  L  G  T  S  R  C  S  S  W  F  I  C  R  H  Q  S  G  I  K  K  L  L  G  R  C  Q  W  F  C  F  S  V  I  C  C  F  I  W  R  I  L  F  C  C  L  L  G  S  *  E  K  C  H  L  F  S  T  H  *  S  L  I  L  S  L  P  F  Y  I  F  T  *  R  D  G  H  G  I  F  F  C  N  K  R  I  S  Y  T  H  *  V  T  E  L  V  Y  L  Q  F  H  *  E  M  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49262" stop="48948"/>
                    <exon start="48877" stop="48810"/>
                    <exon start="45465" stop="45399"/>
                    <exon start="45262" stop="45108"/>
                    <exon start="45023" stop="44953"/>
                    <exon start="44183" stop="44115"/>
                    <exon start="43995" stop="43895"/>
                    <exon start="43601" stop="43311"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIQNPITTNTHNLLFPRQMEQSLLLSIFLLFSIGIQFVSSHQESGNWHCETDEVSRISAEFRPGVVTLDGHADDWENIEGFEFSLLPALDPDHDHEYKGGKMTVKALHDGKDVYFLLQVDGEYVYKKGNDNNCPSVALMFQVGESATYHSMGGCKQSPDACNKKTCRGHEVDIMHFSIGNAIPGRLYGGNPVDNRDGNGGDRFGHLVDLYAWSPHCMNLDGVSSTGNDTSAQNDWRGAWWHSSFSTHSGYSEEDSPYSTKGQKGTFYFEFSRALRTMDRLQQDVQFTVGQSSKFSAAFWYPEDGNPWHGSGHYTIGCDWVPLDVPPGSSAGIKVVSRSSWDAANGFAFLLSVVSFGVSFFVAYWVHKKNAISFQPIDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44259" e_stop="44115"/>
            <exon e_start="43995" e_stop="43895"/>
            <exon e_start="43601" e_stop="43165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="0.924"/>
          <exon-intron don_prob="0.878" acc_prob="0.000" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="44259" e_stop="44115" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="44114" i_stop="43996" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="43995" e_stop="43895" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.878" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43894" i_stop="43602" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43601" e_stop="43165" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44259" stop="44115"/>
              <exon start="43995" stop="43895"/>
              <exon start="43601" stop="43165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421302" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43962" stop="43895"/>
              <exon start="43601" stop="43185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43578" stop="43182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCAGGACACAACATTCTTGACATGCGAGTTTTGGCTCGAGTCTGTTTGTACTTACCCTTAATTTTTGTTCTTAGGAAATGATACATCTGCCCAGAATGACTGGAGGGGTGCATGGTGGCATAGCAGTTTCAGTACCCATTCAG : GTTATTCTGAGGAAGACAGTCCTTATTCAACAAAGGGTCAGAAGGGAACATTCTATTTTGAATTTTCTAGGGCTCTGAGAACCATGGATCGTCTTCAGCAG : GATGTGCAATTCACTGTCGGTCAGTCAAGCAAGTTTTCAGCTGCATTTTGGTATCCGGAGGATGGAAATCCATGGCACGGATCAGGACATTACACGATTGGTTGTGACTGGGTACCTCTAGATGTTCCTCCTGGTTCATCTGCAGGCATCAAAGTGGTATCAAGAAGCTCTTGGGACGCTGCCAATGGTTTTGCTTTTCTGTTATCTGTTGTTTCATTTGGCGTATCCTTTTTTGTTGCTTATTGGGTTCATAAGAAAAATGCCATCTCTTTTCAACCCATTGATCTTTAATCTTGTCTTTACCTTTTTATATTTTTACATAGAGGGATGGCCATGGAATATTCTTTTGTAATAAGCGCATATCTTATACTCATTGAGTGACAGAATTAGTCTATTTGCAATTTCATTAGGAGATGACTCTATTTTGTTTTACTTTT</gDNA_template>
            <first_frame> K  Q  D  T  T  F  L  T  C  E  F  W  L  E  S  V  C  T  Y  P  *  F  L  F  L  G  N  D  T  S  A  Q  N  D  W  R  G  A  W  W  H  S  S  F  S  T  H  S   : G  Y  S  E  E  D  S  P  Y  S  T  K  G  Q  K  G  T  F  Y  F  E  F  S  R  A  L  R  T  M  D  R  L  Q  Q  :  D  V  Q  F  T  V  G  Q  S  S  K  F  S  A  A  F  W  Y  P  E  D  G  N  P  W  H  G  S  G  H  Y  T  I  G  C  D  W  V  P  L  D  V  P  P  G  S  S  A  G  I  K  V  V  S  R  S  S  W  D  A  A  N  G  F  A  F  L  L  S  V  V  S  F  G  V  S  F  F  V  A  Y  W  V  H  K  K  N  A  I  S  F  Q  P  I  D  L  *  S  C  L  Y  L  F  I  F  L  H  R  G  M  A  M  E  Y  S  F  V  I  S  A  Y  L  I  L  I  E  *  Q  N  *  S  I  C  N  F  I  R  R  *  L  Y  F  V  L  L   </first_frame>
            <second_frame>  S  R  T  Q  H  S  *  H  A  S  F  G  S  S  L  F  V  L  T  L  N  F  C  S  *  E  M  I  H  L  P  R  M  T  G  G  V  H  G  G  I  A  V  S  V  P  I  Q  :  V  I  L  R  K  T  V  L  I  Q  Q  R  V  R  R  E  H  S  I  L  N  F  L  G  L  *  E  P  W  I  V  F  S  R :   M  C  N  S  L  S  V  S  Q  A  S  F  Q  L  H  F  G  I  R  R  M  E  I  H  G  T  D  Q  D  I  T  R  L  V  V  T  G  Y  L  *  M  F  L  L  V  H  L  Q  A  S  K  W  Y  Q  E  A  L  G  T  L  P  M  V  L  L  F  C  Y  L  L  F  H  L  A  Y  P  F  L  L  L  I  G  F  I  R  K  M  P  S  L  F  N  P  L  I  F  N  L  V  F  T  F  L  Y  F  Y  I  E  G  W  P  W  N  I  L  L  *  *  A  H  I  L  Y  S  L  S  D  R  I  S  L  F  A  I  S  L  G  D  D  S  I  L  F  Y  F  </second_frame>
            <third_frame>   A  G  H  N  I  L  D  M  R  V  L  A  R  V  C  L  Y  L  P  L  I  F  V  L  R  K  *  Y  I  C  P  E  *  L  E  G  C  M  V  A  *  Q  F  Q  Y  P  F  R :   L  F  *  G  R  Q  S  L  F  N  K  G  S  E  G  N  I  L  F  *  I  F  *  G  S  E  N  H  G  S  S  S  A   : G  C  A  I  H  C  R  S  V  K  Q  V  F  S  C  I  L  V  S  G  G  W  K  S  M  A  R  I  R  T  L  H  D  W  L  *  L  G  T  S  R  C  S  S  W  F  I  C  R  H  Q  S  G  I  K  K  L  L  G  R  C  Q  W  F  C  F  S  V  I  C  C  F  I  W  R  I  L  F  C  C  L  L  G  S  *  E  K  C  H  L  F  S  T  H  *  S  L  I  L  S  L  P  F  Y  I  F  T  *  R  D  G  H  G  I  F  F  C  N  K  R  I  S  Y  T  H  *  V  T  E  L  V  Y  L  Q  F  H  *  E  M  T  L  F  C  F  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44196" stop="44115"/>
                    <exon start="43995" stop="43895"/>
                    <exon start="43601" stop="43311"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLFLGNDTSAQNDWRGAWWHSSFSTHSGYSEEDSPYSTKGQKGTFYFEFSRALRTMDRLQQDVQFTVGQSSKFSAAFWYPEDGNPWHGSGHYTIGCDWVPLDVPPGSSAGIKVVSRSSWDAANGFAFLLSVVSFGVSFFVAYWVHKKNAISFQPIDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45276" e_stop="45108"/>
            <exon e_start="45023" e_stop="44547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.746" e_score="0.988"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="45276" e_stop="45108" e_length="169"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.746">
            <gDNA_intron_boundary i_start="45107" i_stop="45024" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.933">
            <gDNA_exon_boundary e_start="45023" e_stop="44547" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45276" stop="45108"/>
              <exon start="45023" stop="44547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45224" stop="45108"/>
              <exon start="45023" stop="44966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGTTGGAATAGATGGGTGGGTGTAAGCAATCACCTGATGCATGCAACAAAAAAACTTGTCGTGGGCACGAAGTCGATATCATGCACTTCTCAATTGGAAATGCTATCCCTGGCAGATTGTATGGTGGAAACCCAGTCGACAACAGAGATGGTAATGGGGGAGACAG : ATTTGGTCATCTAGTCGATTTATATGCTTGGAGCCCACACTGTATGAATTTGGATGGGGTTAGTTCTACAGGTAAGAATGTCATTCGAGTTGTTGGCACTCAAACTCTGGAACGTGTACTAGAGTATTATACTGATCACCTATCAATTAATACTTGGATCTTGATTGTCCTTCGTAAATGGGGATAGAAGCATATGGAGAAGAGGAATAGAAAGAAAAATTTGACTGATGCAAGTACCGAGGTTACAAAATTTACAGCTGACCTTAATACTTGTGGTTCATTTTTGCGGATCTATAACAGTAACCATGTAGGGTTGTTTCTTGGTTGTTGTTTTGATCTCTTTTATTTCATTGGAACTTACCATGCACCCAAAGACTTGGTGTCTGTTCTATGAGATGCAACTAAAAAAGAAATTACATTTTAATGAATTATATATATAGCATATAAATTGAATGATTGAAAAAAAATATCAGATCG</gDNA_template>
            <first_frame> N  C  W  N  R  W  V  G  V  S  N  H  L  M  H  A  T  K  K  L  V  V  G  T  K  S  I  S  C  T  S  Q  L  E  M  L  S  L  A  D  C  M  V  E  T  Q  S  T  T  E  M  V  M  G  E  T   : D  L  V  I  *  S  I  Y  M  L  G  A  H  T  V  *  I  W  M  G  L  V  L  Q  V  R  M  S  F  E  L  L  A  L  K  L  W  N  V  Y  *  S  I  I  L  I  T  Y  Q  L  I  L  G  S  *  L  S  F  V  N  G  D  R  S  I  W  R  R  G  I  E  R  K  I  *  L  M  Q  V  P  R  L  Q  N  L  Q  L  T  L  I  L  V  V  H  F  C  G  S  I  T  V  T  M  *  G  C  F  L  V  V  V  L  I  S  F  I  S  L  E  L  T  M  H  P  K  T  W  C  L  F  Y  E  M  Q  L  K  K  K  L  H  F  N  E  L  Y  I  *  H  I  N  *  M  I  E  K  K  Y  Q  I  </first_frame>
            <second_frame>  I  V  G  I  D  G  W  V  *  A  I  T  *  C  M  Q  Q  K  N  L  S  W  A  R  S  R  Y  H  A  L  L  N  W  K  C  Y  P  W  Q  I  V  W  W  K  P  S  R  Q  Q  R  W  *  W  G  R  Q  :  I  W  S  S  S  R  F  I  C  L  E  P  T  L  Y  E  F  G  W  G  *  F  Y  R  *  E  C  H  S  S  C  W  H  S  N  S  G  T  C  T  R  V  L  Y  *  S  P  I  N  *  Y  L  D  L  D  C  P  S  *  M  G  I  E  A  Y  G  E  E  E  *  K  E  K  F  D  *  C  K  Y  R  G  Y  K  I  Y  S  *  P  *  Y  L  W  F  I  F  A  D  L  *  Q  *  P  C  R  V  V  S  W  L  L  F  *  S  L  L  F  H  W  N  L  P  C  T  Q  R  L  G  V  C  S  M  R  C  N  *  K  R  N  Y  I  L  M  N  Y  I  Y  S  I  *  I  E  *  L  K  K  N  I  R  S </second_frame>
            <third_frame>   L  L  E  *  M  G  G  C  K  Q  S  P  D  A  C  N  K  K  T  C  R  G  H  E  V  D  I  M  H  F  S  I  G  N  A  I  P  G  R  L  Y  G  G  N  P  V  D  N  R  D  G  N  G  G  D  R :   F  G  H  L  V  D  L  Y  A  W  S  P  H  C  M  N  L  D  G  V  S  S  T  G  K  N  V  I  R  V  V  G  T  Q  T  L  E  R  V  L  E  Y  Y  T  D  H  L  S  I  N  T  W  I  L  I  V  L  R  K  W  G  *  K  H  M  E  K  R  N  R  K  K  N  L  T  D  A  S  T  E  V  T  K  F  T  A  D  L  N  T  C  G  S  F  L  R  I  Y  N  S  N  H  V  G  L  F  L  G  C  C  F  D  L  F  Y  F  I  G  T  Y  H  A  P  K  D  L  V  S  V  L  *  D  A  T  K  K  E  I  T  F  *  *  I  I  Y  I  A  Y  K  L  N  D  *  K  K  I  S  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45262" stop="45108"/>
                    <exon start="45023" stop="44837"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGGCKQSPDACNKKTCRGHEVDIMHFSIGNAIPGRLYGGNPVDNRDGNGGDRFGHLVDLYAWSPHCMNLDGVSSTGKNVIRVVGTQTLERVLEYYTDHLSINTWILIVLRKWG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44836" stop="44630"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHMEKRNRKKNLTDASTEVTKFTADLNTCGSFLRIYNSNHVGLFLGCCFDLFYFIGTYHAPKDLVSVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="53303" PGL_stop="52448"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53303" e_stop="53163"/>
            <exon e_start="53057" e_stop="52953"/>
            <exon e_start="52864" e_stop="52448"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.955" e_score="0.990"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53303" e_stop="53163" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.993">
            <gDNA_intron_boundary i_start="53162" i_stop="53058" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="53057" e_stop="52953" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.955">
            <gDNA_intron_boundary i_start="52952" i_stop="52865" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="52864" e_stop="52448" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53303" stop="53163"/>
              <exon start="53057" stop="52953"/>
              <exon start="52864" stop="52448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343867" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGAATCCTCATGATCTGCAACTATTTCGAGAACAATCAAATCCGTCAAACTCATCAGGACATGTACCCCCCGCCGTTCTTATGGATAAGCAGGAAGTGCAATGCCAATCCTTAGAGCCTGGACGATTCCACAACTTG : ATTGGAGCTGAGATCCGAGGAAAAGTCGATGGAGCATTTGACTCTGGTTATCTAATGACTGCGATTGTTAATGGAAAGATCTTTCGAGGTGTTCTGTTTGCTCCG : GCACCTGATCTAGTACCACGAGGACCCGTGCTTGGTCATAATCCTTCACCCTCTCCGGGACATATTGGTGTCAACTACGCGAATCATATAAGTCTGGGATGTCGAAGGCAACCTCAGCAGCAGCAGTTGGTGCAACTGCAAGTTCCAGAACTCGGACGACATAGCATAGGTAAAGTACCAATTAGAAGATCAACATCATCGGTGATGAGATCATCTCATCAACTAGACAAGGATACACAGAAAAGAAGTGAACTTGAAGGAGTGGTGCTCACACTAGGAGGTCCAGGATGTGGCAATGCAAAAACTTAAATTAATGATAATAACAGAGAATTAGAAAGTCTCATGAGTGTGTGTTTTTGTACATGCTAATTAAGGTAGATATATTATTGGATCCATTCTCTATGTATTCCTTTCAAT</gDNA_template>
            <first_frame> A  R  N  P  H  D  L  Q  L  F  R  E  Q  S  N  P  S  N  S  S  G  H  V  P  P  A  V  L  M  D  K  Q  E  V  Q  C  Q  S  L  E  P  G  R  F  H  N  L  :  I  G  A  E  I  R  G  K  V  D  G  A  F  D  S  G  Y  L  M  T  A  I  V  N  G  K  I  F  R  G  V  L  F  A  P  :  A  P  D  L  V  P  R  G  P  V  L  G  H  N  P  S  P  S  P  G  H  I  G  V  N  Y  A  N  H  I  S  L  G  C  R  R  Q  P  Q  Q  Q  Q  L  V  Q  L  Q  V  P  E  L  G  R  H  S  I  G  K  V  P  I  R  R  S  T  S  S  V  M  R  S  S  H  Q  L  D  K  D  T  Q  K  R  S  E  L  E  G  V  V  L  T  L  G  G  P  G  C  G  N  A  K  T  *  I  N  D  N  N  R  E  L  E  S  L  M  S  V  C  F  C  T  C  *  L  R  *  I  Y  Y  W  I  H  S  L  C  I  P  F  N </first_frame>
            <second_frame>  Q  G  I  L  M  I  C  N  Y  F  E  N  N  Q  I  R  Q  T  H  Q  D  M  Y  P  P  P  F  L  W  I  S  R  K  C  N  A  N  P  *  S  L  D  D  S  T  T  * :   L  E  L  R  S  E  E  K  S  M  E  H  L  T  L  V  I  *  *  L  R  L  L  M  E  R  S  F  E  V  F  C  L  L  R :   H  L  I  *  Y  H  E  D  P  C  L  V  I  I  L  H  P  L  R  D  I  L  V  S  T  T  R  I  I  *  V  W  D  V  E  G  N  L  S  S  S  S  W  C  N  C  K  F  Q  N  S  D  D  I  A  *  V  K  Y  Q  L  E  D  Q  H  H  R  *  *  D  H  L  I  N  *  T  R  I  H  R  K  E  V  N  L  K  E  W  C  S  H  *  E  V  Q  D  V  A  M  Q  K  L  K  L  M  I  I  T  E  N  *  K  V  S  *  V  C  V  F  V  H  A  N  *  G  R  Y  I  I  G  S  I  L  Y  V  F  L  S   </second_frame>
            <third_frame>   K  E  S  S  *  S  A  T  I  S  R  T  I  K  S  V  K  L  I  R  T  C  T  P  R  R  S  Y  G  *  A  G  S  A  M  P  I  L  R  A  W  T  I  P  Q  L   : D  W  S  *  D  P  R  K  S  R  W  S  I  *  L  W  L  S  N  D  C  D  C  *  W  K  D  L  S  R  C  S  V  C  S   : G  T  *  S  S  T  T  R  T  R  A  W  S  *  S  F  T  L  S  G  T  Y  W  C  Q  L  R  E  S  Y  K  S  G  M  S  K  A  T  S  A  A  A  V  G  A  T  A  S  S  R  T  R  T  T  *  H  R  *  S  T  N  *  K  I  N  I  I  G  D  E  I  I  S  S  T  R  Q  G  Y  T  E  K  K  *  T  *  R  S  G  A  H  T  R  R  S  R  M  W  Q  C  K  N  L  N  *  *  *  *  Q  R  I  R  K  S  H  E  C  V  F  L  Y  M  L  I  K  V  D  I  L  L  D  P  F  S  M  Y  S  F  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53303" stop="53163"/>
                    <exon start="53057" stop="52953"/>
                    <exon start="52864" stop="52556"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARNPHDLQLFREQSNPSNSSGHVPPAVLMDKQEVQCQSLEPGRFHNLIGAEIRGKVDGAFDSGYLMTAIVNGKIFRGVLFAPAPDLVPRGPVLGHNPSPSPGHIGVNYANHISLGCRRQPQQQQLVQLQVPELGRHSIGKVPIRRSTSSVMRSSHQLDKDTQKRSELEGVVLTLGGPGCGNAKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="55851" PGL_stop="53577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55851" e_stop="55771"/>
            <exon e_start="54670" e_stop="54511"/>
            <exon e_start="54420" e_stop="54355"/>
            <exon e_start="54224" e_stop="54058"/>
            <exon e_start="53980" e_stop="53824"/>
            <exon e_start="53736" e_stop="53687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55851" e_stop="55771" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55770" i_stop="54671" i_length="1100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54670" e_stop="54511" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="54510" i_stop="54421" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54420" e_stop="54355" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54354" i_stop="54225" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54224" e_stop="54058" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54057" i_stop="53981" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53980" e_stop="53824" e_length="157"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53823" i_stop="53737" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="0.960">
            <gDNA_exon_boundary e_start="53736" e_stop="53687" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55851" stop="55771"/>
              <exon start="54670" stop="54511"/>
              <exon start="54420" stop="54355"/>
              <exon start="54224" stop="54058"/>
              <exon start="53980" stop="53824"/>
              <exon start="53736" stop="53687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55851" stop="55771"/>
              <exon start="54670" stop="54511"/>
              <exon start="54420" stop="54355"/>
              <exon start="54224" stop="54058"/>
              <exon start="53980" stop="53824"/>
              <exon start="53736" stop="53716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341719" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAAAGAAGACAGAGCAAATAAAAATGGGATCTTTAGGTGGTGAAGTATCAGTATCATTATTACAGAAGAAGAAACCAAT : GTGGTCTTCTCCTGAAGTGAGGGGTGAAATGCCTGTTCCTAGGGATAGCCACAGTGCTGTTGCGATTGGTAATAGGCTTTTTATATATGGCGGAGATTGTGGTGACCGATATCAAGGCGATGTCGATGTTCTTGATATGGATACACTAATGTGGTCAAAG : CTGGATGTTCTTGGACCGTCACCTGATGCTCGAGCCGGTCATGCCTCTGTGAATTTTGGGTCAAAG : GTATACGTGATTGGTGGAGTTGGAGACAAGAAATACTACAATGATGTTTGGGTTCTTGATGTGATAAATTCTTCATGGACTCAGCTTGATGTGACGGGCCAAAAACCACAGGGGCGATTTTCTCATACTGCTGCTTCCCGGAACACGGATATTGTAATCTACGGAGG : GTGCGGCGAGGATGAGCGACCACTCAATGAGCTACTTATCTTGCAGTTTGGAGTAGAATATCCTAATGGGACTAGCAGCTTGTCTGGTGGCAGGGTTTCTGGGAATACAAGTCATTATGATAAGAAAAGATTTCTGAAAGAAAGAGACAATAGCTCG : GAAGCTATATGTAGGGGAAAGAAGGAAGATATACAAACGACGGGATCTCA</gDNA_template>
            <first_frame> I  K  E  D  R  A  N  K  N  G  I  F  R  W  *  S  I  S  I  I  I  T  E  E  E  T  N  :  V  V  F  S  *  S  E  G  *  N  A  C  S  *  G  *  P  Q  C  C  C  D  W  *  *  A  F  Y  I  W  R  R  L  W  *  P  I  S  R  R  C  R  C  S  *  Y  G  Y  T  N  V  V  K   : A  G  C  S  W  T  V  T  *  C  S  S  R  S  C  L  C  E  F  W  V  K   : G  I  R  D  W  W  S  W  R  Q  E  I  L  Q  *  C  L  G  S  *  C  D  K  F  F  M  D  S  A  *  C  D  G  P  K  T  T  G  A  I  F  S  Y  C  C  F  P  E  H  G  Y  C  N  L  R  R  :  V  R  R  G  *  A  T  T  Q  *  A  T  Y  L  A  V  W  S  R  I  S  *  W  D  *  Q  L  V  W  W  Q  G  F  W  E  Y  K  S  L  *  *  E  K  I  S  E  R  K  R  Q  *  L   : G  S  Y  M  *  G  K  E  G  R  Y  T  N  D  G  I  S </first_frame>
            <second_frame>  L  K  K  T  E  Q  I  K  M  G  S  L  G  G  E  V  S  V  S  L  L  Q  K  K  K  P  M :   W  S  S  P  E  V  R  G  E  M  P  V  P  R  D  S  H  S  A  V  A  I  G  N  R  L  F  I  Y  G  G  D  C  G  D  R  Y  Q  G  D  V  D  V  L  D  M  D  T  L  M  W  S  K  :  L  D  V  L  G  P  S  P  D  A  R  A  G  H  A  S  V  N  F  G  S  K  :  V  Y  V  I  G  G  V  G  D  K  K  Y  Y  N  D  V  W  V  L  D  V  I  N  S  S  W  T  Q  L  D  V  T  G  Q  K  P  Q  G  R  F  S  H  T  A  A  S  R  N  T  D  I  V  I  Y  G  G :   C  G  E  D  E  R  P  L  N  E  L  L  I  L  Q  F  G  V  E  Y  P  N  G  T  S  S  L  S  G  G  R  V  S  G  N  T  S  H  Y  D  K  K  R  F  L  K  E  R  D  N  S  S  :  E  A  I  C  R  G  K  K  E  D  I  Q  T  T  G  S   </second_frame>
            <third_frame>   *  R  R  Q  S  K  *  K  W  D  L  *  V  V  K  Y  Q  Y  H  Y  Y  R  R  R  N  Q   : C  G  L  L  L  K  *  G  V  K  C  L  F  L  G  I  A  T  V  L  L  R  L  V  I  G  F  L  Y  M  A  E  I  V  V  T  D  I  K  A  M  S  M  F  L  I  W  I  H  *  C  G  Q  S :   W  M  F  L  D  R  H  L  M  L  E  P  V  M  P  L  *  I  L  G  Q  R :   Y  T  *  L  V  E  L  E  T  R  N  T  T  M  M  F  G  F  L  M  *  *  I  L  H  G  L  S  L  M  *  R  A  K  N  H  R  G  D  F  L  I  L  L  L  P  G  T  R  I  L  *  S  T  E   : G  A  A  R  M  S  D  H  S  M  S  Y  L  S  C  S  L  E  *  N  I  L  M  G  L  A  A  C  L  V  A  G  F  L  G  I  Q  V  I  M  I  R  K  D  F  *  K  K  E  T  I  A  R :   K  L  Y  V  G  E  R  R  K  I  Y  K  R  R  D  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55850" stop="55771"/>
                    <exon start="54670" stop="54511"/>
                    <exon start="54420" stop="54355"/>
                    <exon start="54224" stop="54058"/>
                    <exon start="53980" stop="53824"/>
                    <exon start="53736" stop="53689"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKTEQIKMGSLGGEVSVSLLQKKKPMWSSPEVRGEMPVPRDSHSAVAIGNRLFIYGGDCGDRYQGDVDVLDMDTLMWSKLDVLGPSPDARAGHASVNFGSKVYVIGGVGDKKYYNDVWVLDVINSSWTQLDVTGQKPQGRFSHTAASRNTDIVIYGGCGEDERPLNELLILQFGVEYPNGTSSLSGGRVSGNTSHYDKKRFLKERDNSSEAICRGKKEDIQTTGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53967" e_stop="53577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="53967" e_stop="53577" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53967" stop="53577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320799" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCGACCACTCAATGAGCTACTTATCTTGCAGTTTGGAGTAGAATATCCTAATGGGACTAGCAGCTTGTCTGGTGGCAGGGTTTCTGGGAATACAAGTCATTATGATAAGAAAAGATTTCTGAAAGAAAGAGACAATAGCTCGGTATACTAGAGCGAGAACTTGATTCCTTTCTCATGAATTTAAACAATTCAAGATCATTTTTCTGATTCGTATAAATTGATTTGGCAGGAAGCTATATGTAGGGGAAAGAAGGAAGATATACAAACGACGGGATCTCAAGAACTTGAGTTCGTATCAAAAGCAGCTTTTCGATTTAGTTCTGGTAGGTTATAAAATGATTTTGTCATGCTAGCAGCCAGTAGTTTCAAGACATGAACTAAGCATGACT</gDNA_template>
