<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 06:54:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C01HBa0003D15-wppwW/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591080" ref_strand="+" ref_description="SGN-U591080 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>atgaaccacctcctcctcaagttggccaggtctttcatacttctcatgtangtggaccaccaccaatggaacctaattatgancggcctcactatcctccaccgccnatggagganaactatggtggatcttacaatcgtccaccgccgagatccgattactatgacnccccaccnccaccacctacttccgggtatccctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0003D15.1" temp_strand="+" temp_description="C01HBa0003D15.1  AC193776.1 htgs_phase:3 submitted_to_sgn_as:100406.C143 sequenced_by:cornell upload_account_name:us 100406.assem.ace.1 (whole contig)">
        <position start="7438" stop="8321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7738" g_stop="7837" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7838" i_stop="7918" i_length="81">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7919" g_stop="8021" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="203" r_length="103" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0003D15.1" gen_strand="+" ref_id="SGN-U591080" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0003D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7738" e_stop="7837"/>
          <exon e_start="7919" e_stop="8021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAACCACCTCCTCCTCAAGTTGGCCAGGTCTTTCATACTTCTCATGTAGGTGGACCACCACCAATGGAACCTAATTATGACCGGCCTCACTATCCTCCGCCGCCGATGGATGATAATTATGGTCGGACTGAGTATACGCCACCGATGGATGATATTTATGGTCGGACTAACTATCCGCCACCGCCAATGGAGGAGAACTATGGTGGATCTTACAATCGTCCACCGCCGAGATCCGATTACTATGACGCCCCACCACCACCACCTACTTCCGGGTATCCCTCC</genome_strand>
        <mrna_strand>ATGAACCACCTCCTCCTCAAGTTGGCCAGGTCTTTCATACTTCTCATGTANGTGGACCACCACCAATGGAACCTAATTATGANCGGCCTCACTATCCTCC.................................................................................ACCGCCNATGGAGGANAACTATGGTGGATCTTACAATCGTCCACCGCCGAGATCCGATTACTATGACNCCCCACCNCCACCACCTACTTCCGGGTATCCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572165" ref_strand="+" ref_description="SGN-U572165 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147866287|emb|CAN79927.1| (e_value=9e-52) hypothetical; (*ATH) AT1G14420.1 (e_value=2e-47) | Symbol: None | pectate lyase family protein, similar to pectate lyase P59 SP:P15722 from (Lycopersicon esculentum) | chr1:4931774-4933400 REVERSE | Aliases: F14L17.19, F14L17_19; (*SWP) sp|P40973|PEL_LILLO (e_value=2e-48) Pectate lyase OS=Lilium longiflorum; ">
      <seq>gctgagtttgatccatatttggaaaaacaagctttggaagccctcaactcttcacttgaagcatatactaataatcctgaggaaataactaatgcattcaacaaagaagttggaaatgcattgctgaagtataaaagcttaaggaggcatcttaaagaaaaagataaatgcatggcaaccaatccaattgatagatgctggaggtgtgacaaaaattgggctgaaaacaggatggatttggaagagtgtgctagaggatttggccacaagacgaccggtggtaaaaatggcaagtactatgttgtcactgatgaatcagatgatgacgtgcaggaaccaaaaccagggacccttcgtcatgctgtgattcaagaggagccattgtggatcatctttgagaaatcaatggtgatcaagttgcaacaagaacttatgatcacgagtgacaagacaatcgatggcaggggagtcgctgttcacatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0003D15.1" temp_strand="+" temp_description="C01HBa0003D15.1  AC193776.1 htgs_phase:3 submitted_to_sgn_as:100406.C143 sequenced_by:cornell upload_account_name:us 100406.assem.ace.1 (whole contig)">
        <position start="13773" stop="15973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14073" g_stop="14188" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14189" i_stop="15305" i_length="1117">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15306" g_stop="15673" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="484" r_length="368" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0003D15.1" gen_strand="+" ref_id="SGN-U572165" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0003D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14073" e_stop="14188"/>
          <exon e_start="15306" e_stop="15673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAGTTTGATCCATATTTGGAAAAACAAGCTTTGGAAGCCCTCAACTCTTCACTTGAAGCATATACTAATAATCCTGAGGAAATAACTAATGCATTCAACAAAGAAGTTGGAAAGTAAGTGGTTTCTTGATTATTTTTTACTTTTTATGTTGCTCAGACTCTTCAAACATACCATTGGGATATGTGTGTTGGATCTATATATCCTCCAAAATTTATTGCATTTTTAAGGATTTGATAATATTTTATGGACGGTCCGCGACAAAGAATGCAGACCTAGCAAAGAGGCATAATACATAAATATATCATTTAACTTGGCTTCAAATCACATTATGCCCTTCAACTTTGGGTCTGCACAATTAGATAATTAAACTTGTATAAAATTGAACAAAATAGACACACATATCCTATATGACATCCTACATGTCATTTTTTGTCCTACGTGGTGTCCTATGTGTATTATGCCACGTAGGACTCATCTGTCTATTTGTTCAACTTCATACAAGTTTAAGTGTCTACTTGTACATATTCAAAGTTGGAGAACATAAACGTAAAATGAAGCCAAATTAAAGGGCATATTTATGTATAATGCCCTAGCGAAAAATAGGGTTTAATGGATGAAAGATATATATAGCCGAACTCCATCCGTTCTAAAATATGTTAAATGTTTGAATCTGCATGAAATTTAAGGGAAAAAAAATGAAGATTTCATGTTATATATGTTTGGTGATAAAACTTATGACATTAAGCATGTCATAACATTTACCTATGGTTATAAAAACTTCTCATTAAGGGTCAATTGGAAAGTCTTAAGTTCAATTTTTTTCAAATTTATAAGAGTTGTGATTTTCGAAACAGACTTAAAAGAAAAATGTGTCAGAGTGAAACATAGGGAATATCATTAGTTGAGATTAAGTTTTTGTTACGTTAGCATGTTTATTTAGGTCCAATATTTGCTACAAGAATTTTTTAGACTCGTTCGAGATATATATGCCAGAAGAAATATTTTTTTGTTTCGTAATATTGGATAGCAGCAAGCTTAAATAGAGCGACATGGGCAATGACATTTCATTATATTTATAGCCGACCTAACTTATTTGTTCACTCGTTTGGGATTGAGGCTAACTTATTTGTTCACTCGTTTGGGTTTGAGGCGTAGTTGTAGCTGTTTCTTTGATTTTACTTGCATAGGTTTAGGAAAAATGACATGAATTTTACTTAATGTATTATGCAGTGCATTGCTGAAGTATAAAAGCTTAAGGAGGCATCTTAAAGAAAAAGATAAATGCATGGCAACCAATCCAATTGATAGATGCTGGAGGTGTGACAAAAATTGGGCTGAAAACAGGATGGATTTGGAAGAGTGTGCTAGGGGATTTGGCCACAAGACGACCGGTGGTAAAAATGGCAAGTACTATGTTGTCACCGATGAATCAGATGATAACGTGCAGGAACCAAAACCAGGGACCCTTCGTCATGCTGTGATTCAAGAGGAGCCATTGTGGATCATCTTTGAGAAATCAATGGTGATCAAGTTGCGACAAGAACTTATGATCACGAGTGACAAGACAATCGATGGCAGGGGAGTCGCTGTTCACATAG</genome_strand>
        <mrna_strand>GCTGAGTTTGATCCATATTTGGAAAAACAAGCTTTGGAAGCCCTCAACTCTTCACTTGAAGCATATACTAATAATCCTGAGGAAATAACTAATGCATTCAACAAAGAAGTTGGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTGCTGAAGTATAAAAGCTTAAGGAGGCATCTTAAAGAAAAAGATAAATGCATGGCAACCAATCCAATTGATAGATGCTGGAGGTGTGACAAAAATTGGGCTGAAAACAGGATGGATTTGGAAGAGTGTGCTAGAGGATTTGGCCACAAGACGACCGGTGGTAAAAATGGCAAGTACTATGTTGTCACTGATGAATCAGATGATGACGTGCAGGAACCAAAACCAGGGACCCTTCGTCATGCTGTGATTCAAGAGGAGCCATTGTGGATCATCTTTGAGAAATCAATGGTGATCAAGTTGCAACAAGAACTTATGATCACGAGTGACAAGACAATCGATGGCAGGGGAGTCGCTGTTCACATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597209" ref_strand="+" ref_description="SGN-U597209 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>caataaaaatatcactcttgtaaacatacagattacactgaatacaaacagagaactcaaatttctagaaatcaatgtaattacatcttctttttcttttcacgggaatcgattcatacttccacaatacctacacttactctatcacaaggaaagaaaactaaaactaaaacttaaacaaaacataacttatgggaaccatttctttcttatcctattttccattcttctacagtcaaaatatcttcaatctacttatctcctttttactgatgcatcaaattatatgcacataagaggatcgttagctaacaaggtctgccaggtttgcacttgagcacaccagcaaagcgagtgagtcgtcctgcatgtgaaccaggcttgaacttgatcttatgattttttgtcaatgcatgttttttcttgtcttgtggccctgactccacaaaataagctccattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0003D15.1" temp_strand="-" temp_description="C01HBa0003D15.1  AC193776.1 htgs_phase:3 submitted_to_sgn_as:100406.C143 sequenced_by:cornell upload_account_name:us 100406.assem.ace.1 (whole contig)">
        <position start="18129" stop="17081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17833" g_stop="17381" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0003D15.1" gen_strand="-" ref_id="SGN-U597209" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0003D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17833" e_stop="17381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAAAAAAATATCACTCTTGTGAACATACAGACTACACTGAATACCAACAGAGAACTCAAATTCCTAGAAATCAATGTAATTACATCTTCTTTTTCTTTTCACGAGAATTGATTCATACTTCCACAATACCTACACTTACTCTGTCACAAGGAAAG------------AAAACTGAAACAAAACATAACTTATGGGAACCATTTCTTTCTTATCCTATTTTCCATTATTCTACAGTCAAAGTATCATCAATCTACTTATCTCCTTCTTACTGATGCATCAAATTATATGCACATAAGAGGATCGTTAGCTAACAAGGTATGCCAGGTTTGCACTTGAGCACACCAGCAAAGCGAGTGAGTCGTCCTGCATGTGAACCAGGTTTGAACTTGATCTTATGATTTTTTGTCAATGCAGTTTTTTTCTTGTCTTGTGGCCCTGACTCTACAAAATAAGCTCCATTTA</genome_strand>
        <mrna_strand>CAATA-AAAA-TATCACTCTTGTAAACATACAGATTACACTGAATACAAACAGAGAACTCAAATTTCTAGAAATCAATGTAATTACATCTTCTTTTTCTTTTCACGGGAATCGATTCATACTTCCACAATACCTACACTTACTCTATCACAAGGAAAGAAAACTAAAACTAAAACTTAAACAAAACATAACTTATGGGAACCATTTCTTTCTTATCCTATTTTCCATTCTTCTACAGTCAAAATATCTTCAATCTACTTATCTCCTTTTTACTGATGCATCAAATTATATGCACATAAGAGGATCGTTAGCTAACAAGGTCTGCCAGGTTTGCACTTGAGCACACCAGCAAAGCGAGTGAGTCGTCCTGCATGTGAACCAGGCTTGAACTTGATCTTATGATTTTTTGTCAATGCATGTTTTTTCTTGTCTTGTGGCCCTGACTCCACAAAATAAGCTCCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567319" ref_strand="+" ref_description="SGN-U567319 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157345615|emb|CAO14913.1| (e_value=2e-95) unnamed; (*ATH) AT1G28110.2 (e_value=1e-63) | Symbol: None | serine carboxypeptidase S10 family protein, similar to H.vulgare gene encoding serine carboxypeptidase II, CP-MII GI:1731989 | chr1:9803628-9806883 REVERSE | Aliases: None; (*SWP) sp|Q93Y09|SCP45_ARATH (e_value=9e-63) Serine carboxypeptidase-like 45 OS=Arabidopsis thaliana GN=SCPL45; ">
      <seq>cgaatggttccatggttgtgcatctttttttcttactggttgatctacaaatcaagtcgtgagcttataacttctcttcctggacaacctccaaatatattcttcaaacaacactctggttatattgttacaaattctcaaaatggtagagctctcttttattattttgtagaaccggattcagaaaatgcaacatcacttccccttactctgtggctcaatggaggccctggttgttcatctgtggggttcggtgtttgtatggaacatggtccatttcagccaggaaaagatgggagactaataaaaaacaagtattcttggaatttagaatcgaacatgctatacgttgagtccccgattggagtaggattttcatactcgaatacaagctcggactacgtcaattgcgatgatgttgcaacagcaaaggagaatctccaatttctactcaactggttagagaaattccccgaatataggaacttggatttgttcttagctggtgaaagttatgcaggtcactatattccacagcttacagtattgctgcttgattacaatagaaagcctaatgttaaaccaatcaagcttaaatcaattgcactggggaatccactactagatcttgaaataagcgttaagtcttccgaatatttatggtcacatggtgcgatttctgatgaattacttactatgaaaagaacaatctgtaacgaaaacgagttgttgttgggatcaatacatcataatatgtctaacgagtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0003D15.1" temp_strand="+" temp_description="C01HBa0003D15.1  AC193776.1 htgs_phase:3 submitted_to_sgn_as:100406.C143 sequenced_by:cornell upload_account_name:us 100406.assem.ace.1 (whole contig)">
        <position start="49333" stop="51782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49631" g_stop="49856" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49857" i_stop="50026" i_length="170">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50027" g_stop="50131" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="331" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50132" i_stop="50649" i_length="518">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50650" g_stop="50745" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="427" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50746" i_stop="50835" i_length="90">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50836" g_stop="50928" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="520" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50929" i_stop="51150" i_length="222">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51151" g_stop="51236" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="606" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51237" i_stop="51318" i_length="82">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51319" g_stop="51482" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="770" r_length="164" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0003D15.1" gen_strand="+" ref_id="SGN-U567319" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0003D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49631" e_stop="49856"/>
          <exon e_start="50027" e_stop="50131"/>
          <exon e_start="50650" e_stop="50745"/>
          <exon e_start="50836" e_stop="50928"/>
          <exon e_start="51151" e_stop="51236"/>
          <exon e_start="51319" e_stop="51482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGTTCCATGGTTGTGTATCTTTTTTTCTTACTTGTTGTTCTACAAATCAAGTTGTGAGCTTATAACTTCTCTTCCTGGACAACCTCCAAATATATTCTTCAAACAACACTCTGGTTATATTGTTACAAATTCTCAAAATGGTAGAGCTCTCTTTTATTATTTTGTAGAAGCGGATTCAGAAAATGCAACATCACTTCCCCTTACTCTGTGGCTCAATGGAGGTACATTTCTCCTATATTGCTCAGACTCTTCAAAAATATCGACATGTGTGTGTCAGATCGGACACATATACAATAACATTTTTCGAGAGTCCGAGCTATATAATATTGTATACCGCTTCTCTATTGACCTTTTTTTTTTCATTTGATATTGATTGAATCCATTATGTTAGGCCCTGGTTGTTCATCTGTGGGGTTTGGTGTTTTTATGGAACATGGTCCTTTTCAGCCAGGAAAAGATGGGAGACTAATAAAAAACAAGTATTCTTGGAATTTAGGTAATGTTTCTTTCTTCTTTAGGGTAGAATATTTAGTAGGTAGTTGAGCGTTGTCTCATTTCCTAGCATGATAGATTGGTGTATTGTATCTGTTTCTCGATTCTTTTTTTTTACCAGTAGTAGTAGCGTTTGTCTCATAGTTGGTCTATATTACGAGTTTTGTTACACCTCGTCATTTACTTACTGTGCTTCAGTTATCACATTAGTTGGTTATGTTGCCCCTCTTTGGTATGTTAGGTTATGATTTCCTTATCATATTCTATGTCCTCTTTACTTCTGTATTGTTCTATTAGCTGCTCTGATGTTCGTTATTTGAGCTGAGGGTCTTCCGGAAACAACCTCTCTACCTTCTTGAGGTAGTGGTAAGGTCTACGTACACTCTACCCTTCCCAGACGCCGCTTTTGGGACTATACTGGGATTGTTGTTGTTGTTATCCTGAATGATCATGTTGAAAAGATTTCATTGCCTTGAAAATCGGATAACAATGACTGATTTCGATTGCTATAACACGAAACAGAATCGAACATGTTATACGTTGAGTCCCCGATTGGAGTAGGATTTTCATACTCGAATACAAGCTCGGACTACGTCAATTGGGATGATGTTGCAACAGGTACACCACTTTTCCAGAAATAGCTAATAATATTTGGTACTAAAAGGCAACGGAAATGTCTGATTTTGCACCTTTTGATCTTTTATATAGCAAAGGAGAATCTCCAATTTCTACTCAACTGGTTAGAGAAATTCCCCGAATATAGGAACTTGGATTTGTTCTTAGCTGGTGAAAGTTATGCAGGTAATATATCTGAACTTTTATGTTGCTGAGACTCTCCAAAAACTTGTCACACCCGTGTCAGATTCCTCCAAAAGTAGTACATAGAGAATCCATTTGGAGGATCCGACACACAATGTTGACATTTTTGAAGAGTACGAACAACAGAAGACTTAACTCGCCTATGTTTTTTGTTCTTTCGGTTGTAAAGATTCGTCAACTGTTCTGTTTTTGTTTTTTTTTTAGGTCACTATATTCCACAGCTTACAGTATTGCTGCTTGATTACAATAGAAAGCCTAATGTTAAACCAATCAAGCTTAAATCAATTGCAGTAATGTCTACATTACCCTTAAACTTCTTGTTGATTAATTGTTTTATATTCGAATCTGGGTTATATCCAATGACTTTTGCAGCTGGGGAATCCACTACTAGATCTTGAAATAAGCGTTAAGTCTTCCGAATATTTATGGTCACATGGTGCGATTTCTGATGAATTACTTACTATGAAAAGAACAATCTGTAACGAAACGAGGTTGTTGTTGGAATCAATACATCATAATATGTCTAACGAGTGCTC</genome_strand>
        <mrna_strand>CGAATGGTTCCATGGTTGTGCATCTTTTTTTCTTACTGGTTGATCTACAAATCAAGTCGTGAGCTTATAACTTCTCTTCCTGGACAACCTCCAAATATATTCTTCAAACAACACTCTGGTTATATTGTTACAAATTCTCAAAATGGTAGAGCTCTCTTTTATTATTTTGTAGAACCGGATTCAGAAAATGCAACATCACTTCCCCTTACTCTGTGGCTCAATGGAG..........................................................................................................................................................................GCCCTGGTTGTTCATCTGTGGGGTTCGGTGTTTGTATGGAACATGGTCCATTTCAGCCAGGAAAAGATGGGAGACTAATAAAAAACAAGTATTCTTGGAATTTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAACATGCTATACGTTGAGTCCCCGATTGGAGTAGGATTTTCATACTCGAATACAAGCTCGGACTACGTCAATTGCGATGATGTTGCAACAG..........................................................................................CAAAGGAGAATCTCCAATTTCTACTCAACTGGTTAGAGAAATTCCCCGAATATAGGAACTTGGATTTGTTCTTAGCTGGTGAAAGTTATGCAG..............................................................................................................................................................................................................................GTCACTATATTCCACAGCTTACAGTATTGCTGCTTGATTACAATAGAAAGCCTAATGTTAAACCAATCAAGCTTAAATCAATTGCA..................................................................................CTGGGGAATCCACTACTAGATCTTGAAATAAGCGTTAAGTCTTCCGAATATTTATGGTCACATGGTGCGATTTCTGATGAATTACTTACTATGAAAAGAACAATCTGTAACGAAAACGAGTTGTTGTTGGGATCAATACATCATAATATGTCTAACGAGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563869" ref_strand="-" ref_description="SGN-U563869 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157345616|emb|CAO14914.1| (e_value=2e-66) unnamed; (*ATH) AT5G42240.1 (e_value=4e-36) | Symbol: SCPL42 | serine carboxypeptidase S10 family protein, similar to Serine carboxypeptidase II-3 precursor (SP:P52711) (CP-MII.3. (Hordeum vulgare) | chr5:16905461-16908420 FORWARD | Aliases: K5J14.4, K5J14_4, SCPL42; (*SWP) sp|Q9FH05|SCP42_ARATH (e_value=4e-35) Serine carboxypeptidase-like 42 OS=Arabidopsis thaliana GN=SCPL42; ">
      <seq>gtgatacagatacaggcgatctgctcgcgccaatatgtgtatcttctggtgtagcaggacaattaggagtccttggaaaacttgcctcaatacatgaaaaggacgtgagagaaattggcgatccatgccttactgataggatatatatgtatcttaacaagccagaagttcaaaaggcattacatgccaacactactcacttgccatatgcctgggatttttgtttagggcaccttcagtatcaaagaggtgatttagctataaatgttatacctctattgtcaaatattctaaaagagaatatacaagttctgctttacagtggagaccaagatacaaaaatcccactgacccaaactaggaaaattgctaaactacttgctagagatttaaagctagttgctttagataaatatggtccctggtatgatggcttgcagattggaggatggagtcaatcatttggaggggttagagaaggcaaaaatgtaacatatttaacatttgctacgattaggggtgcggctcatgaagtgccttatacttctccttcacaagctcttactcttttcagaacatttctaaaaggacaatctccatcgcgaaagaataacaccattcgagccaagaagttgcatagctctatcgacctcttttcaactgcaatttagatgtttaatttgttatctttgttgtatacttttcttttttaaattgtgagtttgaaaaatttaaagctaaattactttatagaaatgtgtagttttcaactcgactaatgaagaaataatgtcatgtaaaataagattctcaaagagggtggtttgtcccaaatgtaactagccgaatgagtattaccaccaagcgttaatgtagtagtcctctacttagtgcggactgcaggacagttccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0003D15.1" temp_strand="+" temp_description="C01HBa0003D15.1  AC193776.1 htgs_phase:3 submitted_to_sgn_as:100406.C143 sequenced_by:cornell upload_account_name:us 100406.assem.ace.1 (whole contig)">
        <position start="51218" stop="55682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51518" g_stop="51618" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51619" i_stop="51691" i_length="73">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51692" g_stop="51819" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="229" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51820" i_stop="51949" i_length="130">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51950" g_stop="52042" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="322" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52043" i_stop="52736" i_length="694">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52737" g_stop="52854" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="440" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52855" i_stop="54906" i_length="2052">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54907" g_stop="55382" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="916" r_length="476" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0003D15.1" gen_strand="+" ref_id="SGN-U563869" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>916</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0003D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563869" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51518" e_stop="51618"/>