            <first_frame> E  R  P  L  N  E  L  L  I  L  Q  F  G  V  E  Y  P  N  G  T  S  S  L  S  G  G  R  V  S  G  N  T  S  H  Y  D  K  K  R  F  L  K  E  R  D  N  S  S  V  Y  *  S  E  N  L  I  P  F  S  *  I  *  T  I  Q  D  H  F  S  D  S  Y  K  L  I  W  Q  E  A  I  C  R  G  K  K  E  D  I  Q  T  T  G  S  Q  E  L  E  F  V  S  K  A  A  F  R  F  S  S  G  R  L  *  N  D  F  V  M  L  A  A  S  S  F  K  T  *  T  K  H  D  </first_frame>
            <second_frame>  S  D  H  S  M  S  Y  L  S  C  S  L  E  *  N  I  L  M  G  L  A  A  C  L  V  A  G  F  L  G  I  Q  V  I  M  I  R  K  D  F  *  K  K  E  T  I  A  R  Y  T  R  A  R  T  *  F  L  S  H  E  F  K  Q  F  K  I  I  F  L  I  R  I  N  *  F  G  R  K  L  Y  V  G  E  R  R  K  I  Y  K  R  R  D  L  K  N  L  S  S  Y  Q  K  Q  L  F  D  L  V  L  V  G  Y  K  M  I  L  S  C  *  Q  P  V  V  S  R  H  E  L  S  M  T </second_frame>
            <third_frame>   A  T  T  Q  *  A  T  Y  L  A  V  W  S  R  I  S  *  W  D  *  Q  L  V  W  W  Q  G  F  W  E  Y  K  S  L  *  *  E  K  I  S  E  R  K  R  Q  *  L  G  I  L  E  R  E  L  D  S  F  L  M  N  L  N  N  S  R  S  F  F  *  F  V  *  I  D  L  A  G  S  Y  M  *  G  K  E  G  R  Y  T  N  D  G  I  S  R  T  *  V  R  I  K  S  S  F  S  I  *  F  W  *  V  I  K  *  F  C  H  A  S  S  Q  *  F  Q  D  M  N  *  A  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0005L21.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="71127" PGL_stop="66921"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71127" e_stop="70787"/>
            <exon e_start="69515" e_stop="69308"/>
            <exon e_start="69202" e_stop="69139"/>
            <exon e_start="68217" e_stop="68093"/>
            <exon e_start="67901" e_stop="67812"/>
            <exon e_start="67728" e_stop="67660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.941" e_score="0.997"/>
          <exon-intron don_prob="0.806" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="71127" e_stop="70787" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.941">
            <gDNA_intron_boundary i_start="70786" i_stop="69516" i_length="1271"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69515" e_stop="69308" e_length="208"/>
          </exon>
          <intron i_serial="2" don_prob="0.806" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69307" i_stop="69203" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69202" e_stop="69139" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.851" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69138" i_stop="68218" i_length="921"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68217" e_stop="68093" e_length="125"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68092" i_stop="67902" i_length="191"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67901" e_stop="67812" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67811" i_stop="67729" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="67728" e_stop="67660" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71127" stop="70787"/>
              <exon start="69515" stop="69308"/>
              <exon start="69202" stop="69139"/>
              <exon start="68217" stop="68093"/>
              <exon start="67901" stop="67835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71105" stop="70787"/>
              <exon start="69515" stop="69308"/>
              <exon start="69202" stop="69139"/>
              <exon start="68217" stop="68093"/>
              <exon start="67901" stop="67812"/>
              <exon start="67728" stop="67720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71089" stop="70787"/>
              <exon start="69515" stop="69308"/>
              <exon start="69202" stop="69139"/>
              <exon start="68217" stop="68188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70999" stop="70787"/>
              <exon start="69515" stop="69308"/>
              <exon start="69202" stop="69139"/>
              <exon start="68217" stop="68093"/>
              <exon start="67901" stop="67812"/>
              <exon start="67728" stop="67660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70999" stop="70787"/>
              <exon start="69515" stop="69308"/>
              <exon start="69202" stop="69139"/>
              <exon start="68217" stop="68093"/>
              <exon start="67901" stop="67812"/>
              <exon start="67728" stop="67708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70999" stop="70787"/>
              <exon start="69515" stop="69308"/>
              <exon start="69202" stop="69139"/>
              <exon start="68217" stop="68167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441975" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCATTTGTGATTAATCCGCCGTCTCTCTATTCCTTTTGAAATTTCCACATATTCACTGACCACACATCTCTCCAATCGAATGACCCAAATCCAAACCCAAACCCAAACCCTAGGATCTCGCCGGAGCTGAAGACTGTATGAGTAGTCACCGAGAAGAAATACCGTGCTTCAAAGCAGTGAAGCAGTTTAATAAACAATGGTGGTTGTCGTTTCTCACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGTTCCTCTTACCTCCTCCTCTTCTTTTAGAATACGAACCTTAACTCCTCGCTTTCGATCGTTAACTCCTCGCTTTACCACGCAAAG : GCTCGGAAGTCTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGAACATTTGTGGACACTCTCTTGACAACATTGCCA : GTCTTATCAGAGGAGGAGCAGAACATTATTGCTGCGACTCCTGCTCATCCAGCAGGGTTATACG : CTTTATATGCTAGTTGCTTGGCTGGGTATATGGTGGAACAACTTTGGAATTTCGCCTCACCTGCTGCCATTGCGTTGATTCATCCTAGTCTTCTTCCTGTGGCACTCATGGGTTTCCTCGCTAAG : CTCGCTGTAATTGGTGGAGGTCCTCTGGTTGGAAAACTTATGGATCACTTTCCTCGGGTTCCTGCATATAATTGTCTATATATAGTCCAG : ACAGCTGCCCAGTTAATGTCTGTTGGAATGATTATACATGGTCATACTCTTCACCCAACGTCTGCATCA</gDNA_template>
            <first_frame> I  H  L  *  L  I  R  R  L  S  I  P  F  E  I  S  T  Y  S  L  T  T  H  L  S  N  R  M  T  Q  I  Q  T  Q  T  Q  T  L  G  S  R  R  S  *  R  L  Y  E  *  S  P  R  R  N  T  V  L  Q  S  S  E  A  V  *  *  T  M  V  V  V  V  S  H  A  Q  P  W  S  A  F  L  T  L  R  Q  V  P  L  T  S  S  S  S  F  R  I  R  T  L  T  P  R  F  R  S  L  T  P  R  F  T  T  Q  R :   L  G  S  L  N  T  R  C  S  I  N  T  D  V  L  T  D  I  A  T  D  Q  E  V  R  D  D  V  A  T  D  D  C  G  C  T  I  P  V  L  H  L  K  S  D  I  L  E  T  E  A  L  N  L  L  A  K  G  T  F  V  D  T  L  L  T  T  L  P  :  V  L  S  E  E  E  Q  N  I  I  A  A  T  P  A  H  P  A  G  L  Y   : A  L  Y  A  S  C  L  A  G  Y  M  V  E  Q  L  W  N  F  A  S  P  A  A  I  A  L  I  H  P  S  L  L  P  V  A  L  M  G  F  L  A  K  :  L  A  V  I  G  G  G  P  L  V  G  K  L  M  D  H  F  P  R  V  P  A  Y  N  C  L  Y  I  V  Q  :  T  A  A  Q  L  M  S  V  G  M  I  I  H  G  H  T  L  H  P  T  S  A  S </first_frame>
            <second_frame>  S  I  C  D  *  S  A  V  S  L  F  L  L  K  F  P  H  I  H  *  P  H  I  S  P  I  E  *  P  K  S  K  P  K  P  K  P  *  D  L  A  G  A  E  D  C  M  S  S  H  R  E  E  I  P  C  F  K  A  V  K  Q  F  N  K  Q  W  W  L  S  F  L  T  L  S  L  G  P  P  S  L  L  S  V  K  F  L  L  P  P  P  L  L  L  E  Y  E  P  *  L  L  A  F  D  R  *  L  L  A  L  P  R  K   : G  S  E  V  L  T  L  D  A  P  *  I  P  T  S  *  L  T  L  Q  L  I  K  R  F  G  M  M  L  Q  L  M  I  V  A  V  Q  Y  L  F  F  I  S  N  L  I  F  W  K  L  K  H  *  I  C  *  P  R  E  H  L  W  T  L  S  *  Q  H  C  Q :   S  Y  Q  R  R  S  R  T  L  L  L  R  L  L  L  I  Q  Q  G  Y  T  :  L  Y  M  L  V  A  W  L  G  I  W  W  N  N  F  G  I  S  P  H  L  L  P  L  R  *  F  I  L  V  F  F  L  W  H  S  W  V  S  S  L  S :   S  L  *  L  V  E  V  L  W  L  E  N  L  W  I  T  F  L  G  F  L  H  I  I  V  Y  I  *  S  R :   Q  L  P  S  *  C  L  L  E  *  L  Y  M  V  I  L  F  T  Q  R  L  H   </second_frame>
            <third_frame>   P  F  V  I  N  P  P  S  L  Y  S  F  *  N  F  H  I  F  T  D  H  T  S  L  Q  S  N  D  P  N  P  N  P  N  P  N  P  R  I  S  P  E  L  K  T  V  *  V  V  T  E  K  K  Y  R  A  S  K  Q  *  S  S  L  I  N  N  G  G  C  R  F  S  R  S  A  L  V  R  L  P  Y  S  P  S  S  S  S  Y  L  L  L  F  F  *  N  T  N  L  N  S  S  L  S  I  V  N  S  S  L  Y  H  A  K  :  A  R  K  S  *  H  *  M  L  H  K  Y  R  R  L  N  *  H  C  N  *  S  R  G  S  G  *  C  C  N  *  *  L  W  L  Y  N  T  C  S  S  S  Q  I  *  Y  S  G  N  *  S  T  K  S  A  S  Q  G  N  I  C  G  H  S  L  D  N  I  A   : S  L  I  R  G  G  A  E  H  Y  C  C  D  S  C  S  S  S  R  V  I  R :   F  I  C  *  L  L  G  W  V  Y  G  G  T  T  L  E  F  R  L  T  C  C  H  C  V  D  S  S  *  S  S  S  C  G  T  H  G  F  P  R  *   : A  R  C  N  W  W  R  S  S  G  W  K  T  Y  G  S  L  S  S  G  S  C  I  *  L  S  I  Y  S  P   : D  S  C  P  V  N  V  C  W  N  D  Y  T  W  S  Y  S  S  P  N  V  C  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70932" stop="70787"/>
                    <exon start="69515" stop="69308"/>
                    <exon start="69202" stop="69139"/>
                    <exon start="68217" stop="68093"/>
                    <exon start="67901" stop="67812"/>
                    <exon start="67728" stop="67660"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMVVVVSHAQPWSAFLTLRQVPLTSSSSFRIRTLTPRFRSLTPRFTTQRLGSLNTRCSINTDVLTDIATDQEVRDDVATDDCGCTIPVLHLKSDILETEALNLLAKGTFVDTLLTTLPVLSEEEQNIIAATPAHPAGLYALYASCLAGYMVEQLWNFASPAAIALIHPSLLPVALMGFLAKLAVIGGGPLVGKLMDHFPRVPAYNCLYIVQTAAQLMSVGMIIHGHTLHPTSAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71127" e_stop="70787"/>
            <exon e_start="69515" e_stop="69308"/>
            <exon e_start="69202" e_stop="69139"/>
            <exon e_start="68217" e_stop="68093"/>
            <exon e_start="67901" e_stop="67812"/>
            <exon e_start="67619" e_stop="67552"/>
            <exon e_start="67457" e_stop="67383"/>
            <exon e_start="67144" e_stop="67043"/>
            <exon e_start="66955" e_stop="66921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.941" e_score="0.997"/>
          <exon-intron don_prob="0.806" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.998" e_score="0.971"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.000" e_score="0.951"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="71127" e_stop="70787" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.941">
            <gDNA_intron_boundary i_start="70786" i_stop="69516" i_length="1271"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69515" e_stop="69308" e_length="208"/>
          </exon>
          <intron i_serial="2" don_prob="0.806" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69307" i_stop="69203" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69202" e_stop="69139" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.851" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69138" i_stop="68218" i_length="921"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68217" e_stop="68093" e_length="125"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68092" i_stop="67902" i_length="191"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67901" e_stop="67812" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.986">
            <gDNA_intron_boundary i_start="67811" i_stop="67620" i_length="192"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="67619" e_stop="67552" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.874" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67551" i_stop="67458" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67457" e_stop="67383" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67382" i_stop="67145" i_length="238"/>
          </intron>
          <exon e_serial="8" e_score="0.951">
            <gDNA_exon_boundary e_start="67144" e_stop="67043" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.936" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67042" i_stop="66956" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="0.971">
            <gDNA_exon_boundary e_start="66955" e_stop="66921" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71127" stop="70787"/>
              <exon start="69515" stop="69308"/>
              <exon start="69202" stop="69139"/>
              <exon start="68217" stop="68093"/>
              <exon start="67901" stop="67835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71089" stop="70787"/>
              <exon start="69515" stop="69308"/>
              <exon start="69202" stop="69139"/>
              <exon start="68217" stop="68188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70999" stop="70787"/>
              <exon start="69515" stop="69308"/>
              <exon start="69202" stop="69139"/>
              <exon start="68217" stop="68167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69400" stop="69308"/>
              <exon start="69202" stop="69139"/>
              <exon start="68217" stop="68093"/>
              <exon start="67901" stop="67812"/>
              <exon start="67619" stop="67552"/>
              <exon start="67457" stop="67383"/>
              <exon start="67144" stop="67043"/>
              <exon start="66955" stop="66921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCATTTGTGATTAATCCGCCGTCTCTCTATTCCTTTTGAAATTTCCACATATTCACTGACCACACATCTCTCCAATCGAATGACCCAAATCCAAACCCAAACCCAAACCCTAGGATCTCGCCGGAGCTGAAGACTGTATGAGTAGTCACCGAGAAGAAATACCGTGCTTCAAAGCAGTGAAGCAGTTTAATAAACAATGGTGGTTGTCGTTTCTCACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGTTCCTCTTACCTCCTCCTCTTCTTTTAGAATACGAACCTTAACTCCTCGCTTTCGATCGTTAACTCCTCGCTTTACCACGCAAAG : GCTCGGAAGTCTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGAACATTTGTGGACACTCTCTTGACAACATTGCCA : GTCTTATCAGAGGAGGAGCAGAACATTATTGCTGCGACTCCTGCTCATCCAGCAGGGTTATACG : CTTTATATGCTAGTTGCTTGGCTGGGTATATGGTGGAACAACTTTGGAATTTCGCCTCACCTGCTGCCATTGCGTTGATTCATCCTAGTCTTCTTCCTGTGGCACTCATGGGTTTCCTCGCTAAG : CTCGCTGTAATTGGTGGAGGTCCTCTGGTTGGAAAACTTATGGATCACTTTCCTCGGGTTCCTGCATATAATTGTCTATATATAGTCCAG : TGGGAGCTGTTGAGAGGCTATCTGGGTTGGCATTGGGGGTTGCAGTGGAGCGTGATTGGGTTGTTTTG : TTAGCTGGAACCAATCGCCCAGTTGCTCTTGCTCAAGCAAATGCTGTTCTAAGCCGTATTAACCTTTTATGCGAG : ATTGTTGGAGCAGCATTATTTGGCATTCTTCTCGCTAAATATGAACTGGTGCTATGCTTAAAAATTGCTGCTGGTTTGATGATGGGGACACTTCCTATTGTG : GTATCTCTGACATGGCTAACCAACAAGCTTTCCTC</gDNA_template>
            <first_frame> I  H  L  *  L  I  R  R  L  S  I  P  F  E  I  S  T  Y  S  L  T  T  H  L  S  N  R  M  T  Q  I  Q  T  Q  T  Q  T  L  G  S  R  R  S  *  R  L  Y  E  *  S  P  R  R  N  T  V  L  Q  S  S  E  A  V  *  *  T  M  V  V  V  V  S  H  A  Q  P  W  S  A  F  L  T  L  R  Q  V  P  L  T  S  S  S  S  F  R  I  R  T  L  T  P  R  F  R  S  L  T  P  R  F  T  T  Q  R :   L  G  S  L  N  T  R  C  S  I  N  T  D  V  L  T  D  I  A  T  D  Q  E  V  R  D  D  V  A  T  D  D  C  G  C  T  I  P  V  L  H  L  K  S  D  I  L  E  T  E  A  L  N  L  L  A  K  G  T  F  V  D  T  L  L  T  T  L  P  :  V  L  S  E  E  E  Q  N  I  I  A  A  T  P  A  H  P  A  G  L  Y   : A  L  Y  A  S  C  L  A  G  Y  M  V  E  Q  L  W  N  F  A  S  P  A  A  I  A  L  I  H  P  S  L  L  P  V  A  L  M  G  F  L  A  K  :  L  A  V  I  G  G  G  P  L  V  G  K  L  M  D  H  F  P  R  V  P  A  Y  N  C  L  Y  I  V  Q  :  W  E  L  L  R  G  Y  L  G  W  H  W  G  L  Q  W  S  V  I  G  L  F  C :   *  L  E  P  I  A  Q  L  L  L  L  K  Q  M  L  F  *  A  V  L  T  F  Y  A  R :   L  L  E  Q  H  Y  L  A  F  F  S  L  N  M  N  W  C  Y  A  *  K  L  L  L  V  *  *  W  G  H  F  L  L  W :   Y  L  *  H  G  *  P  T  S  F  P  </first_frame>
            <second_frame>  S  I  C  D  *  S  A  V  S  L  F  L  L  K  F  P  H  I  H  *  P  H  I  S  P  I  E  *  P  K  S  K  P  K  P  K  P  *  D  L  A  G  A  E  D  C  M  S  S  H  R  E  E  I  P  C  F  K  A  V  K  Q  F  N  K  Q  W  W  L  S  F  L  T  L  S  L  G  P  P  S  L  L  S  V  K  F  L  L  P  P  P  L  L  L  E  Y  E  P  *  L  L  A  F  D  R  *  L  L  A  L  P  R  K   : G  S  E  V  L  T  L  D  A  P  *  I  P  T  S  *  L  T  L  Q  L  I  K  R  F  G  M  M  L  Q  L  M  I  V  A  V  Q  Y  L  F  F  I  S  N  L  I  F  W  K  L  K  H  *  I  C  *  P  R  E  H  L  W  T  L  S  *  Q  H  C  Q :   S  Y  Q  R  R  S  R  T  L  L  L  R  L  L  L  I  Q  Q  G  Y  T  :  L  Y  M  L  V  A  W  L  G  I  W  W  N  N  F  G  I  S  P  H  L  L  P  L  R  *  F  I  L  V  F  F  L  W  H  S  W  V  S  S  L  S :   S  L  *  L  V  E  V  L  W  L  E  N  L  W  I  T  F  L  G  F  L  H  I  I  V  Y  I  *  S  S :   G  S  C  *  E  A  I  W  V  G  I  G  G  C  S  G  A  *  L  G  C  F   : V  S  W  N  Q  S  P  S  C  S  C  S  S  K  C  C  S  K  P  Y  *  P  F  M  R   : D  C  W  S  S  I  I  W  H  S  S  R  *  I  *  T  G  A  M  L  K  N  C  C  W  F  D  D  G  D  T  S  Y  C   : G  I  S  D  M  A  N  Q  Q  A  F  L </second_frame>
            <third_frame>   P  F  V  I  N  P  P  S  L  Y  S  F  *  N  F  H  I  F  T  D  H  T  S  L  Q  S  N  D  P  N  P  N  P  N  P  N  P  R  I  S  P  E  L  K  T  V  *  V  V  T  E  K  K  Y  R  A  S  K  Q  *  S  S  L  I  N  N  G  G  C  R  F  S  R  S  A  L  V  R  L  P  Y  S  P  S  S  S  S  Y  L  L  L  F  F  *  N  T  N  L  N  S  S  L  S  I  V  N  S  S  L  Y  H  A  K  :  A  R  K  S  *  H  *  M  L  H  K  Y  R  R  L  N  *  H  C  N  *  S  R  G  S  G  *  C  C  N  *  *  L  W  L  Y  N  T  C  S  S  S  Q  I  *  Y  S  G  N  *  S  T  K  S  A  S  Q  G  N  I  C  G  H  S  L  D  N  I  A   : S  L  I  R  G  G  A  E  H  Y  C  C  D  S  C  S  S  S  R  V  I  R :   F  I  C  *  L  L  G  W  V  Y  G  G  T  T  L  E  F  R  L  T  C  C  H  C  V  D  S  S  *  S  S  S  C  G  T  H  G  F  P  R  *   : A  R  C  N  W  W  R  S  S  G  W  K  T  Y  G  S  L  S  S  G  S  C  I  *  L  S  I  Y  S  P   : V  G  A  V  E  R  L  S  G  L  A  L  G  V  A  V  E  R  D  W  V  V  L  :  L  A  G  T  N  R  P  V  A  L  A  Q  A  N  A  V  L  S  R  I  N  L  L  C  E  :  I  V  G  A  A  L  F  G  I  L  L  A  K  Y  E  L  V  L  C  L  K  I  A  A  G  L  M  M  G  T  L  P  I  V  :  V  S  L  T  W  L  T  N  K  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70932" stop="70787"/>
                    <exon start="69515" stop="69308"/>
                    <exon start="69202" stop="69139"/>
                    <exon start="68217" stop="68093"/>
                    <exon start="67901" stop="67812"/>
                    <exon start="67619" stop="67552"/>
                    <exon start="67457" stop="67454"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMVVVVSHAQPWSAFLTLRQVPLTSSSSFRIRTLTPRFRSLTPRFTTQRLGSLNTRCSINTDVLTDIATDQEVRDDVATDDCGCTIPVLHLKSDILETEALNLLAKGTFVDTLLTTLPVLSEEEQNIIAATPAHPAGLYALYASCLAGYMVEQLWNFASPAAIALIHPSLLPVALMGFLAKLAVIGGGPLVGKLMDHFPRVPAYNCLYIVQWELLRGYLGWHWGLQWSVIGLFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="71098" e_stop="70820"/>
            <exon e_start="70403" e_stop="70389"/>
            <exon e_start="69515" e_stop="69308"/>
            <exon e_start="69202" e_stop="69139"/>
            <exon e_start="68217" e_stop="68093"/>
            <exon e_start="67901" e_stop="67812"/>
            <exon e_start="67619" e_stop="67552"/>
            <exon e_start="67457" e_stop="67383"/>
            <exon e_start="67144" e_stop="67043"/>
            <exon e_start="66955" e_stop="66921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.772" e_score="0.907"/>
          <exon-intron don_prob="0.000" acc_prob="0.941" e_score="0.667"/>
          <exon-intron don_prob="0.806" acc_prob="1.000" e_score="0.981"/>
          <exon-intron don_prob="0.851" acc_prob="0.000" e_score="0.969"/>
          <exon-intron don_prob="0.981" acc_prob="0.995" e_score="0.952"/>
          <exon-intron don_prob="0.900" acc_prob="0.986" e_score="0.956"/>
          <exon-intron don_prob="0.874" acc_prob="0.998" e_score="0.971"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.000" e_score="0.951"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="71098" e_stop="70820" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.772">
            <gDNA_intron_boundary i_start="70819" i_stop="70404" i_length="416"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="70403" e_stop="70389" e_length="15"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.941">
            <gDNA_intron_boundary i_start="70388" i_stop="69516" i_length="873"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="69515" e_stop="69308" e_length="208"/>
          </exon>
          <intron i_serial="3" don_prob="0.806" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69307" i_stop="69203" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="69202" e_stop="69139" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.851" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69138" i_stop="68218" i_length="921"/>
          </intron>
          <exon e_serial="5" e_score="0.952">
            <gDNA_exon_boundary e_start="68217" e_stop="68093" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68092" i_stop="67902" i_length="191"/>
          </intron>
          <exon e_serial="6" e_score="0.956">
            <gDNA_exon_boundary e_start="67901" e_stop="67812" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.986">
            <gDNA_intron_boundary i_start="67811" i_stop="67620" i_length="192"/>
          </intron>
          <exon e_serial="7" e_score="0.971">
            <gDNA_exon_boundary e_start="67619" e_stop="67552" e_length="68"/>
          </exon>
          <intron i_serial="7" don_prob="0.874" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67551" i_stop="67458" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67457" e_stop="67383" e_length="75"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67382" i_stop="67145" i_length="238"/>
          </intron>
          <exon e_serial="9" e_score="0.951">
            <gDNA_exon_boundary e_start="67144" e_stop="67043" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.936" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67042" i_stop="66956" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="0.971">
            <gDNA_exon_boundary e_start="66955" e_stop="66921" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71098" stop="70820"/>
              <exon start="70403" stop="70389"/>
              <exon start="69515" stop="69308"/>
              <exon start="69202" stop="69139"/>
              <exon start="68217" stop="68191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69400" stop="69308"/>
              <exon start="69202" stop="69139"/>
              <exon start="68217" stop="68093"/>
              <exon start="67901" stop="67812"/>
              <exon start="67619" stop="67552"/>
              <exon start="67457" stop="67383"/>
              <exon start="67144" stop="67043"/>
              <exon start="66955" stop="66921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTCCTTTTGAAATTTCCACATATTCACTGACCACACATCTCTCCAATCGAATGACCCAAATCCAAACCCAAACCCAAACCCTAGGATCTCGCCGGAGCTGAAGACTGTATGAGTAGTCACCGAGAAGAAATACCGTGCTTCAAAGCAGTGAAGCAGTTTAATAAACAATGGTGGTTGTCGTTTCTCACGCTCAGCCTTGGTCCGCCTTCCTTACTCTCCGTCAAGTTCCTCTTACCTCCTCCTCTTCTTTTAGAATACGAACCTTAACTCCTCGCTT : TACCTGTCGAGTAAG : GCTCGGAAGTCTTAACACTAGATGCTCCATAAATACCGACGTCTTAACTGACATTGCAACTGATCAAGAGGTTCGGGATGATGTTGCAACTGATGATTGTGGCTGTACAATACCTGTTCTTCATCTCAAATCTGATATTCTGGAAACTGAAGCACTAAATCTGCTAGCCAAGGGAACATTTGTGGACACTCTCTTGACAACATTGCCA : GTCTTATCAGAGGAGGAGCAGAACATTATTGCTGCGACTCCTGCTCATCCAGCAGGGTTATACG : CTTTATATGCTAGTTGCTTGGCTGGGTATATGGTGGAACAACTTTGGAATTTCGCCTCACCTGCTGCCATTGCGTTGATTCATCCTAGTCTTCTTCCTGTGGCACTCATGGGTTTCCTCGCTAAG : CTCGCTGTAATTGGTGGAGGTCCTCTGGTTGGAAAACTTATGGATCACTTTCCTCGGGTTCCTGCATATAATTGTCTATATATAGTCCAG : TGGGAGCTGTTGAGAGGCTATCTGGGTTGGCATTGGGGGTTGCAGTGGAGCGTGATTGGGTTGTTTTG : TTAGCTGGAACCAATCGCCCAGTTGCTCTTGCTCAAGCAAATGCTGTTCTAAGCCGTATTAACCTTTTATGCGAG : ATTGTTGGAGCAGCATTATTTGGCATTCTTCTCGCTAAATATGAACTGGTGCTATGCTTAAAAATTGCTGCTGGTTTGATGATGGGGACACTTCCTATTGTG : GTATCTCTGACATGGCTAACCAACAAGCTTTCCTC</gDNA_template>
            <first_frame> Y  S  F  *  N  F  H  I  F  T  D  H  T  S  L  Q  S  N  D  P  N  P  N  P  N  P  N  P  R  I  S  P  E  L  K  T  V  *  V  V  T  E  K  K  Y  R  A  S  K  Q  *  S  S  L  I  N  N  G  G  C  R  F  S  R  S  A  L  V  R  L  P  Y  S  P  S  S  S  S  Y  L  L  L  F  F  *  N  T  N  L  N  S  S  L  :  Y  L  S  S  K  :  A  R  K  S  *  H  *  M  L  H  K  Y  R  R  L  N  *  H  C  N  *  S  R  G  S  G  *  C  C  N  *  *  L  W  L  Y  N  T  C  S  S  S  Q  I  *  Y  S  G  N  *  S  T  K  S  A  S  Q  G  N  I  C  G  H  S  L  D  N  I  A   : S  L  I  R  G  G  A  E  H  Y  C  C  D  S  C  S  S  S  R  V  I  R :   F  I  C  *  L  L  G  W  V  Y  G  G  T  T  L  E  F  R  L  T  C  C  H  C  V  D  S  S  *  S  S  S  C  G  T  H  G  F  P  R  *   : A  R  C  N  W  W  R  S  S  G  W  K  T  Y  G  S  L  S  S  G  S  C  I  *  L  S  I  Y  S  P   : V  G  A  V  E  R  L  S  G  L  A  L  G  V  A  V  E  R  D  W  V  V  L  :  L  A  G  T  N  R  P  V  A  L  A  Q  A  N  A  V  L  S  R  I  N  L  L  C  E  :  I  V  G  A  A  L  F  G  I  L  L  A  K  Y  E  L  V  L  C  L  K  I  A  A  G  L  M  M  G  T  L  P  I  V  :  V  S  L  T  W  L  T  N  K  L  S   </first_frame>
            <second_frame>  I  P  F  E  I  S  T  Y  S  L  T  T  H  L  S  N  R  M  T  Q  I  Q  T  Q  T  Q  T  L  G  S  R  R  S  *  R  L  Y  E  *  S  P  R  R  N  T  V  L  Q  S  S  E  A  V  *  *  T  M  V  V  V  V  S  H  A  Q  P  W  S  A  F  L  T  L  R  Q  V  P  L  T  S  S  S  S  F  R  I  R  T  L  T  P  R  F :   T  C  R  V  R :   L  G  S  L  N  T  R  C  S  I  N  T  D  V  L  T  D  I  A  T  D  Q  E  V  R  D  D  V  A  T  D  D  C  G  C  T  I  P  V  L  H  L  K  S  D  I  L  E  T  E  A  L  N  L  L  A  K  G  T  F  V  D  T  L  L  T  T  L  P  :  V  L  S  E  E  E  Q  N  I  I  A  A  T  P  A  H  P  A  G  L  Y   : A  L  Y  A  S  C  L  A  G  Y  M  V  E  Q  L  W  N  F  A  S  P  A  A  I  A  L  I  H  P  S  L  L  P  V  A  L  M  G  F  L  A  K  :  L  A  V  I  G  G  G  P  L  V  G  K  L  M  D  H  F  P  R  V  P  A  Y  N  C  L  Y  I  V  Q  :  W  E  L  L  R  G  Y  L  G  W  H  W  G  L  Q  W  S  V  I  G  L  F  C :   *  L  E  P  I  A  Q  L  L  L  L  K  Q  M  L  F  *  A  V  L  T  F  Y  A  R :   L  L  E  Q  H  Y  L  A  F  F  S  L  N  M  N  W  C  Y  A  *  K  L  L  L  V  *  *  W  G  H  F  L  L  W :   Y  L  *  H  G  *  P  T  S  F  P  </second_frame>
            <third_frame>   F  L  L  K  F  P  H  I  H  *  P  H  I  S  P  I  E  *  P  K  S  K  P  K  P  K  P  *  D  L  A  G  A  E  D  C  M  S  S  H  R  E  E  I  P  C  F  K  A  V  K  Q  F  N  K  Q  W  W  L  S  F  L  T  L  S  L  G  P  P  S  L  L  S  V  K  F  L  L  P  P  P  L  L  L  E  Y  E  P  *  L  L  A   : L  P  V  E  *   : G  S  E  V  L  T  L  D  A  P  *  I  P  T  S  *  L  T  L  Q  L  I  K  R  F  G  M  M  L  Q  L  M  I  V  A  V  Q  Y  L  F  F  I  S  N  L  I  F  W  K  L  K  H  *  I  C  *  P  R  E  H  L  W  T  L  S  *  Q  H  C  Q :   S  Y  Q  R  R  S  R  T  L  L  L  R  L  L  L  I  Q  Q  G  Y  T  :  L  Y  M  L  V  A  W  L  G  I  W  W  N  N  F  G  I  S  P  H  L  L  P  L  R  *  F  I  L  V  F  F  L  W  H  S  W  V  S  S  L  S :   S  L  *  L  V  E  V  L  W  L  E  N  L  W  I  T  F  L  G  F  L  H  I  I  V  Y  I  *  S  S :   G  S  C  *  E  A  I  W  V  G  I  G  G  C  S  G  A  *  L  G  C  F   : V  S  W  N  Q  S  P  S  C  S  C  S  S  K  C  C  S  K  P  Y  *  P  F  M  R   : D  C  W  S  S  I  I  W  H  S  S  R  *  I  *  T  G  A  M  L  K  N  C  C  W  F  D  D  G  D  T  S  Y  C   : G  I  S  D  M  A  N  Q  Q  A  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70932" stop="70820"/>
                    <exon start="70403" stop="70389"/>
                    <exon start="69515" stop="69308"/>
                    <exon start="69202" stop="69139"/>
                    <exon start="68217" stop="68093"/>
                    <exon start="67901" stop="67812"/>
                    <exon start="67619" stop="67552"/>
                    <exon start="67457" stop="67454"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMVVVVSHAQPWSAFLTLRQVPLTSSSSFRIRTLTPRFTCRVRLGSLNTRCSINTDVLTDIATDQEVRDDVATDDCGCTIPVLHLKSDILETEALNLLAKGTFVDTLLTTLPVLSEEEQNIIAATPAHPAGLYALYASCLAGYMVEQLWNFASPAAIALIHPSLLPVALMGFLAKLAVIGGGPLVGKLMDHFPRVPAYNCLYIVQWELLRGYLGWHWGLQWSVIGLFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="78241" PGL_stop="80793"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78241" e_stop="78525"/>
            <exon e_start="79514" e_stop="79615"/>
            <exon e_start="79719" e_stop="79785"/>
            <exon e_start="79875" e_stop="79972"/>
            <exon e_start="80508" e_stop="80600"/>
            <exon e_start="80705" e_stop="80793"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.934" e_score="0.891"/>
          <exon-intron don_prob="0.966" acc_prob="0.308" e_score="0.980"/>
          <exon-intron don_prob="1.000" acc_prob="0.969" e_score="0.955"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="0.918"/>
          <exon-intron don_prob="0.544" acc_prob="1.000" e_score="0.978"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.891">
            <gDNA_exon_boundary e_start="78241" e_stop="78525" e_length="285"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.934">
            <gDNA_intron_boundary i_start="78526" i_stop="79513" i_length="988"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="79514" e_stop="79615" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.308">
            <gDNA_intron_boundary i_start="79616" i_stop="79718" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.955">
            <gDNA_exon_boundary e_start="79719" e_stop="79785" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="79786" i_stop="79874" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.918">
            <gDNA_exon_boundary e_start="79875" e_stop="79972" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79973" i_stop="80507" i_length="535"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="80508" e_stop="80600" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.544" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80601" i_stop="80704" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="0.955">
            <gDNA_exon_boundary e_start="80705" e_stop="80793" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78241" stop="78525"/>
              <exon start="79514" stop="79615"/>
              <exon start="79719" stop="79785"/>
              <exon start="79875" stop="79972"/>
              <exon start="80508" stop="80600"/>
              <exon start="80705" stop="80793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545823" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTGGGAATTTCCCTTTTTTGAACTAGTTCTTGATTGAGCAGTAATTTGTTGATTTATATGTTTATGGTTCAATGCTATTGTCAGATGGCCCATTATATCTTTTAGGATTTCACCTCAGCCATTGGTCATTCGGTTTAAAGGCTGATGATTTGATGAAGCAATGATTAAGCTACATGTATGACGTAATGATTAAGCTACATGTAATATATGGAAAAGAAGTAAAACAAAAGAAAATAATTATCAAGAACCTCTGTCCATGGAAACTTTGTTATGCAAGAAACTA : GTGAAGCAAACTTCTTAGGTGGTGTTGCTTATGCTAAGCGTGGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTTCTAAAGATGTATCTTTTAAAG : TCATTCGTAGTATGCAAAACCAAATTCTGGCATAGTTTTCCCTGGTGCCTTAGAACTTGTCTCTCAG : TATAAAAAGACTGGTCATAAAGTTGCTGTTGCATTTAGTGCGTCAGGCCGGAATAAAGTTGATGCAAACTTCGCTGCAGCAGGTTTACCAATAACAAT : GGTTCATATCTTCACGGTATATATGCAAACAAACACTATTCTTTGGTTGATAATGTAGTTTGCAAGAACATAGAACTCGGATGAAAATCACAG : GCTTGATGCAATTGTATCGGCTGATGCTTTTAGAACTTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCATGGATTCTTGATGTTC</gDNA_template>
            <first_frame> Y  W  E  F  P  F  F  E  L  V  L  D  *  A  V  I  C  *  F  I  C  L  W  F  N  A  I  V  R  W  P  I  I  S  F  R  I  S  P  Q  P  L  V  I  R  F  K  G  *  *  F  D  E  A  M  I  K  L  H  V  *  R  N  D  *  A  T  C  N  I  W  K  R  S  K  T  K  E  N  N  Y  Q  E  P  L  S  M  E  T  L  L  C  K  K  L  :  V  K  Q  T  S  *  V  V  L  L  M  L  S  V  V  E  G  F  D  T  E  A  A  K  K  R  F  L  K  M  Y  L  L  K  :  S  F  V  V  C  K  T  K  F  W  H  S  F  P  W  C  L  R  T  C  L  S   : V  *  K  D  W  S  *  S  C  C  C  I  *  C  V  R  P  E  *  S  *  C  K  L  R  C  S  R  F  T  N  N  N  :  G  S  Y  L  H  G  I  Y  A  N  K  H  Y  S  L  V  D  N  V  V  C  K  N  I  E  L  G  *  K  S  Q  :  A  *  C  N  C  I  G  *  C  F  *  N  F  E  A  C  S  *  Y  F  L  G  C  I  M  D  S  *  C   </first_frame>
            <second_frame>  T  G  N  F  P  F  L  N  *  F  L  I  E  Q  *  F  V  D  L  Y  V  Y  G  S  M  L  L  S  D  G  P  L  Y  L  L  G  F  H  L  S  H  W  S  F  G  L  K  A  D  D  L  M  K  Q  *  L  S  Y  M  Y  D  V  M  I  K  L  H  V  I  Y  G  K  E  V  K  Q  K  K  I  I  I  K  N  L  C  P  W  K  L  C  Y  A  R  N  * :   *  S  K  L  L  R  W  C  C  L  C  *  A  W  L  K  D  L  I  P  R  L  Q  R  R  G  F  *  R  C  I  F  *  S :   H  S  *  Y  A  K  P  N  S  G  I  V  F  P  G  A  L  E  L  V  S  Q  :  Y  K  K  T  G  H  K  V  A  V  A  F  S  A  S  G  R  N  K  V  D  A  N  F  A  A  A  G  L  P  I  T  M :   V  H  I  F  T  V  Y  M  Q  T  N  T  I  L  W  L  I  M  *  F  A  R  T  *  N  S  D  E  N  H  R :   L  D  A  I  V  S  A  D  A  F  R  T  L  K  P  A  P  D  I  F  L  A  A  S  W  I  L  D  V  </second_frame>
            <third_frame>   L  G  I  S  L  F  *  T  S  S  *  L  S  S  N  L  L  I  Y  M  F  M  V  Q  C  Y  C  Q  M  A  H  Y  I  F  *  D  F  T  S  A  I  G  H  S  V  *  R  L  M  I  *  *  S  N  D  *  A  T  C  M  T  *  *  L  S  Y  M  *  Y  M  E  K  K  *  N  K  R  K  *  L  S  R  T  S  V  H  G  N  F  V  M  Q  E  T   : S  E  A  N  F  L  G  G  V  A  Y  A  K  R  G  *  R  I  *  Y  R  G  C  K  E  E  V  S  K  D  V  S  F  K   : V  I  R  S  M  Q  N  Q  I  L  A  *  F  S  L  V  P  *  N  L  S  L  S :   I  K  R  L  V  I  K  L  L  L  H  L  V  R  Q  A  G  I  K  L  M  Q  T  S  L  Q  Q  V  Y  Q  *  Q   : W  F  I  S  S  R  Y  I  C  K  Q  T  L  F  F  G  *  *  C  S  L  Q  E  H  R  T  R  M  K  I  T   : G  L  M  Q  L  Y  R  L  M  L  L  E  L  *  S  L  L  L  I  F  S  W  L  H  H  G  F  L  M  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79729" stop="79785"/>
                    <exon start="79875" stop="79972"/>
                    <exon start="80508" stop="80565"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YAKPNSGIVFPGALELVSQYKKTGHKVAVAFSASGRNKVDANFAAAGLPITMVHIFTVYMQTNTILWLIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="85725" PGL_stop="88005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85725" e_stop="86002"/>
            <exon e_start="86534" e_stop="87310"/>
            <exon e_start="87741" e_stop="87830"/>
            <exon e_start="87992" e_stop="88005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.786" e_score="0.924"/>
          <exon-intron don_prob="0.999" acc_prob="0.106" e_score="0.920"/>
          <exon-intron don_prob="0.973" acc_prob="0.949" e_score="0.922"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="85725" e_stop="86002" e_length="278"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.786">
            <gDNA_intron_boundary i_start="86003" i_stop="86533" i_length="531"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="86534" e_stop="87310" e_length="777"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.106">
            <gDNA_intron_boundary i_start="87311" i_stop="87740" i_length="430"/>
          </intron>
          <exon e_serial="3" e_score="0.922">
            <gDNA_exon_boundary e_start="87741" e_stop="87830" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.949">
            <gDNA_intron_boundary i_start="87831" i_stop="87991" i_length="161"/>
          </intron>
          <exon e_serial="4" e_score="0.929">
            <gDNA_exon_boundary e_start="87992" e_stop="88005" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85725" stop="86002"/>
              <exon start="86534" stop="87041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85725" stop="86002"/>
              <exon start="86534" stop="86808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85725" stop="86002"/>
              <exon start="86534" stop="86631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85759" stop="86002"/>
              <exon start="86534" stop="86796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85817" stop="86002"/>
              <exon start="86534" stop="87182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85826" stop="86002"/>
              <exon start="86534" stop="86811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85849" stop="86002"/>
              <exon start="86534" stop="87021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85857" stop="86002"/>
              <exon start="86534" stop="86572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85895" stop="86002"/>
              <exon start="86534" stop="87019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85914" stop="86002"/>
              <exon start="86534" stop="86917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85919" stop="86002"/>
              <exon start="86534" stop="87267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85921" stop="86002"/>
              <exon start="86534" stop="87024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85951" stop="86002"/>
              <exon start="86534" stop="87306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85982" stop="86002"/>
              <exon start="86534" stop="87240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86534" stop="87241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86541" stop="87192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86542" stop="87019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86553" stop="87310"/>
              <exon start="87741" stop="87830"/>
              <exon start="87992" stop="88005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86555" stop="87237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86585" stop="87310"/>
              <exon start="87741" stop="87811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86588" stop="87310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86667" stop="87105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86692" stop="87195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86696" stop="87310"/>
              <exon start="87741" stop="87830"/>
              <exon start="87992" stop="88005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86742" stop="87310"/>
              <exon start="87741" stop="87782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86780" stop="87278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86782" stop="87053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86791" stop="87310"/>
              <exon start="87741" stop="87804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86791" stop="87295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86799" stop="87295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86825" stop="87150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86888" stop="87310"/>
              <exon start="87741" stop="87783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87075" stop="87310"/>
              <exon start="87741" stop="87783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296991" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCCCGTGTTGCTTAAGGATTACCATTTGGTGGAGAAACTTGCCAACTTTGACCAGGAATGTATCATGGAATGTGTTGTTCATGCCCGAGGTGCTAGTGCCAAAGGGTTTTTTGAAGTTACTCATGACATTGCTCACCTTACCCGTGCTGATTTCCTTCGCGCTCCCGCCATCCAGACTCTATTCATTGTGAGATTCTTTACTGTTATTCAAGAGAAGGGGTAGTCCTGAAACTTTGAGGGACCCTCGTGTTTTGCTGTCAAGTTCTACACCAGAGAG : AGAAACTTTGATCTGGTAGGGAACAACTTCCCCTTCTTCTTCATCCGTGATGGAATGAAGTTCCCTGACATGGTCCATGCTCTGAATCCAAACTCTGGAGTCCCATATCCAGGAGAATTGGGGGTCCTGGAATTTCTCTCATCATCCTGAAAGCCGATACATGTTCATTTTCCCCTTTTGACGATATTGCTATTCCACAAGATTACAGGCATATGGACGGGTCTGGTGTCCACACATTTACATTGATCAACAGGGCTGGGAAATCAACTTATGTGAAGTTCCACCCGGGAAGCCCACATGTGGTGTCATGTCCTTGCTGGAAGAAGAGGCAGACCGAGTCGGAGGAGCAAATCACAGCCACGCTACTTAGGACCTCTATGACTCTACTGCAGCTGGAAATTATCCTGAATGGAAGATCTTCATTCAGACTATGGATCCGGATCATGAAGACAGATTTGACTTTGATCCACTTGATGTGACAAAAACTTGGCCAGATGATATCTTGCCTTTGCAGCCCGTGGGAAGACTAGTTCTGAATAAGAACACTGATAACTTCTTTAATGAGAATGAGCAGCTTGCTTTCTGCCCTTCTATTGTGGTTCCAGGGGTTTATTACTCAGATGAGAAGATGCTTCAAACTCGTATTTTCATCTATTCTGATACCCTAAGGTATCGACTTGGACTAAACTATTGCAACTTCCTGCTAATGCTCCAAAGTGTGCTCATCACAGCAATCACTATGATGGCTCTATCAATTTTATGCACAGGGATGAGGAG : ATCAGCTACTTCCGTTCAAGGTATGATCAAGTTTGCCATGCTGAGATGTATCCTATTCCTTCAACAGTCTGCTGTGGTAAACGAAAGAAG : TGTATCATTCAGAA</gDNA_template>