          <exon e_start="51692" e_stop="51819"/>
          <exon e_start="51950" e_stop="52042"/>
          <exon e_start="52737" e_stop="52854"/>
          <exon e_start="54907" e_stop="55382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATACAGATACAGGCGATCTGCTCGCGCCAATATGTGTATCTTCTGGTGTAGCAGGACAATTAGGAGTCCTTGGAAAACTTGCCTCAATACATGAAAAGGTGTAAATTTGAATCTTTTCTCTTAACTTTCTTTGCAGTTAACACTAACTCAATGCAGTTGTTCTTTTGACAGGACGTGAGAGAAATTGGCGATCCATGCCTTACTGATAGGATATATATGTATCTTAACAAGCCAGAAGTTCAAAAGGCATTACATGCCAACACTACTCACTTGCCATATGCCTGGGATTTTTGTTTAGGGTCAGTTCTTTCTAAATTTTACTTTCTTTCGTGTTTTGAAAGCATTTGTATCTCCTTATTCAAAAGCTTAAACTGTTAGACAGACATACGTTTAAACAAGTCTGTATGTTAATATGTCAAAAAATTGCAGGCACCTTCAGTATCAAAGAGGTGATTTAGCTATAAATGTTATACCTCTATTGTCAAATATTCTAAAAGAGAATATACAAGTTCTGCTTTACAGGTTAGTTCATTTCTACATTTGAAGTTACAATAATCAAATTTCCTCTAATTATCACTATTGTAAACAGACATAATACATAAATAAACATTCAAATTTGGCATCACATGGCAAGTATTAAATATTCCAATTGAGTATGCACCTAAATCCGTCTCCACTCTGTCAAGTGAACACTCCAACATAGAAAATGATCATCTAGAAACTCCAGTATCACGTTAGAATCGGAGGTCTACGAGATACTGTAAGGTAATTAGTTTGATTGTTTAATTGTCAATTGAGACAAGTCAAGGTATCTACATGTGCACTCTCAAAGTTAGAGTGCTTACTTGTCGGCTGAGAACAAGTTTTAGTGTGTTCATGCATTATGCATTGTAAAAGGGGAAAAGGAACAAAAATATCGGGAGTTATTTGAAATAGGTCAACTTTACCCCGTTATGTTTTTTGGCAAAAAATTGCCCTCGTTGTTCGTCAACTAGCTCAAAATGGCCCCCCAATTAGTTGGGTAACGGAAATGACATTTTTTTTCAAAACATAATGGAGGTTAAAATTAACATATTTTAAATAGTTCAGAGGTATTTTTGATCATTTTCCCTTGAAAAAACTATATATTTACTCTTGGTGCTTTATTAAACTTTGTTATAGCTGTTACTCTGTAATAAGATTGTGTATGTTTTTTTGTGTTTTTTTTTTTTGCCAGTGGAGACCAAGATACAAAAATCCCACTGACCCAAACTAGGAAAATTGCTAAACTACTTGCTAGAGATTTAAAGCTAGTTGCTTTAGATAAATATGGTCCCTGGTATGATGGCTTGCAGGTATGTGACTACATCCATTGTTTTCAATTTTGGACCATATGTTTTAAAATAATTTTAAAATCATATGTTTATAACAAAGAAGAAAGGCACTCAAACTTGTGTAAAATTACACAGTAGACACAAAAGTCCTTGTAGTATAATACATGTAGGACACCATTTAGGAAACAAACTTATAACAAAACAATTTTTAGCGGCATTAAATATTGACATTCATAAAGAGTGCTAAAGTCTTTACCGGCATTAGTTAAGTGTCATTAGAATCAATGTCGCTAAAGGCTTTAGGAACATATACAAAGAGTGTCAATTGCCGCTAAAAATACATATTTAGCGGTAATTAAAAATTAATTGCCACTAATGATCATATTTGTTGTAGTAAAATTGACATGTGAGATGCTATGTATGACGTGTGTCTATTTGTACAATTTTATACAAGTTTAAGTGGTTATTTTGTACATACCCAAAATTGAAGGACATGAATATGAAATAAGACCAGAGTTGAAATGTATATATTTATGTATTATGCCTAAAATCTATCATTCCTTCTAATACCTACTGAAATGATGATATATATTGTAATTTCAAAGAGGCTCAATCGGACATAAGGACCTGAATGAAGACATGCTTCACTATGATATGTCGTGCAAATTCTAGTTAATGACTTTGAAACAAATAAATCACTAATTTATGCTATTGATCTTGTCTTAGCCTTACATAACAATGAAACTTTTTAATACTTTAGAAAATATAGTCCTAAAGTGGTGTTAAGCTTAGAACAATCCGAGGATATTTGAATATAAGGAAAGAAAGACATTTCCATCTAGAATATATAAAAAGAAAAATCCAATTTCCTTTTTTTGGATAAAACTTTAATTAAGAACTGATTCTAGGTGGTCCATTTGATAAGTTTAAACTTTTTTTTGCTTTTAATTTCATAGTAATAAGTAATAACTACTCCCTCTTGTTCTTTACAAGGACCTTTCTAGTCCTTTAAAGTAGTTCAAAATAAGTGTCATTTATAAAAGAGAAAAGGGTCTGATATACCCCTCAATTTTGTTATTTGGAGCTGATATACCTCTCGTTATAAAAGTGACTCATATATGCCCTTACCGTTATACAAACGGCTCACATATACCCCTGCCGTTACAAAATGGCTCACATATACCCTTCATTTAACAAATTTAAAAAAATTAGTTTTAAATTTATATTTATTACTTCTAATTTTTTTTAAAAAATTATTTAGGGGTATATATGATTCTTCTATCAAAGTTCAAGGTATATTTTAACTTTTTTCATACATAAATTATTTTTTGACTTCTTTTATTATAATTATTTGAATTTCTTATTCTTATTTTGTTTTTTCTTTCATTCCTTAGTTTAAAGAATAAAAAATTAAACTATTTTTTTTGTGTGTATTGTAATTTAATTTCGTTTTCGAAGAAAAAATTTGATCATCTACAATAAGTTTTACAAGAATATTAGTGAAACATAAATAAATTTGATTATCAAAATAATAATTATAAATTAGTCATTGAAACAAAAAAAAGTAAAAAAAAATATGTTTGATGAGGATTAAATTTACTCATATGGGATTATATTTTTTAGAAAAAAATAATAAAAATTTAGATTAAAATTATTATTATTTTCATTTCCGTTAGAGAAAAGGGTATATGGGAGTCATTTGTTTACAAGTAGGGGTATATATGAGCCACTTTTATAACAAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGGCTATATCAGACCCTTTTCCCTTTATAAAAAAAACAAACATATTTCTTGTTTTCCCAACTTATCCTTGATATAATAAATAAAGCGAACGATTTTTTAAAAAGGTCTTTCAACTATAAAGGAAAGATAAAGGACAATGTAGTCAAAATGACCCTTTAATTTTATTAAGGGAATCAATTTGATTTCTTAATAGACGTGTCATCATAAAAAAATACTTTAAAATGATGGAAAGGAGTAATAAGGTAAGCATTCAACTCGCGATACGGAATTACTACTTTGTAATTTGTTGATTAATTTGCAGATTGGAGGATGGAGTCAATCATTTGGAGGGGTTAGAGAAGGCAAAAATGTAACATATTTAACATTTGCTACGATTAGGGGTGCGGCTCATGAAGTGCCTTATACTTCTCCTTCACAAGCTCTTACTCTTTTCAGAACATTTCTAAAAGGACAATCTCCATCGCGAAAGAATAACACCATTCGAGCCAAGAAGTTGCATAGCTCTATCGACCTCTTTTCAACTGCAATTTAGATGTTTAATTTGTTATCTTTGTTGTATACTTTTCTTTTTTAAATTGTGAGTTTGAAAAATTTAAAGCTAAATTACTTTATAGAAATGTGTAGTTTTCAACTCGACTAATGAAGAAATAATGTCATGTAAAATAAGATTCTCAAAGAGGGTGGTTTGTCACAAATGTAACTAGACGAATGAGTATTACCACCAAGCGTTAATGTAGTAGTCCTCTACTTAGTGCGGACTGCAGGACAGTTCCATTT</genome_strand>
        <mrna_strand>GTGATACAGATACAGGCGATCTGCTCGCGCCAATATGTGTATCTTCTGGTGTAGCAGGACAATTAGGAGTCCTTGGAAAACTTGCCTCAATACATGAAAAG.........................................................................GACGTGAGAGAAATTGGCGATCCATGCCTTACTGATAGGATATATATGTATCTTAACAAGCCAGAAGTTCAAAAGGCATTACATGCCAACACTACTCACTTGCCATATGCCTGGGATTTTTGTTTAGG..................................................................................................................................GCACCTTCAGTATCAAAGAGGTGATTTAGCTATAAATGTTATACCTCTATTGTCAAATATTCTAAAAGAGAATATACAAGTTCTGCTTTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGACCAAGATACAAAAATCCCACTGACCCAAACTAGGAAAATTGCTAAACTACTTGCTAGAGATTTAAAGCTAGTTGCTTTAGATAAATATGGTCCCTGGTATGATGGCTTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGATGGAGTCAATCATTTGGAGGGGTTAGAGAAGGCAAAAATGTAACATATTTAACATTTGCTACGATTAGGGGTGCGGCTCATGAAGTGCCTTATACTTCTCCTTCACAAGCTCTTACTCTTTTCAGAACATTTCTAAAAGGACAATCTCCATCGCGAAAGAATAACACCATTCGAGCCAAGAAGTTGCATAGCTCTATCGACCTCTTTTCAACTGCAATTTAGATGTTTAATTTGTTATCTTTGTTGTATACTTTTCTTTTTTAAATTGTGAGTTTGAAAAATTTAAAGCTAAATTACTTTATAGAAATGTGTAGTTTTCAACTCGACTAATGAAGAAATAATGTCATGTAAAATAAGATTCTCAAAGAGGGTGGTTTGTCCCAAATGTAACTAGCCGAATGAGTATTACCACCAAGCGTTAATGTAGTAGTCCTCTACTTAGTGCGGACTGCAGGACAGTTCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591120" ref_strand="+" ref_description="SGN-U591120 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0003D15.1" temp_strand="-" temp_description="C01HBa0003D15.1  AC193776.1 htgs_phase:3 submitted_to_sgn_as:100406.C143 sequenced_by:cornell upload_account_name:us 100406.assem.ace.1 (whole contig)">
        <position start="54616" stop="53562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54316" g_stop="53872" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0003D15.1" gen_strand="-" ref_id="SGN-U591120" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0003D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54316" e_stop="53872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTGTAGATGATCAAATTTTTTCTTCGAAAACGAAATTAAATTACAATACACACAAAAAAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAG-AAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAGTTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATA-ATTTTTT-AAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTTAAATTTGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGTCACTTTTATAACGAGAGGTATATCAGCTCCAAATAACAAAATTGAGGGGTATATCAGACCCTTTTCTCTTTT</genome_strand>
        <mrna_strand>CTTATTGTAGATGA-CCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTT-TTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATGAAAAAA-TTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567667" ref_strand="+" ref_description="SGN-U567667 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157350933|emb|CAO41048.1| (e_value=2e-137) unnamed; (*ATH) AT1G69800.1 (e_value=3e-131)  Symbol: None | CBS domain-containing protein, low similarity to SP:Q9UGI9 5'-AMP-activated protein kinase, gamma-3 subunit (AMPK gamma-3 chain) (AMPK gamma3) {Homo sapiens}; contains Pfam profile PF00571: CBS domain | chr1:26277893-26279992 REVERSE ... ; (*SWP) sp|Q8LBB2|KING1_ARATH (e_value=1e-46) SNF1-related protein kinase regulatory subunit gamma 1 OS=Arabidopsis thaliana GN=KING1; ">
      <seq>taacaaaagatttacacccaaattacacatctcactctctatcaagcacaaaaattaaaacctctgcacagcagcctcacaggaatatattcttagagccaggtccccttctctgtgtatattgaagtaaatggcacaagcaaaaattacggaaaatacgtcgaaacttgcaagttatgatgcttattttgaaaaggcccagaaaagaaagaaattgccccgtaatttgcaggaaactttgactgatgcatttgcaaatattccagtttcatccttccctcaagtccctggaggaaaagtaattgaaatagacgccgagacttctataggcgatgctgtcaaaattctttcagaatcgaacatcctctcagttcctgtgaagaatccagtggctaagaatagtttggattggagagaaaggtacttaggtgtccttgattactccgctattgttctttgggtgctggagggtgcggaaacagcagcagctgccatatcagcaagttcggcagcagcagccggagttggagcaggtaccgctggtgctcttggagcactggcattaggtgcaacaggtcctgctgcagttgctggtctaacggttgctgcagtcggtgcagctgtggcaggtggagtggctgcagatcgaggagcgggaaaggatgctccaactgcggccaataacttgggtgaggatttctacaaggttatccttcaagaagaaccctttaagtcaacaaaggtgagctccatcataaaatcctatcgatgggcaccatttgttccagtagcaatggacagttctatgttgagtgtgttgctgctgttatcaaaatataggctgcggaatgtacctgtgatagaaagaggaagtccataccttaagaactttataactcaatcagccgtggtacggggtcttgtaggatgcaaagggagggattggtttgactgcatctccgctcaccctatatcagaacttggcctcccatacatgtccgctgacgaggttattagtgtccgagacgatgaactgattctggaagcattcaagaaaatgagagataataatatcggaggtctgccggttgttgaaggatcaaagaagaagatagttggcaatgtaagcataagagacatcagattcttgttactcaaacctgaactattctccaatttcaggcagctgacagttgcgggtttcatgaacacagttgcttcggcaacccatgatgccacaaaggcagctacgccaataacatgcaagctcggttcaactctttgtactgtgatagacactctcgcgtccaagttagttcacaggatctatgtgacagctgaggatggcgatgaaattgtgggtgtgatcacactcagagatgtcatttcctgcttcatctatgaaccatcgaacttcttcgataactattttggattttctgcacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0003D15.1" temp_strand="+" temp_description="C01HBa0003D15.1  AC193776.1 htgs_phase:3 submitted_to_sgn_as:100406.C143 sequenced_by:cornell upload_account_name:us 100406.assem.ace.1 (whole contig)">
        <position start="64514" stop="69405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64814" g_stop="64895" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64896" i_stop="66916" i_length="2021">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66917" g_stop="67133" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="299" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67134" i_stop="67218" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.423" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67219" g_stop="67661" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="742" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67662" i_stop="67873" i_length="212">
            <donor d_prob="0.067" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67874" g_stop="68140" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="1009" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68141" i_stop="68236" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68237" g_stop="68409" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1010" r_stop="1182" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68410" i_stop="68839" i_length="430">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68840" g_stop="69105" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1183" r_stop="1448" r_length="266" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0003D15.1" gen_strand="+" ref_id="SGN-U567667" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0003D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64814" e_stop="64895"/>
          <exon e_start="66917" e_stop="67133"/>
          <exon e_start="67219" e_stop="67661"/>
          <exon e_start="67874" e_stop="68140"/>
          <exon e_start="68237" e_stop="68409"/>
          <exon e_start="68840" e_stop="69105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAAAGATTTACACCCAAATTACACATCTCACTCTCTATCAAGCACAAAAATTAAAACCTCTGCACAGCAGCCTCACAGGTACCTATATATATACATATATTTTTTTTCTTCAATTTTACACTATCTATTATCATTATTATTATTACTATATCTTATTAGTGTGTGGGTTTAGCAATTGATTAGAATGTTCATAATTAGGTAATTGAATGTGAAAAGAGATCTTTTTTAAAAAAAATTTGATTAGGTTTGGTTTTGGTCCAATATTTTGAGAAATTGATATACGGAATTGAATACTCTTGATTGGGAAGTAGAAAAGGTGATAAATACTCTTAAATGTTTTGAGCTGTTTTGGGGAAAACTAATATCACACTGAGGGAGGAGTTTACAGGCTAAAAAGGGGCACGTAAAATTAGATATTTTATGTAAATATTTTTTGTATTGACACCTATCCGAAGGCTAAATAGTGCAATTGGTTGGATTGTTTAGTTATTTACTTGTGTTTAGTTCTCACTTAATACATGTTTTTTTTTTTAAGTGTATCCATGTTGTACAAATTCTAGCTTCGCCTATGATTACATTATGTTTGGACAGCATCACACCATCTTTTTGGACTGTTTTAGCCCAATATTATACTACCTGGTTATAATTATTTTTCATGAAAGCATGTATATTAGATGTCGAATTCTTTGTGCTAGTTCGTGTGTTCAAGTTTTCAAATTTTGAACCTCTTCGACATATGTTCTTCCCCTATGGCTTTTTGCAAGGACAGTCCAATAAAATTCTTCTCTAGTGTAACTCTCACTTACTCATTGTGGTTGCGTTTAGCGCGGCTTTCAAATCTATACATAGCTAATTAAGCAAGTAATGTGTTGATCAACGTACTCTGATTAAACTCTGCATAAATTGTTGCAACTGTCCTATTTATGATTTTGTTCCGACTTTTGCTGGGGGGAGGAGCTTCTCAGGAACAGAGTTTCTGATACCCTATTCACAATATAAACATAATTACAGAGTTATTATGATGCTTATTTTTGAGATGGTACTGAGCAGAAAGAGATTTTATTGTTACCATTAGTTTCAATCTTTCATTATTATTCTTAAGTGGAAATACAAAGTTACAGACATTTGTAATAAGAACTAATGAGTCACTGAATCCTTCAATCGAGTGTAGGCATAAGTTTGTAGCAATGATGTTTTCCTATCAATTCTTGTCATAGAAAGTTACTCGACTTTCATTTTCAATTCAAAAAGTCACTTAACTATGACTTCTTTGCACAGAAAGTCACTCAAATTATTTATTGTTTAAAATTTGCTGACATGAAATTTTAATTATTAACTAAAAATTTAAGAACCAAATATATATCCATTTAAACCATTTAATGACCCACCCGATTTACCCGGAGCCACTGAAATATAATACTGAACTTTTTATTTTGCCATTAATTCCCTGATGATTCTCCCTTTGTCTCCCCATCCTTTCCCTTTACGTTCTTCTCTTGTTTTTTTTTTCTTTCTAAATTTGTCAATTTAGTGGTTATTGAATACATGCACATTATCACAAATTTTGCATTGGGGCACATTTAATAGTCGAGGTTTGCTAGTGACACACCAACTGGATATAGAAATGTTTTATTCAAACTCCGTTCTCGCAAGTCCCACCATATCCCATTCGCTTTCAAATTTCTTAGATTTTTTTTCAAATCCCCTATTTTTCTCATACTCAATTTACTACTACAACTGCTACTGCGAATTTTTCATAGAACAGAAAAGCACAAAATGAAAGGTTAAATGAGGCAAGTAATTAAATGGTTTAAATGGATATATATTTAGTTCTTAAATTTTTGGTTAATAATTAAAATTCTATGTCAGCAAATTTAAAGAAAAAAATAATAAAATAGCTTGAGTGATTTTTTGTGCAAAGAAGTCATAGTTAAGTGACTTTTGAGTTTAAAATGAAAGTTGAGTGACTTTCTATGAAAAGAATTGATAGTTGAGTGACCATCAAAGTTATTAACTCAATTTGATGGTCAGAGATTCTACCGACTATCACTATCTTCTTTAAAGTTTATGGATCTGATTGTTGTCATGGTGCTTCTCAGGAATATATTCTTAGAGCCAGGTCCCCTTCTCTGTGTATATTGAAGTAAATGGCACAAGCAAAAATTACGGAAAATACGTCGAAACTTGCAAGTTATGATGCTTATTTTGAAAAGGCCCAGAAAAGAAAGAAATTGCCCCGTAATTTGCAGGAAACTTTGACTGATGCATTTGCAAATATTCCATTTTCATCCTTCCCTCAAGTCCCTGGAGGAAAAGGTATATAAAATATACAAGTTTTCTCGTGATTATGTTTTTGATATCCAATGTTGTATCCTAAACGGCTACGTATACCTCATTCCAGTAATTGAAATAGACGCCGAGACTTCTATAGGCGATGCTGTCAAAATTCTTTCAGAATCGAACATCCTCTCAGTTCCTGTGAAGAATCCAGTGGCTAAGAATAGTTTGGATTGGAGAGAAAGGTACTTAGGTGTCCTTGATTACTCCGCTATTGTTCTTTGGGTGCTGGAGGGTGCGGAAACAGCAGCAGCTGCCATATCAGCAAGTTCGGCAGCAGCAGCCGGAGTTGGAGCAGGTACCGCTGGTGCTCTTGGAGCACTGGCATTAGGTGCAACAGGTCCTGCTGCAGTTGCTGGTCTAACGGTTGCTGCAGTCGGTGCAGCTGTGGCAGGTGGAGTGGCTGCAGATCGAGGAGCGGGAAAGGATGCTCCAACTGCGGCCAATAACTTGGGTGAGGATTTCTACAAGGTTATCCTTCAAGAAGAACCCTTTAAGTCAACAAAGGTGGGCATGCCTTCTAAAGGATTGAATTGATTGATTAAGAGAGACTTTACCCTTCTTATTTAGGGTGCTTATGTCTAAATTATTTGCAGCTGCTTCGCGTCTTTAGTACTCTTTAACATGAAAAATAATGATCATATCAAAGCGCTATTACAGATATATTCAGAGAATTTGACATGAATACACATGACAAGGTCAAGTAATTACATTCGCAGGTGAGCTCCATCATAAAATCCTATCGATGGGCACCATTTGTTCCAGTAGCAATGGACAGTTCTATGTTGAGTGTGTTGCTGCTGTTATCAAAATATAGGCTGCGGAATGTACCTGTGATAGAAAGAGGAAGTCCATACCTTAAGAACTTTATAACTCAATCAGCCGTGGTACGGGGTCTTGTAGGATGCAAAGGGAGGGATTGGTTTGACTGCATCTCCGCTCACCCTATATCAGAACTTGGCCTCCCATACATGTCCGCTGACGAGGTCTGTCATTTGTTACATCTGAATACTATGTATTTTTTAATTTTAATAATACAAAAGTTGGTGACTGGAAGTCTTGTCTTTCAATGTGTATGCCAGGTTATTAGTGTCCGAGACGATGAACTGATTCTGGAAGCATTCAAGAAAATGAGAGATAATAATATCGGAGGTCTGCCGGTTGTTGAAGGATCAAAGAAGAAGATAGTTGGCAATGTAAGCATAAGAGACATCAGATTCTTGTTACTCAAACCTGAACTATTCTCCAATTTCAGGTATGTGTTCATATAAATTGTTAGTTCTTTGCTGATAATGAGCTGCCGTATTAATTTTTTTAGTCGAATACCTTCCTCTATAATCTTTGGTCTCTCTCTCTTTTCGAGAGAAGATCTTCTATCCACTTGTCTATGAAGAACCTCAAGTCTATCGGGAAAGGATGTTGTGATAACCCCCTTTGTCTAGAACCACAGACGTCCAGCCGTGTCGGAAGACTCACCCTCGACCCCACCATTACTATTTGATTACTTCTACGATAAATAATAAGAGTTTCAATTCTTGGGAAACTTTCTTATGGTTGAAGTTGTGCAAGAAAATCGAACAATGATTAAATGGAAAAGCGATTCTGACTTTTATCATTAGGCTCAGAGATGTTCACCTCTTTTTTTTTTGTGTGTATGTACTAAATTTTGCTCGTTCGAATAACAGGCAGCTGACAGTTGCGGGTTTCATGAACACAGTTGCTTCGGCAACCCATGATGCCACAAAGGCAGCTACGCCAATAACATGCAAGCTCGGTTCAACTCTTTGTACTGTGATAGACACTCTCGCGTCCAAGTTAGTTCACAGGATCTATGTGACAGCTGAGGATGGCGATGAAGTTGTTGGTGTGATCACACTCAGAGATGTCATTTCCTGCTTCATCTATGAACCATCGAACTTCTTCGATAACTATTTTGGATTTTCTGCACAAG</genome_strand>
        <mrna_strand>TAACAAAAGATTTACACCCAAATTACACATCTCACTCTCTATCAAGCACAAAAATTAAAACCTCTGCACAGCAGCCTCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATATTCTTAGAGCCAGGTCCCCTTCTCTGTGTATATTGAAGTAAATGGCACAAGCAAAAATTACGGAAAATACGTCGAAACTTGCAAGTTATGATGCTTATTTTGAAAAGGCCCAGAAAAGAAAGAAATTGCCCCGTAATTTGCAGGAAACTTTGACTGATGCATTTGCAAATATTCCAGTTTCATCCTTCCCTCAAGTCCCTGGAGGAAAAG.....................................................................................TAATTGAAATAGACGCCGAGACTTCTATAGGCGATGCTGTCAAAATTCTTTCAGAATCGAACATCCTCTCAGTTCCTGTGAAGAATCCAGTGGCTAAGAATAGTTTGGATTGGAGAGAAAGGTACTTAGGTGTCCTTGATTACTCCGCTATTGTTCTTTGGGTGCTGGAGGGTGCGGAAACAGCAGCAGCTGCCATATCAGCAAGTTCGGCAGCAGCAGCCGGAGTTGGAGCAGGTACCGCTGGTGCTCTTGGAGCACTGGCATTAGGTGCAACAGGTCCTGCTGCAGTTGCTGGTCTAACGGTTGCTGCAGTCGGTGCAGCTGTGGCAGGTGGAGTGGCTGCAGATCGAGGAGCGGGAAAGGATGCTCCAACTGCGGCCAATAACTTGGGTGAGGATTTCTACAAGGTTATCCTTCAAGAAGAACCCTTTAAGTCAACAAAG....................................................................................................................................................................................................................GTGAGCTCCATCATAAAATCCTATCGATGGGCACCATTTGTTCCAGTAGCAATGGACAGTTCTATGTTGAGTGTGTTGCTGCTGTTATCAAAATATAGGCTGCGGAATGTACCTGTGATAGAAAGAGGAAGTCCATACCTTAAGAACTTTATAACTCAATCAGCCGTGGTACGGGGTCTTGTAGGATGCAAAGGGAGGGATTGGTTTGACTGCATCTCCGCTCACCCTATATCAGAACTTGGCCTCCCATACATGTCCGCTGACGAG................................................................................................GTTATTAGTGTCCGAGACGATGAACTGATTCTGGAAGCATTCAAGAAAATGAGAGATAATAATATCGGAGGTCTGCCGGTTGTTGAAGGATCAAAGAAGAAGATAGTTGGCAATGTAAGCATAAGAGACATCAGATTCTTGTTACTCAAACCTGAACTATTCTCCAATTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGACAGTTGCGGGTTTCATGAACACAGTTGCTTCGGCAACCCATGATGCCACAAAGGCAGCTACGCCAATAACATGCAAGCTCGGTTCAACTCTTTGTACTGTGATAGACACTCTCGCGTCCAAGTTAGTTCACAGGATCTATGTGACAGCTGAGGATGGCGATGAAATTGTGGGTGTGATCACACTCAGAGATGTCATTTCCTGCTTCATCTATGAACCATCGAACTTCTTCGATAACTATTTTGGATTTTCTGCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589255" ref_strand="+" ref_description="SGN-U589255 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>caatcgttttcactaatcttcaaaagcaaaagtaaaacacgattacaccaaacgtaagaaagagttatgaatcttaccgttaagcaatagtcctctattgcttaacaagcctaagtagaaaacaatctacccactaagctatcccacctggacaacctagacttttaacacaacacaccaaatcctttatagattcaggaatggtttacagtttaagaacaagagaatatattcctaaacaactagacgaaaagctcaagatattgctgttgttcttggaataattctgcctttactttgtagagcctttgcaagagttcttgaaaagtttttatcaagttgcaaaaactgaagaaaagtgtttaggaaagtgccttttatatgggcaagtcactttcctaaacttctttgccattggttggaagggtcactttctgacgccatcgggaagtgtgcacctactttctgcaccatctccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C01HBa0003D15-wppwW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C01HBa0003D15.1" temp_strand="-" temp_description="C01HBa0003D15.1  AC193776.1 htgs_phase:3 submitted_to_sgn_as:100406.C143 sequenced_by:cornell upload_account_name:us 100406.assem.ace.1 (whole contig)">