            <first_frame> V  P  C  C  L  R  I  T  I  W  W  R  N  L  P  T  L  T  R  N  V  S  W  N  V  L  F  M  P  E  V  L  V  P  K  G  F  L  K  L  L  M  T  L  L  T  L  P  V  L  I  S  F  A  L  P  P  S  R  L  Y  S  L  *  D  S  L  L  L  F  K  R  R  G  S  P  E  T  L  R  D  P  R  V  L  L  S  S  S  T  P  E  R :   E  T  L  I  W  *  G  T  T  S  P  S  S  S  S  V  M  E  *  S  S  L  T  W  S  M  L  *  I  Q  T  L  E  S  H  I  Q  E  N  W  G  S  W  N  F  S  H  H  P  E  S  R  Y  M  F  I  F  P  F  *  R  Y  C  Y  S  T  R  L  Q  A  Y  G  R  V  W  C  P  H  I  Y  I  D  Q  Q  G  W  E  I  N  L  C  E  V  P  P  G  K  P  T  C  G  V  M  S  L  L  E  E  E  A  D  R  V  G  G  A  N  H  S  H  A  T  *  D  L  Y  D  S  T  A  A  G  N  Y  P  E  W  K  I  F  I  Q  T  M  D  P  D  H  E  D  R  F  D  F  D  P  L  D  V  T  K  T  W  P  D  D  I  L  P  L  Q  P  V  G  R  L  V  L  N  K  N  T  D  N  F  F  N  E  N  E  Q  L  A  F  C  P  S  I  V  V  P  G  V  Y  Y  S  D  E  K  M  L  Q  T  R  I  F  I  Y  S  D  T  L  R  Y  R  L  G  L  N  Y  C  N  F  L  L  M  L  Q  S  V  L  I  T  A  I  T  M  M  A  L  S  I  L  C  T  G  M  R  R :   S  A  T  S  V  Q  G  M  I  K  F  A  M  L  R  C  I  L  F  L  Q  Q  S  A  V  V  N  E  R  S :   V  S  F  R  </first_frame>
            <second_frame>  S  R  V  A  *  G  L  P  F  G  G  E  T  C  Q  L  *  P  G  M  Y  H  G  M  C  C  S  C  P  R  C  *  C  Q  R  V  F  *  S  Y  S  *  H  C  S  P  Y  P  C  *  F  P  S  R  S  R  H  P  D  S  I  H  C  E  I  L  Y  C  Y  S  R  E  G  V  V  L  K  L  *  G  T  L  V  F  C  C  Q  V  L  H  Q  R   : E  K  L  *  S  G  R  E  Q  L  P  L  L  L  H  P  *  W  N  E  V  P  *  H  G  P  C  S  E  S  K  L  W  S  P  I  S  R  R  I  G  G  P  G  I  S  L  I  I  L  K  A  D  T  C  S  F  S  P  F  D  D  I  A  I  P  Q  D  Y  R  H  M  D  G  S  G  V  H  T  F  T  L  I  N  R  A  G  K  S  T  Y  V  K  F  H  P  G  S  P  H  V  V  S  C  P  C  W  K  K  R  Q  T  E  S  E  E  Q  I  T  A  T  L  L  R  T  S  M  T  L  L  Q  L  E  I  I  L  N  G  R  S  S  F  R  L  W  I  R  I  M  K  T  D  L  T  L  I  H  L  M  *  Q  K  L  G  Q  M  I  S  C  L  C  S  P  W  E  D  *  F  *  I  R  T  L  I  T  S  L  M  R  M  S  S  L  L  S  A  L  L  L  W  F  Q  G  F  I  T  Q  M  R  R  C  F  K  L  V  F  S  S  I  L  I  P  *  G  I  D  L  D  *  T  I  A  T  S  C  *  C  S  K  V  C  S  S  Q  Q  S  L  *  W  L  Y  Q  F  Y  A  Q  G  *  G   : D  Q  L  L  P  F  K  V  *  S  S  L  P  C  *  D  V  S  Y  S  F  N  S  L  L  W  *  T  K  E   : V  Y  H  S  E </second_frame>
            <third_frame>   P  V  L  L  K  D  Y  H  L  V  E  K  L  A  N  F  D  Q  E  C  I  M  E  C  V  V  H  A  R  G  A  S  A  K  G  F  F  E  V  T  H  D  I  A  H  L  T  R  A  D  F  L  R  A  P  A  I  Q  T  L  F  I  V  R  F  F  T  V  I  Q  E  K  G  *  S  *  N  F  E  G  P  S  C  F  A  V  K  F  Y  T  R  E  :  R  N  F  D  L  V  G  N  N  F  P  F  F  F  I  R  D  G  M  K  F  P  D  M  V  H  A  L  N  P  N  S  G  V  P  Y  P  G  E  L  G  V  L  E  F  L  S  S  S  *  K  P  I  H  V  H  F  P  L  L  T  I  L  L  F  H  K  I  T  G  I  W  T  G  L  V  S  T  H  L  H  *  S  T  G  L  G  N  Q  L  M  *  S  S  T  R  E  A  H  M  W  C  H  V  L  A  G  R  R  G  R  P  S  R  R  S  K  S  Q  P  R  Y  L  G  P  L  *  L  Y  C  S  W  K  L  S  *  M  E  D  L  H  S  D  Y  G  S  G  S  *  R  Q  I  *  L  *  S  T  *  C  D  K  N  L  A  R  *  Y  L  A  F  A  A  R  G  K  T  S  S  E  *  E  H  *  *  L  L  *  *  E  *  A  A  C  F  L  P  F  Y  C  G  S  R  G  L  L  L  R  *  E  D  A  S  N  S  Y  F  H  L  F  *  Y  P  K  V  S  T  W  T  K  L  L  Q  L  P  A  N  A  P  K  C  A  H  H  S  N  H  Y  D  G  S  I  N  F  M  H  R  D  E  E  :  I  S  Y  F  R  S  R  Y  D  Q  V  C  H  A  E  M  Y  P  I  P  S  T  V  C  C  G  K  R  K  K  :  C  I  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86904" stop="87310"/>
                    <exon start="87741" stop="87830"/>
                    <exon start="87992" stop="88004"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLYDSTAAGNYPEWKIFIQTMDPDHEDRFDFDPLDVTKTWPDDILPLQPVGRLVLNKNTDNFFNENEQLAFCPSIVVPGVYYSDEKMLQTRIFIYSDTLRYRLGLNYCNFLLMLQSVLITAITMMALSILCTGMRRSATSVQGMIKFAMLRCILFLQQSAVVNERSVSFR</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85727" stop="85948"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVLLKDYHLVEKLANFDQECIMECVVHARGASAKGFFEVTHDIAHLTRADFLRAPAIQTLFIVRFFTVIQEKG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85955" stop="86002"/>
                    <exon start="86534" stop="86683"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFEGPSCFAVKFYTRERNFDLVGNNFPFFFIRDGMKFPDMVHALNPNSGVPYPGELGVLEFLSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="88148" PGL_stop="91353"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88148" e_stop="88193"/>
            <exon e_start="88364" e_stop="88458"/>
            <exon e_start="89201" e_stop="89336"/>
            <exon e_start="89936" e_stop="90062"/>
            <exon e_start="90166" e_stop="90256"/>
            <exon e_start="90573" e_stop="91353"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.657" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.705" e_score="0.989"/>
          <exon-intron don_prob="0.789" acc_prob="0.715" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88148" e_stop="88193" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.657" acc_prob="0.996">
            <gDNA_intron_boundary i_start="88194" i_stop="88363" i_length="170"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="88364" e_stop="88458" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.705">
            <gDNA_intron_boundary i_start="88459" i_stop="89200" i_length="742"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89201" e_stop="89336" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.789" acc_prob="0.715">
            <gDNA_intron_boundary i_start="89337" i_stop="89935" i_length="599"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89936" e_stop="90062" e_length="127"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.975">
            <gDNA_intron_boundary i_start="90063" i_stop="90165" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90166" e_stop="90256" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90257" i_stop="90572" i_length="316"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90573" e_stop="91353" e_length="781"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88148" stop="88193"/>
              <exon start="88364" stop="88458"/>
              <exon start="89201" stop="89336"/>
              <exon start="89936" stop="90062"/>
              <exon start="90166" stop="90256"/>
              <exon start="90573" stop="90679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88173" stop="88193"/>
              <exon start="88364" stop="88458"/>
              <exon start="89201" stop="89336"/>
              <exon start="89936" stop="90062"/>
              <exon start="90166" stop="90256"/>
              <exon start="90573" stop="90747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89239" stop="89336"/>
              <exon start="89936" stop="90062"/>
              <exon start="90166" stop="90256"/>
              <exon start="90573" stop="90747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90612" stop="91353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCACTTTTGAAATACGCAACACTTGGATCTCATTCTGGTCTCAG : ATTTGATCACAGAACAGGCCTGGGTGGTTCTCACTGATGGATGTAATGCCCTAACACGATACTAGTTGAACAATTTTGTTGATAGTACTAAACAG : GGCGACCTTCACAGAAATTATATACAAGGATGTGGCTTTGGGAATTTCCAGATCAGTATGTTGTTGGGCCTACTTATGGATCCTGTGGTTTGTGCTTGGAGATCAGTTTGCTTGGATGTGTCTGTGAGACTAATAG : GTTCATATGTACTGGTCATAACGATCCGTGAATGTGTTGGATCTTACTTTGGCACCCTATCTTGAAAGTTTCATCGATGAAATTTTATCCTTGCTATCAGTCTCTCAAGAACTCTACTGCTGAAAAG : AAAACATGGAAGCTTAGTTTGCGGCACTGCTTAATGTCATAAAGAGAACTCCTGGTCTGTACTTCTCTTGTGATGTCAATATAAGATTGAG : GGACAGTCGAGTAGAAAAAAAGGAAGTGCAAGAATGATAGTCACCTAGTTTCAACAGGTTTGTTATTCTTGATTATCACAAAAACTTGCAGTTCTTTAAGCTTCGGAATTTCTCATTGGAATGTCAGTTTTCAATGAACCTTAAAAGACATGTATCTATCTTTGTTTGGATCTAAGTCTCTCTTGAATTGATGTTTTGGGGATGGACCTAAGTTGGTACAGTTGTAGAGACTAAACATGATGCAATTGCTATTTTTGTGGTCCAACTCCGTGAAAATGAATTGGTAGATTTCTTGATCGTCTCTTTGATTGGATATGATTTATCCTATTTTGGTGTATGAATTCCCTCGGATGAAGAAATGTTTAAGCCAAAAAGAAAACAGGATAGGAGATGAATGAGGGGAACAGATGAAAAGTGAGACACATGGCATCAAGATTAATCTTTGCAGCAAATTAGAAGTTCTTTTACCTGTTTCATTAAAAAAAATTACGGAGTAGAAGATGCTATTTAGAAGTCATCAATGAACCTTAAAAGACATGTATCTATCTTTGTTTGGATCTAAGTTTCTCTTGAATTGATGTTTTGGAGATGTATATAGTTTCTCTTTGTAGGTTAGTTGATTTGCTTTTTGAGGCATAGGCTTCTTGTTGTCCTTCTTCGTATATATCACCATCTGTTATTTATTGTGTTTTAATTATCATATTGTTTTGTTATTTTATTTTTATCTCGTAAAACATAAGATTGTCTGCTATAAAATGTCTTCCGACAAACAAAAAAAAAA</gDNA_template>
            <first_frame> Y  H  F  *  N  T  Q  H  L  D  L  I  L  V  S   : D  L  I  T  E  Q  A  W  V  V  L  T  D  G  C  N  A  L  T  R  Y  *  L  N  N  F  V  D  S  T  K  Q  :  G  D  L  H  R  N  Y  I  Q  G  C  G  F  G  N  F  Q  I  S  M  L  L  G  L  L  M  D  P  V  V  C  A  W  R  S  V  C  L  D  V  S  V  R  L  I   : G  S  Y  V  L  V  I  T  I  R  E  C  V  G  S  Y  F  G  T  L  S  *  K  F  H  R  *  N  F  I  L  A  I  S  L  S  R  T  L  L  L  K  R :   K  H  G  S  L  V  C  G  T  A  *  C  H  K  E  N  S  W  S  V  L  L  L  *  C  Q  Y  K  I  E  :  G  Q  S  S  R  K  K  G  S  A  R  M  I  V  T  *  F  Q  Q  V  C  Y  S  *  L  S  Q  K  L  A  V  L  *  A  S  E  F  L  I  G  M  S  V  F  N  E  P  *  K  T  C  I  Y  L  C  L  D  L  S  L  S  *  I  D  V  L  G  M  D  L  S  W  Y  S  C  R  D  *  T  *  C  N  C  Y  F  C  G  P  T  P  *  K  *  I  G  R  F  L  D  R  L  F  D  W  I  *  F  I  L  F  W  C  M  N  S  L  G  *  R  N  V  *  A  K  K  K  T  G  *  E  M  N  E  G  N  R  *  K  V  R  H  M  A  S  R  L  I  F  A  A  N  *  K  F  F  Y  L  F  H  *  K  K  L  R  S  R  R  C  Y  L  E  V  I  N  E  P  *  K  T  C  I  Y  L  C  L  D  L  S  F  S  *  I  D  V  L  E  M  Y  I  V  S  L  C  R  L  V  D  L  L  F  E  A  *  A  S  C  C  P  S  S  Y  I  S  P  S  V  I  Y  C  V  L  I  I  I  L  F  C  Y  F  I  F  I  S  *  N  I  R  L  S  A  I  K  C  L  P  T  N  K  K  K  </first_frame>
            <second_frame>  I  T  F  E  I  R  N  T  W  I  S  F  W  S  Q  :  I  *  S  Q  N  R  P  G  W  F  S  L  M  D  V  M  P  *  H  D  T  S  *  T  I  L  L  I  V  L  N  R :   A  T  F  T  E  I  I  Y  K  D  V  A  L  G  I  S  R  S  V  C  C  W  A  Y  L  W  I  L  W  F  V  L  G  D  Q  F  A  W  M  C  L  *  D  *  *  :  V  H  M  Y  W  S  *  R  S  V  N  V  L  D  L  T  L  A  P  Y  L  E  S  F  I  D  E  I  L  S  L  L  S  V  S  Q  E  L  Y  C  *  K   : E  N  M  E  A  *  F  A  A  L  L  N  V  I  K  R  T  P  G  L  Y  F  S  C  D  V  N  I  R  L  R :   D  S  R  V  E  K  K  E  V  Q  E  *  *  S  P  S  F  N  R  F  V  I  L  D  Y  H  K  N  L  Q  F  F  K  L  R  N  F  S  L  E  C  Q  F  S  M  N  L  K  R  H  V  S  I  F  V  W  I  *  V  S  L  E  L  M  F  W  G  W  T  *  V  G  T  V  V  E  T  K  H  D  A  I  A  I  F  V  V  Q  L  R  E  N  E  L  V  D  F  L  I  V  S  L  I  G  Y  D  L  S  Y  F  G  V  *  I  P  S  D  E  E  M  F  K  P  K  R  K  Q  D  R  R  *  M  R  G  T  D  E  K  *  D  T  W  H  Q  D  *  S  L  Q  Q  I  R  S  S  F  T  C  F  I  K  K  N  Y  G  V  E  D  A  I  *  K  S  S  M  N  L  K  R  H  V  S  I  F  V  W  I  *  V  S  L  E  L  M  F  W  R  C  I  *  F  L  F  V  G  *  L  I  C  F  L  R  H  R  L  L  V  V  L  L  R  I  Y  H  H  L  L  F  I  V  F  *  L  S  Y  C  F  V  I  L  F  L  S  R  K  T  *  D  C  L  L  *  N  V  F  R  Q  T  K  K  K </second_frame>
            <third_frame>   S  L  L  K  Y  A  T  L  G  S  H  S  G  L  R :   F  D  H  R  T  G  L  G  G  S  H  *  W  M  *  C  P  N  T  I  L  V  E  Q  F  C  *  *  Y  *  T   : G  R  P  S  Q  K  L  Y  T  R  M  W  L  W  E  F  P  D  Q  Y  V  V  G  P  T  Y  G  S  C  G  L  C  L  E  I  S  L  L  G  C  V  C  E  T  N  R :   F  I  C  T  G  H  N  D  P  *  M  C  W  I  L  L  W  H  P  I  L  K  V  S  S  M  K  F  Y  P  C  Y  Q  S  L  K  N  S  T  A  E  K  :  K  T  W  K  L  S  L  R  H  C  L  M  S  *  R  E  L  L  V  C  T  S  L  V  M  S  I  *  D  *   : G  T  V  E  *  K  K  R  K  C  K  N  D  S  H  L  V  S  T  G  L  L  F  L  I  I  T  K  T  C  S  S  L  S  F  G  I  S  H  W  N  V  S  F  Q  *  T  L  K  D  M  Y  L  S  L  F  G  S  K  S  L  L  N  *  C  F  G  D  G  P  K  L  V  Q  L  *  R  L  N  M  M  Q  L  L  F  L  W  S  N  S  V  K  M  N  W  *  I  S  *  S  S  L  *  L  D  M  I  Y  P  I  L  V  Y  E  F  P  R  M  K  K  C  L  S  Q  K  E  N  R  I  G  D  E  *  G  E  Q  M  K  S  E  T  H  G  I  K  I  N  L  C  S  K  L  E  V  L  L  P  V  S  L  K  K  I  T  E  *  K  M  L  F  R  S  H  Q  *  T  L  K  D  M  Y  L  S  L  F  G  S  K  F  L  L  N  *  C  F  G  D  V  Y  S  F  S  L  *  V  S  *  F  A  F  *  G  I  G  F  L  L  S  F  F  V  Y  I  T  I  C  Y  L  L  C  F  N  Y  H  I  V  L  L  F  Y  F  Y  L  V  K  H  K  I  V  C  Y  K  M  S  S  D  K  Q  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88429" stop="88458"/>
                    <exon start="89201" stop="89336"/>
                    <exon start="89936" stop="90000"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNNFVDSTKQGDLHRNYIQGCGFGNFQISMLLGLLMDPVVCAWRSVCLDVSVRLIGSYVLVITIRECVGSYFGTLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89568" e_stop="90300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="89568" e_stop="90300" e_length="733"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89568" stop="90300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89569" stop="90201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89569" stop="90132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246193" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTGACATACATCAATAAATCTTTACATTATCGAAAAAAATGTCTGTTATATATGTCAAGAATGTACCCTTTGTTGCTCATTTTCTTGAAGATTTTTTTTTCCGTAAAATTATCATACACATATACAAAGTATATACCAATGTCTTGGTCTTGCCCAATTATGCATTTGACAGGTATCTTGCATTTTAGGTGTTGAGCAAAACCAGGACTATGAAATTTAGAACAAATTTTATCATGACATTGGAAAACATATCCTTATCTCAAAAGAAGATTGAGAAGACATAGCATGGTAGAAAGAAGTTCGAAGAGAAATATGAATTATGCATTTTTTAGGTATCAATTAAGGTTGCTCTGATCTTGCATTCAGGTTCATATGTACTGGTCATAACGATCCGTGAATGTGTTGGATCTTACTTTGGCACCCTATCTTGAAAGTTTCATCGATGAAATTTTATCCTTGCTATCAGTCTCTCAAGAACTCTACTGCTGAAAAGGTCGGTTTTCGATTTCCTAGTTAATTTCCTACCCTATTTATTTTTAATCTCATGCTGGTGTCTTCTATTTCTGTTCCTATGATATTGCTTTGGCTTTTGGCAGAAAACATGGAAGCTTAGTTTGCGGCACTGCTTAATGTCATAAAGAGAACTCCTGGTCTGTACTTCTCTTGTGATGTCAATATAAGATTGAGGTGAATTGTTTTTTCAATCCTTTTTACTGCTTGTGTTGCCTTTT</gDNA_template>
            <first_frame> L  *  H  T  S  I  N  L  Y  I  I  E  K  N  V  C  Y  I  C  Q  E  C  T  L  C  C  S  F  S  *  R  F  F  F  P  *  N  Y  H  T  H  I  Q  S  I  Y  Q  C  L  G  L  A  Q  L  C  I  *  Q  V  S  C  I  L  G  V  E  Q  N  Q  D  Y  E  I  *  N  K  F  Y  H  D  I  G  K  H  I  L  I  S  K  E  D  *  E  D  I  A  W  *  K  E  V  R  R  E  I  *  I  M  H  F  L  G  I  N  *  G  C  S  D  L  A  F  R  F  I  C  T  G  H  N  D  P  *  M  C  W  I  L  L  W  H  P  I  L  K  V  S  S  M  K  F  Y  P  C  Y  Q  S  L  K  N  S  T  A  E  K  V  G  F  R  F  P  S  *  F  P  T  L  F  I  F  N  L  M  L  V  S  S  I  S  V  P  M  I  L  L  W  L  L  A  E  N  M  E  A  *  F  A  A  L  L  N  V  I  K  R  T  P  G  L  Y  F  S  C  D  V  N  I  R  L  R  *  I  V  F  S  I  L  F  T  A  C  V  A  F  </first_frame>
            <second_frame>  S  D  I  H  Q  *  I  F  T  L  S  K  K  M  S  V  I  Y  V  K  N  V  P  F  V  A  H  F  L  E  D  F  F  F  R  K  I  I  I  H  I  Y  K  V  Y  T  N  V  L  V  L  P  N  Y  A  F  D  R  Y  L  A  F  *  V  L  S  K  T  R  T  M  K  F  R  T  N  F  I  M  T  L  E  N  I  S  L  S  Q  K  K  I  E  K  T  *  H  G  R  K  K  F  E  E  K  Y  E  L  C  I  F  *  V  S  I  K  V  A  L  I  L  H  S  G  S  Y  V  L  V  I  T  I  R  E  C  V  G  S  Y  F  G  T  L  S  *  K  F  H  R  *  N  F  I  L  A  I  S  L  S  R  T  L  L  L  K  R  S  V  F  D  F  L  V  N  F  L  P  Y  L  F  L  I  S  C  W  C  L  L  F  L  F  L  *  Y  C  F  G  F  W  Q  K  T  W  K  L  S  L  R  H  C  L  M  S  *  R  E  L  L  V  C  T  S  L  V  M  S  I  *  D  *  G  E  L  F  F  Q  S  F  L  L  L  V  L  P  F </second_frame>
            <third_frame>   L  T  Y  I  N  K  S  L  H  Y  R  K  K  C  L  L  Y  M  S  R  M  Y  P  L  L  L  I  F  L  K  I  F  F  S  V  K  L  S  Y  T  Y  T  K  Y  I  P  M  S  W  S  C  P  I  M  H  L  T  G  I  L  H  F  R  C  *  A  K  P  G  L  *  N  L  E  Q  I  L  S  *  H  W  K  T  Y  P  Y  L  K  R  R  L  R  R  H  S  M  V  E  R  S  S  K  R  N  M  N  Y  A  F  F  R  Y  Q  L  R  L  L  *  S  C  I  Q  V  H  M  Y  W  S  *  R  S  V  N  V  L  D  L  T  L  A  P  Y  L  E  S  F  I  D  E  I  L  S  L  L  S  V  S  Q  E  L  Y  C  *  K  G  R  F  S  I  S  *  L  I  S  Y  P  I  Y  F  *  S  H  A  G  V  F  Y  F  C  S  Y  D  I  A  L  A  F  G  R  K  H  G  S  L  V  C  G  T  A  *  C  H  K  E  N  S  W  S  V  L  L  L  *  C  Q  Y  K  I  E  V  N  C  F  F  N  P  F  Y  C  L  C  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89570" stop="89764"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTYINKSLHYRKKCLLYMSRMYPLLLIFLKIFFSVKLSYTYTKYIPMSWSCPIMHLTGILHFRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="92039" PGL_stop="112481"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92039" e_stop="92393"/>
            <exon e_start="93782" e_stop="93882"/>
            <exon e_start="94030" e_stop="94086"/>
            <exon e_start="94174" e_stop="94268"/>
            <exon e_start="95014" e_stop="95113"/>
            <exon e_start="95592" e_stop="95650"/>
            <exon e_start="95876" e_stop="96000"/>
            <exon e_start="96303" e_stop="96429"/>
            <exon e_start="96886" e_stop="96973"/>
            <exon e_start="97059" e_stop="97137"/>
            <exon e_start="97386" e_stop="97446"/>
            <exon e_start="97643" e_stop="97718"/>
            <exon e_start="98396" e_stop="98506"/>
            <exon e_start="99439" e_stop="99534"/>
            <exon e_start="100132" e_stop="100254"/>
            <exon e_start="101564" e_stop="101761"/>
            <exon e_start="102855" e_stop="102959"/>
            <exon e_start="104890" e_stop="104983"/>
            <exon e_start="105156" e_stop="105452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.531" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.703" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92039" e_stop="92393" e_length="355"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="92394" i_stop="93781" i_length="1388"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93782" e_stop="93882" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.963">
            <gDNA_intron_boundary i_start="93883" i_stop="94029" i_length="147"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94030" e_stop="94086" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="94087" i_stop="94173" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94174" e_stop="94268" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94269" i_stop="95013" i_length="745"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95014" e_stop="95113" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.531" acc_prob="0.994">
            <gDNA_intron_boundary i_start="95114" i_stop="95591" i_length="478"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="95592" e_stop="95650" e_length="59"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95651" i_stop="95875" i_length="225"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="95876" e_stop="96000" e_length="125"/>
          </exon>
          <intron i_serial="7" don_prob="0.919" acc_prob="0.839">
            <gDNA_intron_boundary i_start="96001" i_stop="96302" i_length="302"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="96303" e_stop="96429" e_length="127"/>
          </exon>
          <intron i_serial="8" don_prob="0.890" acc_prob="0.789">
            <gDNA_intron_boundary i_start="96430" i_stop="96885" i_length="456"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="96886" e_stop="96973" e_length="88"/>
          </exon>
          <intron i_serial="9" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="96974" i_stop="97058" i_length="85"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="97059" e_stop="97137" e_length="79"/>
          </exon>
          <intron i_serial="10" don_prob="0.965" acc_prob="0.981">
            <gDNA_intron_boundary i_start="97138" i_stop="97385" i_length="248"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="97386" e_stop="97446" e_length="61"/>
          </exon>
          <intron i_serial="11" don_prob="0.978" acc_prob="0.924">
            <gDNA_intron_boundary i_start="97447" i_stop="97642" i_length="196"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="97643" e_stop="97718" e_length="76"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="97719" i_stop="98395" i_length="677"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="98396" e_stop="98506" e_length="111"/>
          </exon>
          <intron i_serial="13" don_prob="0.883" acc_prob="0.976">
            <gDNA_intron_boundary i_start="98507" i_stop="99438" i_length="932"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="99439" e_stop="99534" e_length="96"/>
          </exon>
          <intron i_serial="14" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="99535" i_stop="100131" i_length="597"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="100132" e_stop="100254" e_length="123"/>
          </exon>
          <intron i_serial="15" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="100255" i_stop="101563" i_length="1309"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="101564" e_stop="101761" e_length="198"/>
          </exon>
          <intron i_serial="16" don_prob="0.999" acc_prob="0.703">
            <gDNA_intron_boundary i_start="101762" i_stop="102854" i_length="1093"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="102855" e_stop="102959" e_length="105"/>
          </exon>
          <intron i_serial="17" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="102960" i_stop="104889" i_length="1930"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="104890" e_stop="104983" e_length="94"/>
          </exon>
          <intron i_serial="18" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="104984" i_stop="105155" i_length="172"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="105156" e_stop="105452" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92039" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92042" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94086"/>
              <exon start="94174" stop="94268"/>
              <exon start="95014" stop="95113"/>
              <exon start="95592" stop="95646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92046" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94086"/>
              <exon start="94174" stop="94268"/>
              <exon start="95014" stop="95113"/>
              <exon start="95592" stop="95650"/>
              <exon start="95876" stop="95961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92051" stop="92393"/>
              <exon start="93782" stop="93880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92052" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92058" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94086"/>
              <exon start="94174" stop="94268"/>
              <exon start="95014" stop="95113"/>
              <exon start="95592" stop="95648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92058" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92062" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94086"/>
              <exon start="94174" stop="94252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92065" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94086"/>
              <exon start="94174" stop="94268"/>
              <exon start="95014" stop="95056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92127" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94086"/>
              <exon start="94174" stop="94268"/>
              <exon start="95014" stop="95031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95022" stop="95113"/>
              <exon start="95592" stop="95650"/>
              <exon start="95876" stop="96000"/>
              <exon start="96303" stop="96429"/>
              <exon start="96886" stop="96973"/>
              <exon start="97059" stop="97137"/>
              <exon start="97386" stop="97446"/>
              <exon start="97643" stop="97718"/>
              <exon start="98396" stop="98427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95607" stop="95650"/>
              <exon start="95876" stop="96000"/>
              <exon start="96303" stop="96429"/>
              <exon start="96886" stop="96973"/>
              <exon start="97059" stop="97137"/>
              <exon start="97386" stop="97446"/>
              <exon start="97643" stop="97718"/>
              <exon start="98396" stop="98506"/>
              <exon start="99439" stop="99534"/>
              <exon start="100132" stop="100239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99439" stop="99534"/>
              <exon start="100132" stop="100254"/>
              <exon start="101564" stop="101761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101649" stop="101761"/>
              <exon start="102855" stop="102959"/>
              <exon start="104890" stop="104983"/>
              <exon start="105156" stop="105452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312189" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAATGGCGTTAAGGCTTACACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGG : GTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAG : TATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAG : TGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGAT : GTTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATGTTCCCACTAGTGAG : TGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAG : ATGTATAGCAGTGACGACAACACTATCAGAAGATACTCTAAATGCGGCGGAGCCATCACTCATCAGAAAGGAGATAAGTGATATTTCACTTGAAGATATCCTCAATGGTGGCTCTGGTAGCCATA : ATGTGATGGTGCAGGAATCTCAATCCATTAACGATCTAGCTCTCTCTTTTCCTGAGCCCAATATGACAGGGAGTATCACAGAGCTGGATAATTATGTAACAAGTGGTGCCATATCCTCGATGGGAGG : GGTGCAGGTTACCAGACGAAATGTTGTTAGATATGGAAGTTTAGGAATTGCTGCATCCTGTCTCCTCTTTACTATTACAAACTGGAAG : GCAATGCAGTATGCATCTCCAAAAGCTATCTGGAACTTGTTGTTCGGCACAGGCAATCCTCCTTTTGAACAGAAAGAAG : ATGCGTCCAGTTCACAGAGGATTCAACAATTTGTAAACTATATATCTGATGTGGATGCCAG : GAAATCTACGACTATCGTGCCCGAGTTCCCATCTAAACTTGATTGGCTGAATACAAGCCCCCTTCAGCTAGGCAGG : GATTTGAAAGGAAAAGTCGTTCTTTTGGACTTCTGGACTTATTGCTGCATTAACTGTATGCATGTACTGCCAGATCTGGAGTTTCTGGAGAATAAATATAAAGATAAGCCT : TTTGTGGTTGTGGGGGTGCATTCAGCTAAATTTGACAACGAGAAGGACCTTGAAGCCATCCGTAGTGCTGTATTACGCTATGGAATCACTCATCCA : GTTGTCAATGATGGAGAAATGAATTTATGGCGGGAATTAGGTGTCAATTCATGGCCAACATTTGTTCTTGTCGGGCCAAATGGCAAGCTCTTGGCACAAGTAGCTGGCGAAGGTCATAGAAAG : GATCTTGATAATTTAGTCGAGGCTGCTCTTCTGTTCTATGGTAAGAAGAAGCTCTTGGATAGCAAACCCATTCCCTTGCGCTTGGAGAAAGATAATGATCCCCGCTTGTTAACGTCTCCTTTAAAGTTCCCCGGTAAGCTGGCAGTTGATGTCCTCAACAACCGGCTATTTATATCAGACAGCAATCATAACCGAATA : GTAGTAACTGATCTAGAAGGGAACTTTTTAGTCCAAGTTGGAAGCACAGGAGCAGAGGGTCTTCATGACGGTAACTTTGATGATGCAACATTCAATCGTCCGCAG : GGTCATTGACTTTGTGAATGAGACAGTGCGGACGCTTGCGGGAAATGGAACAAAAGGTTCTGATTATGAAGGGGGAGGAACTGGAACTGCACAG : CTTCTCAACTCTCCATGGGATGTCTGCTTTGAACCTGAGAATGAAATTGTCTACATCGCAATGGCTGGTCAGCATCAGATCTGGGAACACAAAACATTGGATGGAGTTACAAGAGCTTTCAGTGGGAATGGTTATGAGAGAAATTTGAATGGCTCAAGGTAATGTGTGTGTGTTAGCTTAACTAGAGTTTCAGCAGAACACTGGTTAATTGTGCTAGTTTTTTATATGAGATTGAAGTGTAGTTTATTGATTAATTCTTAAATGCTATGATGCTCACTATCATCATCTGTTTGTCAC</gDNA_template>
            <first_frame> E  K  M  A  L  R  L  T  P  F  L  L  P  T  Y  G  K  P  K  L  A  A  L  F  N  S  R  S  E  L  S  I  Q  F  L  S  K  N  F  R  M  L  D  F  E  S  R  K  M  G  L  K  V  S  A  S  Q  K  L  E  E  K  N  V  P  E  S  G  S  Q  W  G  K  V  S  A  V  L  F  D  M  D  G  V  L  C  N  S  E  E  S  S  R  K  A  A  V  D  V  F  A  E  M  G  V  Q  V  T  V  E  D  F  V  P  F  M  G  M   : G  E  A  N  F  L  G  G  V  A  A  A  K  G  V  E  G  F  D  T  E  A  A  K  K  R  F  F  E  I  Y  L  S  K  :  Y  A  K  P  N  S  G  I  G  F  P  G  A  F  E  L  V  S  Q  :  C  K  S  S  G  L  K  V  A  V  A  S  S  A  D  R  I  K  V  D  A  N  L  A  A  A  G  L  P  I  T  M :   F  D  A  I  V  S  A  D  A  F  K  N  L  K  P  A  P  D  I  F  L  A  A  S  R  I  L  D  V  P  T  S  E  :  C  I  V  I  E  D  A  L  A  G  V  Q  A  A  K  A  A  K  M  R :   C  I  A  V  T  T  T  L  S  E  D  T  L  N  A  A  E  P  S  L  I  R  K  E  I  S  D  I  S  L  E  D  I  L  N  G  G  S  G  S  H   : N  V  M  V  Q  E  S  Q  S  I  N  D  L  A  L  S  F  P  E  P  N  M  T  G  S  I  T  E  L  D  N  Y  V  T  S  G  A  I  S  S  M  G  G :   V  Q  V  T  R  R  N  V  V  R  Y  G  S  L  G  I  A  A  S  C  L  L  F  T  I  T  N  W  K  :  A  M  Q  Y  A  S  P  K  A  I  W  N  L  L  F  G  T  G  N  P  P  F  E  Q  K  E   : D  A  S  S  S  Q  R  I  Q  Q  F  V  N  Y  I  S  D  V  D  A  R :   K  S  T  T  I  V  P  E  F  P  S  K  L  D  W  L  N  T  S  P  L  Q  L  G  R  :  D  L  K  G  K  V  V  L  L  D  F  W  T  Y  C  C  I  N  C  M  H  V  L  P  D  L  E  F  L  E  N  K  Y  K  D  K  P  :  F  V  V  V  G  V  H  S  A  K  F  D  N  E  K  D  L  E  A  I  R  S  A  V  L  R  Y  G  I  T  H  P  :  V  V  N  D  G  E  M  N  L  W  R  E  L  G  V  N  S  W  P  T  F  V  L  V  G  P  N  G  K  L  L  A  Q  V  A  G  E  G  H  R  K  :  D  L  D  N  L  V  E  A  A  L  L  F  Y  G  K  K  K  L  L  D  S  K  P  I  P  L  R  L  E  K  D  N  D  P  R  L  L  T  S  P  L  K  F  P  G  K  L  A  V  D  V  L  N  N  R  L  F  I  S  D  S  N  H  N  R  I  :  V  V  T  D  L  E  G  N  F  L  V  Q  V  G  S  T  G  A  E  G  L  H  D  G  N  F  D  D  A  T  F  N  R  P  Q  :  G  H  *  L  C  E  *  D  S  A  D  A  C  G  K  W  N  K  R  F  *  L  *  R  G  R  N  W  N  C  T   : A  S  Q  L  S  M  G  C  L  L  *  T  *  E  *  N  C  L  H  R  N  G  W  S  A  S  D  L  G  T  Q  N  I  G  W  S  Y  K  S  F  Q  W  E  W  L  *  E  K  F  E  W  L  K  V  M  C  V  C  *  L  N  *  S  F  S  R  T  L  V  N  C  A  S  F  L  Y  E  I  E  V  *  F  I  D  *  F  L  N  A  M  M  L  T  I  I  I  C  L  S  </first_frame>
            <second_frame>  K  K  W  R  *  G  L  H  L  F  Y  C  P  L  M  E  N  P  N  *  L  H  F  S  I  Q  D  P  N  Y  P  F  N  F  F  Q  K  T  S  E  C  W  I  L  N  Q  E  R  W  V  *  R  *  V  L  P  K  N  W  K  R  R  M  Y  R  S  R  V  A  N  G  G  K  C  R  Q  C  C  L  I  W  M  V  C  S  A  I  V  R  N  R  Q  E  K  R  L  L  M  F  L  L  R  W  V  F  K  *  P  L  K  T  L  C  L  S  W  A  W  :  V  K  Q  T  S  *  V  V  L  L  L  L  R  V  L  K  D  L  I  P  R  L  Q  R  R  G  S  L  R  Y  I  Y  Q  S :   M  Q  N  R  I  L  A  L  V  S  L  V  P  L  N  L  S  L  S :   V  K  A  V  V  S  K  L  L  L  H  L  V  L  T  G  L  K  L  M  Q  T  W  L  Q  P  V  Y  Q  *  R   : C  L  M  Q  L  Y  Q  L  M  L  L  K  I  *  S  L  L  L  I  F  S  W  L  H  H  G  F  L  M  F  P  L  V  S :   V  L  *  L  K  M  H  *  L  E  Y  K  L  P  K  L  Q  K  *   : D  V  *  Q  *  R  Q  H  Y  Q  K  I  L  *  M  R  R  S  H  H  S  S  E  R  R  *  V  I  F  H  L  K  I  S  S  M  V  A  L  V  A  I  :  M  *  W  C  R  N  L  N  P  L  T  I  *  L  S  L  F  L  S  P  I  *  Q  G  V  S  Q  S  W  I  I  M  *  Q  V  V  P  Y  P  R  W  E   : G  C  R  L  P  D  E  M  L  L  D  M  E  V  *  E  L  L  H  P  V  S  S  L  L  L  Q  T  G  R :   Q  C  S  M  H  L  Q  K  L  S  G  T  C  C  S  A  Q  A  I  L  L  L  N  R  K  K  :  M  R  P  V  H  R  G  F  N  N  L  *  T  I  Y  L  M  W  M  P   : G  N  L  R  L  S  C  P  S  S  H  L  N  L  I  G  *  I  Q  A  P  F  S  *  A  G :   I  *  K  E  K  S  F  F  W  T  S  G  L  I  A  A  L  T  V  C  M  Y  C  Q  I  W  S  F  W  R  I  N  I  K  I  S  L :   L  W  L  W  G  C  I  Q  L  N  L  T  T  R  R  T  L  K  P  S  V  V  L  Y  Y  A  M  E  S  L  I  Q :   L  S  M  M  E  K  *  I  Y  G  G  N  *  V  S  I  H  G  Q  H  L  F  L  S  G  Q  M  A  S  S  W  H  K  *  L  A  K  V  I  E  R :   I  L  I  I  *  S  R  L  L  F  C  S  M  V  R  R  S  S  W  I  A  N  P  F  P  C  A  W  R  K  I  M  I  P  A  C  *  R  L  L  *  S  S  P  V  S  W  Q  L  M  S  S  T  T  G  Y  L  Y  Q  T  A  I  I  T  E  * :   *  *  L  I  *  K  G  T  F  *  S  K  L  E  A  Q  E  Q  R  V  F  M  T  V  T  L  M  M  Q  H  S  I  V  R  R :   V  I  D  F  V  N  E  T  V  R  T  L  A  G  N  G  T  K  G  S  D  Y  E  G  G  G  T  G  T  A  Q  :  L  L  N  S  P  W  D  V  C  F  E  P  E  N  E  I  V  Y  I  A  M  A  G  Q  H  Q  I  W  E  H  K  T  L  D  G  V  T  R  A  F  S  G  N  G  Y  E  R  N  L  N  G  S  R  *  C  V  C  V  S  L  T  R  V  S  A  E  H  W  L  I  V  L  V  F  Y  M  R  L  K  C  S  L  L  I  N  S  *  M  L  *  C  S  L  S  S  S  V  C  H </second_frame>
            <third_frame>   K  N  G  V  K  A  Y  T  F  S  T  A  H  L  W  K  T  Q  T  S  C  T  F  Q  F  K  I  R  I  I  H  S  I  S  F  K  K  L  Q  N  V  G  F  *  I  K  K  D  G  F  K  G  E  C  F  P  K  I  G  R  E  E  C  T  G  V  G  *  P  M  G  E  S  V  G  S  V  V  *  Y  G  W  C  A  L  Q  *  *  G  I  V  K  K  S  G  C  *  C  F  C  *  D  G  C  S  S  N  R  *  R  L  C  A  F  H  G  H  G :   *  S  K  L  L  R  W  C  C  C  C  *  G  C  *  R  I  *  Y  R  G  C  K  E  E  V  L  *  D  I  F  I  K   : V  C  K  T  E  F  W  H  W  F  P  W  C  L  *  T  C  L  S   : V  *  K  Q  W  S  Q  S  C  C  C  I  *  C  *  P  D  *  S  *  C  K  L  G  C  S  R  F  T  N  N  D  :  V  *  C  N  C  I  S  *  C  F  *  K  F  E  A  C  S  *  Y  F  L  G  C  I  T  D  S  *  C  S  H  *  *   : V  Y  C  D  *  R  C  T  S  W  S  T  S  C  Q  S  C  K  N  E  :  M  Y  S  S  D  D  N  T  I  R  R  Y  S  K  C  G  G  A  I  T  H  Q  K  G  D  K  *  Y  F  T  *  R  Y  P  Q  W  W  L  W  *  P  * :   C  D  G  A  G  I  S  I  H  *  R  S  S  S  L  F  S  *  A  Q  Y  D  R  E  Y  H  R  A  G  *  L  C  N  K  W  C  H  I  L  D  G  R  :  G  A  G  Y  Q  T  K  C  C  *  I  W  K  F  R  N  C  C  I  L  S  P  L  Y  Y  Y  K  L  E   : G  N  A  V  C  I  S  K  S  Y  L  E  L  V  V  R  H  R  Q  S  S  F  *  T  E  R  R :   C  V  Q  F  T  E  D  S  T  I  C  K  L  Y  I  *  C  G  C  Q  :  E  I  Y  D  Y  R  A  R  V  P  I  *  T  *  L  A  E  Y  K  P  P  S  A  R  Q   : G  F  E  R  K  S  R  S  F  G  L  L  D  L  L  L  H  *  L  Y  A  C  T  A  R  S  G  V  S  G  E  *  I  *  R  *  A   : F  C  G  C  G  G  A  F  S  *  I  *  Q  R  E  G  P  *  S  H  P  *  C  C  I  T  L  W  N  H  S  S   : S  C  Q  *  W  R  N  E  F  M  A  G  I  R  C  Q  F  M  A  N  I  C  S  C  R  A  K  W  Q  A  L  G  T  S  S  W  R  R  S  *  K   : G  S  *  *  F  S  R  G  C  S  S  V  L  W  *  E  E  A  L  G  *  Q  T  H  S  L  A  L  G  E  R  *  *  S  P  L  V  N  V  S  F  K  V  P  R  *  A  G  S  *  C  P  Q  Q  P  A  I  Y  I  R  Q  Q  S  *  P  N   : S  S  N  *  S  R  R  E  L  F  S  P  S  W  K  H  R  S  R  G  S  S  *  R  *  L  *  *  C  N  I  Q  S  S  A   : G  S  L  T  L  *  M  R  Q  C  G  R  L  R  E  M  E  Q  K  V  L  I  M  K  G  E  E  L  E  L  H  S :   F  S  T  L  H  G  M  S  A  L  N  L  R  M  K  L  S  T  S  Q  W  L  V  S  I  R  S  G  N  T  K  H  W  M  E  L  Q  E  L  S  V  G  M  V  M  R  E  I  *  M  A  Q  G  N  V  C  V  L  A  *  L  E  F  Q  Q  N  T  G  *  L  C  *  F  F  I  *  D  *  S  V  V  Y  *  L  I  L  K  C  Y  D  A  H  Y  H  H  L  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92039" stop="92393"/>
                    <exon start="93782" stop="93882"/>
                    <exon start="94030" stop="94086"/>
                    <exon start="94174" stop="94268"/>
                    <exon start="95014" stop="95113"/>
                    <exon start="95592" stop="95650"/>
                    <exon start="95876" stop="96000"/>
                    <exon start="96303" stop="96429"/>
                    <exon start="96886" stop="96973"/>
                    <exon start="97059" stop="97137"/>
                    <exon start="97386" stop="97446"/>
                    <exon start="97643" stop="97718"/>
                    <exon start="98396" stop="98506"/>
                    <exon start="99439" stop="99534"/>
                    <exon start="100132" stop="100254"/>
                    <exon start="101564" stop="101761"/>
                    <exon start="102855" stop="102959"/>
                    <exon start="104890" stop="104898"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1962</number_coding_nucleotides>
                  <number_encoded_amino_acids>654</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMALRLTPFLLPTYGKPKLAALFNSRSELSIQFLSKNFRMLDFESRKMGLKVSASQKLEEKNVPESGSQWGKVSAVLFDMDGVLCNSEESSRKAAVDVFAEMGVQVTVEDFVPFMGMGEANFLGGVAAAKGVEGFDTEAAKKRFFEIYLSKYAKPNSGIGFPGAFELVSQCKSSGLKVAVASSADRIKVDANLAAAGLPITMFDAIVSADAFKNLKPAPDIFLAASRILDVPTSECIVIEDALAGVQAAKAAKMRCIAVTTTLSEDTLNAAEPSLIRKEISDISLEDILNGGSGSHNVMVQESQSINDLALSFPEPNMTGSITELDNYVTSGAISSMGGVQVTRRNVVRYGSLGIAASCLLFTITNWKAMQYASPKAIWNLLFGTGNPPFEQKEDASSSQRIQQFVNYISDVDARKSTTIVPEFPSKLDWLNTSPLQLGRDLKGKVVLLDFWTYCCINCMHVLPDLEFLENKYKDKPFVVVGVHSAKFDNEKDLEAIRSAVLRYGITHPVVNDGEMNLWRELGVNSWPTFVLVGPNGKLLAQVAGEGHRKDLDNLVEAALLFYGKKKLLDSKPIPLRLEKDNDPRLLTSPLKFPGKLAVDVLNNRLFISDSNHNRIVVTDLEGNFLVQVGSTGAEGLHDGNFDDATFNRPQGH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104907" stop="104983"/>
                    <exon start="105156" stop="105303"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRQCGRLREMEQKVLIMKGEELELHSFSTLHGMSALNLRMKLSTSQWLVSIRSGNTKHWMELQELSVGMVMREI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92039" e_stop="92393"/>
            <exon e_start="93782" e_stop="93882"/>
            <exon e_start="94030" e_stop="94086"/>
            <exon e_start="94174" e_stop="94268"/>
            <exon e_start="95014" e_stop="95113"/>
            <exon e_start="95592" e_stop="95650"/>
            <exon e_start="95876" e_stop="96214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.531" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92039" e_stop="92393" e_length="355"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="92394" i_stop="93781" i_length="1388"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93782" e_stop="93882" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.963">
            <gDNA_intron_boundary i_start="93883" i_stop="94029" i_length="147"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94030" e_stop="94086" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="94087" i_stop="94173" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94174" e_stop="94268" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94269" i_stop="95013" i_length="745"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95014" e_stop="95113" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.531" acc_prob="0.994">
            <gDNA_intron_boundary i_start="95114" i_stop="95591" i_length="478"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="95592" e_stop="95650" e_length="59"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95651" i_stop="95875" i_length="225"/>
          </intron>
          <exon e_serial="7" e_score="0.941">
            <gDNA_exon_boundary e_start="95876" e_stop="96214" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92039" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92042" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94086"/>
              <exon start="94174" stop="94268"/>
              <exon start="95014" stop="95113"/>
              <exon start="95592" stop="95646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92046" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94086"/>
              <exon start="94174" stop="94268"/>
              <exon start="95014" stop="95113"/>
              <exon start="95592" stop="95650"/>
              <exon start="95876" stop="95961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92051" stop="92393"/>
              <exon start="93782" stop="93880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92052" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92058" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94086"/>
              <exon start="94174" stop="94268"/>
              <exon start="95014" stop="95113"/>
              <exon start="95592" stop="95648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92058" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92062" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94086"/>
              <exon start="94174" stop="94252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92065" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94086"/>
              <exon start="94174" stop="94268"/>
              <exon start="95014" stop="95056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92127" stop="92393"/>
              <exon start="93782" stop="93882"/>
              <exon start="94030" stop="94086"/>
              <exon start="94174" stop="94268"/>
              <exon start="95014" stop="95031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93868" stop="93882"/>
              <exon start="94030" stop="94086"/>
              <exon start="94174" stop="94268"/>
              <exon start="95014" stop="95113"/>
              <exon start="95592" stop="95650"/>
              <exon start="95876" stop="96137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285068" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93880" stop="93882"/>
              <exon start="94030" stop="94086"/>
              <exon start="94174" stop="94268"/>
              <exon start="95014" stop="95113"/>
              <exon start="95592" stop="95650"/>