        <position start="77123" stop="76041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76823" g_stop="76341" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C01HBa0003D15.1" gen_strand="-" ref_id="SGN-U589255" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C01HBa0003D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76823" e_stop="76341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCGTTTTCACTAATCTTCAAAAGCAAAAGTAAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCATTAAGCAATAGTCCTCTATTGCTTAACAAGCCTAAGTAGAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAGTTCCTTTATAGATTCAGGAATGGTTTACAATTTAAGAACAAGAGAATGTATTCCTAAACAACTAGACGAAAAGCTCCAGATATTGCTGTTGTTCTTGGAATAATTCTGTCTTTGCTTTGTAGTAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTAAACAAAAATGTTTAGGAAAGTTCCTTTTATATGAGCAAGGCACTTTCCTAAACTTCTTTGCCATTGGCTGAAAAGTCACACTTTTTGACGCCATCGGGAAGTGTGCACCTACTTTCTGTACCGTCTCCAGC</genome_strand>
        <mrna_strand>CAATCGTTTTCACTAATCTTCAAAAGCAAAAGTAAAACACGATTACACCAAACGTAAGAAAGAGTTATGAATCTTACCGTTAAGCAATAGTCCTCTATTGCTTAACAAGCCTAAGTAGAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAAATCCTTTATAGATTCAGGAATGGTTTACAGTTTAAGAACAAGAGAATATATTCCTAAACAACTAGACGAAAAGCTCAAGATATTGCTGTTGTTCTTGGAATAATTCTGCCTTTACTTTGTAG-AGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTGAAGAAAAGTGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTG-GAAGGGTCACTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGCACCATCTCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="7738" PGL_stop="8021"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7738" e_stop="7837"/>
            <exon e_start="7919" e_stop="8021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.980"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="7738" e_stop="7837" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7838" i_stop="7918" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="7919" e_stop="8021" e_length="103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7738" stop="7837"/>
              <exon start="7919" stop="8021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591080" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAACCACCTCCTCCTCAAGTTGGCCAGGTCTTTCATACTTCTCATGTAGGTGGACCACCACCAATGGAACCTAATTATGACCGGCCTCACTATCCTCC : ACCGCCAATGGAGGAGAACTATGGTGGATCTTACAATCGTCCACCGCCGAGATCCGATTACTATGACGCCCCACCACCACCACCTACTTCCGGGTATCCCTCC</gDNA_template>
            <first_frame> M  N  H  L  L  L  K  L  A  R  S  F  I  L  L  M  *  V  D  H  H  Q  W  N  L  I  M  T  G  L  T  I  L   : H  R  Q  W  R  R  T  M  V  D  L  T  I  V  H  R  R  D  P  I  T  M  T  P  H  H  H  H  L  L  P  G  I  P   </first_frame>
            <second_frame>  *  T  T  S  S  S  S  W  P  G  L  S  Y  F  S  C  R  W  T  T  T  N  G  T  *  L  *  P  A  S  L  S  S  :  T  A  N  G  G  E  L  W  W  I  L  Q  S  S  T  A  E  I  R  L  L  *  R  P  T  T  T  T  Y  F  R  V  S  L  </second_frame>
            <third_frame>   E  P  P  P  P  Q  V  G  Q  V  F  H  T  S  H  V  G  G  P  P  P  M  E  P  N  Y  D  R  P  H  Y  P  P :   P  P  M  E  E  N  Y  G  G  S  Y  N  R  P  P  P  R  S  D  Y  Y  D  A  P  P  P  P  P  T  S  G  Y  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0003D15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7740" stop="7837"/>
                    <exon start="7919" stop="8021"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPPPPQVGQVFHTSHVGGPPPMEPNYDRPHYPPPPMEENYGGSYNRPPPRSDYYDAPPPPPTSGYPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14073" PGL_stop="15673"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14073" e_stop="14188"/>
            <exon e_start="15306" e_stop="15673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14073" e_stop="14188" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="14189" i_stop="15305" i_length="1117"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="15306" e_stop="15673" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14073" stop="14188"/>
              <exon start="15306" stop="15673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572165" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGAGTTTGATCCATATTTGGAAAAACAAGCTTTGGAAGCCCTCAACTCTTCACTTGAAGCATATACTAATAATCCTGAGGAAATAACTAATGCATTCAACAAAGAAGTTGGAAA : TGCATTGCTGAAGTATAAAAGCTTAAGGAGGCATCTTAAAGAAAAAGATAAATGCATGGCAACCAATCCAATTGATAGATGCTGGAGGTGTGACAAAAATTGGGCTGAAAACAGGATGGATTTGGAAGAGTGTGCTAGGGGATTTGGCCACAAGACGACCGGTGGTAAAAATGGCAAGTACTATGTTGTCACCGATGAATCAGATGATAACGTGCAGGAACCAAAACCAGGGACCCTTCGTCATGCTGTGATTCAAGAGGAGCCATTGTGGATCATCTTTGAGAAATCAATGGTGATCAAGTTGCGACAAGAACTTATGATCACGAGTGACAAGACAATCGATGGCAGGGGAGTCGCTGTTCACATAG</gDNA_template>
            <first_frame> A  E  F  D  P  Y  L  E  K  Q  A  L  E  A  L  N  S  S  L  E  A  Y  T  N  N  P  E  E  I  T  N  A  F  N  K  E  V  G  N :   A  L  L  K  Y  K  S  L  R  R  H  L  K  E  K  D  K  C  M  A  T  N  P  I  D  R  C  W  R  C  D  K  N  W  A  E  N  R  M  D  L  E  E  C  A  R  G  F  G  H  K  T  T  G  G  K  N  G  K  Y  Y  V  V  T  D  E  S  D  D  N  V  Q  E  P  K  P  G  T  L  R  H  A  V  I  Q  E  E  P  L  W  I  I  F  E  K  S  M  V  I  K  L  R  Q  E  L  M  I  T  S  D  K  T  I  D  G  R  G  V  A  V  H  I  </first_frame>
            <second_frame>  L  S  L  I  H  I  W  K  N  K  L  W  K  P  S  T  L  H  L  K  H  I  L  I  I  L  R  K  *  L  M  H  S  T  K  K  L  E   : M  H  C  *  S  I  K  A  *  G  G  I  L  K  K  K  I  N  A  W  Q  P  I  Q  L  I  D  A  G  G  V  T  K  I  G  L  K  T  G  W  I  W  K  S  V  L  G  D  L  A  T  R  R  P  V  V  K  M  A  S  T  M  L  S  P  M  N  Q  M  I  T  C  R  N  Q  N  Q  G  P  F  V  M  L  *  F  K  R  S  H  C  G  S  S  L  R  N  Q  W  *  S  S  C  D  K  N  L  *  S  R  V  T  R  Q  S  M  A  G  E  S  L  F  T  * </second_frame>
            <third_frame>   *  V  *  S  I  F  G  K  T  S  F  G  S  P  Q  L  F  T  *  S  I  Y  *  *  S  *  G  N  N  *  C  I  Q  Q  R  S  W  K  :  C  I  A  E  V  *  K  L  K  E  A  S  *  R  K  R  *  M  H  G  N  Q  S  N  *  *  M  L  E  V  *  Q  K  L  G  *  K  Q  D  G  F  G  R  V  C  *  G  I  W  P  Q  D  D  R  W  *  K  W  Q  V  L  C  C  H  R  *  I  R  *  *  R  A  G  T  K  T  R  D  P  S  S  C  C  D  S  R  G  A  I  V  D  H  L  *  E  I  N  G  D  Q  V  A  T  R  T  Y  D  H  E  *  Q  D  N  R  W  Q  G  S  R  C  S  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0003D15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14073" stop="14188"/>
                    <exon start="15306" stop="15672"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEFDPYLEKQALEALNSSLEAYTNNPEEITNAFNKEVGNALLKYKSLRRHLKEKDKCMATNPIDRCWRCDKNWAENRMDLEECARGFGHKTTGGKNGKYYVVTDESDDNVQEPKPGTLRHAVIQEEPLWIIFEKSMVIKLRQELMITSDKTIDGRGVAVHI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17833" PGL_stop="17381"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17833" e_stop="17381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="17833" e_stop="17381" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17833" stop="17381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATAAAAAAATATCACTCTTGTGAACATACAGACTACACTGAATACCAACAGAGAACTCAAATTCCTAGAAATCAATGTAATTACATCTTCTTTTTCTTTTCACGAGAATTGATTCATACTTCCACAATACCTACACTTACTCTGTCACAAGGAAAGAAAACTGAAACAAAACATAACTTATGGGAACCATTTCTTTCTTATCCTATTTTCCATTATTCTACAGTCAAAGTATCATCAATCTACTTATCTCCTTCTTACTGATGCATCAAATTATATGCACATAAGAGGATCGTTAGCTAACAAGGTATGCCAGGTTTGCACTTGAGCACACCAGCAAAGCGAGTGAGTCGTCCTGCATGTGAACCAGGTTTGAACTTGATCTTATGATTTTTTGTCAATGCAGTTTTTTTCTTGTCTTGTGGCCCTGACTCTACAAAATAAGCTCCATTTA</gDNA_template>
            <first_frame> Q  *  K  N  I  T  L  V  N  I  Q  T  T  L  N  T  N  R  E  L  K  F  L  E  I  N  V  I  T  S  S  F  S  F  H  E  N  *  F  I  L  P  Q  Y  L  H  L  L  C  H  K  E  R  K  L  K  Q  N  I  T  Y  G  N  H  F  F  L  I  L  F  S  I  I  L  Q  S  K  Y  H  Q  S  T  Y  L  L  L  T  D  A  S  N  Y  M  H  I  R  G  S  L  A  N  K  V  C  Q  V  C  T  *  A  H  Q  Q  S  E  *  V  V  L  H  V  N  Q  V  *  T  *  S  Y  D  F  L  S  M  Q  F  F  S  C  L  V  A  L  T  L  Q  N  K  L  H  L </first_frame>
            <second_frame>  N  K  K  I  S  L  L  *  T  Y  R  L  H  *  I  P  T  E  N  S  N  S  *  K  S  M  *  L  H  L  L  F  L  F  T  R  I  D  S  Y  F  H  N  T  Y  T  Y  S  V  T  R  K  E  N  *  N  K  T  *  L  M  G  T  I  S  F  L  S  Y  F  P  L  F  Y  S  Q  S  I  I  N  L  L  I  S  F  L  L  M  H  Q  I  I  C  T  *  E  D  R  *  L  T  R  Y  A  R  F  A  L  E  H  T  S  K  A  S  E  S  S  C  M  *  T  R  F  E  L  D  L  M  I  F  C  Q  C  S  F  F  L  V  L  W  P  *  L  Y  K  I  S  S  I   </second_frame>