              <exon start="95876" stop="96214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95592" stop="95650"/>
              <exon start="95876" stop="96168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAATGGCGTTAAGGCTTACACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGTGTGCTCTGCAATAGTGAGGAATCGTCAAGAAAAGCGGCTGTTGATGTTTTTGCTGAGATGGGTGTTCAAGTAACCGTTGAAGACTTTGTGCCTTTCATGGGCATGG : GTGAAGCAAACTTCTTAGGTGGTGTTGCTGCTGCTAAGGGTGTTGAAGGATTTGATACCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATCAAAG : TATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAG : TGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGAT : GTTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATGTTCCCACTAGTGAG : TGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAG : ATGTATAGCAGTGACGACAACACTATCAGAAGATACTCTAAATGCGGCGGAGCCATCACTCATCAGAAAGGAGATAAGTGATATTTCACTTGAAGATATCCTCAATGGTGGCTCTGGTAGCCATAGTATGTAGTTCACCGACATGTTAAGAACTTCCCTTTCATGTACCATTTACAAATGTAGAATACTGAAGCTCTTTTTTTTTTTTTTTTATGGAAAAACTTGCGAGTAAGCTCTTTTTTGTAATGACTGTAATTTGTTGAAGGATGTCCTGTTCTCTGTTCCCTTAAGCTGTATGCTTTAGCTGCTAACTCAGTTAATGGAAATTTTCTAGTTCTA</gDNA_template>
            <first_frame> E  K  M  A  L  R  L  T  P  F  L  L  P  T  Y  G  K  P  K  L  A  A  L  F  N  S  R  S  E  L  S  I  Q  F  L  S  K  N  F  R  M  L  D  F  E  S  R  K  M  G  L  K  V  S  A  S  Q  K  L  E  E  K  N  V  P  E  S  G  S  Q  W  G  K  V  S  A  V  L  F  D  M  D  G  V  L  C  N  S  E  E  S  S  R  K  A  A  V  D  V  F  A  E  M  G  V  Q  V  T  V  E  D  F  V  P  F  M  G  M   : G  E  A  N  F  L  G  G  V  A  A  A  K  G  V  E  G  F  D  T  E  A  A  K  K  R  F  F  E  I  Y  L  S  K  :  Y  A  K  P  N  S  G  I  G  F  P  G  A  F  E  L  V  S  Q  :  C  K  S  S  G  L  K  V  A  V  A  S  S  A  D  R  I  K  V  D  A  N  L  A  A  A  G  L  P  I  T  M :   F  D  A  I  V  S  A  D  A  F  K  N  L  K  P  A  P  D  I  F  L  A  A  S  R  I  L  D  V  P  T  S  E  :  C  I  V  I  E  D  A  L  A  G  V  Q  A  A  K  A  A  K  M  R :   C  I  A  V  T  T  T  L  S  E  D  T  L  N  A  A  E  P  S  L  I  R  K  E  I  S  D  I  S  L  E  D  I  L  N  G  G  S  G  S  H  S  M  *  F  T  D  M  L  R  T  S  L  S  C  T  I  Y  K  C  R  I  L  K  L  F  F  F  F  F  Y  G  K  T  C  E  *  A  L  F  C  N  D  C  N  L  L  K  D  V  L  F  S  V  P  L  S  C  M  L  *  L  L  T  Q  L  M  E  I  F  *  F   </first_frame>
            <second_frame>  K  K  W  R  *  G  L  H  L  F  Y  C  P  L  M  E  N  P  N  *  L  H  F  S  I  Q  D  P  N  Y  P  F  N  F  F  Q  K  T  S  E  C  W  I  L  N  Q  E  R  W  V  *  R  *  V  L  P  K  N  W  K  R  R  M  Y  R  S  R  V  A  N  G  G  K  C  R  Q  C  C  L  I  W  M  V  C  S  A  I  V  R  N  R  Q  E  K  R  L  L  M  F  L  L  R  W  V  F  K  *  P  L  K  T  L  C  L  S  W  A  W  :  V  K  Q  T  S  *  V  V  L  L  L  L  R  V  L  K  D  L  I  P  R  L  Q  R  R  G  S  L  R  Y  I  Y  Q  S :   M  Q  N  R  I  L  A  L  V  S  L  V  P  L  N  L  S  L  S :   V  K  A  V  V  S  K  L  L  L  H  L  V  L  T  G  L  K  L  M  Q  T  W  L  Q  P  V  Y  Q  *  R   : C  L  M  Q  L  Y  Q  L  M  L  L  K  I  *  S  L  L  L  I  F  S  W  L  H  H  G  F  L  M  F  P  L  V  S :   V  L  *  L  K  M  H  *  L  E  Y  K  L  P  K  L  Q  K  *   : D  V  *  Q  *  R  Q  H  Y  Q  K  I  L  *  M  R  R  S  H  H  S  S  E  R  R  *  V  I  F  H  L  K  I  S  S  M  V  A  L  V  A  I  V  C  S  S  P  T  C  *  E  L  P  F  H  V  P  F  T  N  V  E  Y  *  S  S  F  F  F  F  F  M  E  K  L  A  S  K  L  F  F  V  M  T  V  I  C  *  R  M  S  C  S  L  F  P  *  A  V  C  F  S  C  *  L  S  *  W  K  F  S  S  S  </second_frame>
            <third_frame>   K  N  G  V  K  A  Y  T  F  S  T  A  H  L  W  K  T  Q  T  S  C  T  F  Q  F  K  I  R  I  I  H  S  I  S  F  K  K  L  Q  N  V  G  F  *  I  K  K  D  G  F  K  G  E  C  F  P  K  I  G  R  E  E  C  T  G  V  G  *  P  M  G  E  S  V  G  S  V  V  *  Y  G  W  C  A  L  Q  *  *  G  I  V  K  K  S  G  C  *  C  F  C  *  D  G  C  S  S  N  R  *  R  L  C  A  F  H  G  H  G :   *  S  K  L  L  R  W  C  C  C  C  *  G  C  *  R  I  *  Y  R  G  C  K  E  E  V  L  *  D  I  F  I  K   : V  C  K  T  E  F  W  H  W  F  P  W  C  L  *  T  C  L  S   : V  *  K  Q  W  S  Q  S  C  C  C  I  *  C  *  P  D  *  S  *  C  K  L  G  C  S  R  F  T  N  N  D  :  V  *  C  N  C  I  S  *  C  F  *  K  F  E  A  C  S  *  Y  F  L  G  C  I  T  D  S  *  C  S  H  *  *   : V  Y  C  D  *  R  C  T  S  W  S  T  S  C  Q  S  C  K  N  E  :  M  Y  S  S  D  D  N  T  I  R  R  Y  S  K  C  G  G  A  I  T  H  Q  K  G  D  K  *  Y  F  T  *  R  Y  P  Q  W  W  L  W  *  P  *  Y  V  V  H  R  H  V  K  N  F  P  F  M  Y  H  L  Q  M  *  N  T  E  A  L  F  F  F  F  L  W  K  N  L  R  V  S  S  F  L  *  *  L  *  F  V  E  G  C  P  V  L  C  S  L  K  L  Y  A  L  A  A  N  S  V  N  G  N  F  L  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92039" stop="92393"/>
                    <exon start="93782" stop="93882"/>
                    <exon start="94030" stop="94086"/>
                    <exon start="94174" stop="94268"/>
                    <exon start="95014" stop="95113"/>
                    <exon start="95592" stop="95650"/>
                    <exon start="95876" stop="96008"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMALRLTPFLLPTYGKPKLAALFNSRSELSIQFLSKNFRMLDFESRKMGLKVSASQKLEEKNVPESGSQWGKVSAVLFDMDGVLCNSEESSRKAAVDVFAEMGVQVTVEDFVPFMGMGEANFLGGVAAAKGVEGFDTEAAKKRFFEIYLSKYAKPNSGIGFPGAFELVSQCKSSGLKVAVASSADRIKVDANLAAAGLPITMFDAIVSADAFKNLKPAPDIFLAASRILDVPTSECIVIEDALAGVQAAKAAKMRCIAVTTTLSEDTLNAAEPSLIRKEISDISLEDILNGGSGSHSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="110547" e_stop="111113"/>
            <exon e_start="111245" e_stop="111394"/>
            <exon e_start="112130" e_stop="112439"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.871" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110547" e_stop="111113" e_length="567"/>
          </exon>
          <intron i_serial="1" don_prob="0.871" acc_prob="0.997">
            <gDNA_intron_boundary i_start="111114" i_stop="111244" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111245" e_stop="111394" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="111395" i_stop="112129" i_length="735"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="112130" e_stop="112439" e_length="310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110547" stop="111113"/>
              <exon start="111245" stop="111394"/>
              <exon start="112130" stop="112193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110548" stop="111113"/>
              <exon start="111245" stop="111277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110548" stop="110955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110822" stop="111113"/>
              <exon start="111245" stop="111394"/>
              <exon start="112130" stop="112439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATATACACCAGAGATTCATTAATACTTTTTGCAATGTCTCATTGACAAGTTAAACCAGGAAACTGGAGATTTTTTTTGTAAGCTCAAACGTCATATCTTGTAAATCTTGCATCTTCTGGATGCTGTAATTAATACCACTTATCTTATCAAAAAAAAAAAACCAAGAAGATGTTCCCTGCAATGGCAATGTTATTCCAGAATTTGAGATCCAAGTCTTAAGTGTTGAGTTAGATCGTACCTTTGTTTGTATCTCTGTGTTCATGTTAAAAAATGTAACAGCTGATACTTGTATTTGATGCTATTTTATACAACCTTTTTAGGAAGATTGTACATAGCAGATACAAATAACAGTGTGATAAGATACTTAGATCTGAACAAGTCAGAAGCTGAAGTTCTTACTTTGGAGTTGAAAGGAGTGCAGCCTCCACTTAAATCCAGATCTTTGAAGCGCCTTAGACGTCGATCTGGAGCTGACACACAGACTATTGTAGTTAATGGTGGTTCATCCAGTGAGGGTACATTGAACTTAAGAATCTCGGTACCTGAAGGATACCATTTCTCCAAG : GAAGCGAAGAGTAAATTTAGCATAGATTTTGAGCCAGATAATGCTGCTGAGGTTGATTCCTTGGAGGGAAATCTCAGCCCAGAAGGTTCAGCAGTTGTGCACTTCAGAAGATCTTCTGCTTCACCAACCACCGGCAGAGTTTATTGCAAG : GTATACTATTGCAAAGAAGATGAGGTTTGCTTGTACCAGCCATTGACCTTTGAAGTACCATTTCAAGAGGTAAATCCAGATTTTGCCCCTGCCATGATCACACTTGCTTTTGATGTGAAGCCAAAAACATCCCCAACTAGCTTACAGATTCCGGCTAGGTAATGGATTCATCGTGAGAATACGTATTACTTAATCATGATTACTTGATAATAAATGAATGTATATAGAATGACACATCACGTTTGTGCTTCACATTCAATTCAAGATATTAAAAAGAAATTGATACACTGTTTAGTACTTTAATAGATGT</gDNA_template>
            <first_frame> *  Y  T  P  E  I  H  *  Y  F  L  Q  C  L  I  D  K  L  N  Q  E  T  G  D  F  F  C  K  L  K  R  H  I  L  *  I  L  H  L  L  D  A  V  I  N  T  T  Y  L  I  K  K  K  K  P  R  R  C  S  L  Q  W  Q  C  Y  S  R  I  *  D  P  S  L  K  C  *  V  R  S  Y  L  C  L  Y  L  C  V  H  V  K  K  C  N  S  *  Y  L  Y  L  M  L  F  Y  T  T  F  L  G  R  L  Y  I  A  D  T  N  N  S  V  I  R  Y  L  D  L  N  K  S  E  A  E  V  L  T  L  E  L  K  G  V  Q  P  P  L  K  S  R  S  L  K  R  L  R  R  R  S  G  A  D  T  Q  T  I  V  V  N  G  G  S  S  S  E  G  T  L  N  L  R  I  S  V  P  E  G  Y  H  F  S  K  :  E  A  K  S  K  F  S  I  D  F  E  P  D  N  A  A  E  V  D  S  L  E  G  N  L  S  P  E  G  S  A  V  V  H  F  R  R  S  S  A  S  P  T  T  G  R  V  Y  C  K  :  V  Y  Y  C  K  E  D  E  V  C  L  Y  Q  P  L  T  F  E  V  P  F  Q  E  V  N  P  D  F  A  P  A  M  I  T  L  A  F  D  V  K  P  K  T  S  P  T  S  L  Q  I  P  A  R  *  W  I  H  R  E  N  T  Y  Y  L  I  M  I  T  *  *  *  M  N  V  Y  R  M  T  H  H  V  C  A  S  H  S  I  Q  D  I  K  K  K  L  I  H  C  L  V  L  *  *  M  </first_frame>
            <second_frame>  D  I  H  Q  R  F  I  N  T  F  C  N  V  S  L  T  S  *  T  R  K  L  E  I  F  F  V  S  S  N  V  I  S  C  K  S  C  I  F  W  M  L  *  L  I  P  L  I  L  S  K  K  K  N  Q  E  D  V  P  C  N  G  N  V  I  P  E  F  E  I  Q  V  L  S  V  E  L  D  R  T  F  V  C  I  S  V  F  M  L  K  N  V  T  A  D  T  C  I  *  C  Y  F  I  Q  P  F  *  E  D  C  T  *  Q  I  Q  I  T  V  *  *  D  T  *  I  *  T  S  Q  K  L  K  F  L  L  W  S  *  K  E  C  S  L  H  L  N  P  D  L  *  S  A  L  D  V  D  L  E  L  T  H  R  L  L  *  L  M  V  V  H  P  V  R  V  H  *  T  *  E  S  R  Y  L  K  D  T  I  S  P  R :   K  R  R  V  N  L  A  *  I  L  S  Q  I  M  L  L  R  L  I  P  W  R  E  I  S  A  Q  K  V  Q  Q  L  C  T  S  E  D  L  L  L  H  Q  P  P  A  E  F  I  A  R :   Y  T  I  A  K  K  M  R  F  A  C  T  S  H  *  P  L  K  Y  H  F  K  R  *  I  Q  I  L  P  L  P  *  S  H  L  L  L  M  *  S  Q  K  H  P  Q  L  A  Y  R  F  R  L  G  N  G  F  I  V  R  I  R  I  T  *  S  *  L  L  D  N  K  *  M  Y  I  E  *  H  I  T  F  V  L  H  I  Q  F  K  I  L  K  R  N  *  Y  T  V  *  Y  F  N  R  C </second_frame>
            <third_frame>   I  Y  T  R  D  S  L  I  L  F  A  M  S  H  *  Q  V  K  P  G  N  W  R  F  F  L  *  A  Q  T  S  Y  L  V  N  L  A  S  S  G  C  C  N  *  Y  H  L  S  Y  Q  K  K  K  T  K  K  M  F  P  A  M  A  M  L  F  Q  N  L  R  S  K  S  *  V  L  S  *  I  V  P  L  F  V  S  L  C  S  C  *  K  M  *  Q  L  I  L  V  F  D  A  I  L  Y  N  L  F  R  K  I  V  H  S  R  Y  K  *  Q  C  D  K  I  L  R  S  E  Q  V  R  S  *  S  S  Y  F  G  V  E  R  S  A  A  S  T  *  I  Q  I  F  E  A  P  *  T  S  I  W  S  *  H  T  D  Y  C  S  *  W  W  F  I  Q  *  G  Y  I  E  L  K  N  L  G  T  *  R  I  P  F  L  Q   : G  S  E  E  *  I  *  H  R  F  *  A  R  *  C  C  *  G  *  F  L  G  G  K  S  Q  P  R  R  F  S  S  C  A  L  Q  K  I  F  C  F  T  N  H  R  Q  S  L  L  Q   : G  I  L  L  Q  R  R  *  G  L  L  V  P  A  I  D  L  *  S  T  I  S  R  G  K  S  R  F  C  P  C  H  D  H  T  C  F  *  C  E  A  K  N  I  P  N  *  L  T  D  S  G  *  V  M  D  S  S  *  E  Y  V  L  L  N  H  D  Y  L  I  I  N  E  C  I  *  N  D  T  S  R  L  C  F  T  F  N  S  R  Y  *  K  E  I  D  T  L  F  S  T  L  I  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110832" stop="111113"/>
                    <exon start="111245" stop="111394"/>
                    <exon start="112130" stop="112291"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLYLMLFYTTFLGRLYIADTNNSVIRYLDLNKSEAEVLTLELKGVQPPLKSRSLKRLRRRSGADTQTIVVNGGSSSEGTLNLRISVPEGYHFSKEAKSKFSIDFEPDNAAEVDSLEGNLSPEGSAVVHFRRSSASPTTGRVYCKVYYCKEDEVCLYQPLTFEVPFQEVNPDFAPAMITLAFDVKPKTSPTSLQIPAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="92049" e_stop="92287"/>
            <exon e_start="111341" e_stop="111394"/>
            <exon e_start="112130" e_stop="112416"/>
            <exon e_start="112471" e_stop="112481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.695" e_score="1.000"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92049" e_stop="92287" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92288" i_stop="111340" i_length="19053"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111341" e_stop="111394" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="111395" i_stop="112129" i_length="735"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112130" e_stop="112416" e_length="287"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.695">
            <gDNA_intron_boundary i_start="112417" i_stop="112470" i_length="54"/>
          </intron>
          <exon e_serial="4" e_score="0.636">
            <gDNA_exon_boundary e_start="112471" e_stop="112481" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92049" stop="92287"/>
              <exon start="111341" stop="111394"/>
              <exon start="112130" stop="112416"/>
              <exon start="112471" stop="112481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92062" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92064" stop="92275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740925" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTTAAGGCTTACACCTTTTCTACTGCCCACTTATGGAAAACCCAAACTAGCTGCACTTTTCAATTCAAGATCCGAATTATCCATTCAATTTCTTTCAAAAAACTTCAGAATGTTGGATTTTGAATCAAGAAAGATGGGTTTAAAGGTGAGTGCTTCCCAAAAATTGGAAGAGAAGAATGTACCGGAGTCGGGTAGCCAATGGGGGAAAGTGTCGGCAGTGTTGTTTGATATGGATGGT : GTGCACTTCAGAAGATCTTCTGCTTCACCAACCACCGGCAGAGTTTATTGCAAG : GTATACTATTGCAAAGAAGATGAGGTTTGCTTGTACCAGCCATTGACCTTTGAAGTACCATTTCAAGAGGTAAATCCAGATTTTGCCCCTGCCATGATCACACTTGCTTTTGATGTGAAGCCAAAAACATCCCCAACTAGCTTACAGATTCCGGCTAGGTAATGGATTCATCGTGAGAATACGTATTACTTAATCATGATTACTTGATAATAAATGAATGTATATAGAATGACACATCACGTTTGTGCTTCACATTCAATTCAAGATATTAAAAAGAAATTGATACA : CAAAGGATAAA</gDNA_template>
            <first_frame> R  *  G  L  H  L  F  Y  C  P  L  M  E  N  P  N  *  L  H  F  S  I  Q  D  P  N  Y  P  F  N  F  F  Q  K  T  S  E  C  W  I  L  N  Q  E  R  W  V  *  R  *  V  L  P  K  N  W  K  R  R  M  Y  R  S  R  V  A  N  G  G  K  C  R  Q  C  C  L  I  W  M  V :   C  T  S  E  D  L  L  L  H  Q  P  P  A  E  F  I  A  R :   Y  T  I  A  K  K  M  R  F  A  C  T  S  H  *  P  L  K  Y  H  F  K  R  *  I  Q  I  L  P  L  P  *  S  H  L  L  L  M  *  S  Q  K  H  P  Q  L  A  Y  R  F  R  L  G  N  G  F  I  V  R  I  R  I  T  *  S  *  L  L  D  N  K  *  M  Y  I  E  *  H  I  T  F  V  L  H  I  Q  F  K  I  L  K  R  N  *  Y   : T  K  D  K </first_frame>
            <second_frame>  V  K  A  Y  T  F  S  T  A  H  L  W  K  T  Q  T  S  C  T  F  Q  F  K  I  R  I  I  H  S  I  S  F  K  K  L  Q  N  V  G  F  *  I  K  K  D  G  F  K  G  E  C  F  P  K  I  G  R  E  E  C  T  G  V  G  *  P  M  G  E  S  V  G  S  V  V  *  Y  G  W   : C  A  L  Q  K  I  F  C  F  T  N  H  R  Q  S  L  L  Q   : G  I  L  L  Q  R  R  *  G  L  L  V  P  A  I  D  L  *  S  T  I  S  R  G  K  S  R  F  C  P  C  H  D  H  T  C  F  *  C  E  A  K  N  I  P  N  *  L  T  D  S  G  *  V  M  D  S  S  *  E  Y  V  L  L  N  H  D  Y  L  I  I  N  E  C  I  *  N  D  T  S  R  L  C  F  T  F  N  S  R  Y  *  K  E  I  D  T  :  Q  R  I   </second_frame>
            <third_frame>   L  R  L  T  P  F  L  L  P  T  Y  G  K  P  K  L  A  A  L  F  N  S  R  S  E  L  S  I  Q  F  L  S  K  N  F  R  M  L  D  F  E  S  R  K  M  G  L  K  V  S  A  S  Q  K  L  E  E  K  N  V  P  E  S  G  S  Q  W  G  K  V  S  A  V  L  F  D  M  D  G  :  V  H  F  R  R  S  S  A  S  P  T  T  G  R  V  Y  C  K  :  V  Y  Y  C  K  E  D  E  V  C  L  Y  Q  P  L  T  F  E  V  P  F  Q  E  V  N  P  D  F  A  P  A  M  I  T  L  A  F  D  V  K  P  K  T  S  P  T  S  L  Q  I  P  A  R  *  W  I  H  R  E  N  T  Y  Y  L  I  M  I  T  *  *  *  M  N  V  Y  R  M  T  H  H  V  C  A  S  H  S  I  Q  D  I  K  K  K  L  I  H :   K  G  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92051" stop="92287"/>
                    <exon start="111341" stop="111394"/>
                    <exon start="112130" stop="112291"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRLTPFLLPTYGKPKLAALFNSRSELSIQFLSKNFRMLDFESRKMGLKVSASQKLEEKNVPESGSQWGKVSAVLFDMDGVHFRRSSASPTTGRVYCKVYYCKEDEVCLYQPLTFEVPFQEVNPDFAPAMITLAFDVKPKTSPTSLQIPAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="102894" e_stop="102959"/>
            <exon e_start="103034" e_stop="103098"/>
            <exon e_start="104890" e_stop="104983"/>
            <exon e_start="105156" e_stop="105847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.970"/>
          <exon-intron don_prob="0.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="102894" e_stop="102959" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102960" i_stop="103033" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103034" e_stop="103098" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="103099" i_stop="104889" i_length="1791"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104890" e_stop="104983" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="104984" i_stop="105155" i_length="172"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="105156" e_stop="105847" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102894" stop="102959"/>
              <exon start="103034" stop="103098"/>
              <exon start="104890" stop="104983"/>
              <exon start="105156" stop="105847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAGCACAGGAGCAGAGGGTCTTCATGACGGTAACTTTGATGATGCAACATTCAATCGTCCGCAG : GGTTTGGCTTACAATGCAAAGAAGAACCTCTTGTATGTGGCAGATACTGAAAATCATGCTTTAAG : GGTCATTGACTTTGTGAATGAGACAGTGCGGACGCTTGCGGGAAATGGAACAAAAGGTTCTGATTATGAAGGGGGAGGAACTGGAACTGCACAG : CTTCTCAACTCTCCATGGGATGTCTGCTTTGAACCTGAGAATGAAATTGTCTACATCGCAATGGCTGGTCAGCATCAGATCTGGGAACACAAAACATTGGATGGAGTTACAAGAGCTTTCAGTGGGAATGGTTATGAGAGAAATTTGAATGGCTCAAGGTAATGTGTGTGTGTTAGCTTAACTAGAGTTTCAGCAGAACACTGGTTAATTGTGCTAGTTTTTTATATGAGATTGAAGTGTAGTTTATTGATTAATTCTTAAATGCTATGATGCTCACTATCATCATCTGTTTGTCACACTTTCTTTTGTGGTGCTTTTTACTTCTAAACTAGTTTCCAAGCCTTTTTGAAGAAAAGGGTTTCCCCCTTTTTATTAGAAAAAAGATCCATGTGTTAATCTAGCGCGAGGGAGAACCAACTGAGGACCAGATCTTTCACTGATAAACAAAGACAGAAACAAACTGCAGTTCACACTTTTTTGATTCACTGCTTTACACTTGCTCTATAAATCTATCAGCGTAGTCATATTTTAGGACTGCATAGATATGTCTCTTCTTTTGACTTGCCCGTGTTCTAAAAGATCTCTCATATTTATTAGTGATAACAGTAAGAGTTTTTATAGACTGCACTCTTTTGGCATGGTAAGATCAATTTTCTTCTGAAGGTTCCATTATGAATTTGGAACCCATGTTC</gDNA_template>
            <first_frame> G  S  T  G  A  E  G  L  H  D  G  N  F  D  D  A  T  F  N  R  P  Q  :  G  L  A  Y  N  A  K  K  N  L  L  Y  V  A  D  T  E  N  H  A  L  R :   V  I  D  F  V  N  E  T  V  R  T  L  A  G  N  G  T  K  G  S  D  Y  E  G  G  G  T  G  T  A  Q  :  L  L  N  S  P  W  D  V  C  F  E  P  E  N  E  I  V  Y  I  A  M  A  G  Q  H  Q  I  W  E  H  K  T  L  D  G  V  T  R  A  F  S  G  N  G  Y  E  R  N  L  N  G  S  R  *  C  V  C  V  S  L  T  R  V  S  A  E  H  W  L  I  V  L  V  F  Y  M  R  L  K  C  S  L  L  I  N  S  *  M  L  *  C  S  L  S  S  S  V  C  H  T  F  F  C  G  A  F  Y  F  *  T  S  F  Q  A  F  L  K  K  R  V  S  P  F  L  L  E  K  R  S  M  C  *  S  S  A  R  E  N  Q  L  R  T  R  S  F  T  D  K  Q  R  Q  K  Q  T  A  V  H  T  F  L  I  H  C  F  T  L  A  L  *  I  Y  Q  R  S  H  I  L  G  L  H  R  Y  V  S  S  F  D  L  P  V  F  *  K  I  S  H  I  Y  *  *  *  Q  *  E  F  L  *  T  A  L  F  W  H  G  K  I  N  F  L  L  K  V  P  L  *  I  W  N  P  C   </first_frame>
            <second_frame>  E  A  Q  E  Q  R  V  F  M  T  V  T  L  M  M  Q  H  S  I  V  R  R :   V  W  L  T  M  Q  R  R  T  S  C  M  W  Q  I  L  K  I  M  L  *   : G  S  L  T  L  *  M  R  Q  C  G  R  L  R  E  M  E  Q  K  V  L  I  M  K  G  E  E  L  E  L  H  S :   F  S  T  L  H  G  M  S  A  L  N  L  R  M  K  L  S  T  S  Q  W  L  V  S  I  R  S  G  N  T  K  H  W  M  E  L  Q  E  L  S  V  G  M  V  M  R  E  I  *  M  A  Q  G  N  V  C  V  L  A  *  L  E  F  Q  Q  N  T  G  *  L  C  *  F  F  I  *  D  *  S  V  V  Y  *  L  I  L  K  C  Y  D  A  H  Y  H  H  L  F  V  T  L  S  F  V  V  L  F  T  S  K  L  V  S  K  P  F  *  R  K  G  F  P  P  F  Y  *  K  K  D  P  C  V  N  L  A  R  G  R  T  N  *  G  P  D  L  S  L  I  N  K  D  R  N  K  L  Q  F  T  L  F  *  F  T  A  L  H  L  L  Y  K  S  I  S  V  V  I  F  *  D  C  I  D  M  S  L  L  L  T  C  P  C  S  K  R  S  L  I  F  I  S  D  N  S  K  S  F  Y  R  L  H  S  F  G  M  V  R  S  I  F  F  *  R  F  H  Y  E  F  G  T  H  V  </second_frame>