            <third_frame>   I  K  K  Y  H  S  C  E  H  T  D  Y  T  E  Y  Q  Q  R  T  Q  I  P  R  N  Q  C  N  Y  I  F  F  F  F  S  R  E  L  I  H  T  S  T  I  P  T  L  T  L  S  Q  G  K  K  T  E  T  K  H  N  L  W  E  P  F  L  S  Y  P  I  F  H  Y  S  T  V  K  V  S  S  I  Y  L  S  P  S  Y  *  C  I  K  L  Y  A  H  K  R  I  V  S  *  Q  G  M  P  G  L  H  L  S  T  P  A  K  R  V  S  R  P  A  C  E  P  G  L  N  L  I  L  *  F  F  V  N  A  V  F  F  L  S  C  G  P  D  S  T  K  *  A  P  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0003D15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17831" stop="17571"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKKYHSCEHTDYTEYQQRTQIPRNQCNYIFFFFSRELIHTSTIPTLTLSQGKKTETKHNLWEPFLSYPIFHYSTVKVSSIYLSPSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0003D15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17719" stop="17507"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FILPQYLHLLCHKERKLKQNITYGNHFFLILFSIILQSKYHQSTYLLLTDASNYMHIRGSLANKVCQVCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="49631" PGL_stop="51482"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49631" e_stop="49856"/>
            <exon e_start="50027" e_stop="50131"/>
            <exon e_start="50650" e_stop="50745"/>
            <exon e_start="50836" e_stop="50928"/>
            <exon e_start="51151" e_stop="51236"/>
            <exon e_start="51319" e_stop="51482"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.929" e_score="0.969"/>
          <exon-intron don_prob="0.730" acc_prob="0.000" e_score="0.971"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="0.979"/>
          <exon-intron don_prob="0.933" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.837" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="49631" e_stop="49856" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.929">
            <gDNA_intron_boundary i_start="49857" i_stop="50026" i_length="170"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="50027" e_stop="50131" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.730" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50132" i_stop="50649" i_length="518"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="50650" e_stop="50745" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50746" i_stop="50835" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50836" e_stop="50928" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.933" acc_prob="0.983">
            <gDNA_intron_boundary i_start="50929" i_stop="51150" i_length="222"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51151" e_stop="51236" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.837" acc_prob="0.995">
            <gDNA_intron_boundary i_start="51237" i_stop="51318" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="0.970">
            <gDNA_exon_boundary e_start="51319" e_stop="51482" e_length="164"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49631" stop="49856"/>
              <exon start="50027" stop="50131"/>
              <exon start="50650" stop="50745"/>
              <exon start="50836" stop="50928"/>
              <exon start="51151" stop="51236"/>
              <exon start="51319" stop="51482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGGTTCCATGGTTGTGTATCTTTTTTTCTTACTTGTTGTTCTACAAATCAAGTTGTGAGCTTATAACTTCTCTTCCTGGACAACCTCCAAATATATTCTTCAAACAACACTCTGGTTATATTGTTACAAATTCTCAAAATGGTAGAGCTCTCTTTTATTATTTTGTAGAAGCGGATTCAGAAAATGCAACATCACTTCCCCTTACTCTGTGGCTCAATGGAG : GCCCTGGTTGTTCATCTGTGGGGTTTGGTGTTTTTATGGAACATGGTCCTTTTCAGCCAGGAAAAGATGGGAGACTAATAAAAAACAAGTATTCTTGGAATTTAG : AATCGAACATGTTATACGTTGAGTCCCCGATTGGAGTAGGATTTTCATACTCGAATACAAGCTCGGACTACGTCAATTGGGATGATGTTGCAACAG : CAAAGGAGAATCTCCAATTTCTACTCAACTGGTTAGAGAAATTCCCCGAATATAGGAACTTGGATTTGTTCTTAGCTGGTGAAAGTTATGCAG : GTCACTATATTCCACAGCTTACAGTATTGCTGCTTGATTACAATAGAAAGCCTAATGTTAAACCAATCAAGCTTAAATCAATTGCA : CTGGGGAATCCACTACTAGATCTTGAAATAAGCGTTAAGTCTTCCGAATATTTATGGTCACATGGTGCGATTTCTGATGAATTACTTACTATGAAAAGAACAATCTGTAACGAAACGAGGTTGTTGTTGGAATCAATACATCATAATATGTCTAACGAGTGCTC</gDNA_template>
            <first_frame> K  M  V  P  W  L  C  I  F  F  S  Y  L  L  F  Y  K  S  S  C  E  L  I  T  S  L  P  G  Q  P  P  N  I  F  F  K  Q  H  S  G  Y  I  V  T  N  S  Q  N  G  R  A  L  F  Y  Y  F  V  E  A  D  S  E  N  A  T  S  L  P  L  T  L  W  L  N  G   : G  P  G  C  S  S  V  G  F  G  V  F  M  E  H  G  P  F  Q  P  G  K  D  G  R  L  I  K  N  K  Y  S  W  N  L   : E  S  N  M  L  Y  V  E  S  P  I  G  V  G  F  S  Y  S  N  T  S  S  D  Y  V  N  W  D  D  V  A  T   : A  K  E  N  L  Q  F  L  L  N  W  L  E  K  F  P  E  Y  R  N  L  D  L  F  L  A  G  E  S  Y  A   : G  H  Y  I  P  Q  L  T  V  L  L  L  D  Y  N  R  K  P  N  V  K  P  I  K  L  K  S  I  A  :  L  G  N  P  L  L  D  L  E  I  S  V  K  S  S  E  Y  L  W  S  H  G  A  I  S  D  E  L  L  T  M  K  R  T  I  C  N  E  T  R  L  L  L  E  S  I  H  H  N  M  S  N  E  C   </first_frame>
            <second_frame>  K  W  F  H  G  C  V  S  F  F  L  T  C  C  S  T  N  Q  V  V  S  L  *  L  L  F  L  D  N  L  Q  I  Y  S  S  N  N  T  L  V  I  L  L  Q  I  L  K  M  V  E  L  S  F  I  I  L  *  K  R  I  Q  K  M  Q  H  H  F  P  L  L  C  G  S  M  E  :  A  L  V  V  H  L  W  G  L  V  F  L  W  N  M  V  L  F  S  Q  E  K  M  G  D  *  *  K  T  S  I  L  G  I  *  :  N  R  T  C  Y  T  L  S  P  R  L  E  *  D  F  H  T  R  I  Q  A  R  T  T  S  I  G  M  M  L  Q  Q  :  Q  R  R  I  S  N  F  Y  S  T  G  *  R  N  S  P  N  I  G  T  W  I  C  S  *  L  V  K  V  M  Q  :  V  T  I  F  H  S  L  Q  Y  C  C  L  I  T  I  E  S  L  M  L  N  Q  S  S  L  N  Q  L  H :   W  G  I  H  Y  *  I  L  K  *  A  L  S  L  P  N  I  Y  G  H  M  V  R  F  L  M  N  Y  L  L  *  K  E  Q  S  V  T  K  R  G  C  C  W  N  Q  Y  I  I  I  C  L  T  S  A  </second_frame>
            <third_frame>   N  G  S  M  V  V  Y  L  F  F  L  L  V  V  L  Q  I  K  L  *  A  Y  N  F  S  S  W  T  T  S  K  Y  I  L  Q  T  T  L  W  L  Y  C  Y  K  F  S  K  W  *  S  S  L  L  L  F  C  R  S  G  F  R  K  C  N  I  T  S  P  Y  S  V  A  Q  W  R :   P  W  L  F  I  C  G  V  W  C  F  Y  G  T  W  S  F  S  A  R  K  R  W  E  T  N  K  K  Q  V  F  L  E  F  R :   I  E  H  V  I  R  *  V  P  D  W  S  R  I  F  I  L  E  Y  K  L  G  L  R  Q  L  G  *  C  C  N  S :   K  G  E  S  P  I  S  T  Q  L  V  R  E  I  P  R  I  *  E  L  G  F  V  L  S  W  *  K  L  C  R :   S  L  Y  S  T  A  Y  S  I  A  A  *  L  Q  *  K  A  *  C  *  T  N  Q  A  *  I  N  C   : T  G  E  S  T  T  R  S  *  N  K  R  *  V  F  R  I  F  M  V  T  W  C  D  F  *  *  I  T  Y  Y  E  K  N  N  L  *  R  N  E  V  V  V  G  I  N  T  S  *  Y  V  *  R  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0003D15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49631" stop="49856"/>
                    <exon start="50027" stop="50131"/>
                    <exon start="50650" stop="50745"/>
                    <exon start="50836" stop="50928"/>
                    <exon start="51151" stop="51236"/>
                    <exon start="51319" stop="51480"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVPWLCIFFSYLLFYKSSCELITSLPGQPPNIFFKQHSGYIVTNSQNGRALFYYFVEADSENATSLPLTLWLNGGPGCSSVGFGVFMEHGPFQPGKDGRLIKNKYSWNLESNMLYVESPIGVGFSYSNTSSDYVNWDDVATAKENLQFLLNWLEKFPEYRNLDLFLAGESYAGHYIPQLTVLLLDYNRKPNVKPIKLKSIALGNPLLDLEISVKSSEYLWSHGAISDELLTMKRTICNETRLLLESIHHNMSNEC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="51518" PGL_stop="55382"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51518" e_stop="51618"/>
            <exon e_start="51692" e_stop="51819"/>
            <exon e_start="51950" e_stop="52042"/>
            <exon e_start="52737" e_stop="52854"/>
            <exon e_start="54907" e_stop="55382"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51518" e_stop="51618" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.990">
            <gDNA_intron_boundary i_start="51619" i_stop="51691" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51692" e_stop="51819" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.922">
            <gDNA_intron_boundary i_start="51820" i_stop="51949" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51950" e_stop="52042" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52043" i_stop="52736" i_length="694"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52737" e_stop="52854" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52855" i_stop="54906" i_length="2052"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="54907" e_stop="55382" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51518" stop="51618"/>
              <exon start="51692" stop="51819"/>
              <exon start="51950" stop="52042"/>
              <exon start="52737" stop="52854"/>
              <exon start="54907" stop="55382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563869" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGATACAGATACAGGCGATCTGCTCGCGCCAATATGTGTATCTTCTGGTGTAGCAGGACAATTAGGAGTCCTTGGAAAACTTGCCTCAATACATGAAAAG : GACGTGAGAGAAATTGGCGATCCATGCCTTACTGATAGGATATATATGTATCTTAACAAGCCAGAAGTTCAAAAGGCATTACATGCCAACACTACTCACTTGCCATATGCCTGGGATTTTTGTTTAGG : GCACCTTCAGTATCAAAGAGGTGATTTAGCTATAAATGTTATACCTCTATTGTCAAATATTCTAAAAGAGAATATACAAGTTCTGCTTTACAG : TGGAGACCAAGATACAAAAATCCCACTGACCCAAACTAGGAAAATTGCTAAACTACTTGCTAGAGATTTAAAGCTAGTTGCTTTAGATAAATATGGTCCCTGGTATGATGGCTTGCAG : ATTGGAGGATGGAGTCAATCATTTGGAGGGGTTAGAGAAGGCAAAAATGTAACATATTTAACATTTGCTACGATTAGGGGTGCGGCTCATGAAGTGCCTTATACTTCTCCTTCACAAGCTCTTACTCTTTTCAGAACATTTCTAAAAGGACAATCTCCATCGCGAAAGAATAACACCATTCGAGCCAAGAAGTTGCATAGCTCTATCGACCTCTTTTCAACTGCAATTTAGATGTTTAATTTGTTATCTTTGTTGTATACTTTTCTTTTTTAAATTGTGAGTTTGAAAAATTTAAAGCTAAATTACTTTATAGAAATGTGTAGTTTTCAACTCGACTAATGAAGAAATAATGTCATGTAAAATAAGATTCTCAAAGAGGGTGGTTTGTCACAAATGTAACTAGACGAATGAGTATTACCACCAAGCGTTAATGTAGTAGTCCTCTACTTAGTGCGGACTGCAGGACAGTTCCATTT</gDNA_template>
            <first_frame> V  I  Q  I  Q  A  I  C  S  R  Q  Y  V  Y  L  L  V  *  Q  D  N  *  E  S  L  E  N  L  P  Q  Y  M  K  R :   T  *  E  K  L  A  I  H  A  L  L  I  G  Y  I  C  I  L  T  S  Q  K  F  K  R  H  Y  M  P  T  L  L  T  C  H  M  P  G  I  F  V  *   : G  T  F  S  I  K  E  V  I  *  L  *  M  L  Y  L  Y  C  Q  I  F  *  K  R  I  Y  K  F  C  F  T   : V  E  T  K  I  Q  K  S  H  *  P  K  L  G  K  L  L  N  Y  L  L  E  I  *  S  *  L  L  *  I  N  M  V  P  G  M  M  A  C  R :   L  E  D  G  V  N  H  L  E  G  L  E  K  A  K  M  *  H  I  *  H  L  L  R  L  G  V  R  L  M  K  C  L  I  L  L  L  H  K  L  L  L  F  S  E  H  F  *  K  D  N  L  H  R  E  R  I  T  P  F  E  P  R  S  C  I  A  L  S  T  S  F  Q  L  Q  F  R  C  L  I  C  Y  L  C  C  I  L  F  F  F  K  L  *  V  *  K  I  *  S  *  I  T  L  *  K  C  V  V  F  N  S  T  N  E  E  I  M  S  C  K  I  R  F  S  K  R  V  V  C  H  K  C  N  *  T  N  E  Y  Y  H  Q  A  L  M  *  *  S  S  T  *  C  G  L  Q  D  S  S  I  </first_frame>
            <second_frame>  *  Y  R  Y  R  R  S  A  R  A  N  M  C  I  F  W  C  S  R  T  I  R  S  P  W  K  T  C  L  N  T  *  K   : G  R  E  R  N  W  R  S  M  P  Y  *  *  D  I  Y  V  S  *  Q  A  R  S  S  K  G  I  T  C  Q  H  Y  S  L  A  I  C  L  G  F  L  F  R  :  A  P  S  V  S  K  R  *  F  S  Y  K  C  Y  T  S  I  V  K  Y  S  K  R  E  Y  T  S  S  A  L  Q  :  W  R  P  R  Y  K  N  P  T  D  P  N  *  E  N  C  *  T  T  C  *  R  F  K  A  S  C  F  R  *  I  W  S  L  V  *  W  L  A   : D  W  R  M  E  S  I  I  W  R  G  *  R  R  Q  K  C  N  I  F  N  I  C  Y  D  *  G  C  G  S  *  S  A  L  Y  F  S  F  T  S  S  Y  S  F  Q  N  I  S  K  R  T  I  S  I  A  K  E  *  H  H  S  S  Q  E  V  A  *  L  Y  R  P  L  F  N  C  N  L  D  V  *  F  V  I  F  V  V  Y  F  S  F  L  N  C  E  F  E  K  F  K  A  K  L  L  Y  R  N  V  *  F  S  T  R  L  M  K  K  *  C  H  V  K  *  D  S  Q  R  G  W  F  V  T  N  V  T  R  R  M  S  I  T  T  K  R  *  C  S  S  P  L  L  S  A  D  C  R  T  V  P  F </second_frame>
            <third_frame>   D  T  D  T  G  D  L  L  A  P  I  C  V  S  S  G  V  A  G  Q  L  G  V  L  G  K  L  A  S  I  H  E  K  :  D  V  R  E  I  G  D  P  C  L  T  D  R  I  Y  M  Y  L  N  K  P  E  V  Q  K  A  L  H  A  N  T  T  H  L  P  Y  A  W  D  F  C  L  G :   H  L  Q  Y  Q  R  G  D  L  A  I  N  V  I  P  L  L  S  N  I  L  K  E  N  I  Q  V  L  L  Y  S :   G  D  Q  D  T  K  I  P  L  T  Q  T  R  K  I  A  K  L  L  A  R  D  L  K  L  V  A  L  D  K  Y  G  P  W  Y  D  G  L  Q  :  I  G  G  W  S  Q  S  F  G  G  V  R  E  G  K  N  V  T  Y  L  T  F  A  T  I  R  G  A  A  H  E  V  P  Y  T  S  P  S  Q  A  L  T  L  F  R  T  F  L  K  G  Q  S  P  S  R  K  N  N  T  I  R  A  K  K  L  H  S  S  I  D  L  F  S  T  A  I  *  M  F  N  L  L  S  L  L  Y  T  F  L  F  *  I  V  S  L  K  N  L  K  L  N  Y  F  I  E  M  C  S  F  Q  L  D  *  *  R  N  N  V  M  *  N  K  I  L  K  E  G  G  L  S  Q  M  *  L  D  E  *  V  L  P  P  S  V  N  V  V  V  L  Y  L  V  R  T  A  G  Q  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0003D15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51520" stop="51618"/>
                    <exon start="51692" stop="51819"/>
                    <exon start="51950" stop="52042"/>
                    <exon start="52737" stop="52854"/>
                    <exon start="54907" stop="55137"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTDTGDLLAPICVSSGVAGQLGVLGKLASIHEKDVREIGDPCLTDRIYMYLNKPEVQKALHANTTHLPYAWDFCLGHLQYQRGDLAINVIPLLSNILKENIQVLLYSGDQDTKIPLTQTRKIAKLLARDLKLVALDKYGPWYDGLQIGGWSQSFGGVREGKNVTYLTFATIRGAAHEVPYTSPSQALTLFRTFLKGQSPSRKNNTIRAKKLHSSIDLFSTAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="54316" PGL_stop="53872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54316" e_stop="53872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="54316" e_stop="53872" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54316" stop="53872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTATTGTAGATGATCAAATTTTTTCTTCGAAAACGAAATTAAATTACAATACACACAAAAAAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAGTTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTTAAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTTAAATTTGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGTCACTTTTATAACGAGAGGTATATCAGCTCCAAATAACAAAATTGAGGGGTATATCAGACCCTTTTCTCTTTT</gDNA_template>
            <first_frame> L  I  V  D  D  Q  I  F  S  S  K  T  K  L  N  Y  N  T  H  K  K  N  S  L  I  F  Y  S  L  N  *  G  M  K  E  K  T  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  S  *  N  I  P  *  T  L  I  E  E  S  Y  I  P  L  N  N  F  L  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  F  K  F  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  S  L  L  *  R  E  V  Y  Q  L  Q  I  T  K  L  R  G  I  S  D  P  F  L  F  </first_frame>
            <second_frame>  L  L  *  M  I  K  F  F  L  R  K  R  N  *  I  T  I  H  T  K  K  I  V  *  F  F  I  L  *  T  K  E  *  K  K  K  Q  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  V  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  I  F  *  K  K  L  E  V  I  N  I  N  L  K  L  I  F  L  N  L  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  R  Y  I  S  S  K  *  Q  N  *  G  V  Y  Q  T  L  F  S  F </second_frame>
            <third_frame>   Y  C  R  *  S  N  F  F  F  E  N  E  I  K  L  Q  Y  T  Q  K  K  *  F  N  F  L  F  F  K  L  R  N  E  R  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  *  F  F  K  K  N  *  K  *  *  I  *  I  *  N  *  F  F  *  I  C  *  M  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  V  T  F  I  T  R  G  I  S  A  P  N  N  K  I  E  G  Y  I  R  P  F  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0003D15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="64814" PGL_stop="69105"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64814" e_stop="64895"/>
            <exon e_start="66917" e_stop="67133"/>
            <exon e_start="67219" e_stop="67661"/>
            <exon e_start="67874" e_stop="68140"/>
            <exon e_start="68237" e_stop="68409"/>
            <exon e_start="68840" e_stop="69105"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.423" e_score="0.995"/>
          <exon-intron don_prob="0.067" acc_prob="0.091" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64814" e_stop="64895" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.872">
            <gDNA_intron_boundary i_start="64896" i_stop="66916" i_length="2021"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="66917" e_stop="67133" e_length="217"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.423">
            <gDNA_intron_boundary i_start="67134" i_stop="67218" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67219" e_stop="67661" e_length="443"/>
          </exon>
          <intron i_serial="3" don_prob="0.067" acc_prob="0.091">
            <gDNA_intron_boundary i_start="67662" i_stop="67873" i_length="212"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67874" e_stop="68140" e_length="267"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68141" i_stop="68236" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68237" e_stop="68409" e_length="173"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68410" i_stop="68839" i_length="430"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="68840" e_stop="69105" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64814" stop="64895"/>
              <exon start="66917" stop="67133"/>
              <exon start="67219" stop="67661"/>
              <exon start="67874" stop="68140"/>
              <exon start="68237" stop="68409"/>
              <exon start="68840" stop="69105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACAAAAGATTTACACCCAAATTACACATCTCACTCTCTATCAAGCACAAAAATTAAAACCTCTGCACAGCAGCCTCACAG : GAATATATTCTTAGAGCCAGGTCCCCTTCTCTGTGTATATTGAAGTAAATGGCACAAGCAAAAATTACGGAAAATACGTCGAAACTTGCAAGTTATGATGCTTATTTTGAAAAGGCCCAGAAAAGAAAGAAATTGCCCCGTAATTTGCAGGAAACTTTGACTGATGCATTTGCAAATATTCCATTTTCATCCTTCCCTCAAGTCCCTGGAGGAAAAG : TAATTGAAATAGACGCCGAGACTTCTATAGGCGATGCTGTCAAAATTCTTTCAGAATCGAACATCCTCTCAGTTCCTGTGAAGAATCCAGTGGCTAAGAATAGTTTGGATTGGAGAGAAAGGTACTTAGGTGTCCTTGATTACTCCGCTATTGTTCTTTGGGTGCTGGAGGGTGCGGAAACAGCAGCAGCTGCCATATCAGCAAGTTCGGCAGCAGCAGCCGGAGTTGGAGCAGGTACCGCTGGTGCTCTTGGAGCACTGGCATTAGGTGCAACAGGTCCTGCTGCAGTTGCTGGTCTAACGGTTGCTGCAGTCGGTGCAGCTGTGGCAGGTGGAGTGGCTGCAGATCGAGGAGCGGGAAAGGATGCTCCAACTGCGGCCAATAACTTGGGTGAGGATTTCTACAAGGTTATCCTTCAAGAAGAACCCTTTAAGTCAACAAAG : GTGAGCTCCATCATAAAATCCTATCGATGGGCACCATTTGTTCCAGTAGCAATGGACAGTTCTATGTTGAGTGTGTTGCTGCTGTTATCAAAATATAGGCTGCGGAATGTACCTGTGATAGAAAGAGGAAGTCCATACCTTAAGAACTTTATAACTCAATCAGCCGTGGTACGGGGTCTTGTAGGATGCAAAGGGAGGGATTGGTTTGACTGCATCTCCGCTCACCCTATATCAGAACTTGGCCTCCCATACATGTCCGCTGACGAG : GTTATTAGTGTCCGAGACGATGAACTGATTCTGGAAGCATTCAAGAAAATGAGAGATAATAATATCGGAGGTCTGCCGGTTGTTGAAGGATCAAAGAAGAAGATAGTTGGCAATGTAAGCATAAGAGACATCAGATTCTTGTTACTCAAACCTGAACTATTCTCCAATTTCAG : GCAGCTGACAGTTGCGGGTTTCATGAACACAGTTGCTTCGGCAACCCATGATGCCACAAAGGCAGCTACGCCAATAACATGCAAGCTCGGTTCAACTCTTTGTACTGTGATAGACACTCTCGCGTCCAAGTTAGTTCACAGGATCTATGTGACAGCTGAGGATGGCGATGAAGTTGTTGGTGTGATCACACTCAGAGATGTCATTTCCTGCTTCATCTATGAACCATCGAACTTCTTCGATAACTATTTTGGATTTTCTGCACAAG</gDNA_template>