            <third_frame>   K  H  R  S  R  G  S  S  *  R  *  L  *  *  C  N  I  Q  S  S  A   : G  F  G  L  Q  C  K  E  E  P  L  V  C  G  R  Y  *  K  S  C  F  K  :  G  H  *  L  C  E  *  D  S  A  D  A  C  G  K  W  N  K  R  F  *  L  *  R  G  R  N  W  N  C  T   : A  S  Q  L  S  M  G  C  L  L  *  T  *  E  *  N  C  L  H  R  N  G  W  S  A  S  D  L  G  T  Q  N  I  G  W  S  Y  K  S  F  Q  W  E  W  L  *  E  K  F  E  W  L  K  V  M  C  V  C  *  L  N  *  S  F  S  R  T  L  V  N  C  A  S  F  L  Y  E  I  E  V  *  F  I  D  *  F  L  N  A  M  M  L  T  I  I  I  C  L  S  H  F  L  L  W  C  F  L  L  L  N  *  F  P  S  L  F  E  E  K  G  F  P  L  F  I  R  K  K  I  H  V  L  I  *  R  E  G  E  P  T  E  D  Q  I  F  H  *  *  T  K  T  E  T  N  C  S  S  H  F  F  D  S  L  L  Y  T  C  S  I  N  L  S  A  *  S  Y  F  R  T  A  *  I  C  L  F  F  *  L  A  R  V  L  K  D  L  S  Y  L  L  V  I  T  V  R  V  F  I  D  C  T  L  L  A  W  *  D  Q  F  S  S  E  G  S  I  M  N  L  E  P  M  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102894" stop="102959"/>
                    <exon start="103034" stop="103098"/>
                    <exon start="104890" stop="104983"/>
                    <exon start="105156" stop="105317"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSTGAEGLHDGNFDDATFNRPQGLAYNAKKNLLYVADTENHALRVIDFVNETVRTLAGNGTKGSDYEGGGTGTAQLLNSPWDVCFEPENEIVYIAMAGQHQIWEHKTLDGVTRAFSGNGYERNLNGSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="102470" e_stop="102757"/>
            <exon e_start="102855" e_stop="102959"/>
            <exon e_start="103034" e_stop="103098"/>
            <exon e_start="104890" e_stop="104983"/>
            <exon e_start="105156" e_stop="105313"/>
            <exon e_start="106239" e_stop="106288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.703" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.513" acc_prob="0.000" e_score="0.981"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102470" e_stop="102757" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.703">
            <gDNA_intron_boundary i_start="102758" i_stop="102854" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102855" e_stop="102959" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102960" i_stop="103033" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103034" e_stop="103098" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="103099" i_stop="104889" i_length="1791"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="104890" e_stop="104983" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="104984" i_stop="105155" i_length="172"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="105156" e_stop="105313" e_length="158"/>
          </exon>
          <intron i_serial="5" don_prob="0.513" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105314" i_stop="106238" i_length="925"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="106239" e_stop="106288" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102470" stop="102757"/>
              <exon start="102855" stop="102959"/>
              <exon start="103034" stop="103098"/>
              <exon start="104890" stop="104983"/>
              <exon start="105156" stop="105313"/>
              <exon start="106239" stop="106288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264537" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATGTACATTTTGTTTCTTTTACTCGACTCTTACGGAACTGGTTCCTTCTTCTTTGTGGGAGACTCACAAGTTGTGTAGGAAATTATGTTTTCTTCTAGATACATTCTGGTTCTTCTTTGCTCTCTTCTGAACTTATTCATTCTGTTATTTAGTTCCTTCTTACATTTCCTAGTCTCAAGAACACGGCCATGTTTTCTCGTCTGATACTGTTTTCTTTTCCATACACTATCTCAGTAACTCGGAGTTGTAGTATCACATCTGTTCTGGTCCTTCATGCTTTTGGCCT : GTAGTAACTGATCTAGAAGGGAACTTTTTAGTCCAAGTTGGAAGCACAGGAGCAGAGGGTCTTCATGACGGTAACTTTGATGATGCAACATTCAATCGTCCGCAG : GGTTTGGCTTACAATGCAAAGAAGAACCTCTTGTATGTGGCAGATACTGAAAATCATGCTTTAAG : GGTCATTGACTTTGTGAATGAGACAGTGCGGACGCTTGCGGGAAATGGAACAAAAGGTTCTGATTATGAAGGGGGAGGAACTGGAACTGCACAG : CTTCTCAACTCTCCATGGGATGTCTGCTTTGAACCTGAGAATGAAATTGTCTACATCGCAATGGCTGGTCAGCATCAGATCTGGGAACACAAAACATTGGATGGAGTTACAAGAGCTTTCAGTGGGAATGGTTATGAGAGAAATTTGAATGGCTCAAG : CTCTACAAGCACGTCATTTGCACAACCTTCTGGGATTTCCTTGTCACGAG</gDNA_template>
            <first_frame> K  C  T  F  C  F  F  Y  S  T  L  T  E  L  V  P  S  S  L  W  E  T  H  K  L  C  R  K  L  C  F  L  L  D  T  F  W  F  F  F  A  L  F  *  T  Y  S  F  C  Y  L  V  P  S  Y  I  S  *  S  Q  E  H  G  H  V  F  S  S  D  T  V  F  F  S  I  H  Y  L  S  N  S  E  L  *  Y  H  I  C  S  G  P  S  C  F  W  P  :  V  V  T  D  L  E  G  N  F  L  V  Q  V  G  S  T  G  A  E  G  L  H  D  G  N  F  D  D  A  T  F  N  R  P  Q  :  G  L  A  Y  N  A  K  K  N  L  L  Y  V  A  D  T  E  N  H  A  L  R :   V  I  D  F  V  N  E  T  V  R  T  L  A  G  N  G  T  K  G  S  D  Y  E  G  G  G  T  G  T  A  Q  :  L  L  N  S  P  W  D  V  C  F  E  P  E  N  E  I  V  Y  I  A  M  A  G  Q  H  Q  I  W  E  H  K  T  L  D  G  V  T  R  A  F  S  G  N  G  Y  E  R  N  L  N  G  S  S :   S  T  S  T  S  F  A  Q  P  S  G  I  S  L  S  R  </first_frame>
            <second_frame>  N  V  H  F  V  S  F  T  R  L  L  R  N  W  F  L  L  L  C  G  R  L  T  S  C  V  G  N  Y  V  F  F  *  I  H  S  G  S  S  L  L  S  S  E  L  I  H  S  V  I  *  F  L  L  T  F  P  S  L  K  N  T  A  M  F  S  R  L  I  L  F  S  F  P  Y  T  I  S  V  T  R  S  C  S  I  T  S  V  L  V  L  H  A  F  G  L :   *  *  L  I  *  K  G  T  F  *  S  K  L  E  A  Q  E  Q  R  V  F  M  T  V  T  L  M  M  Q  H  S  I  V  R  R :   V  W  L  T  M  Q  R  R  T  S  C  M  W  Q  I  L  K  I  M  L  *   : G  S  L  T  L  *  M  R  Q  C  G  R  L  R  E  M  E  Q  K  V  L  I  M  K  G  E  E  L  E  L  H  S :   F  S  T  L  H  G  M  S  A  L  N  L  R  M  K  L  S  T  S  Q  W  L  V  S  I  R  S  G  N  T  K  H  W  M  E  L  Q  E  L  S  V  G  M  V  M  R  E  I  *  M  A  Q   : A  L  Q  A  R  H  L  H  N  L  L  G  F  P  C  H  E </second_frame>
            <third_frame>   M  Y  I  L  F  L  L  L  D  S  Y  G  T  G  S  F  F  F  V  G  D  S  Q  V  V  *  E  I  M  F  S  S  R  Y  I  L  V  L  L  C  S  L  L  N  L  F  I  L  L  F  S  S  F  L  H  F  L  V  S  R  T  R  P  C  F  L  V  *  Y  C  F  L  F  H  T  L  S  Q  *  L  G  V  V  V  S  H  L  F  W  S  F  M  L  L  A   : C  S  N  *  S  R  R  E  L  F  S  P  S  W  K  H  R  S  R  G  S  S  *  R  *  L  *  *  C  N  I  Q  S  S  A   : G  F  G  L  Q  C  K  E  E  P  L  V  C  G  R  Y  *  K  S  C  F  K  :  G  H  *  L  C  E  *  D  S  A  D  A  C  G  K  W  N  K  R  F  *  L  *  R  G  R  N  W  N  C  T   : A  S  Q  L  S  M  G  C  L  L  *  T  *  E  *  N  C  L  H  R  N  G  W  S  A  S  D  L  G  T  Q  N  I  G  W  S  Y  K  S  F  Q  W  E  W  L  *  E  K  F  E  W  L  K  :  L  Y  K  H  V  I  C  T  T  F  W  D  F  L  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102722" stop="102757"/>
                    <exon start="102855" stop="102959"/>
                    <exon start="103034" stop="103098"/>
                    <exon start="104890" stop="104983"/>
                    <exon start="105156" stop="105313"/>
                    <exon start="106239" stop="106287"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YHICSGPSCFWPVVTDLEGNFLVQVGSTGAEGLHDGNFDDATFNRPQGLAYNAKKNLLYVADTENHALRVIDFVNETVRTLAGNGTKGSDYEGGGTGTAQLLNSPWDVCFEPENEIVYIAMAGQHQIWEHKTLDGVTRAFSGNGYERNLNGSSSTSTSFAQPSGISLSR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="116913" PGL_stop="118250"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116913" e_stop="117035"/>
            <exon e_start="117333" e_stop="118250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116913" e_stop="117035" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="117036" i_stop="117332" i_length="297"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="117333" e_stop="118250" e_length="918"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116913" stop="117035"/>
              <exon start="117333" stop="117633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116941" stop="117035"/>
              <exon start="117333" stop="117905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116950" stop="117035"/>
              <exon start="117333" stop="118134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116950" stop="117035"/>
              <exon start="117333" stop="118134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116950" stop="117035"/>
              <exon start="117333" stop="118086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116956" stop="117035"/>
              <exon start="117333" stop="117854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116959" stop="117035"/>
              <exon start="117333" stop="118085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116960" stop="117035"/>
              <exon start="117333" stop="117649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116962" stop="117035"/>
              <exon start="117333" stop="118035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116962" stop="117035"/>
              <exon start="117333" stop="118035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116962" stop="117035"/>
              <exon start="117333" stop="117970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116962" stop="117035"/>
              <exon start="117333" stop="117881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116962" stop="117035"/>
              <exon start="117333" stop="117838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116966" stop="117035"/>
              <exon start="117333" stop="117992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116979" stop="117035"/>
              <exon start="117333" stop="118113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116981" stop="117035"/>
              <exon start="117333" stop="117731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117027" stop="117035"/>
              <exon start="117333" stop="118053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117027" stop="117035"/>
              <exon start="117333" stop="117990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117347" stop="118006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117423" stop="117816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117508" stop="118244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117553" stop="118179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117600" stop="118250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117766" stop="118188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613194" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGCCTCTTCCCCCTCTCATTTCCTTCAAACTCTTCTCCCCCATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAAACTCAAAACTCAG : TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTCTTTTTTTTCTAATTCTTTTTTAATTTCTAAAACCCTTTTTTTATTTTTGTTAATAATTGAGAGTTTTTATATTGGTGTATTTTATTGTATACATTCCTTTTCTTCCCTGTTTCGCTCTCATAGTTTCCACCTTGTCCACCCTTTTTTATTATTATTATTATTCCTTTAATTTCTTAGTATTTAC</gDNA_template>
            <first_frame> S  P  L  P  P  L  I  S  F  K  L  F  S  P  I  S  L  S  L  S  T  *  S  F  S  P  P  P  P  T  A  A  V  S  A  V  K  L  K  T  Q  :  F  A  S  I  Y  R  R  E  A  N  V  Q  F  A  R  I  I  P  N  F  A  S  E  N  C  S  F  *  W  R  H  L  K  P  S  R  I  P  M  L  T  P  V  T  R  E  N  P  S  A  K  R  E  E  K  L  E  M  M  G  K  L  S  N  K  R  A  L  I  N  P  G  G  E  R  I  P  S  N  R  S  T  L  Q  S  F  S  R  L  S  V  T  F  A  G  V  M  T  I  H  L  R  L  M  P  D  A  P  S  G  R  P  P  T  E  S  S  P  L  Q  R  R  E  E  V  V  G  A  E  R  F  S  L  A  V  S  A  S  G  L  A  K  S  I  K  S  I  R  K  Q  N  *  I  A  A  I  *  N  Q  R  N  Q  R  R  R  S  D  C  L  L  C  N  G  K  F  V  F  S  A  V  *  F  P  V  V  R  N  S  R  L  R  T  F  *  K  K  L  T  T  T  Y  Q  L  Y  R  C  K  S  K  P  *  L  F  *  P  A  S  S  P  P  V  E  Q  D  Q  L  P  L  T  P  I  G  S  A  K  W  L  V  T  T  C  P  L  F  S  F  F  S  N  S  F  L  I  S  K  T  L  F  L  F  L  L  I  I  E  S  F  Y  I  G  V  F  Y  C  I  H  S  F  S  S  L  F  R  S  H  S  F  H  L  V  H  P  F  L  L  L  L  L  F  L  *  F  L  S  I  Y </first_frame>
            <second_frame>  R  L  F  P  L  S  F  P  S  N  S  S  P  P  S  L  S  L  S  L  H  N  P  S  L  L  R  H  L  P  P  P  S  P  P  S  N  S  K  L  S :   L  H  L  F  T  E  E  K  Q  T  Y  N  S  R  E  S  F  R  I  L  H  Q  K  I  V  P  S  D  G  V  I  S  N  R  L  E  S  R  C  *  L  Q  S  L  A  R  I  Q  A  Q  K  E  K  K  N  W  R  *  W  G  N  *  A  T  N  E  P  *  S  I  Q  V  E  N  G  Y  R  A  T  D  L  L  F  K  A  S  P  G  S  P  S  R  S  P  E  *  *  Q  S  I  S  G  *  C  R  T  R  R  Q  G  D  R  R  Q  S  P  R  R  Y  S  E  G  K  K  S  L  E  Q  S  D  S  H  W  P  S  Q  P  Q  A  *  P  N  Q  *  K  A  *  E  S  K  T  E  *  R  Q  Y  K  I  K  E  T  S  G  E  E  A  I  A  C  F  A  T  E  S  S  C  S  R  P  F  S  S  R  L  S  E  T  P  V  Y  E  P  S  R  R  N  *  R  L  H  I  S  S  T  D  A  N  Q  S  H  D  F  S  D  R  P  P  L  R  R  W  S  R  I  S  C  R  S  P  R  S  A  R  L  S  G  L  L  Q  H  V  L  F  F  L  F  F  L  I  L  F  *  F  L  K  P  F  F  Y  F  C  *  *  L  R  V  F  I  L  V  Y  F  I  V  Y  I  P  F  L  P  C  F  A  L  I  V  S  T  L  S  T  L  F  Y  Y  Y  Y  Y  S  F  N  F  L  V  F   </second_frame>
            <third_frame>   A  S  S  P  S  H  F  L  Q  T  L  L  P  H  L  S  L  S  L  Y  I  I  L  L  S  S  A  T  Y  R  R  R  L  R  R  Q  T  Q  N  S   : V  C  I  Y  L  Q  K  R  S  K  R  T  I  R  E  N  H  S  E  F  C  I  R  K  L  F  L  L  M  A  S  S  Q  T  V  S  N  P  D  V  N  S  S  H  S  R  E  S  K  R  K  K  R  R  K  I  G  D  D  G  E  I  E  Q  Q  T  S  L  D  Q  S  R  W  R  T  D  T  E  Q  Q  I  Y  S  S  K  L  L  Q  A  L  R  H  V  R  R  S  N  D  N  P  S  P  V  N  A  G  R  A  V  R  E  T  A  D  R  V  L  A  V  T  A  K  G  R  S  R  W  S  R  A  I  L  T  G  R  L  S  L  R  L  S  Q  I  N  K  K  H  K  K  A  K  L  N  S  G  N  I  K  S  K  K  P  A  A  K  K  R  L  P  A  L  Q  R  K  V  R  V  L  G  R  L  V  P  G  C  Q  K  L  P  F  T  N  L  L  E  E  T  N  D  Y  I  S  A  L  Q  M  Q  I  K  A  M  T  F  L  T  G  L  L  S  A  G  G  A  G  S  V  A  A  H  P  D  R  L  G  *  V  A  C  Y  N  M  S  S  F  F  F  F  F  *  F  F  F  N  F  *  N  P  F  F  I  F  V  N  N  *  E  F  L  Y  W  C  I  L  L  Y  T  F  L  F  F  P  V  S  L  S  *  F  P  P  C  P  P  F  F  I  I  I  I  I  P  L  I  S  *  Y  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116915" stop="117035"/>
                    <exon start="117333" stop="118036"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSPSHFLQTLLPHLSLSLYIILLSSATYRRRLRRQTQNSVCIYLQKRSKRTIRENHSEFCIRKLFLLMASSQTVSNPDVNSSHSRESKRKKRRKIGDDGEIEQQTSLDQSRWRTDTEQQIYSSKLLQALRHVRRSNDNPSPVNAGRAVRETADRVLAVTAKGRSRWSRAILTGRLSLRLSQINKKHKKAKLNSGNIKSKKPAAKKRLPALQRKVRVLGRLVPGCQKLPFTNLLEETNDYISALQMQIKAMTFLTGLLSAGGAGSVAAHPDRLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="116945" e_stop="117022"/>
            <exon e_start="117333" e_stop="118250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.814"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.814">
            <gDNA_exon_boundary e_start="116945" e_stop="117022" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="117023" i_stop="117332" i_length="310"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="117333" e_stop="118250" e_length="918"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116945" stop="117022"/>
              <exon start="117333" stop="117989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116947" stop="117022"/>
              <exon start="117333" stop="117977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116948" stop="117022"/>
              <exon start="117333" stop="117788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116953" stop="117022"/>
              <exon start="117333" stop="117850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116954" stop="117022"/>
              <exon start="117333" stop="117834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117347" stop="118006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117423" stop="117816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117508" stop="118244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117553" stop="118179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117600" stop="118250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117766" stop="118188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613194" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTCCCCCATCTCTCTCTCTCTCTCTACATAATCCTTCTCTCCTCCGCCACCTACCGCCGCCGTCTCCGCCGTCAA : TTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTCTTTTTTTTCTAATTCTTTTTTAATTTCTAAAACCCTTTTTTTATTTTTGTTAATAATTGAGAGTTTTTATATTGGTGTATTTTATTGTATACATTCCTTTTCTTCCCTGTTTCGCTCTCATAGTTTCCACCTTGTCCACCCTTTTTTATTATTATTATTATTCCTTTAATTTCTTAGTATTTAC</gDNA_template>
            <first_frame> L  L  P  H  L  S  L  S  L  Y  I  I  L  L  S  S  A  T  Y  R  R  R  L  R  R  Q  :  F  A  S  I  Y  R  R  E  A  N  V  Q  F  A  R  I  I  P  N  F  A  S  E  N  C  S  F  *  W  R  H  L  K  P  S  R  I  P  M  L  T  P  V  T  R  E  N  P  S  A  K  R  E  E  K  L  E  M  M  G  K  L  S  N  K  R  A  L  I  N  P  G  G  E  R  I  P  S  N  R  S  T  L  Q  S  F  S  R  L  S  V  T  F  A  G  V  M  T  I  H  L  R  L  M  P  D  A  P  S  G  R  P  P  T  E  S  S  P  L  Q  R  R  E  E  V  V  G  A  E  R  F  S  L  A  V  S  A  S  G  L  A  K  S  I  K  S  I  R  K  Q  N  *  I  A  A  I  *  N  Q  R  N  Q  R  R  R  S  D  C  L  L  C  N  G  K  F  V  F  S  A  V  *  F  P  V  V  R  N  S  R  L  R  T  F  *  K  K  L  T  T  T  Y  Q  L  Y  R  C  K  S  K  P  *  L  F  *  P  A  S  S  P  P  V  E  Q  D  Q  L  P  L  T  P  I  G  S  A  K  W  L  V  T  T  C  P  L  F  S  F  F  S  N  S  F  L  I  S  K  T  L  F  L  F  L  L  I  I  E  S  F  Y  I  G  V  F  Y  C  I  H  S  F  S  S  L  F  R  S  H  S  F  H  L  V  H  P  F  L  L  L  L  L  F  L  *  F  L  S  I  Y </first_frame>
            <second_frame>  F  S  P  I  S  L  S  L  S  T  *  S  F  S  P  P  P  P  T  A  A  V  S  A  V  N :   L  H  L  F  T  E  E  K  Q  T  Y  N  S  R  E  S  F  R  I  L  H  Q  K  I  V  P  S  D  G  V  I  S  N  R  L  E  S  R  C  *  L  Q  S  L  A  R  I  Q  A  Q  K  E  K  K  N  W  R  *  W  G  N  *  A  T  N  E  P  *  S  I  Q  V  E  N  G  Y  R  A  T  D  L  L  F  K  A  S  P  G  S  P  S  R  S  P  E  *  *  Q  S  I  S  G  *  C  R  T  R  R  Q  G  D  R  R  Q  S  P  R  R  Y  S  E  G  K  K  S  L  E  Q  S  D  S  H  W  P  S  Q  P  Q  A  *  P  N  Q  *  K  A  *  E  S  K  T  E  *  R  Q  Y  K  I  K  E  T  S  G  E  E  A  I  A  C  F  A  T  E  S  S  C  S  R  P  F  S  S  R  L  S  E  T  P  V  Y  E  P  S  R  R  N  *  R  L  H  I  S  S  T  D  A  N  Q  S  H  D  F  S  D  R  P  P  L  R  R  W  S  R  I  S  C  R  S  P  R  S  A  R  L  S  G  L  L  Q  H  V  L  F  F  L  F  F  L  I  L  F  *  F  L  K  P  F  F  Y  F  C  *  *  L  R  V  F  I  L  V  Y  F  I  V  Y  I  P  F  L  P  C  F  A  L  I  V  S  T  L  S  T  L  F  Y  Y  Y  Y  Y  S  F  N  F  L  V  F   </second_frame>
            <third_frame>   S  P  P  S  L  S  L  S  L  H  N  P  S  L  L  R  H  L  P  P  P  S  P  P  S   : I  C  I  Y  L  Q  K  R  S  K  R  T  I  R  E  N  H  S  E  F  C  I  R  K  L  F  L  L  M  A  S  S  Q  T  V  S  N  P  D  V  N  S  S  H  S  R  E  S  K  R  K  K  R  R  K  I  G  D  D  G  E  I  E  Q  Q  T  S  L  D  Q  S  R  W  R  T  D  T  E  Q  Q  I  Y  S  S  K  L  L  Q  A  L  R  H  V  R  R  S  N  D  N  P  S  P  V  N  A  G  R  A  V  R  E  T  A  D  R  V  L  A  V  T  A  K  G  R  S  R  W  S  R  A  I  L  T  G  R  L  S  L  R  L  S  Q  I  N  K  K  H  K  K  A  K  L  N  S  G  N  I  K  S  K  K  P  A  A  K  K  R  L  P  A  L  Q  R  K  V  R  V  L  G  R  L  V  P  G  C  Q  K  L  P  F  T  N  L  L  E  E  T  N  D  Y  I  S  A  L  Q  M  Q  I  K  A  M  T  F  L  T  G  L  L  S  A  G  G  A  G  S  V  A  A  H  P  D  R  L  G  *  V  A  C  Y  N  M  S  S  F  F  F  F  F  *  F  F  F  N  F  *  N  P  F  F  I  F  V  N  N  *  E  F  L  Y  W  C  I  L  L  Y  T  F  L  F  F  P  V  S  L  S  *  F  P  P  C  P  P  F  F  I  I  I  I  I  P  L  I  S  *  Y  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116947" stop="117022"/>
                    <exon start="117333" stop="118036"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPPSLSLSLHNPSLLRHLPPPSPPSICIYLQKRSKRTIRENHSEFCIRKLFLLMASSQTVSNPDVNSSHSRESKRKKRRKIGDDGEIEQQTSLDQSRWRTDTEQQIYSSKLLQALRHVRRSNDNPSPVNAGRAVRETADRVLAVTAKGRSRWSRAILTGRLSLRLSQINKKHKKAKLNSGNIKSKKPAAKKRLPALQRKVRVLGRLVPGCQKLPFTNLLEETNDYISALQMQIKAMTFLTGLLSAGGAGSVAAHPDRLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="117332" e_stop="118250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="117332" e_stop="118250" e_length="919"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117332" stop="117964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117347" stop="118006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117423" stop="117816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117508" stop="118244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117553" stop="118179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117600" stop="118250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117766" stop="118188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613194" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGCATCTATTTACAGAAGAGAAGCAAACGTACAATTCGCGAGAATCATTCCGAATTTTGCATCAGAAAATTGTTCCTTCTGATGGCGTCATCTCAAACCGTCTCGAATCCCGATGTTAACTCCAGTCACTCGCGAGAATCCAAGCGCAAAAAGAGAAGAAAAATTGGAGATGATGGGGAAATTGAGCAACAAACGAGCCTTGATCAATCCAGGTGGAGAACGGATACCGAGCAACAGATCTACTCTTCAAAGCTTCTCCAGGCTCTCCGTCACGTTCGCCGGAGTAATGACAATCCATCTCCGGTTAATGCCGGACGCGCCGTCAGGGAGACCGCCGACAGAGTCCTCGCCGTTACAGCGAAGGGAAGAAGTCGTTGGAGCAGAGCGATTCTCACTGGCCGTCTCAGCCTCAGGCTTAGCCAAATCAATAAAAAGCATAAGAAAGCAAAACTGAATAGCGGCAATATAAAATCAAAGAAACCAGCGGCGAAGAAGCGATTGCCTGCTTTGCAACGGAAAGTTCGTGTTCTCGGCCGTTTAGTTCCCGGTTGTCAGAAACTCCCGTTTACGAACCTTCTAGAAGAAACTAACGACTACATATCAGCTCTACAGATGCAAATCAAAGCCATGACTTTTCTGACCGGCCTCCTCTCCGCCGGTGGAGCAGGATCAGTTGCCGCTCACCCCGATCGGCTCGGCTAAGTGGCTTGTTACAACATGTCCTCTTTTTTCTTTTTTTTCTAATTCTTTTTTAATTTCTAAAACCCTTTTTTTATTTTTGTTAATAATTGAGAGTTTTTATATTGGTGTATTTTATTGTATACATTCCTTTTCTTCCCTGTTTCGCTCTCATAGTTTCCACCTTGTCCACCCTTTTTTATTATTATTATTATTCCTTTAATTTCTTAGTATTTAC</gDNA_template>
            <first_frame> V  C  I  Y  L  Q  K  R  S  K  R  T  I  R  E  N  H  S  E  F  C  I  R  K  L  F  L  L  M  A  S  S  Q  T  V  S  N  P  D  V  N  S  S  H  S  R  E  S  K  R  K  K  R  R  K  I  G  D  D  G  E  I  E  Q  Q  T  S  L  D  Q  S  R  W  R  T  D  T  E  Q  Q  I  Y  S  S  K  L  L  Q  A  L  R  H  V  R  R  S  N  D  N  P  S  P  V  N  A  G  R  A  V  R  E  T  A  D  R  V  L  A  V  T  A  K  G  R  S  R  W  S  R  A  I  L  T  G  R  L  S  L  R  L  S  Q  I  N  K  K  H  K  K  A  K  L  N  S  G  N  I  K  S  K  K  P  A  A  K  K  R  L  P  A  L  Q  R  K  V  R  V  L  G  R  L  V  P  G  C  Q  K  L  P  F  T  N  L  L  E  E  T  N  D  Y  I  S  A  L  Q  M  Q  I  K  A  M  T  F  L  T  G  L  L  S  A  G  G  A  G  S  V  A  A  H  P  D  R  L  G  *  V  A  C  Y  N  M  S  S  F  F  F  F  F  *  F  F  F  N  F  *  N  P  F  F  I  F  V  N  N  *  E  F  L  Y  W  C  I  L  L  Y  T  F  L  F  F  P  V  S  L  S  *  F  P  P  C  P  P  F  F  I  I  I  I  I  P  L  I  S  *  Y  L  </first_frame>
            <second_frame>  F  A  S  I  Y  R  R  E  A  N  V  Q  F  A  R  I  I  P  N  F  A  S  E  N  C  S  F  *  W  R  H  L  K  P  S  R  I  P  M  L  T  P  V  T  R  E  N  P  S  A  K  R  E  E  K  L  E  M  M  G  K  L  S  N  K  R  A  L  I  N  P  G  G  E  R  I  P  S  N  R  S  T  L  Q  S  F  S  R  L  S  V  T  F  A  G  V  M  T  I  H  L  R  L  M  P  D  A  P  S  G  R  P  P  T  E  S  S  P  L  Q  R  R  E  E  V  V  G  A  E  R  F  S  L  A  V  S  A  S  G  L  A  K  S  I  K  S  I  R  K  Q  N  *  I  A  A  I  *  N  Q  R  N  Q  R  R  R  S  D  C  L  L  C  N  G  K  F  V  F  S  A  V  *  F  P  V  V  R  N  S  R  L  R  T  F  *  K  K  L  T  T  T  Y  Q  L  Y  R  C  K  S  K  P  *  L  F  *  P  A  S  S  P  P  V  E  Q  D  Q  L  P  L  T  P  I  G  S  A  K  W  L  V  T  T  C  P  L  F  S  F  F  S  N  S  F  L  I  S  K  T  L  F  L  F  L  L  I  I  E  S  F  Y  I  G  V  F  Y  C  I  H  S  F  S  S  L  F  R  S  H  S  F  H  L  V  H  P  F  L  L  L  L  L  F  L  *  F  L  S  I  Y </second_frame>
            <third_frame>   L  H  L  F  T  E  E  K  Q  T  Y  N  S  R  E  S  F  R  I  L  H  Q  K  I  V  P  S  D  G  V  I  S  N  R  L  E  S  R  C  *  L  Q  S  L  A  R  I  Q  A  Q  K  E  K  K  N  W  R  *  W  G  N  *  A  T  N  E  P  *  S  I  Q  V  E  N  G  Y  R  A  T  D  L  L  F  K  A  S  P  G  S  P  S  R  S  P  E  *  *  Q  S  I  S  G  *  C  R  T  R  R  Q  G  D  R  R  Q  S  P  R  R  Y  S  E  G  K  K  S  L  E  Q  S  D  S  H  W  P  S  Q  P  Q  A  *  P  N  Q  *  K  A  *  E  S  K  T  E  *  R  Q  Y  K  I  K  E  T  S  G  E  E  A  I  A  C  F  A  T  E  S  S  C  S  R  P  F  S  S  R  L  S  E  T  P  V  Y  E  P  S  R  R  N  *  R  L  H  I  S  S  T  D  A  N  Q  S  H  D  F  S  D  R  P  P  L  R  R  W  S  R  I  S  C  R  S  P  R  S  A  R  L  S  G  L  L  Q  H  V  L  F  F  L  F  F  L  I  L  F  *  F  L  K  P  F  F  Y  F  C  *  *  L  R  V  F  I  L  V  Y  F  I  V  Y  I  P  F  L  P  C  F  A  L  I  V  S  T  L  S  T  L  F  Y  Y  Y  Y  Y  S  F  N  F  L  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117332" stop="118036"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCIYLQKRSKRTIRENHSEFCIRKLFLLMASSQTVSNPDVNSSHSRESKRKKRRKIGDDGEIEQQTSLDQSRWRTDTEQQIYSSKLLQALRHVRRSNDNPSPVNAGRAVRETADRVLAVTAKGRSRWSRAILTGRLSLRLSQINKKHKKAKLNSGNIKSKKPAAKKRLPALQRKVRVLGRLVPGCQKLPFTNLLEETNDYISALQMQIKAMTFLTGLLSAGGAGSVAAHPDRLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="118184" PGL_stop="117723"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118184" e_stop="117723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="118184" e_stop="117723" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118184" stop="117723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGCGAAACAGGGAAGAAAAGGAATGTATACAATAAAATACACCAATATAAAAACTCTCAATTATTAACAAAAATAAAAAAAGGGTTTTAGAAATTAAAAAAGAATTAGAAAAAAAAGAAAAAAGAGGACATGTTGTAACAAGCCACTTAGCCGAGCCGATCGGGGTGAGCGGCAACTGATCCTGCTCCACCGGCGGAGAGGAGGCCGGTCAGAAAAGTCATGGCTTTGATTTGCATCTGTAGAGCTGATATGTAGTCGTTAGTTTCTTCTAGAAGGTTCGTAAACGGGAGTTTCTGACAACCGGGAACTAAACGGCCGAGAACACGAACTTTCCGTTGCAAAGCAGGCAATCGCTTCTTCGCCGCTGGTTTCTTTGATTTTATATTGCCGCTATTCAGTTTTGCTTTCTTATGCTTTTTATTGATTTGGCTAAGCCTGAGGCTGAGACGGCCAGTGAGAA</gDNA_template>
            <first_frame> R  A  K  Q  G  R  K  G  M  Y  T  I  K  Y  T  N  I  K  T  L  N  Y  *  Q  K  *  K  K  G  F  R  N  *  K  R  I  R  K  K  R  K  K  R  T  C  C  N  K  P  L  S  R  A  D  R  G  E  R  Q  L  I  L  L  H  R  R  R  G  G  R  S  E  K  S  W  L  *  F  A  S  V  E  L  I  C  S  R  *  F  L  L  E  G  S  *  T  G  V  S  D  N  R  E  L  N  G  R  E  H  E  L  S  V  A  K  Q  A  I  A  S  S  P  L  V  S  L  I  L  Y  C  R  Y  S  V  L  L  S  Y  A  F  Y  *  F  G  *  A  *  G  *  D  G  Q  *  E </first_frame>
            <second_frame>  E  R  N  R  E  E  K  E  C  I  Q  *  N  T  P  I  *  K  L  S  I  I  N  K  N  K  K  R  V  L  E  I  K  K  E  L  E  K  K  E  K  R  G  H  V  V  T  S  H  L  A  E  P  I  G  V  S  G  N  *  S  C  S  T  G  G  E  E  A  G  Q  K  S  H  G  F  D  L  H  L  *  S  *  Y  V  V  V  S  F  F  *  K  V  R  K  R  E  F  L  T  T  G  N  *  T  A  E  N  T  N  F  P  L  Q  S  R  Q  S  L  L  R  R  W  F  L  *  F  Y  I  A  A  I  Q  F  C  F  L  M  L  F  I  D  L  A  K  P  E  A  E  T  A  S  E   </second_frame>
            <third_frame>   S  E  T  G  K  K  R  N  V  Y  N  K  I  H  Q  Y  K  N  S  Q  L  L  T  K  I  K  K  G  F  *  K  L  K  K  N  *  K  K  K  K  K  E  D  M  L  *  Q  A  T  *  P  S  R  S  G  *  A  A  T  D  P  A  P  P  A  E  R  R  P  V  R  K  V  M  A  L  I  C  I  C  R  A  D  M  *  S  L  V  S  S  R  R  F  V  N  G  S  F  *  Q  P  G  T  K  R  P  R  T  R  T  F  R  C  K  A  G  N  R  F  F  A  A  G  F  F  D  F  I  L  P  L  F  S  F  A  F  L  C  F  L  L  I  W  L  S  L  R  L  R  R  P  V  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0005L21.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="134858" PGL_stop="138166"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134858" e_stop="134894"/>
            <exon e_start="135369" e_stop="135384"/>
            <exon e_start="135841" e_stop="136421"/>
            <exon e_start="137713" e_stop="137957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.919"/>
          <exon-intron don_prob="0.000" acc_prob="0.965" e_score="0.500"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="134858" e_stop="134894" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="134895" i_stop="135368" i_length="474"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="135369" e_stop="135384" e_length="16"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="135385" i_stop="135840" i_length="456"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="135841" e_stop="136421" e_length="581"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="136422" i_stop="137712" i_length="1291"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="137713" e_stop="137957" e_length="245"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134858" stop="134894"/>
              <exon start="135369" stop="135384"/>
              <exon start="135841" stop="136181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135845" stop="136421"/>
              <exon start="137713" stop="137900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395732" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135846" stop="136421"/>
              <exon start="137713" stop="137908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135846" stop="136421"/>
              <exon start="137713" stop="137739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376433" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135849" stop="136421"/>
              <exon start="137713" stop="137752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136117" stop="136421"/>
              <exon start="137713" stop="137957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395733" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136156" stop="136421"/>
              <exon start="137713" stop="137957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376434" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136275" stop="136421"/>
              <exon start="137713" stop="137957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207643" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCACCATTTCCATGGCCAAATCTTACCCTTCGAT : GGTTTGTCCTCTCTAT : CTAAAAGATAGACAACAAACACTTTGGGTTAGCTATGGATCATATACAGTCGAGGGAAAGTGATTTCGAGGTAGATTTAGAGAGTGGGGGAACAACTAGTGATGAAGATGGCAGTTATAACTATGATCTGACTGGTGAAATTTCTAATAGAGAGTCGTATAAAGCGGGTAGTGAGTTTCGTGGAGTTCAATCGTGCAATGGATCTGTAAGGAACCAAGACGGTTCAAGTACATATAACAAAAGTTTAAGTGCTGATGAGCTATCATCTGTTAGGCGTACAGAAATTTTGTCAAACAAAGTGAAGGAAGAGATAGAAAAGTTGGGTGACAAAAAAATGAATATCGACAAATCAAGGAAGCCAAAGCCTGCTAAACCACCTAGACCCCCAAAGGGTCCAGCACTGGACGCCTCTGATGCAAAGTTCGTCAAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATTAAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAG : GTGTTTTGGGCTCTCGTGTATGACACCAGTGTGTATGTCGCCTTTAAATTCAGAGGGTAGGTTCACATACAACTTCTTTTTAACTTCTCTGTTCGACTGGTTTATGATATGGCATCTCAAACAGTTTTAGAGGGAGTAACTGGAGATTCCAATCCCCGTAATTTATCTCTTTTCCTTCCATCTTCTGTACAGAAATGTCGGTCGTGTGTTTATTTATGTATTGAAATAGAAACTAGCTTTCACAA</gDNA_template>
            <first_frame> S  S  P  F  P  W  P  N  L  T  L  R   : W  F  V  L  S  I :   *  K  I  D  N  K  H  F  G  L  A  M  D  H  I  Q  S  R  E  S  D  F  E  V  D  L  E  S  G  G  T  T  S  D  E  D  G  S  Y  N  Y  D  L  T  G  E  I  S  N  R  E  S  Y  K  A  G  S  E  F  R  G  V  Q  S  C  N  G  S  V  R  N  Q  D  G  S  S  T  Y  N  K  S  L  S  A  D  E  L  S  S  V  R  R  T  E  I  L  S  N  K  V  K  E  E  I  E  K  L  G  D  K  K  M  N  I  D  K  S  R  K  P  K  P  A  K  P  P  R  P  P  K  G  P  A  L  D  A  S  D  A  K  F  V  K  E  I  S  E  L  A  I  W  K  R  R  R  T  E  R  M  K  A  L  K  K  I  K  K  E  S  G  S  S  S  R  M  N  I  L  A  T  V  I  T  I  L  F  F  L  I  I  I  F  Q   : G  V  L  G  S  R  V  *  H  Q  C  V  C  R  L  *  I  Q  R  V  G  S  H  T  T  S  F  *  L  L  C  S  T  G  L  *  Y  G  I  S  N  S  F  R  G  S  N  W  R  F  Q  S  P  *  F  I  S  F  P  S  I  F  C  T  E  M  S  V  V  C  L  F  M  Y  *  N  R  N  *  L  S  Q </first_frame>
            <second_frame>  L  H  H  F  H  G  Q  I  L  P  F  D  :  G  L  S  S  L   : S  K  R  *  T  T  N  T  L  G  *  L  W  I  I  Y  S  R  G  K  V  I  S  R  *  I  *  R  V  G  E  Q  L  V  M  K  M  A  V  I  T  M  I  *  L  V  K  F  L  I  E  S  R  I  K  R  V  V  S  F  V  E  F  N  R  A  M  D  L  *  G  T  K  T  V  Q  V  H  I  T  K  V  *  V  L  M  S  Y  H  L  L  G  V  Q  K  F  C  Q  T  K  *  R  K  R  *  K  S  W  V  T  K  K  *  I  S  T  N  Q  G  S  Q  S  L  L  N  H  L  D  P  Q  R  V  Q  H  W  T  P  L  M  Q  S  S  S  R  K  Y  L  S  L  L  Y  G  S  V  E  G  Q  K  E  *  R  H  *  R  K  L  K  R  R  A  V  H  L  R  G  *  I  Y  *  Q  R  *  S  Q  F  C  S  S  *  L  L  Y  F  K  :  V  F  W  A  L  V  Y  D  T  S  V  Y  V  A  F  K  F  R  G  *  V  H  I  Q  L  L  F  N  F  S  V  R  L  V  Y  D  M  A  S  Q  T  V  L  E  G  V  T  G  D  S  N  P  R  N  L  S  L  F  L  P  S  S  V  Q  K  C  R  S  C  V  Y  L  C  I  E  I  E  T  S  F  H   </second_frame>
            <third_frame>   F  T  I  S  M  A  K  S  Y  P  S  M :   V  C  P  L  Y  :  L  K  D  R  Q  Q  T  L  W  V  S  Y  G  S  Y  T  V  E  G  K  *  F  R  G  R  F  R  E  W  G  N  N  *  *  *  R  W  Q  L  *  L  *  S  D  W  *  N  F  *  *  R  V  V  *  S  G  *  *  V  S  W  S  S  I  V  Q  W  I  C  K  E  P  R  R  F  K  Y  I  *  Q  K  F  K  C  *  *  A  I  I  C  *  A  Y  R  N  F  V  K  Q  S  E  G  R  D  R  K  V  G  *  Q  K  N  E  Y  R  Q  I  K  E  A  K  A  C  *  T  T  *  T  P  K  G  S  S  T  G  R  L  *  C  K  V  R  Q  G  N  I  *  A  C  Y  M  E  A  *  K  D  R  K  N  E  G  T  E  E  N  *  K  G  E  R  F  I  F  E  D  E  Y  I  S  N  G  D  H  N  S  V  L  L  D  Y  Y  I  S  R :   C  F  G  L  S  C  M  T  P  V  C  M  S  P  L  N  S  E  G  R  F  T  Y  N  F  F  L  T  S  L  F  D  W  F  M  I  W  H  L  K  Q  F  *  R  E  *  L  E  I  P  I  P  V  I  Y  L  F  S  F  H  L  L  Y  R  N  V  G  R  V  F  I  Y  V  L  K  *  K  L  A  F  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135845" stop="136421"/>
                    <exon start="137713" stop="137735"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIDNKHFGLAMDHIQSRESDFEVDLESGGTTSDEDGSYNYDLTGEISNRESYKAGSEFRGVQSCNGSVRNQDGSSTYNKSLSADELSSVRRTEILSNKVKEEIEKLGDKKMNIDKSRKPKPAKPPRPPKGPALDASDAKFVKEISELAIWKRRRTERMKALKKIKKESGSSSRMNILATVITILFFLIIIFQGVLGSRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="134858" e_stop="134894"/>
            <exon e_start="135369" e_stop="135384"/>
            <exon e_start="135841" e_stop="136421"/>
            <exon e_start="137713" e_stop="137768"/>
            <exon e_start="138048" e_stop="138166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.919"/>
          <exon-intron don_prob="0.000" acc_prob="0.965" e_score="0.500"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.993" acc_prob="0.560" e_score="0.946"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="134858" e_stop="134894" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="134895" i_stop="135368" i_length="474"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="135369" e_stop="135384" e_length="16"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="135385" i_stop="135840" i_length="456"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="135841" e_stop="136421" e_length="581"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="136422" i_stop="137712" i_length="1291"/>
          </intron>
          <exon e_serial="4" e_score="0.946">
            <gDNA_exon_boundary e_start="137713" e_stop="137768" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.560">
            <gDNA_intron_boundary i_start="137769" i_stop="138047" i_length="279"/>
          </intron>
          <exon e_serial="5" e_score="0.916">
            <gDNA_exon_boundary e_start="138048" e_stop="138166" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134858" stop="134894"/>
              <exon start="135369" stop="135384"/>
              <exon start="135841" stop="136181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135846" stop="136421"/>
              <exon start="137713" stop="137739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376433" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135849" stop="136421"/>
              <exon start="137713" stop="137752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135943" stop="136421"/>
              <exon start="137713" stop="137768"/>
              <exon start="138048" stop="138166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCACCATTTCCATGGCCAAATCTTACCCTTCGAT : GGTTTGTCCTCTCTAT : CTAAAAGATAGACAACAAACACTTTGGGTTAGCTATGGATCATATACAGTCGAGGGAAAGTGATTTCGAGGTAGATTTAGAGAGTGGGGGAACAACTAGTGATGAAGATGGCAGTTATAACTATGATCTGACTGGTGAAATTTCTAATAGAGAGTCGTATAAAGCGGGTAGTGAGTTTCGTGGAGTTCAATCGTGCAATGGATCTGTAAGGAACCAAGACGGTTCAAGTACATATAACAAAAGTTTAAGTGCTGATGAGCTATCATCTGTTAGGCGTACAGAAATTTTGTCAAACAAAGTGAAGGAAGAGATAGAAAAGTTGGGTGACAAAAAAATGAATATCGACAAATCAAGGAAGCCAAAGCCTGCTAAACCACCTAGACCCCCAAAGGGTCCAGCACTGGACGCCTCTGATGCAAAGTTCGTCAAGGAAATATCTGAGCTTGCTATATGGAAGCGTAGAAGGACAGAAAGAATGAAGGCACTGAAGAAAATTAAAAAGGAGAGCGGTTCATCTTCGAGGATGAATATATTAGCAACGGTGATCACAATTCTGTTCTTCTTGATTATTATATTTCAAG : GTGTTTTGGGCTCTCGTGTATGACACCAGTGTGTATGTCGCCTTTAAATTCAGAGG : GAATTTTACCATGCAACAACCAACTGCTTAACTGTAAGTCAAAATTGCTAACCTAGGGTTACTTGTCACTTTCAACAAGAAGGAAGCACGCTCAATCATTTTACTATACATATTATGTT</gDNA_template>
            <first_frame> S  S  P  F  P  W  P  N  L  T  L  R   : W  F  V  L  S  I :   *  K  I  D  N  K  H  F  G  L  A  M  D  H  I  Q  S  R  E  S  D  F  E  V  D  L  E  S  G  G  T  T  S  D  E  D  G  S  Y  N  Y  D  L  T  G  E  I  S  N  R  E  S  Y  K  A  G  S  E  F  R  G  V  Q  S  C  N  G  S  V  R  N  Q  D  G  S  S  T  Y  N  K  S  L  S  A  D  E  L  S  S  V  R  R  T  E  I  L  S  N  K  V  K  E  E  I  E  K  L  G  D  K  K  M  N  I  D  K  S  R  K  P  K  P  A  K  P  P  R  P  P  K  G  P  A  L  D  A  S  D  A  K  F  V  K  E  I  S  E  L  A  I  W  K  R  R  R  T  E  R  M  K  A  L  K  K  I  K  K  E  S  G  S  S  S  R  M  N  I  L  A  T  V  I  T  I  L  F  F  L  I  I  I  F  Q   : G  V  L  G  S  R  V  *  H  Q  C  V  C  R  L  *  I  Q  R  :  E  F  Y  H  A  T  T  N  C  L  T  V  S  Q  N  C  *  P  R  V  T  C  H  F  Q  Q  E  G  S  T  L  N  H  F  T  I  H  I  M   </first_frame>
            <second_frame>  L  H  H  F  H  G  Q  I  L  P  F  D  :  G  L  S  S  L   : S  K  R  *  T  T  N  T  L  G  *  L  W  I  I  Y  S  R  G  K  V  I  S  R  *  I  *  R  V  G  E  Q  L  V  M  K  M  A  V  I  T  M  I  *  L  V  K  F  L  I  E  S  R  I  K  R  V  V  S  F  V  E  F  N  R  A  M  D  L  *  G  T  K  T  V  Q  V  H  I  T  K  V  *  V  L  M  S  Y  H  L  L  G  V  Q  K  F  C  Q  T  K  *  R  K  R  *  K  S  W  V  T  K  K  *  I  S  T  N  Q  G  S  Q  S  L  L  N  H  L  D  P  Q  R  V  Q  H  W  T  P  L  M  Q  S  S  S  R  K  Y  L  S  L  L  Y  G  S  V  E  G  Q  K  E  *  R  H  *  R  K  L  K  R  R  A  V  H  L  R  G  *  I  Y  *  Q  R  *  S  Q  F  C  S  S  *  L  L  Y  F  K  :  V  F  W  A  L  V  Y  D  T  S  V  Y  V  A  F  K  F  R  G :   N  F  T  M  Q  Q  P  T  A  *  L  *  V  K  I  A  N  L  G  L  L  V  T  F  N  K  K  E  A  R  S  I  I  L  L  Y  I  L  C  </second_frame>
            <third_frame>   F  T  I  S  M  A  K  S  Y  P  S  M :   V  C  P  L  Y  :  L  K  D  R  Q  Q  T  L  W  V  S  Y  G  S  Y  T  V  E  G  K  *  F  R  G  R  F  R  E  W  G  N  N  *  *  *  R  W  Q  L  *  L  *  S  D  W  *  N  F  *  *  R  V  V  *  S  G  *  *  V  S  W  S  S  I  V  Q  W  I  C  K  E  P  R  R  F  K  Y  I  *  Q  K  F  K  C  *  *  A  I  I  C  *  A  Y  R  N  F  V  K  Q  S  E  G  R  D  R  K  V  G  *  Q  K  N  E  Y  R  Q  I  K  E  A  K  A  C  *  T  T  *  T  P  K  G  S  S  T  G  R  L  *  C  K  V  R  Q  G  N  I  *  A  C  Y  M  E  A  *  K  D  R  K  N  E  G  T  E  E  N  *  K  G  E  R  F  I  F  E  D  E  Y  I  S  N  G  D  H  N  S  V  L  L  D  Y  Y  I  S  R :   C  F  G  L  S  C  M  T  P  V  C  M  S  P  L  N  S  E   : G  I  L  P  C  N  N  Q  L  L  N  C  K  S  K  L  L  T  *  G  Y  L  S  L  S  T  R  R  K  H  A  Q  S  F  Y  Y  T  Y  Y  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0005L21.3" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135845" stop="136421"/>
                    <exon start="137713" stop="137735"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIDNKHFGLAMDHIQSRESDFEVDLESGGTTSDEDGSYNYDLTGEISNRESYKAGSEFRGVQSCNGSVRNQDGSSTYNKSLSADELSSVRRTEILSNKVKEEIEKLGDKKMNIDKSRKPKPAKPPRPPKGPALDASDAKFVKEISELAIWKRRRTERMKALKKIKKESGSSSRMNILATVITILFFLIIIFQGVLGSRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 401 chains have been computed
$ 
$ memory statistics:
$ 629600 bytes spliced alignments in total
$ 264 spliced alignments have been stored
$ 2384 bytes was the average size of a spliced alignment
$ 38096 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1904 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 448 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 20:22:26
-->