            <first_frame> *  Q  K  I  Y  T  Q  I  T  H  L  T  L  Y  Q  A  Q  K  L  K  P  L  H  S  S  L  T   : G  I  Y  S  *  S  Q  V  P  F  S  V  Y  I  E  V  N  G  T  S  K  N  Y  G  K  Y  V  E  T  C  K  L  *  C  L  F  *  K  G  P  E  K  K  E  I  A  P  *  F  A  G  N  F  D  *  C  I  C  K  Y  S  I  F  I  L  P  S  S  P  W  R  K  S :   N  *  N  R  R  R  D  F  Y  R  R  C  C  Q  N  S  F  R  I  E  H  P  L  S  S  C  E  E  S  S  G  *  E  *  F  G  L  E  R  K  V  L  R  C  P  *  L  L  R  Y  C  S  L  G  A  G  G  C  G  N  S  S  S  C  H  I  S  K  F  G  S  S  S  R  S  W  S  R  Y  R  W  C  S  W  S  T  G  I  R  C  N  R  S  C  C  S  C  W  S  N  G  C  C  S  R  C  S  C  G  R  W  S  G  C  R  S  R  S  G  K  G  C  S  N  C  G  Q  *  L  G  *  G  F  L  Q  G  Y  P  S  R  R  T  L  *  V  N  K   : G  E  L  H  H  K  I  L  S  M  G  T  I  C  S  S  S  N  G  Q  F  Y  V  E  C  V  A  A  V  I  K  I  *  A  A  E  C  T  C  D  R  K  R  K  S  I  P  *  E  L  Y  N  S  I  S  R  G  T  G  S  C  R  M  Q  R  E  G  L  V  *  L  H  L  R  S  P  Y  I  R  T  W  P  P  I  H  V  R  *  R   : G  Y  *  C  P  R  R  *  T  D  S  G  S  I  Q  E  N  E  R  *  *  Y  R  R  S  A  G  C  *  R  I  K  E  E  D  S  W  Q  C  K  H  K  R  H  Q  I  L  V  T  Q  T  *  T  I  L  Q  F  Q  :  A  A  D  S  C  G  F  H  E  H  S  C  F  G  N  P  *  C  H  K  G  S  Y  A  N  N  M  Q  A  R  F  N  S  L  Y  C  D  R  H  S  R  V  Q  V  S  S  Q  D  L  C  D  S  *  G  W  R  *  S  C  W  C  D  H  T  Q  R  C  H  F  L  L  H  L  *  T  I  E  L  L  R  *  L  F  W  I  F  C  T   </first_frame>
            <second_frame>  N  K  R  F  T  P  K  L  H  I  S  L  S  I  K  H  K  N  *  N  L  C  T  A  A  S  Q  :  E  Y  I  L  R  A  R  S  P  S  L  C  I  L  K  *  M  A  Q  A  K  I  T  E  N  T  S  K  L  A  S  Y  D  A  Y  F  E  K  A  Q  K  R  K  K  L  P  R  N  L  Q  E  T  L  T  D  A  F  A  N  I  P  F  S  S  F  P  Q  V  P  G  G  K   : V  I  E  I  D  A  E  T  S  I  G  D  A  V  K  I  L  S  E  S  N  I  L  S  V  P  V  K  N  P  V  A  K  N  S  L  D  W  R  E  R  Y  L  G  V  L  D  Y  S  A  I  V  L  W  V  L  E  G  A  E  T  A  A  A  A  I  S  A  S  S  A  A  A  A  G  V  G  A  G  T  A  G  A  L  G  A  L  A  L  G  A  T  G  P  A  A  V  A  G  L  T  V  A  A  V  G  A  A  V  A  G  G  V  A  A  D  R  G  A  G  K  D  A  P  T  A  A  N  N  L  G  E  D  F  Y  K  V  I  L  Q  E  E  P  F  K  S  T  K  :  V  S  S  I  I  K  S  Y  R  W  A  P  F  V  P  V  A  M  D  S  S  M  L  S  V  L  L  L  L  S  K  Y  R  L  R  N  V  P  V  I  E  R  G  S  P  Y  L  K  N  F  I  T  Q  S  A  V  V  R  G  L  V  G  C  K  G  R  D  W  F  D  C  I  S  A  H  P  I  S  E  L  G  L  P  Y  M  S  A  D  E  :  V  I  S  V  R  D  D  E  L  I  L  E  A  F  K  K  M  R  D  N  N  I  G  G  L  P  V  V  E  G  S  K  K  K  I  V  G  N  V  S  I  R  D  I  R  F  L  L  L  K  P  E  L  F  S  N  F  R :   Q  L  T  V  A  G  F  M  N  T  V  A  S  A  T  H  D  A  T  K  A  A  T  P  I  T  C  K  L  G  S  T  L  C  T  V  I  D  T  L  A  S  K  L  V  H  R  I  Y  V  T  A  E  D  G  D  E  V  V  G  V  I  T  L  R  D  V  I  S  C  F  I  Y  E  P  S  N  F  F  D  N  Y  F  G  F  S  A  Q  </second_frame>
            <third_frame>   T  K  D  L  H  P  N  Y  T  S  H  S  L  S  S  T  K  I  K  T  S  A  Q  Q  P  H  R :   N  I  F  L  E  P  G  P  L  L  C  V  Y  *  S  K  W  H  K  Q  K  L  R  K  I  R  R  N  L  Q  V  M  M  L  I  L  K  R  P  R  K  E  R  N  C  P  V  I  C  R  K  L  *  L  M  H  L  Q  I  F  H  F  H  P  S  L  K  S  L  E  E  K  :  *  L  K  *  T  P  R  L  L  *  A  M  L  S  K  F  F  Q  N  R  T  S  S  Q  F  L  *  R  I  Q  W  L  R  I  V  W  I  G  E  K  G  T  *  V  S  L  I  T  P  L  L  F  F  G  C  W  R  V  R  K  Q  Q  Q  L  P  Y  Q  Q  V  R  Q  Q  Q  P  E  L  E  Q  V  P  L  V  L  L  E  H  W  H  *  V  Q  Q  V  L  L  Q  L  L  V  *  R  L  L  Q  S  V  Q  L  W  Q  V  E  W  L  Q  I  E  E  R  E  R  M  L  Q  L  R  P  I  T  W  V  R  I  S  T  R  L  S  F  K  K  N  P  L  S  Q  Q  R :   *  A  P  S  *  N  P  I  D  G  H  H  L  F  Q  *  Q  W  T  V  L  C  *  V  C  C  C  C  Y  Q  N  I  G  C  G  M  Y  L  *  *  K  E  E  V  H  T  L  R  T  L  *  L  N  Q  P  W  Y  G  V  L  *  D  A  K  G  G  I  G  L  T  A  S  P  L  T  L  Y  Q  N  L  A  S  H  T  C  P  L  T  R :   L  L  V  S  E  T  M  N  *  F  W  K  H  S  R  K  *  E  I  I  I  S  E  V  C  R  L  L  K  D  Q  R  R  R  *  L  A  M  *  A  *  E  T  S  D  S  C  Y  S  N  L  N  Y  S  P  I  S   : G  S  *  Q  L  R  V  S  *  T  Q  L  L  R  Q  P  M  M  P  Q  R  Q  L  R  Q  *  H  A  S  S  V  Q  L  F  V  L  *  *  T  L  S  R  P  S  *  F  T  G  S  M  *  Q  L  R  M  A  M  K  L  L  V  *  S  H  S  E  M  S  F  P  A  S  S  M  N  H  R  T  S  S  I  T  I  L  D  F  L  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C01HBa0003D15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66965" stop="67133"/>
                    <exon start="67219" stop="67661"/>
                    <exon start="67874" stop="68140"/>
                    <exon start="68237" stop="68409"/>
                    <exon start="68840" stop="69104"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1317</number_coding_nucleotides>
                  <number_encoded_amino_acids>439</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAQAKITENTSKLASYDAYFEKAQKRKKLPRNLQETLTDAFANIPFSSFPQVPGGKVIEIDAETSIGDAVKILSESNILSVPVKNPVAKNSLDWRERYLGVLDYSAIVLWVLEGAETAAAAISASSAAAAGVGAGTAGALGALALGATGPAAVAGLTVAAVGAAVAGGVAADRGAGKDAPTAANNLGEDFYKVILQEEPFKSTKVSSIIKSYRWAPFVPVAMDSSMLSVLLLLSKYRLRNVPVIERGSPYLKNFITQSAVVRGLVGCKGRDWFDCISAHPISELGLPYMSADEVISVRDDELILEAFKKMRDNNIGGLPVVEGSKKKIVGNVSIRDIRFLLLKPELFSNFRQLTVAGFMNTVASATHDATKAATPITCKLGSTLCTVIDTLASKLVHRIYVTAEDGDEVVGVITLRDVISCFIYEPSNFFDNYFGFSAQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="76823" PGL_stop="76341"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76823" e_stop="76341"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="76823" e_stop="76341" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76823" stop="76341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATCGTTTTCACTAATCTTCAAAAGCAAAAGTAAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCATTAAGCAATAGTCCTCTATTGCTTAACAAGCCTAAGTAGAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAGTTCCTTTATAGATTCAGGAATGGTTTACAATTTAAGAACAAGAGAATGTATTCCTAAACAACTAGACGAAAAGCTCCAGATATTGCTGTTGTTCTTGGAATAATTCTGTCTTTGCTTTGTAGTAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTAAACAAAAATGTTTAGGAAAGTTCCTTTTATATGAGCAAGGCACTTTCCTAAACTTCTTTGCCATTGGCTGAAAAGTCACACTTTTTGACGCCATCGGGAAGTGTGCACCTACTTTCTGTACCGTCTCCAGC</gDNA_template>
            <first_frame> Q  S  F  S  L  I  F  K  S  K  S  K  T  R  L  H  Q  T  *  E  R  V  I  N  L  T  I  K  Q  *  S  S  I  A  *  Q  A  *  V  E  N  N  L  P  T  K  L  S  H  L  D  N  L  D  F  *  H  N  T  P  V  P  L  *  I  Q  E  W  F  T  I  *  E  Q  E  N  V  F  L  N  N  *  T  K  S  S  R  Y  C  C  C  S  W  N  N  S  V  F  A  L  *  *  P  L  Q  E  F  L  K  S  F  Y  Q  V  A  K  T  K  Q  K  C  L  G  K  F  L  L  Y  E  Q  G  T  F  L  N  F  F  A  I  G  *  K  V  T  L  F  D  A  I  G  K  C  A  P  T  F  C  T  V  S  S </first_frame>
            <second_frame>  N  R  F  H  *  S  S  K  A  K  V  K  H  D  Y  T  K  R  K  K  E  L  S  I  L  P  L  S  N  S  P  L  L  L  N  K  P  K  *  K  T  I  Y  P  L  S  Y  P  T  W  T  T  *  T  F  N  T  T  H  Q  F  L  Y  R  F  R  N  G  L  Q  F  K  N  K  R  M  Y  S  *  T  T  R  R  K  A  P  D  I  A  V  V  L  G  I  I  L  S  L  L  C  S  S  L  C  K  S  S  *  K  V  F  I  K  L  Q  K  L  N  K  N  V  *  E  S  S  F  Y  M  S  K  A  L  S  *  T  S  L  P  L  A  E  K  S  H  F  L  T  P  S  G  S  V  H  L  L  S  V  P  S  P   </second_frame>
            <third_frame>   I  V  F  T  N  L  Q  K  Q  K  *  N  T  I  T  P  N  V  R  K  S  Y  Q  S  Y  H  *  A  I  V  L  Y  C  L  T  S  L  S  R  K  Q  S  T  H  *  A  I  P  P  G  Q  P  R  L  L  T  Q  H  T  S  S  F  I  D  S  G  M  V  Y  N  L  R  T  R  E  C  I  P  K  Q  L  D  E  K  L  Q  I  L  L  L  F  L  E  *  F  C  L  C  F  V  V  A  F  A  R  V  L  E  K  F  L  S  S  C  K  N  *  T  K  M  F  R  K  V  P  F  I  *  A  R  H  F  P  K  L  L  C  H  W  L  K  S  H  T  F  *  R  H  R  E  V  C  T  Y  F  L  Y  R  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C01HBa0003D15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 35 chains have been computed
$ 
$ memory statistics:
$ 17520 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2190 bytes was the average size of a spliced alignment
$ 14272 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1784 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 41 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 06:54:47
-->
